11 |
echo |
echo |
12 |
echo "where possible OPTIONS are:" |
echo "where possible OPTIONS are:" |
13 |
echo " (-help|-h) print usage" |
echo " (-help|-h) print usage" |
14 |
echo " (-mpi) use MPI input files" |
echo " (-mth) run multi-threaded (using eedata.mth)" |
15 |
|
echo " (-mpi) compile and run using MPI" |
16 |
echo " (-ieee|-noieee) if possible, use IEEE compiler flags" |
echo " (-ieee|-noieee) if possible, use IEEE compiler flags" |
17 |
echo " (DEF=\"noieee\")" |
echo " (DEF=\"-ieee\")" |
18 |
echo " (-optfile=|-of=)STRING list of optfiles to use" |
echo " (-gsl) compile with \"-gsl\" flag" |
19 |
|
echo " (-of=|-optfile=)STRING list of optfiles to use" |
20 |
echo " (-a|-addr) STRING list of email recipients" |
echo " (-a|-addr) STRING list of email recipients" |
21 |
echo " (DEF=\"edhill@mitgcm.org\")" |
echo " (DEF=\"\" no email is sent)" |
22 |
echo " (-t|-tdir) STRING list of test dirs to use" |
echo " (-mpd|-mpackdir) DIR location of the mpack utility" |
23 |
echo " (DEF=\"\" which builds all)" |
echo " (DEF=\"../tools/mpack-1.6\")" |
24 |
|
echo " (-t|-tdir) STRING list of group and/or exp. dirs to test" |
25 |
|
echo " (recognized groups: basic, tutorials)" |
26 |
|
echo " (DEF=\"\" which test all)" |
27 |
|
echo " (-skd|-skipdir) STRING list of exp. dirs to skip" |
28 |
|
echo " (DEF=\"\" which test all)" |
29 |
echo " (-b|-bash) STRING preferred location of a \"bash\" or" |
echo " (-b|-bash) STRING preferred location of a \"bash\" or" |
30 |
echo " Bourne-compatible \"sh\" shell" |
echo " Bourne-compatible \"sh\" shell" |
31 |
echo " (DEF=\"\" for \"bash\")" |
echo " (DEF=\"\" for \"bash\")" |
32 |
echo " (-adm|-ad) perform an adjoint run" |
echo " (-adm|-ad) perform an adjoint run" |
33 |
|
echo " (-oad) perform an OpenAD adjoint run" |
34 |
echo " (-command) STRING command to run" |
echo " (-command) STRING command to run" |
35 |
echo " (DEF=\"make output.txt\")" |
echo " (DEF=\"make output.txt\")" |
36 |
echo " (-m|-make) STRING command to use for \"make\"" |
echo " (-m|-make) STRING command to use for \"make\"" |
37 |
echo " (DEF=\"make\")" |
echo " (DEF=\"make\")" |
38 |
|
echo " (-odir) STRING used to build output directory name" |
39 |
|
echo " (DEF=\"hostname\")" |
40 |
|
echo " (-ptr|-ptracers) STRING specify which ptracers to test" |
41 |
|
echo " (DEF=\"1 2 3 4 5\")" |
42 |
|
echo " (-match) NUMBER Matching Criteria (number of digits)" |
43 |
|
echo " (DEF=\"12\")" |
44 |
|
echo " (-j) JOBS use \"make -j JOBS\" for parallel builds" |
45 |
echo " (-clean) *ONLY* run \"make CLEAN\"" |
echo " (-clean) *ONLY* run \"make CLEAN\"" |
46 |
echo " (-quick|-q) same as \"-nogenmake -noclean -nodepend\"" |
echo " (-quick|-q) same as \"-nogenmake -noclean -nodepend\"" |
47 |
echo " (-nogenmake|-ng) skip the genmake stage" |
echo " (-nogenmake|-ng) skip the genmake stage" |
48 |
echo " (-noclean|-nc) skip the \"make clean\" stage" |
echo " (-noclean|-nc) skip the \"make clean\" stage" |
49 |
echo " (-nodepend|-nd) skip the \"make depend\" stage" |
echo " (-nodepend|-nd) skip the \"make depend\" stage" |
50 |
|
echo " (-deldir|-dd) on success, delete the output directory" |
51 |
|
echo " (-ts) provide timing information per timestep" |
52 |
|
echo " (-papis) provide MFlop/s per timestep using PAPI" |
53 |
|
echo " (-pcls) provide MFlop/s per timestep using PCL" |
54 |
echo |
echo |
55 |
echo "and where STRING follows a whitespace-delimited format" |
echo "and where STRING can be a whitespace-delimited list" |
56 |
echo "such as:" |
echo "such as:" |
57 |
|
echo |
58 |
echo " -t 'exp0 exp2 exp3' " |
echo " -t 'exp0 exp2 exp3' " |
59 |
echo " -addr='abc@123.com testing@home.org'" |
echo " -addr='abc@123.com testing@home.org'" |
60 |
echo |
echo |
61 |
|
echo "provided that the expression is properly quoted within the current" |
62 |
|
echo "shell (note the use of single quotes to protect white space)." |
63 |
|
echo |
64 |
exit 1 |
exit 1 |
65 |
} |
} |
66 |
|
|
68 |
build_mpack() |
build_mpack() |
69 |
{ |
{ |
70 |
printf "building the mpack utility... " |
printf "building the mpack utility... " |
71 |
if test ! -x "$MPACKDIR/mpack" ; then |
MPACK="$MPACKDIR/mpack" |
72 |
|
if test ! -x $MPACK ; then |
73 |
if test ! -d $MPACKDIR ; then |
if test ! -d $MPACKDIR ; then |
74 |
echo |
echo |
75 |
echo "Error: can't find \"$MPACKDIR\"" |
echo "Error: can't find \"$MPACKDIR\"" |
78 |
echo |
echo |
79 |
HAVE_MPACK=f |
HAVE_MPACK=f |
80 |
fi |
fi |
|
printf "building mpack... " |
|
81 |
if test "x$CC" = x ; then |
if test "x$CC" = x ; then |
82 |
export CC=cc |
export CC=cc |
83 |
fi |
fi |
84 |
|
printf "building mpack (using CC=$CC)... " |
85 |
( cd $MPACKDIR && ./configure && $MAKE ) > tr_build_mpack.out 2>&1 |
( cd $MPACKDIR && ./configure && $MAKE ) > tr_build_mpack.out 2>&1 |
86 |
RETVAL=$? |
RETVAL=$? |
87 |
if test "x$RETVAL" != x0 ; then |
if test "x$RETVAL" != x0 ; then |
92 |
else |
else |
93 |
rm -f tr_build_mpack.out |
rm -f tr_build_mpack.out |
94 |
HAVE_MPACK=t |
HAVE_MPACK=t |
95 |
|
echo "done" |
96 |
fi |
fi |
97 |
else |
else |
98 |
HAVE_MPACK=t |
HAVE_MPACK=t |
99 |
|
echo "already exist" |
100 |
fi |
fi |
|
echo "OK" |
|
101 |
} |
} |
102 |
|
|
103 |
testoutput_for_prop() |
testoutput_var() |
104 |
{ |
{ |
105 |
# testoutput_for_prop dir s1 label subdir extension |
# testoutput_var dir s1 label subdir reference_output |
106 |
# |
# |
107 |
# compares files in $dir/$subdir/output.txt and $dir/results/output.txt |
# compares 1 variable output selected from file $dir/$subdir/$OUTPUTFILE |
108 |
# using search strings s1 and text label |
# with same output from reference file $dir/results/$reference_output |
109 |
|
# using search strings s1 and text label |
110 |
|
|
111 |
if [ $debug -gt 0 ]; then |
if [ $debug -gt 0 ]; then |
112 |
echo testoutput_for_prop: grep "$2" $1/$4/output.txt 1>&2 |
echo testoutput_var: grep "$2" $1/$4/$OUTPUTFILE 1>&2 |
113 |
fi |
fi |
114 |
if [ -r $1/$4/output.txt ]; then |
if [ -r $1/$4/$OUTPUTFILE ]; then |
115 |
grep "$2" $1/$4/output.txt | sed 's/.*=//' | cat -n > tmp1.txt |
grep "$2" $1/$4/$OUTPUTFILE | sed 's/.*=//' | cat -n > tmp1.txt |
116 |
lncnt=`wc -l tmp1.txt | awk '{print $1}' ` |
lncntA=`wc -l tmp1.txt | awk '{print $1}' ` |
117 |
if [ $lncnt -lt 3 ]; then |
if [ $lncntA -lt 2 ]; then |
118 |
if [ $verbose -gt 0 ]; then |
if [ $verbose -gt 0 ]; then |
119 |
echo Not enough lines of output when searching for "$2" 1>&2 |
echo Not enough lines of output when searching for "$2" 1>&2 |
120 |
fi |
fi |
121 |
return 99 |
return 99 |
122 |
fi |
fi |
123 |
else |
else |
124 |
echo testoutput_for_prop: output.txt from model run was not readable 1>&2 |
echo testoutput_var: $OUTPUTFILE from model run was not readable 1>&2 |
125 |
return 99 |
return 99 |
126 |
fi |
fi |
127 |
if [ $debug -gt 0 ]; then |
if [ $debug -gt 0 ]; then |
128 |
echo testoutput_for_prop: grep "$2" $1/results/output.txt$5 1>&2 |
echo testoutput_var: grep "$2" $1/results/$5 1>&2 |
129 |
fi |
fi |
130 |
grep "$2" $1/results/output.txt$5 | sed 's/.*=//' | cat -n > tmp2.txt |
grep "$2" $1/results/$5 | sed 's/.*=//' | cat -n > tmp2.txt |
131 |
lncnt=`wc -l tmp2.txt | awk '{print $1}' ` |
lncntB=`wc -l tmp2.txt | awk '{print $1}' ` |
132 |
if [ $lncnt -lt 3 ]; then |
if [ $lncntB -lt 2 ]; then |
133 |
if [ $verbose -gt 0 ]; then |
if [ $verbose -gt 0 ]; then |
134 |
echo Not enough lines of output when searching for "$2" 1>&2 |
echo Not enough lines of output when searching for "$2" 1>&2 |
135 |
fi |
fi |
136 |
return 99 |
return 99 |
137 |
fi |
fi |
138 |
|
if [ $lncntA -ne $lncntB ]; then |
139 |
|
if [ $verbose -gt 0 ]; then |
140 |
|
echo Not same Nb of lines when searching for "$2" ":" $lncntA $lncntB 1>&2 |
141 |
|
fi |
142 |
|
return 99 |
143 |
|
fi |
144 |
|
has_nan=`cat tmp1.txt | grep -i nan | wc -l` |
145 |
|
if [ $has_nan -gt 0 ] ; then |
146 |
|
echo testoutput_var: $OUTPUTFILE contains $has_nan NaN values 1>&2 |
147 |
|
return 99 |
148 |
|
fi |
149 |
|
has_inf=`cat tmp1.txt | grep -i inf | wc -l` |
150 |
|
if [ $has_inf -gt 0 ] ; then |
151 |
|
echo testoutput_var: $OUTPUTFILE contains $has_inf Inf values 1>&2 |
152 |
|
return 99 |
153 |
|
fi |
154 |
if [ $debug -gt 0 ]; then |
if [ $debug -gt 0 ]; then |
155 |
echo testoutput_for_prop: join tmp1.txt tmp2.txt 1>&2 |
echo testoutput_var: join tmp1.txt tmp2.txt 1>&2 |
156 |
fi |
fi |
157 |
join tmp1.txt tmp2.txt | awk '{print $1 " " $2 " " $3}' > tmp3.txt |
join tmp1.txt tmp2.txt | awk '{print $1 " " $2 " " $3}' > tmp3.txt |
158 |
if [ $debug -gt 0 ]; then |
if [ $debug -gt 0 ]; then |
159 |
echo testoutput_for_prop: compare_lines 1>&2 |
echo testoutput_var: compare_lines 1>&2 |
160 |
fi |
fi |
161 |
if [ $verbose -gt 1 ]; then |
if [ $verbose -gt 1 ]; then |
162 |
cat tmp3.txt 1>&2 |
cat tmp3.txt 1>&2 |
164 |
echo "-1" >> tmp3.txt |
echo "-1" >> tmp3.txt |
165 |
# On the SGI O3K (*not* the O2K), "cat -n" inserts a ":" after the line number |
# On the SGI O3K (*not* the O2K), "cat -n" inserts a ":" after the line number |
166 |
cat tmp3.txt | sed -e 's|:||g' > tmp4.txt |
cat tmp3.txt | sed -e 's|:||g' > tmp4.txt |
167 |
digits_of_similarity=`./tmp_cmpnum < tmp4.txt` |
digits_of_similarity=`./tr_cmpnum < tmp4.txt` |
168 |
if [ $digits_of_similarity -eq 99 ]; then |
if [ $digits_of_similarity -eq 99 ]; then |
169 |
if [ $verbose -gt 0 ]; then |
if [ $verbose -gt 0 ]; then |
170 |
echo testoutput_for_prop: No comparison was available for \"$2\" 1>&2 |
echo testoutput_var: No comparison was available for \"$3\" 1>&2 |
171 |
fi |
fi |
172 |
digits_of_similarity=99 |
digits_of_similarity=99 |
173 |
else |
else |
174 |
if [ $verbose -gt 0 ]; then |
if [ $verbose -gt 0 ]; then |
175 |
echo There were $digits_of_similarity decimal places of similarity for \"$2\" 1>&2 |
echo There were $digits_of_similarity decimal places of similarity for \"$3\" 1>&2 |
176 |
fi |
fi |
177 |
fi |
fi |
178 |
rm -f tmp1.txt tmp2.txt tmp3.txt tmp4.txt |
rm -f tmp1.txt tmp2.txt tmp3.txt tmp4.txt |
180 |
return $digits_of_similarity |
return $digits_of_similarity |
181 |
} |
} |
182 |
|
|
183 |
dashnum() |
testoutput_run() |
184 |
{ |
{ |
185 |
# dashnum n1 n2 n3 ... |
# testoutput_run directory subdir reference_output |
186 |
# |
# |
187 |
# print numbers using %3i format or "--" if number = 99 |
# test output from 1 run in "directory" |
188 |
|
# --> same processing for adjoint & forward test |
189 |
for num in $@ ; do |
# default list of output variables to be checked: |
190 |
if [ $num = 99 ]; then |
# 1rst : main variable used to decide if it pass or FAIL |
191 |
printf ' --' |
# others : number of matching digits to be printed in summary.txt |
192 |
else |
listChk=$DEF_CHECK_LIST |
193 |
printf '%3i' $num |
# load experiment-specific list from file "tr_checklist" (if it exist) |
194 |
fi |
if test -r $1/$2/tr_checklist ; then listChk=`cat $1/$2/tr_checklist` ; fi |
195 |
done |
sVar=`echo $listChk | awk '{print $1}'` |
196 |
} |
# remove 1rst var and expand the list: + => min max mean s.d |
197 |
|
listVar=`echo $listChk | sed 's/ [a-zA-Z0-9]*+/&mn &mx &av &sd/g' \ |
198 |
testoutput_ad() |
| sed 's/+//g' | sed "s/^$sVar//"` |
199 |
{ |
if [ $debug -gt 0 ]; then echo "testoutput_run: listVar(I)='$listVar'" 1>&2 ; fi |
200 |
grep $3 $1/results_ad/output.txt_adm | awk '{print NR " " $5}' > t05.txt |
# check for ptracer output in reference_output file : |
201 |
grep $3 $1/$2/output.txt_adm | awk '{print NR " " $5}' > t15.txt |
outpref=$1/results/$3 |
202 |
grep $3 $1/results_ad/output.txt_adm | awk '{print NR " " $6}' > t06.txt |
ptr_mon="trcstat_ptracerXX_min trcstat_ptracerXX_max" |
203 |
grep $3 $1/$2/output.txt_adm | awk '{print NR " " $6}' > t16.txt |
ptr_mon="$ptr_mon trcstat_ptracerXX_mean trcstat_ptracerXX_sd" |
204 |
join t05.txt t15.txt > t5.txt |
for ii in $PTRACERS_NUM ; do |
205 |
join t06.txt t16.txt > t6.txt |
ptrfound=0 |
206 |
echo "-1" >> t5.txt |
for jj in $ptr_mon ; do |
207 |
echo "-1" >> t6.txt |
name=`eval "echo $jj | sed -e 's|XX|0"$ii"|g'"` |
208 |
digits_5=`./tmp_cmpnum < t5.txt` |
tst=`grep $name $outpref | wc -l | awk '{print $1}'` |
209 |
digits_6=`./tmp_cmpnum < t6.txt` |
if test ! "x$tst" = x0 ; then ptrfound=1 ; fi |
210 |
dashnum $digits_5 $digits_6 |
done |
211 |
rm -f t[01][56].txt t[56].txt |
if test $ptrfound = '1' ; then |
212 |
} |
eval "HAVE_PTR0"$ii"=t" |
213 |
|
else |
214 |
testoutput() |
eval "HAVE_PTR0"$ii"=f" |
215 |
{ |
if test "x$ADM" = x -a "x$OADM" = x; then |
216 |
# testoutput directory subdir extension |
# remove this ptr from the list of output variable to check |
217 |
# |
# echo "-- ptr test=" $tst "number of var=" `echo $listVar | awk '{print NF}'` 1>&2 |
218 |
# test output in "directory" |
listVar=`echo "$listVar" | sed "s/ pt$ii..//g"` |
219 |
if test "x$ADM" = x ; then |
fi |
220 |
if [ $debug -gt 0 ]; then |
fi |
221 |
echo testoutput: testoutput_for_prop $1 cg2d_init_res 1>&2 |
# eval 'echo "HAVE_PTR0'$ii' = $HAVE_PTR0'$ii'"' 1>&2 |
222 |
fi |
done |
223 |
testoutput_for_prop $1 "cg2d_init_res" "cg2d init. residual" $2 $3; cg2dres=$? |
tst=`echo $sVar $listVar | awk '{ for(i=2;i<=NF;i++){if($i==$1)t+=1}; print t }'` |
224 |
if [ $debug -gt 0 ]; then |
if test $tst != 1 ; then |
225 |
echo testoutput: cg2dres=$cg2dres 1>&2 |
if test $tst = 0 ; then echo "==> WARNING: selected var >$sVar< not found" 1>&2 |
226 |
fi |
else echo "==> WARNING: found selected var >$sVar< $tst times" 1>&2 ; fi |
227 |
testoutput_for_prop $1 "dynstat_theta_min" "theta minimum" $2 $3; tmin=$? |
echo "==> WARNING: in checked list:" $listVar 1>&2 |
228 |
testoutput_for_prop $1 "dynstat_theta_max" "theta maximum" $2 $3; tmax=$? |
#- put it back once: |
229 |
testoutput_for_prop $1 "dynstat_theta_mean" "theta mean" $2 $3; tmean=$? |
listVar=" $sVar "`echo "$listVar " | sed "s/ $sVar / /g"` |
230 |
testoutput_for_prop $1 "dynstat_theta_sd" "theta s.d." $2 $3; tsd=$? |
fi |
231 |
testoutput_for_prop $1 "dynstat_salt_min" "salt minimum" $2 $3; smin=$? |
if [ $debug -gt 0 ]; then echo "testoutput_run: listVar(M)='$listVar'" 1>&2 ; fi |
232 |
testoutput_for_prop $1 "dynstat_salt_max" "salt maximum" $2 $3; smax=$? |
echo "listVar='$listVar'" > $CDIR"/summary.txt" |
233 |
testoutput_for_prop $1 "dynstat_salt_mean" "salt mean" $2 $3; smean=$? |
allargs="" |
234 |
testoutput_for_prop $1 "dynstat_salt_sd" "salt s.d." $2 $3; ssd=$? |
for xx in $listVar |
235 |
testoutput_for_prop $1 "dynstat_uvel_min" "U minimum" $2 $3; umin=$? |
do |
236 |
testoutput_for_prop $1 "dynstat_uvel_max" "U maximum" $2 $3; umax=$? |
case $xx in |
237 |
testoutput_for_prop $1 "dynstat_uvel_mean" "U mean" $2 $3; umean=$? |
'PS') if [ $debug -gt 0 ] |
238 |
testoutput_for_prop $1 "dynstat_uvel_sd" "U s.d." $2 $3; usd=$? |
then echo testoutput_run: testoutput_var $1 cg2d_init_res 1>&2 ; fi |
239 |
testoutput_for_prop $1 "dynstat_vvel_min" "V minimum" $2 $3; vmin=$? |
testoutput_var $1 "cg2d_init_res" "Press. Solver (cg2d)" $2 $3; yy=$? |
240 |
testoutput_for_prop $1 "dynstat_vvel_max" "V maximum" $2 $3; vmax=$? |
if [ $debug -gt 0 ] ; then echo testoutput_run: cg2dres=$yy 1>&2 ; fi ;; |
241 |
testoutput_for_prop $1 "dynstat_vvel_mean" "V mean" $2 $3; vmean=$? |
'Cost') testoutput_var $1 "ADM precision_derivative_cost" "ADM Cost" $2 $3; yy=$? ;; |
242 |
testoutput_for_prop $1 "dynstat_vvel_sd" "V s.d." $2 $3; vsd=$? |
'Grad') testoutput_var $1 "ADM precision_derivative_grad" "ADM Grad" $2 $3; yy=$? ;; |
243 |
dashnum $cg2dres $tmin $tmax $tmean $tsd $smin $smax $smean $ssd \ |
'Tmn') testoutput_var $1 "dynstat_theta_min" "Theta minimum" $2 $3; yy=$? ;; |
244 |
$umin $umax $umean $usd $vmin $vmax $vmean $vsd |
'Tmx') testoutput_var $1 "dynstat_theta_max" "Theta maximum" $2 $3; yy=$? ;; |
245 |
else |
'Tav') testoutput_var $1 "dynstat_theta_mean" "Theta mean" $2 $3; yy=$? ;; |
246 |
testoutput_ad $1 $2 "precision_grdchk_result" |
'Tsd') testoutput_var $1 "dynstat_theta_sd" "Theta Std.Dev" $2 $3; yy=$? ;; |
247 |
fi |
'Smn') testoutput_var $1 "dynstat_salt_min" "Salt minimum" $2 $3; yy=$? ;; |
248 |
|
'Smx') testoutput_var $1 "dynstat_salt_max" "Salt maximum" $2 $3; yy=$? ;; |
249 |
|
'Sav') testoutput_var $1 "dynstat_salt_mean" "Salt mean" $2 $3; yy=$? ;; |
250 |
|
'Ssd') testoutput_var $1 "dynstat_salt_sd" "Salt Std.Dev" $2 $3; yy=$? ;; |
251 |
|
'Umn') testoutput_var $1 "dynstat_uvel_min" "U minimum" $2 $3; yy=$? ;; |
252 |
|
'Umx') testoutput_var $1 "dynstat_uvel_max" "U maximum" $2 $3; yy=$? ;; |
253 |
|
'Uav') testoutput_var $1 "dynstat_uvel_mean" "U mean" $2 $3; yy=$? ;; |
254 |
|
'Usd') testoutput_var $1 "dynstat_uvel_sd" "U Std.Dev" $2 $3; yy=$? ;; |
255 |
|
'Vmn') testoutput_var $1 "dynstat_vvel_min" "V minimum" $2 $3; yy=$? ;; |
256 |
|
'Vmx') testoutput_var $1 "dynstat_vvel_max" "V maximum" $2 $3; yy=$? ;; |
257 |
|
'Vav') testoutput_var $1 "dynstat_vvel_mean" "V mean" $2 $3; yy=$? ;; |
258 |
|
'Vsd') testoutput_var $1 "dynstat_vvel_sd" "V Std.Dev" $2 $3; yy=$? ;; |
259 |
|
'pt1mn'|'pt2mn'|'pt3mn'|'pt4mn'|'pt5mn') ii=`echo $xx | sed 's/pt//' | sed 's/..$//'` |
260 |
|
testoutput_var $1 "trcstat_ptracer0"$ii"_min" "p0"$ii"_min" $2 $3; yy=$? ;; |
261 |
|
'pt1mx'|'pt2mx'|'pt3mx'|'pt4mx'|'pt5mx') ii=`echo $xx | sed 's/pt//' | sed 's/..$//'` |
262 |
|
testoutput_var $1 "trcstat_ptracer0"$ii"_max" "p0"$ii"_max" $2 $3; yy=$? ;; |
263 |
|
'pt1av'|'pt2av'|'pt3av'|'pt4av'|'pt5av') ii=`echo $xx | sed 's/pt//' | sed 's/..$//'` |
264 |
|
testoutput_var $1 "trcstat_ptracer0"$ii"_mean" "p0"$ii"_mean" $2 $3; yy=$? ;; |
265 |
|
'pt1sd'|'pt2sd'|'pt3sd'|'pt4sd'|'pt5sd') ii=`echo $xx | sed 's/pt//' | sed 's/..$//'` |
266 |
|
testoutput_var $1 "trcstat_ptracer0"$ii"_sd" "p0"$ii"_StDv" $2 $3; yy=$? ;; |
267 |
|
'Qntmn') testoutput_var $1 "extforcing_qnet_min" "Qnet minimum" $2 $3; yy=$? ;; |
268 |
|
'Qntmx') testoutput_var $1 "extforcing_qnet_max" "Qnet maximum" $2 $3; yy=$? ;; |
269 |
|
'Qntav') testoutput_var $1 "extforcing_qnet_mean" "Qnet mean" $2 $3; yy=$? ;; |
270 |
|
'Qntsd') testoutput_var $1 "extforcing_qnet_sd" "Qnet Std.Dev" $2 $3; yy=$? ;; |
271 |
|
'aSImn') testoutput_var $1 "seaice_area_min" "SIce Area min" $2 $3; yy=$? ;; |
272 |
|
'aSImx') testoutput_var $1 "seaice_area_max" "SIce Area max" $2 $3; yy=$? ;; |
273 |
|
'aSIav') testoutput_var $1 "seaice_area_mean" "SIce Area mean" $2 $3; yy=$? ;; |
274 |
|
'aSIsd') testoutput_var $1 "seaice_area_sd" "SIce Area StDv" $2 $3; yy=$? ;; |
275 |
|
'hSImn') testoutput_var $1 "seaice_heff_min" "SIce Heff min" $2 $3; yy=$? ;; |
276 |
|
'hSImx') testoutput_var $1 "seaice_heff_max" "SIce Hell max" $2 $3; yy=$? ;; |
277 |
|
'hSIav') testoutput_var $1 "seaice_heff_mean" "SIce Hell mean" $2 $3; yy=$? ;; |
278 |
|
'hSIsd') testoutput_var $1 "seaice_heff_sd" "SIce Hell StDv" $2 $3; yy=$? ;; |
279 |
|
'AthSiG') testoutput_var $1 "thSI_Ice_Area_G" "thSIc Area Global" $2 $3; yy=$? ;; |
280 |
|
'AthSiS') testoutput_var $1 "thSI_Ice_Area_S" "thSIc Area South" $2 $3; yy=$? ;; |
281 |
|
'AthSiN') testoutput_var $1 "thSI_Ice_Area_N" "thSIc Area North" $2 $3; yy=$? ;; |
282 |
|
'HthSiG') testoutput_var $1 "thSI_IceH_ave_G" "thSIc H Global" $2 $3; yy=$? ;; |
283 |
|
'HthSiS') testoutput_var $1 "thSI_IceH_ave_S" "thSIc H South" $2 $3; yy=$? ;; |
284 |
|
'HthSiN') testoutput_var $1 "thSI_IceH_ave_N" "thSIc H North" $2 $3; yy=$? ;; |
285 |
|
*) yy=99; echo "WARNING: asking for var=$xx : not recognized !" 1>&2 ;; |
286 |
|
esac |
287 |
|
if test $xx = $sVar |
288 |
|
then allargs="$allargs > $yy <" |
289 |
|
else allargs="$allargs $yy" |
290 |
|
fi |
291 |
|
done |
292 |
|
|
293 |
|
nbVar=`echo $listVar | awk '{print NF}'` |
294 |
|
if [ $nbVar -lt $LEN_CHECK_LIST ] ; then |
295 |
|
#-- fill line (up to standard length) with dot: |
296 |
|
adNul=`expr $LEN_CHECK_LIST - $nbVar | awk '{for(i=1;i<=$1;i++){print "."}}'` |
297 |
|
echo $allargs $adNul |
298 |
|
else |
299 |
|
echo $allargs |
300 |
|
fi |
301 |
|
# <-- same processing for adjoint & forward test |
302 |
} |
} |
303 |
|
|
304 |
genmakemodel() |
genmakemodel() |
315 |
( |
( |
316 |
cd $1; |
cd $1; |
317 |
command="$GENMAKE2 -ds -m $MAKE" |
command="$GENMAKE2 -ds -m $MAKE" |
318 |
if test "x$ADM" = x ; then |
if test "x$ADM" = xt ; then |
|
command="$command --mods=../code" |
|
|
else |
|
319 |
command="$command --mods=../code_ad" |
command="$command --mods=../code_ad" |
320 |
command="$command -adof=../../../tools/adjoint_options/adjoint_staf" |
elif test "x$OADM" = xt ; then |
321 |
|
command="$command -adof ../../../tools/adjoint_options/adjoint_oad -mods '../code_oad ../../OpenAD/code_oad_all'" |
322 |
|
else |
323 |
|
command="$command --mods=../code" |
324 |
fi |
fi |
325 |
if test "x$OPTFILE" != xNONE ; then |
if test "x$OPTFILE" != xNONE ; then |
326 |
command="$command --optfile=$OPTFILE" |
command="$command --optfile=$OPTFILE" |
328 |
if test "x$IEEE" != x ; then |
if test "x$IEEE" != x ; then |
329 |
command="$command -ieee" |
command="$command -ieee" |
330 |
fi |
fi |
331 |
|
if test "x$GSL" = xt ; then |
332 |
|
command="$command -gsl" |
333 |
|
fi |
334 |
|
if test "x$MPI" = xt ; then |
335 |
|
command="$command -mpi" |
336 |
|
fi |
337 |
|
if test "x$MULTI_THREAD" = xt ; then |
338 |
|
#- run multi-threaded using OpenMP: |
339 |
|
command="$command -omp" |
340 |
|
fi |
341 |
|
if test "x$TS" = xt ; then |
342 |
|
command="$command -ts" |
343 |
|
fi |
344 |
|
if test "x$PAPIS" = xt ; then |
345 |
|
command="$command -papis" |
346 |
|
else |
347 |
|
if test "x$PCLS" = xt ; then |
348 |
|
command="$command -pcls" |
349 |
|
fi |
350 |
|
fi |
351 |
printf 'genmake ... ' 1>&2 |
printf 'genmake ... ' 1>&2 |
352 |
$command > make.log 2>&1 |
# $command > make.log 2>&1 |
353 |
|
eval $command > make.log 2>&1 |
354 |
RETVAL=$? |
RETVAL=$? |
355 |
cp Makefile $CDIR |
# Reduce the size of the testing emails! |
356 |
|
head -100 Makefile > $CDIR/Makefile_head |
357 |
if test "x$RETVAL" != x0 ; then |
if test "x$RETVAL" != x0 ; then |
358 |
tail make.log |
tail make.log |
359 |
echo "genmakemodel: genmake failed" 1>&2 |
echo "genmakemodel: genmake failed" 1>&2 |
370 |
{ |
{ |
371 |
# makeclean directory |
# makeclean directory |
372 |
if test "x$NOCLEAN" = xt ; then |
if test "x$NOCLEAN" = xt ; then |
373 |
echo "make CLEAN skipped!" |
echo "make Clean skipped!" |
374 |
else |
else |
375 |
( |
( |
376 |
cd $1; |
cd $1; |
377 |
if test -e output.txt ; then |
#if test -e $OUTPUTFILE ; then rm -f $OUTPUTFILE ; fi |
|
rm -f output.txt |
|
|
fi |
|
|
printf 'make CLEAN ... ' 2>&1 |
|
378 |
if test -r Makefile ; then |
if test -r Makefile ; then |
379 |
$MAKE CLEAN >> make.log 2>&1 |
printf 'clean build-dir: make Clean ... ' 2>&1 |
380 |
|
$MAKE Clean >> make.log 2>&1 |
381 |
RETVAL=$? |
RETVAL=$? |
382 |
if test "x$RETVAL" != x0 ; then |
if test "x$RETVAL" != x0 ; then |
383 |
tail make.log |
tail make.log |
384 |
echo "makeclean: \"make CLEAN\" failed" 1>&2 |
echo "makeclean: \"make Clean\" failed" 1>&2 |
385 |
cp make.log $CDIR"/make.log" |
cp make.log $CDIR"/make.log" |
386 |
return 1 |
return 1 |
387 |
fi |
fi |
392 |
fi |
fi |
393 |
} |
} |
394 |
|
|
395 |
|
run_clean() |
396 |
|
{ |
397 |
|
# run_clean directory |
398 |
|
if test "x$NOCLEAN" = xt ; then |
399 |
|
echo "run_clean skipped!" |
400 |
|
else |
401 |
|
( |
402 |
|
cd $1; |
403 |
|
printf 'clean run-dir ... ' 2>&1 |
404 |
|
# part of what is done after "make clean" when doing "make CLEAN" |
405 |
|
find . -name "*.meta" -exec rm {} \; |
406 |
|
find . -name "*.data" -exec rm {} \; |
407 |
|
find . -name "fort.*" -exec rm {} \; |
408 |
|
find . -type l -exec rm {} \; |
409 |
|
rm -f $EXECUTABLE *.txt STD* *diagnostics.log datetime |
410 |
|
rm -rf mnc_test_* |
411 |
|
rm -f *_MIT_CE_000.opt0000 costfunction*0000 |
412 |
|
echo successful 1>&2 |
413 |
|
exit 0 |
414 |
|
) |
415 |
|
fi |
416 |
|
} |
417 |
|
|
418 |
makedependmodel() |
makedependmodel() |
419 |
{ |
{ |
420 |
# makedependmodel directory |
# makedependmodel directory |
445 |
cd $1; |
cd $1; |
446 |
if test -r Makefile ; then |
if test -r Makefile ; then |
447 |
printf 'make ... ' 1>&2 |
printf 'make ... ' 1>&2 |
448 |
if test "x$ADM" = x ; then |
if test "x$ADM" = xt ; then |
|
$MAKE >> make.log 2>&1 |
|
|
else |
|
449 |
$MAKE adall >> make.log 2>&1 |
$MAKE adall >> make.log 2>&1 |
450 |
|
elif test "x$OADM" = xt ; then |
451 |
|
$MAKE adAll >> make.log 2>&1 |
452 |
|
else |
453 |
|
if test "x$JOBS" = x ; then |
454 |
|
$MAKE >> make.log 2>&1 |
455 |
|
else |
456 |
|
$MAKE -j $JOBS >> make.log 2>&1 |
457 |
|
fi |
458 |
fi |
fi |
459 |
RETVAL=$? |
RETVAL=$? |
460 |
if test "x$RETVAL" != x0 ; then |
if test "x$RETVAL" != x0 ; then |
479 |
code_dir=$2 |
code_dir=$2 |
480 |
BUILD_DIR=$dir/$3 |
BUILD_DIR=$dir/$3 |
481 |
CODE_DIR=$dir/$code_dir |
CODE_DIR=$dir/$code_dir |
482 |
|
|
483 |
# These are files that should replace their counter-part when using -mpi |
# These are files that should replace their counter-part when using -mpi |
484 |
MPI_FILES=`(cd $CODE_DIR; find . -name "*_mpi")` |
MPI_FILES=`(cd $CODE_DIR; find . -name "*_mpi" -print)` |
485 |
|
|
486 |
# Is this an MPI run? |
# Is this an MPI run? |
487 |
if test "x$MPI" = xt ; then |
if test "x$MPI" = xt ; then |
494 |
RETVAL=$? |
RETVAL=$? |
495 |
if test "x$RETVAL" != x0 ; then |
if test "x$RETVAL" != x0 ; then |
496 |
if ! test -f $BUILD_DIR/$i ; then |
if ! test -f $BUILD_DIR/$i ; then |
497 |
#echo Linking $name to $i |
#echo Linking $name to $i |
498 |
(cd $BUILD_DIR; ln -sf ../$code_dir/$i $name) |
(cd $BUILD_DIR; ln -sf ../$code_dir/$i $name) |
499 |
fi |
fi |
500 |
fi |
fi |
501 |
done |
done |
502 |
else |
else |
503 |
# NO: We undo any _mpi symbolically linked files |
# NO: We undo any _mpi symbolically linked files |
504 |
for ii in $MPI_FILES ; do |
for ii in $MPI_FILES ; do |
505 |
i=`echo $ii | sed 's:^\./::'` |
i=`echo $ii | sed 's:^\./::'` |
506 |
name=`echo $i | sed 's:_mpi::' ` |
name=`echo $i | sed 's:_mpi::' ` |
507 |
if test -L $BUILD_DIR/$name ; then |
if test -L $BUILD_DIR/$name ; then |
508 |
linktarg=`(cd $BUILD_DIR; readlink $name)` |
cmp $BUILD_DIR/$name "../$code_dir/$name"_mpi > /dev/null 2>&1 |
509 |
if test $linktarg = "../$code_dir/$name"_mpi ; then |
RETVAL=$? |
510 |
#echo Un-linking $name from $linktarg |
if test "x$RETVAL" = x0 ; then |
511 |
|
#echo Un-linking $name from $linktarg |
512 |
rm -f $BUILD_DIR/$name |
rm -f $BUILD_DIR/$name |
513 |
fi |
fi |
514 |
fi |
fi |
519 |
|
|
520 |
linkdata() |
linkdata() |
521 |
{ |
{ |
522 |
# linkdata flag |
# linkdata run_dir input_dir_1 input_dir_2 ... |
523 |
# |
# |
524 |
# symbolically link data files to run directory |
# symbolically link data files to run directory |
525 |
if test "x$1" = x1 ; then |
if test -d $1 ; then |
526 |
( |
( |
527 |
cd $2 |
cd $1 ; shift |
528 |
if test "x$ADM" = x ; then |
if test -r "../"$1"/eedata.mth" ; then |
529 |
files=`( cd ../input ; ls -1 | grep -v CVS )` |
# found eedata.mth in 1rst input dir and it is readable |
530 |
for i in $files ; do |
if test "x$MULTI_THREAD" = "xt" ; then |
531 |
if test ! -d "../input/"$i ; then |
# multi-threaded test: remove symbolic link & link eedata.mth |
532 |
ln -sf "../input/"$i $i |
if test -h eedata ; then rm -f eedata ; fi |
533 |
fi |
if test ! -r eedata ; then |
534 |
done |
ln -sf "../"$1"/eedata.mth" eedata ; |
535 |
else |
printf 'eedata.mth ' 1>&2 |
|
files=`( cd ../input ; ls -1 *.bin | grep -v CVS )` |
|
|
for i in $files ; do |
|
|
if test ! -d "../input/"$i ; then |
|
|
ln -sf "../input/"$i $i |
|
|
fi |
|
|
done |
|
|
files=`( cd ../input_ad ; ls -1 | grep -v CVS )` |
|
|
for i in $files ; do |
|
|
if test ! -d "../input_ad/"$i ; then |
|
|
ln -sf "../input_ad/"$i $i |
|
536 |
fi |
fi |
537 |
done |
else |
538 |
|
# not multi-threaded test: remove eedata symbolic link |
539 |
|
if test -h eedata ; then rm -f eedata ; fi |
540 |
|
fi |
541 |
fi |
fi |
542 |
|
prevDir='NONE' |
543 |
|
for ldir in $* ; do |
544 |
|
if test -d "../"$ldir -a $ldir != $prevDir ; then |
545 |
|
printf 'ldir='${ldir} 1>&2 |
546 |
|
files=`( cd "../"$ldir ; ls -1 | grep -v CVS )` |
547 |
|
for i in $files ; do |
548 |
|
if test ! -d "../"$ldir/$i ; then |
549 |
|
if test ! -r $i ; then |
550 |
|
printf ' '$i 1>&2 |
551 |
|
ln -sf "../"$ldir"/"$i $i |
552 |
|
fi |
553 |
|
fi |
554 |
|
done |
555 |
|
if test -x "../"$ldir"/"prepare_run ; then |
556 |
|
"../"$ldir"/"prepare_run |
557 |
|
fi |
558 |
|
printf ' ; ' 1>&2 |
559 |
|
fi |
560 |
|
prevDir=$ldir |
561 |
|
done |
562 |
) |
) |
563 |
fi |
fi |
564 |
} |
} |
571 |
# (where "$COMMAND" is relative to "directory") |
# (where "$COMMAND" is relative to "directory") |
572 |
( |
( |
573 |
cd $1 |
cd $1 |
574 |
printf 'runmodel ... ' 1>&2 |
printf 'runmodel in %s ...' $1 1>&2 |
575 |
# make output.txt |
# make output.txt |
576 |
echo |
echo |
577 |
echo "COMMAND='$COMMAND'" |
if test -L $EXECUTABLE -a -x "../"$builddir"/"$EXECUTABLE ; then |
578 |
echo "pwd='"`pwd`"'" |
diff -q $EXECUTABLE "../"$builddir"/"$EXECUTABLE > /dev/null 2>&1 |
579 |
( eval $COMMAND ) >> run.log 2>&1 |
outD=$? ; if test $outD != 0 ; then rm -f $EXECUTABLE ; fi |
580 |
RETVAL=$? |
fi |
581 |
if test "x$RETVAL" = x0 ; then |
if test ! -x $EXECUTABLE -a -x "../"$builddir"/"$EXECUTABLE ; then |
582 |
echo successful 1>&2 |
echo " link" $EXECUTABLE "from dir ../"$builddir > run.log_tmp |
583 |
if test "x$ADM" = x ; then |
ln -sf "../"$builddir"/"$EXECUTABLE . |
584 |
cp output.txt $CDIR"/output.txt" |
fi |
585 |
|
if test ! -x $EXECUTABLE ; then |
586 |
|
rm -f $RUNLOG ; touch $RUNLOG |
587 |
|
if test -f run.log_tmp ; then cat run.log_tmp >> $RUNLOG ; fi |
588 |
|
echo " no executable:" $EXECUTABLE >> $RUNLOG |
589 |
|
RETVAL=8 |
590 |
|
ENDVAL=-1 |
591 |
|
else |
592 |
|
if test ! -f $OUTPUTFILE -o $OUTPUTFILE -ot $EXECUTABLE ; then |
593 |
|
# output do not exist or is older than executable: |
594 |
|
rm -f $RUNLOG ; touch $RUNLOG |
595 |
|
if test -f run.log_tmp ; then cat run.log_tmp >> $RUNLOG ; fi |
596 |
|
( eval $COMMAND ) >> $RUNLOG 2>&1 |
597 |
|
RETVAL=$? |
598 |
else |
else |
599 |
cp output.txt_adm $CDIR"/output.txt_adm" |
RETVAL=0 |
600 |
|
if test -f $RUNLOG ; then |
601 |
|
if test -f run.log_tmp ; then cat run.log_tmp >> $RUNLOG ; fi |
602 |
|
echo "---------->> $OUTPUTFILE is up to date " >> $RUNLOG 2>&1 |
603 |
|
else |
604 |
|
touch $RUNLOG |
605 |
|
if test -f run.log_tmp ; then cat run.log_tmp >> $RUNLOG ; fi |
606 |
|
echo "---------->> $OUTPUTFILE is up to date " >> $RUNLOG 2>&1 |
607 |
|
echo " no previous $RUNLOG: assume NORMAL END" >> $RUNLOG 2>&1 |
608 |
|
fi |
609 |
fi |
fi |
610 |
|
ENDVAL=`cat $RUNLOG | grep -v 'ABNORMAL END' | grep -c 'NORMAL END'` |
611 |
|
fi |
612 |
|
rm -f run.log_tmp |
613 |
|
#if test "x$RETVAL" = x0 ; then |
614 |
|
if [ $RETVAL -eq 0 -a $ENDVAL -gt 0 ] ; then |
615 |
|
tail $RUNLOG |
616 |
|
echo successful 1>&2 |
617 |
|
# === Reduce the size of the testing emails! |
618 |
|
#cp $OUTPUTFILE $CDIR"/"$OUTPUTFILE |
619 |
|
if test -s STDERR.0000 ; then cp STDERR.0000 $CDIR"/STDERR.0000" ; fi |
620 |
return 0 |
return 0 |
621 |
else |
else |
622 |
tail run.log |
tail $RUNLOG |
623 |
echo failed 1>&2 |
echo failed '(run:' $RETVAL ' end:' $ENDVAL ')' 1>&2 |
624 |
cp run.log $CDIR"/run.log" |
cp $RUNLOG $CDIR"/"$RUNLOG |
625 |
|
if test -s STDERR.0000 ; then cp STDERR.0000 $CDIR"/STDERR.0000" ; fi |
626 |
return 1 |
return 1 |
627 |
fi |
fi |
628 |
) |
) |
632 |
{ |
{ |
633 |
# create codelet for comparing model output |
# create codelet for comparing model output |
634 |
|
|
635 |
printf "creating the comparison code... " |
printf "creating the comparison code (using CC=$CC)... " |
636 |
cat > tmp_cmpnum.c <<EOF |
cat > tr_cmpnum.c <<EOF |
637 |
#include <stdio.h> |
#include <stdio.h> |
638 |
#include <math.h> |
#include <math.h> |
639 |
int main( int argc, char** argv ) { |
int main( int argc, char** argv ) { |
640 |
int linnum,best,lncnt; |
int linnum,cmplin,best,lncnt; |
641 |
double a,b,diff; |
double a,b,abave,relerr; |
642 |
best = -16; |
best = -22; |
643 |
lncnt = 0; |
lncnt = 0; |
644 |
while( 1 & (lncnt+=1) < 999 ) { |
while( 1 & ( (lncnt+=1) < 999 ) ) { |
645 |
scanf("%d", &linnum); |
scanf("%d", &linnum); |
646 |
if (linnum == -1) break; |
if (linnum == -1) break; |
647 |
scanf("%lf", &a); scanf("%lf", &b); |
scanf("%lf", &a); scanf("%lf", &b); |
648 |
diff = 0.5*(fabs(a)+fabs(b)); |
abave = 0.5*(fabs(a)+fabs(b)); |
649 |
if (diff > 1.e-12) { |
if ( abave == abave ) { |
650 |
diff=fabs(a-b)/diff; |
if (abave > 0.0) { |
651 |
if (diff > 0.0) { |
relerr=fabs(a-b)/abave; |
652 |
linnum = (int)log10(diff); |
if (relerr > 0.0) { cmplin = (int)rint(log10(relerr)); } |
653 |
best = (best > linnum) ? best : linnum; |
else { cmplin = -16 ; } |
654 |
} |
best = (best > cmplin) ? best : cmplin; } |
655 |
else { |
else { cmplin = -22 ; } |
656 |
if (best == -16 && diff != 0) best = -22; |
/* printf("%d ; %lf ; %lf\n",cmplin,a,b); */ |
657 |
} |
} |
658 |
} |
else { |
659 |
|
/* printf("%lf ; %lf ; %lf\n",abave,a,b); */ |
660 |
|
break; } |
661 |
} |
} |
662 |
if (lncnt == 999) best=-29; |
if (lncnt == 999) best=-29; |
663 |
|
if (linnum != -1) best=-99; |
664 |
printf("%d\n", -best); |
printf("%d\n", -best); |
665 |
return 0; |
return 0; |
666 |
} |
} |
667 |
EOF |
EOF |
668 |
cc -o tmp_cmpnum tmp_cmpnum.c -lm |
$CC -o tr_cmpnum tr_cmpnum.c -lm |
669 |
|
|
670 |
if [ -x ./tmp_cmpnum ]; then |
if [ -x ./tr_cmpnum ]; then |
671 |
echo "OK" |
echo "OK" |
672 |
return 0 |
return 0 |
673 |
else |
else |
674 |
echo |
echo |
675 |
echo "ERROR: failed to compile comparison code" |
echo "ERROR: failed to compile comparison code -- please specify" |
676 |
|
echo " a C compiler using the CC environment variable." |
677 |
exit 1 |
exit 1 |
678 |
fi |
fi |
679 |
} |
} |
685 |
nm=$1 |
nm=$1 |
686 |
printf '%s %s %s %s' $2 $3 $4 $5 |
printf '%s %s %s %s' $2 $3 $4 $5 |
687 |
shift; shift; shift; shift; shift; |
shift; shift; shift; shift; shift; |
688 |
printf '%3s' $@ |
listPrt=$@ |
689 |
|
listRes=`echo $listPrt | sed 's/>//' | sed 's/<//'` |
690 |
|
xx=`echo $listPrt | sed 's/.*>//' | sed 's/<.*//' | awk '{print $1}'` |
691 |
|
printf '%3s' $listPrt |
692 |
|
# line below does not work on hp-ux_ia64 : do those substitutions later on |
693 |
|
# printf '%3s' $listPrt | sed 's/ 99/ --/g' | sed 's/ > />/' | sed 's/ < /</' |
694 |
|
|
695 |
if [ $1 = '--' ]; then |
if [ $xx = '..' ]; then |
696 |
|
printf ' N/O ' |
697 |
|
elif [ $xx = '--' ]; then |
698 |
|
printf ' N/O ' |
699 |
|
elif [ $xx = 99 ]; then |
700 |
printf ' N/O ' |
printf ' N/O ' |
701 |
else |
else |
702 |
if [ $1 -gt 12 ]; then |
if [ $xx -ge $MATCH_CRIT ]; then |
703 |
printf ' pass' |
printf ' pass' |
704 |
else |
else |
705 |
printf ' FAIL' |
printf ' FAIL' |
710 |
|
|
711 |
} |
} |
712 |
|
|
713 |
show_help() |
scandirs() |
714 |
{ |
{ |
715 |
cat - << EOF |
if [ $# -eq 1 ]; then |
716 |
$0 [-help] [-quick] [-verbose] dir1 [dir2] [...] |
for arg in * ; do |
717 |
|
test -f $arg/$1 && echo $arg |
718 |
-help|-h Show this help message |
done |
719 |
-quiet Reduce the amount of output |
else |
720 |
-verbose Produce copious amounts of output |
echo $* |
721 |
-debug Produce even more output which will mean nothing to most |
fi |
|
-force Do "make CLEAN" before compiling. This forces a complete rebuild. |
|
|
-clean Do "make CLEAN" after compiling and testing. |
|
|
-cleanup Aggresively removes all model output, executables and object files |
|
|
and then exits. Use with care. |
|
|
|
|
|
Normal usage: |
|
|
$0 * Configure, compile, run and analyze in all experiment directories |
|
|
EOF |
|
722 |
} |
} |
723 |
|
|
724 |
scandirs() |
|
725 |
|
check_eedata() |
726 |
{ |
{ |
727 |
if [ $# -eq 0 ]; then |
# check_eedata size.h eedata |
728 |
for arg in * ; do |
if [ $# -eq 2 ] ; then |
729 |
test -d $arg/input && echo $arg |
if test -f $1 -a -f $2 ; then |
730 |
done |
sx=`grep "^ & *nSx *=" $1 | sed "s/^ & *nSx *=//" | sed 's/, *$//'` |
731 |
|
nx=`grep "^ *nTx *=" $2 | tail -1 | sed 's/^ *nTx *= *//' | sed "s/, *$//"` |
732 |
|
if test "x$nx" = x ; then |
733 |
|
rx=10 |
734 |
|
else |
735 |
|
rx=`expr $sx % $nx` |
736 |
|
fi |
737 |
|
sy=`grep "^ & *nSy *=" $1 | sed "s/^ & *nSy *=//" | sed 's/, *$//'` |
738 |
|
ny=`grep "^ *nTy *=" $2 | tail -1 | sed 's/^ *nTy *= *//' | sed "s/, *$//"` |
739 |
|
if test "x$ny" = x ; then |
740 |
|
ry=20 |
741 |
|
else |
742 |
|
ry=`expr $sy % $ny` |
743 |
|
fi |
744 |
|
echo `expr $rx + $ry` |
745 |
|
else |
746 |
|
echo '-1' |
747 |
|
fi |
748 |
else |
else |
749 |
echo $* |
echo '-2' |
750 |
fi |
fi |
|
} |
|
751 |
|
|
752 |
|
} |
753 |
|
|
754 |
############################################################################### |
############################################################################### |
755 |
|
|
758 |
debug=0 |
debug=0 |
759 |
verbose=1 |
verbose=1 |
760 |
clean=0 |
clean=0 |
|
expts='' |
|
|
# ieee=1 |
|
761 |
|
|
762 |
IEEE= |
IEEE=true |
763 |
if test "x$MITGCM_IEEE" != x ; then |
if test "x$MITGCM_IEEE" != x ; then |
764 |
IEEE=$MITGCM_IEEE |
IEEE=$MITGCM_IEEE |
765 |
fi |
fi |
766 |
|
GSL=f |
767 |
|
|
768 |
CLEANUP=f |
CLEANUP=f |
769 |
QUICK=f |
QUICK=f |
770 |
NOGENMAKE=f |
NOGENMAKE=f |
771 |
NOCLEAN=f |
NOCLEAN=f |
772 |
NODEPEND=f |
NODEPEND=f |
773 |
|
POSTCLEAN=f |
774 |
|
|
775 |
BASH= |
BASH= |
776 |
OPTFILE=NONE |
OPTFILE=NONE |
777 |
ADDRESSES= |
ADDRESSES= |
778 |
TESTDIRS= |
TESTDIRS= |
779 |
|
SKIPDIRS= |
780 |
MPACKDIR="../tools/mpack-1.6" |
MPACKDIR="../tools/mpack-1.6" |
781 |
HAVE_MPACK= |
HAVE_MPACK= |
782 |
MPACK="$MPACKDIR/mpack" |
MPACK= |
783 |
COMMAND= |
COMMAND= |
784 |
MAKE=make |
if test "x$MAKE" = x ; then |
785 |
|
MAKE=make |
786 |
|
fi |
787 |
|
if test "x$CC" = x ; then |
788 |
|
CC=cc |
789 |
|
fi |
790 |
|
JOBS= |
791 |
MPI=f |
MPI=f |
792 |
|
MULTI_THREAD=f |
793 |
|
OUTDIR= |
794 |
|
DELDIR= |
795 |
|
|
796 |
ADM= |
ADM= |
797 |
|
OADM= |
798 |
|
|
799 |
|
# list of pTracers to check for monitor output |
800 |
|
PTRACERS_NUM="1 2 3 4 5" |
801 |
|
|
802 |
|
MATCH_CRIT=13 |
803 |
|
|
804 |
printf "parsing options... " |
printf "parsing options... " |
805 |
|
|
829 |
ac_prev=ADDRESSES ;; |
ac_prev=ADDRESSES ;; |
830 |
-addr=* | --addr=*) |
-addr=* | --addr=*) |
831 |
ADDRESSES=$ac_optarg ;; |
ADDRESSES=$ac_optarg ;; |
832 |
|
-mpackdir | --mpackdir | -mpd | --mpd) |
833 |
|
ac_prev=MPACKDIR ;; |
834 |
|
-mpackdir=* | --mpackdir=* | -mpd=* | --mpd=*) |
835 |
|
MPACKDIR=$ac_optarg ;; |
836 |
|
|
837 |
-tdir | --tdir | -t | --t) |
-tdir | --tdir | -t | --t) |
838 |
ac_prev=TESTDIRS ;; |
ac_prev=TESTDIRS ;; |
839 |
-tdir=* | --tdir=*) |
-tdir=* | --tdir=*) |
840 |
TESTDIRS=$ac_optarg ;; |
TESTDIRS=$ac_optarg ;; |
841 |
|
|
842 |
|
-skipdir | --skipdir | -skd | --skd) |
843 |
|
ac_prev=SKIPDIRS ;; |
844 |
|
-skipdir=* | --skipdir=*) |
845 |
|
SKIPDIRS=$ac_optarg ;; |
846 |
|
|
847 |
-bash | --bash | -b | --b) |
-bash | --bash | -b | --b) |
848 |
ac_prev=BASH ;; |
ac_prev=BASH ;; |
849 |
-bash=* | --bash=*) |
-bash=* | --bash=*) |
859 |
-make=* | --make=*) |
-make=* | --make=*) |
860 |
MAKE=$ac_optarg ;; |
MAKE=$ac_optarg ;; |
861 |
|
|
862 |
|
-odir | --odir) |
863 |
|
ac_prev=OUTDIR ;; |
864 |
|
-odir=* | --odir=*) |
865 |
|
OUTDIR=$ac_optarg ;; |
866 |
|
|
867 |
|
-ptracers | --ptracers | -ptr | --ptr) |
868 |
|
ac_prev=PTRACERS_NUM ;; |
869 |
|
-ptracers=* | --ptracers=* | -ptr=* | --ptr=*) |
870 |
|
PTRACERS_NUM=$ac_optarg ;; |
871 |
|
|
872 |
|
-match | --match ) ac_prev=MATCH_CRIT ;; |
873 |
|
-match=* | --match=* ) MATCH_CRIT=$ac_optarg ;; |
874 |
|
|
875 |
|
-j) ac_prev=JOBS ;; |
876 |
|
-j=*) JOBS=$ac_optarg ;; |
877 |
|
|
878 |
-clean | --clean) |
-clean | --clean) |
879 |
CLEANUP=t ;; |
CLEANUP=t ; DELDIR=t ;; |
880 |
|
|
881 |
-quick | --quick | -q | --q) |
-quick | --quick | -q | --q) |
882 |
QUICK=t ;; |
QUICK=t ;; |
887 |
-nodepend | --nodepend | -nd | --nd) |
-nodepend | --nodepend | -nd | --nd) |
888 |
NODEPEND=t ;; |
NODEPEND=t ;; |
889 |
|
|
890 |
|
-postclean | --postclean | -pc | --pc) |
891 |
|
POSTCLEAN=t ;; |
892 |
|
|
893 |
-mpi) MPI=t ;; |
-mpi) MPI=t ;; |
894 |
|
|
895 |
|
-mth) MULTI_THREAD=t ;; |
896 |
|
|
897 |
-adm | -ad) ADM=t ;; |
-adm | -ad) ADM=t ;; |
898 |
|
|
899 |
|
-oad) OADM=t; NODEPEND=t ;; |
900 |
|
|
901 |
-ieee) IEEE=true ;; |
-ieee) IEEE=true ;; |
902 |
-noieee) IEEE= ;; |
-noieee) IEEE= ;; |
903 |
|
-gsl) GSL=t ;; |
904 |
|
|
905 |
-verbose) verbose=2 ;; |
-verbose) verbose=2 ;; |
906 |
-debug) debug=1 ;; |
-debug) debug=1 ;; |
907 |
-quiet) verbose=0 ;; |
-quiet) verbose=0 ;; |
908 |
|
|
909 |
|
-deldir | -dd) DELDIR=t ;; |
910 |
|
|
911 |
|
-ts) TS=t;; |
912 |
|
|
913 |
|
-papis) PAPIS=t;; |
914 |
|
|
915 |
|
-pcls) PCL=t;; |
916 |
|
|
917 |
-*) |
-*) |
918 |
echo "Error: unrecognized option: "$ac_option |
echo "Error: unrecognized option: "$ac_option |
919 |
usage |
usage |
934 |
NODEPEND=t |
NODEPEND=t |
935 |
fi |
fi |
936 |
|
|
937 |
|
#- setting for forward or ADM testing |
938 |
|
if test "x$ADM" = xt ; then |
939 |
|
code_dir=code_ad |
940 |
|
inputdir=input_ad |
941 |
|
ref_outp="output_adm.txt" |
942 |
|
EXECUTABLE="mitgcmuv_ad" |
943 |
|
elif test "x$OADM" = xt ; then |
944 |
|
code_dir=code_oad |
945 |
|
inputdir=input_oad |
946 |
|
ref_outp="output_oadm.txt" |
947 |
|
EXECUTABLE="mitgcmuv_ad" |
948 |
|
else |
949 |
|
code_dir=code |
950 |
|
inputdir=input |
951 |
|
ref_outp="output.txt" |
952 |
|
EXECUTABLE="mitgcmuv" |
953 |
|
fi |
954 |
|
|
955 |
if test "x$TESTDIRS" = x ; then |
if test "x$TESTDIRS" = x ; then |
956 |
TESTDIRS=`scandirs` |
LIST=`scandirs results/$ref_outp` |
957 |
|
else |
958 |
|
#- expand group of experiments: |
959 |
|
LIST=" " |
960 |
|
for xx in $TESTDIRS |
961 |
|
do |
962 |
|
case $xx in |
963 |
|
'basic') LIST=${LIST}" aim.5l_cs hs94.128x64x5 ideal_2D_oce" |
964 |
|
LIST=${LIST}" lab_sea tutorial_baroclinic_gyre" |
965 |
|
LIST=${LIST}" tutorial_global_oce_latlon tutorial_plume_on_slope" |
966 |
|
;; |
967 |
|
'tutorials') |
968 |
|
LIST=${LIST}" "`ls | grep 'tutorial_'` ;; |
969 |
|
*) LIST=${LIST}" "$xx ;; |
970 |
|
esac |
971 |
|
done |
972 |
fi |
fi |
973 |
|
#echo 'LIST='${LIST}'<' |
974 |
|
#- skip dirs, remove duplicate and non-directory: |
975 |
|
TESTDIRS=" " |
976 |
|
count=0 |
977 |
|
for xx in $LIST |
978 |
|
do |
979 |
|
yy=`echo $SKIPDIRS | grep -c $xx` |
980 |
|
if test $yy = 0 ; then |
981 |
|
if test -d $xx ; then |
982 |
|
yy=`echo $TESTDIRS | grep -c $xx` |
983 |
|
if test $yy = 0 ; then TESTDIRS=${TESTDIRS}" "$xx ; fi |
984 |
|
else count=1 ; |
985 |
|
echo ""; echo -n " -- skip \"$xx\" (not a directory !)" |
986 |
|
fi |
987 |
|
else |
988 |
|
if test $count = 1 ; then echo -n ", \"$xx\"" |
989 |
|
else count=1 ; echo "" ; echo -n " skip: \"$xx\"" |
990 |
|
fi |
991 |
|
fi |
992 |
|
done |
993 |
|
if test $count = 1 ; then echo "" ; echo -n " ... " ; fi |
994 |
|
#echo 'TESTDIRS='${TESTDIRS}'<' |
995 |
|
|
996 |
if test "x$OPTFILE" = xNONE -a "x$MITGCM_OF" != x ; then |
if test "x$OPTFILE" = xNONE -a "x$MITGCM_OF" != x ; then |
997 |
OPTFILE=$MITGCM_OF |
OPTFILE=$MITGCM_OF |
998 |
fi |
fi |
999 |
|
|
1000 |
if test "x$ADM" = xt -a "x$COMMAND" = x ; then |
RUNLOG="run.log" |
1001 |
COMMAND="./mitgcmuv_ad > output.txt_adm 2>&1" |
OUTPUTFILE=$ref_outp |
|
fi |
|
|
|
|
1002 |
if test "x$COMMAND" = x ; then |
if test "x$COMMAND" = x ; then |
1003 |
COMMAND="make output.txt" |
COMMAND="./$EXECUTABLE > $OUTPUTFILE" |
1004 |
|
fi |
1005 |
|
if test "x$MPI" = xt ; then |
1006 |
|
OUTPUTFILE="STDOUT.0000" |
1007 |
fi |
fi |
1008 |
|
|
1009 |
echo "OK" |
echo "OK (COMMAND= $COMMAND )" |
1010 |
|
|
1011 |
|
# set the Default List of output variables to be checked: |
1012 |
|
# (use default or load experiment-specific list from file "tr_checklist") |
1013 |
|
# content : 1rst = main variable used to decide if it pass or FAIL |
1014 |
|
# others = number of matching digits to be printed in summary.txt |
1015 |
|
if test "x$ADM" = x -a "x$OADM" = x; then |
1016 |
|
DEF_CHECK_LIST='PS PS T+ S+ U+ V+ pt1+ pt2+ pt3+ pt4+ pt5+' |
1017 |
|
EMPTY_RESULTS='.. .. .. .. .. .. .. .. .. .. .. .. .. .. .. .. ..' |
1018 |
|
LEN_CHECK_LIST=`echo $DEF_CHECK_LIST | sed 's/ [a-zA-Z0-9]*+/&mn &mx &av &sd/g' | awk '{print NF-1}'` |
1019 |
|
ii=`echo $EMPTY_RESULTS | awk '{print NF}'` |
1020 |
|
EMPTY_RESULTS=$EMPTY_RESULTS`expr $LEN_CHECK_LIST - $ii | awk 'BEGIN{FS=":"}{for(i=1;i<=$1;i++){printf " ."}}'` |
1021 |
|
else |
1022 |
|
DEF_CHECK_LIST='Grad Cost Grad' |
1023 |
|
EMPTY_RESULTS='.. ..' |
1024 |
|
LEN_CHECK_LIST=`echo $DEF_CHECK_LIST | sed 's/ [a-zA-Z0-9]*+/&mn &mx &av &sd/g' | awk '{print NF-1}'` |
1025 |
|
fi |
1026 |
|
|
1027 |
# create the FORTRAN comparison code |
# create the FORTRAN comparison code |
1028 |
createcodelet |
createcodelet |
1029 |
|
|
1030 |
# build the mpack utility |
# build the mpack utility (if ADDRESSES = NONE, do it to test the build) |
1031 |
if test "x$ADDRESSES" = xNONE -o "x$ADDRESSES" = x ; then |
if test "x$ADDRESSES" = x ; then |
1032 |
echo "skipping mpack build" |
echo "skipping mpack build" |
1033 |
else |
else |
1034 |
build_mpack |
build_mpack |
1035 |
fi |
fi |
1036 |
|
|
1037 |
# Create a uniquely named directory to store results |
# Create a uniquely named directory to store results |
1038 |
|
CMDLINE=$0 |
1039 |
|
for xx in "$@" ; do nw=`echo $xx | wc -w` |
1040 |
|
if test $nw = '1' ; then CMDLINE="$CMDLINE $xx" |
1041 |
|
else CMDLINE="$CMDLINE '$xx'" ; fi |
1042 |
|
done |
1043 |
|
#for xx in "$@" ; do CMDLINE="$CMDLINE '$xx'" ; done |
1044 |
MACH=`hostname` |
MACH=`hostname` |
1045 |
UNAMEA=`uname -a` |
UNAMEA=`uname -a` |
1046 |
DATE=`date +%Y%m%d` |
DATE=`date +%Y%m%d` |
1047 |
BASE="tr_"$MACH"_"$DATE"_" |
BASE="tr_"$MACH"_"$DATE"_" |
1048 |
|
if test "x$OUTDIR" != x ; then |
1049 |
|
BASE="tr_"$OUTDIR"_"$DATE"_" |
1050 |
|
else |
1051 |
|
short_name=`hostname | sed 's/\..*$//'` |
1052 |
|
BASE="tr_"$short_name"_"$DATE"_" |
1053 |
|
fi |
1054 |
DNUM=0 |
DNUM=0 |
1055 |
DRESULTS="$BASE$DNUM" |
DRESULTS="$BASE$DNUM" |
1056 |
while test -e $DRESULTS ; do |
while test -e $DRESULTS ; do |
1064 |
exit 1 |
exit 1 |
1065 |
fi |
fi |
1066 |
SUMMARY="$DRESULTS/summary.txt" |
SUMMARY="$DRESULTS/summary.txt" |
|
printf "Start time: " >> $SUMMARY |
|
1067 |
start_date=`date` |
start_date=`date` |
1068 |
echo $start_date > $SUMMARY |
echo $start_date > $SUMMARY |
1069 |
|
echo 'run:' $CMDLINE >> $SUMMARY |
1070 |
|
echo 'on :' $UNAMEA >> $SUMMARY |
1071 |
|
|
1072 |
of_path= |
of_path= |
1073 |
if test "x$OPTFILE" != xNONE ; then |
if test "x$OPTFILE" != xNONE ; then |
1096 |
fi |
fi |
1097 |
echo |
echo |
1098 |
echo >> $SUMMARY |
echo >> $SUMMARY |
1099 |
if test "x$ADM" = x ; then |
if test "x$ADM" = x -a "x$OADM" = x; then |
1100 |
cat << EOF | tee -a $SUMMARY |
if [ $MATCH_CRIT -lt 10 ] ; |
1101 |
T S U V |
then line_0="default "$MATCH_CRIT ; |
1102 |
G D M c m s m s m s m s |
else line_0="default "$MATCH_CRIT ; fi |
1103 |
E p a R g m m e . m m e . m m e . m m e . |
line_0="$line_0 ----T----- ----S----- ----U----- ----V-----" |
1104 |
N n k u 2 i a a d i a a d i a a d i a a d |
# line_0=" ----T----- ----S----- ----U----- ----V-----" |
1105 |
2 d e n d n x n . n x n . n x n . n x n . |
line_1="G D M c m s m s m s m s" |
1106 |
|
line_2="E p a R g m m e . m m e . m m e . m m e ." |
1107 |
EOF |
line_3="N n k u 2 i a a d i a a d i a a d i a a d" |
1108 |
|
line_4="2 d e n d n x n . n x n . n x n . n x n ." |
1109 |
|
for ii in $PTRACERS_NUM ; do |
1110 |
|
line_0="$line_0 --PTR 0"$ii"--" |
1111 |
|
line_1="$line_1 m s" |
1112 |
|
line_2="$line_2 m m e ." |
1113 |
|
line_3="$line_3 i a a d" |
1114 |
|
line_4="$line_4 n x n ." |
1115 |
|
done |
1116 |
|
echo "$line_0" | tee -a $SUMMARY |
1117 |
|
echo "$line_1" | tee -a $SUMMARY |
1118 |
|
echo "$line_2" | tee -a $SUMMARY |
1119 |
|
echo "$line_3" | tee -a $SUMMARY |
1120 |
|
echo "$line_4" | tee -a $SUMMARY |
1121 |
|
echo " " | tee -a $SUMMARY |
1122 |
else |
else |
1123 |
echo "ADJOINT=true" >> $SUMMARY |
echo "ADJOINT=true" >> $SUMMARY |
1124 |
echo >> $SUMMARY |
echo >> $SUMMARY |
1125 |
|
if [ $MATCH_CRIT -lt 10 ] ; |
1126 |
|
then line_0="default "$MATCH_CRIT ; |
1127 |
|
else line_0="default "$MATCH_CRIT ; fi |
1128 |
|
echo "$line_0" | tee -a $SUMMARY |
1129 |
cat << EOF | tee -a $SUMMARY |
cat << EOF | tee -a $SUMMARY |
1130 |
G D M C G |
G D M C G |
1131 |
E p a R o r |
E p a R o r |
1138 |
# ...and each test directory... |
# ...and each test directory... |
1139 |
for dir in $TESTDIRS ; do |
for dir in $TESTDIRS ; do |
1140 |
|
|
1141 |
|
# set builddir & rundir: |
1142 |
|
builddir="build" |
1143 |
|
if test ! -d $dir/$builddir ; then mkdir $dir/$builddir ; fi |
1144 |
|
rundir="run" |
1145 |
|
if test ! -d $dir/$rundir ; then |
1146 |
|
rundir=$builddir |
1147 |
|
fi |
1148 |
|
CODE_DIR=$dir/$code_dir |
1149 |
|
BUILD_DIR=$dir/$builddir |
1150 |
|
|
1151 |
# Cleanup only! |
# Cleanup only! |
1152 |
if test "x$CLEANUP" = xt ; then |
if test "x$CLEANUP" = xt ; then |
1153 |
if test -r $dir/build/Makefile ; then |
if test -r $BUILD_DIR/Makefile ; then |
1154 |
( cd $dir/build ; make CLEAN ) |
echo ' ------ clean dir:' $dir/$builddir |
1155 |
|
( cd $BUILD_DIR ; make CLEAN ) |
1156 |
fi |
fi |
1157 |
if test -r $dir/input/Makefile ; then |
if test -d $dir/$rundir/CVS ; then |
1158 |
( cd $dir/input ; make CLEAN ) |
echo ' ------ clean dir:' $dir/$rundir |
1159 |
|
run_clean $dir/$rundir |
1160 |
fi |
fi |
1161 |
|
( |
1162 |
|
cd $dir |
1163 |
|
rm -rf tr_run.* |
1164 |
|
) |
1165 |
continue |
continue |
1166 |
fi |
fi |
1167 |
|
|
1168 |
# Verify that the testdir exists and contains previous |
# Verify that the testdir exists and contains previous |
1169 |
# results in the correct location--or skip this directory! |
# results in the correct location--or skip this directory! |
1170 |
fout= |
fout=$dir"/results/"$ref_outp |
|
if test "x$ADM" = x ; then |
|
|
fout=$dir"/results/output.txt" |
|
|
else |
|
|
fout=$dir"/results_ad/output.txt_adm" |
|
|
fi |
|
1171 |
if test ! -r $fout ; then |
if test ! -r $fout ; then |
1172 |
echo "can't read \"$fout\" -- skipping $dir" |
echo "can't read \"$fout\" -- skipping $dir" |
1173 |
continue |
continue |
1174 |
fi |
fi |
1175 |
|
|
1176 |
builddir="input" |
# Check for specific files for particular type of run |
|
rundir="input" |
|
|
use_seperate_build=0 |
|
|
if test -d $dir/build -a -r $dir/build ; then |
|
|
builddir="build" |
|
|
rundir="build" |
|
|
use_seperate_build=1 |
|
|
linkdata $use_seperate_build $dir/$rundir |
|
|
fi |
|
|
|
|
|
# Check whether there are "extra runs" for this testdir |
|
|
extra_runs= |
|
|
if test "x$ADM" = x -a "x$use_seperate_build" = x1 ; then |
|
|
ex_run_dirs=`( cd $dir ; echo input.* )` |
|
|
echo "ex_run_dirs='$ex_run_dirs'" |
|
|
for exd in $ex_run_dirs ; do |
|
|
name=`echo $exd | sed -e 's/input.//g'` |
|
|
outf="$dir/results/output.txt.$name" |
|
|
if test -f $outf -a -r $outf ; then |
|
|
extra_runs="$extra_runs $name" |
|
|
fi |
|
|
done |
|
|
fi |
|
|
|
|
|
if test "x$ADM" = x ; then |
|
|
code_dir=code |
|
|
CODE_DIR=$dir/code |
|
|
else |
|
|
code_dir=code_ad |
|
|
CODE_DIR=$dir/code_ad |
|
|
fi |
|
|
BUILD_DIR=$dir/$builddir |
|
1177 |
|
|
1178 |
if test ! -r $CODE_DIR"/SIZE.h_mpi" -a "x$MPI" = "xt" ; then |
if test ! -r $CODE_DIR"/SIZE.h_mpi" -a "x$MPI" = "xt" ; then |
1179 |
echo "can't find \"$CODE_DIR/SIZE.h_mpi\" -- skipping $dir" |
echo "can't find \"$CODE_DIR/SIZE.h_mpi\" -- skipping $dir" |
1180 |
continue |
continue |
1181 |
fi |
fi |
1182 |
|
if test ! -r $dir"/input/eedata.mth" -a "x$MULTI_THREAD" = "xt" ; then |
1183 |
|
echo "can't find \"$dir/input/eedata.mth\" -- skipping $dir" |
1184 |
|
continue |
1185 |
|
fi |
1186 |
|
if test "x$MPI" = "xt" -a "x$MULTI_THREAD" = "xt" ; then |
1187 |
|
retv=`check_eedata $CODE_DIR"/SIZE.h_mpi" $dir"/input/eedata.mth"` |
1188 |
|
if test $retv != 0 ; then |
1189 |
|
echo "input/eedata.mth tiling misfit -- skipping $dir" |
1190 |
|
continue |
1191 |
|
fi |
1192 |
|
fi |
1193 |
|
|
1194 |
|
# Check whether there are "extra runs" for this testdir |
1195 |
|
extra_runs= |
1196 |
|
ex_run_dirs=`( cd $dir ; echo $inputdir.* )` |
1197 |
|
#echo "ex_run_dirs='$ex_run_dirs'" |
1198 |
|
for exd in $ex_run_dirs ; do |
1199 |
|
name=`echo $exd | sed -e "s/$inputdir\.//"` |
1200 |
|
refExOut=`echo $ref_outp | sed "s/\./.${name}./"` |
1201 |
|
outf="$dir/results/$refExOut" |
1202 |
|
if test -f $outf -a -r $outf ; then |
1203 |
|
if test "x$MULTI_THREAD" = "xt" ; then |
1204 |
|
if test -r $dir"/"$exd"/eedata.mth" ; then |
1205 |
|
if test "x$MPI" = "xt" ; then |
1206 |
|
retv=`check_eedata $CODE_DIR"/SIZE.h_mpi" $dir"/"$exd"/eedata.mth"` |
1207 |
|
if test $retv = 0 ; then |
1208 |
|
extra_runs="$extra_runs $name" |
1209 |
|
else |
1210 |
|
echo $exd"/eedata.mth tiling misfit -- skipping $dir" |
1211 |
|
fi |
1212 |
|
else |
1213 |
|
extra_runs="$extra_runs $name" |
1214 |
|
fi |
1215 |
|
#else echo $dir"/"$exd"/eedata.mth: not found" |
1216 |
|
fi |
1217 |
|
else |
1218 |
|
extra_runs="$extra_runs $name" |
1219 |
|
fi |
1220 |
|
fi |
1221 |
|
done |
1222 |
|
|
1223 |
echo "-------------------------------------------------------------------------------" |
echo "-------------------------------------------------------------------------------" |
1224 |
echo |
echo |
1225 |
echo "Experiment: $dir" |
if test "x$extra_runs" = "x" ; then |
1226 |
|
echo "Experiment: $dir" |
1227 |
|
else |
1228 |
|
echo "Experiment: $dir ; extra_runs=$extra_runs" |
1229 |
|
fi |
1230 |
echo |
echo |
1231 |
unset genmake makedepend make run |
unset genmake makedepend make run |
1232 |
results='-- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- --' |
results=$EMPTY_RESULTS |
1233 |
|
|
1234 |
# Create an output dir for each OPTFILE/tdir combination |
# Create an output dir for each OPTFILE/tdir combination |
1235 |
rel_CDIR=$DRESULTS"/"$dir |
rel_CDIR=$DRESULTS"/"$dir |
1237 |
CDIR=`pwd`"/$rel_CDIR" |
CDIR=`pwd`"/$rel_CDIR" |
1238 |
|
|
1239 |
if test "x$CLEANUP" = xt ; then |
if test "x$CLEANUP" = xt ; then |
1240 |
makeclean $dir/$builddir |
echo '====>>> this is to check that we never go through this part <<< ===' |
1241 |
|
makeclean $dir/$builddir \ |
1242 |
|
&& run_clean $dir/$rundir |
1243 |
else |
else |
1244 |
genmakemodel $dir/$builddir && genmake=Y \ |
genmakemodel $dir/$builddir && genmake=Y \ |
1245 |
&& makeclean $dir/$builddir \ |
&& makeclean $dir/$builddir \ |
1246 |
|
&& run_clean $dir/$rundir \ |
1247 |
&& symlink_mpifiles $dir $code_dir $builddir \ |
&& symlink_mpifiles $dir $code_dir $builddir \ |
1248 |
&& makedependmodel $dir/$builddir && makedepend=Y \ |
&& makedependmodel $dir/$builddir && makedepend=Y \ |
1249 |
&& makemodel $dir/$builddir && make=Y \ |
&& makemodel $dir/$builddir && make=Y \ |
1250 |
&& linkdata $use_seperate_build $dir/$rundir \ |
&& linkdata $dir/$rundir $inputdir input \ |
1251 |
&& runmodel $dir/$rundir && run=Y \ |
&& runmodel $dir/$rundir && run=Y \ |
1252 |
&& results=`testoutput $dir $rundir` |
&& results=`testoutput_run $dir $rundir $ref_outp` |
1253 |
fi |
fi |
1254 |
|
|
1255 |
echo |
echo |
|
if test "x$ADM" = x ; then |
|
1256 |
fres=`formatresults $dir ${genmake:-N} ${makedepend:-N} ${make:-N} ${run:-N} $results` |
fres=`formatresults $dir ${genmake:-N} ${makedepend:-N} ${make:-N} ${run:-N} $results` |
1257 |
echo |
echo |
1258 |
echo "$fres" >> $SUMMARY |
echo "$fres" | sed 's/ 99/ --/g' | sed 's/ > />/' | sed 's/ < /</' >> $SUMMARY |
1259 |
echo "fresults='$fres'" > $CDIR"/summary.txt" |
touch $CDIR"/summary.txt" |
1260 |
|
echo "fresults='$fres'" | sed 's/ 99/ --/g' >> $CDIR"/summary.txt" |
1261 |
echo "MACH='$MACH'" >> $CDIR"/summary.txt" |
echo "MACH='$MACH'" >> $CDIR"/summary.txt" |
1262 |
echo "UNAMEA='$UNAMEA'" >> $CDIR"/summary.txt" |
echo "UNAMEA='$UNAMEA'" >> $CDIR"/summary.txt" |
1263 |
echo "DATE='$DATE'" >> $CDIR"/summary.txt" |
echo "DATE='$DATE'" >> $CDIR"/summary.txt" |
1264 |
echo "tdir='$dir'" >> $CDIR"/summary.txt" |
echo "tdir='$dir'" >> $CDIR"/summary.txt" |
1265 |
|
if test "x$ADM" = xt ; then |
1266 |
|
head -1 $dir/$builddir/taf_ad.log >> $CDIR"/summary.txt" |
1267 |
|
grep -A3 'Seconds in section "ALL' $dir/$rundir/$OUTPUTFILE \ |
1268 |
|
>> $CDIR"/summary.txt" |
1269 |
|
fi |
1270 |
|
|
|
OLD_COMMAND=$COMMAND |
|
|
COMMAND="./mitgcmuv > output.txt" |
|
1271 |
for ex in $extra_runs ; do |
for ex in $extra_runs ; do |
1272 |
test -e "$dir/tr_run" && rm -rf "$dir/tr_run" |
unset run |
1273 |
mkdir "$dir/tr_run" |
results=$EMPTY_RESULTS |
1274 |
links=`( cd "$dir/input" > /dev/null 2>&1 ; ls -1 | grep -v CVS )` |
# reference output file |
1275 |
( |
refExOut=`echo $ref_outp | sed "s/\./.${ex}./g"` |
1276 |
cd "$dir/tr_run" |
# Create an output dir for each OPTFILE/tdir.ex combination |
1277 |
for i in $links; do |
rel_CDIR=$DRESULTS"/"$dir"."$ex |
1278 |
ln -s ../input/$i $i |
mkdir $rel_CDIR |
1279 |
done |
CDIR=`pwd`"/$rel_CDIR" |
1280 |
) |
test ! -e "$dir/tr_run.$ex" && mkdir "$dir/tr_run.$ex" |
1281 |
links=`( cd "$dir/input.$ex" > /dev/null 2>&1 ; ls -1 | grep -v CVS )` |
run_clean $dir/tr_run.$ex |
1282 |
( |
linkdata $dir/tr_run.$ex $inputdir.$ex $inputdir input |
1283 |
cd "$dir/tr_run" |
runmodel $dir/tr_run.$ex && run=Y \ |
1284 |
for i in $links; do |
&& results=`testoutput_run $dir tr_run.$ex $refExOut` |
|
test -e $i && rm -f $i |
|
|
ln -s ../input.$ex/$i $i |
|
|
done |
|
|
ln -s ../$builddir/mitgcmuv mitgcmuv |
|
|
) |
|
|
runmodel $dir/tr_run && run=Y \ |
|
|
&& results=`testoutput $dir tr_run "."$ex` |
|
|
fres=`printf '%s %s %s %s' ${genmake:-N} ${makedepend:-N} ${make:-N} ${run:-N}` |
|
1285 |
fres=`formatresults $dir ${genmake:-N} ${makedepend:-N} ${make:-N} ${run:-N} $results` |
fres=`formatresults $dir ${genmake:-N} ${makedepend:-N} ${make:-N} ${run:-N} $results` |
1286 |
fres="$fres.$ex" |
fres="$fres.$ex" |
1287 |
echo |
echo |
1288 |
echo "$fres" >> $SUMMARY |
echo "$fres" | sed 's/ 99/ --/g' | sed 's/ > />/' | sed 's/ < /</' >> $SUMMARY |
1289 |
echo "fresults='$fres'" > $CDIR"/summary.txt" |
touch $CDIR"/summary.txt" |
1290 |
|
echo "fresults='$fres'" | sed 's/ 99/ --/g' >> $CDIR"/summary.txt" |
1291 |
echo "MACH='$MACH'" >> $CDIR"/summary.txt" |
echo "MACH='$MACH'" >> $CDIR"/summary.txt" |
1292 |
echo "UNAMEA='$UNAMEA'" >> $CDIR"/summary.txt" |
echo "UNAMEA='$UNAMEA'" >> $CDIR"/summary.txt" |
1293 |
echo "DATE='$DATE'" >> $CDIR"/summary.txt" |
echo "DATE='$DATE'" >> $CDIR"/summary.txt" |
1294 |
echo "tdir='$dir'" >> $CDIR"/summary.txt" |
echo "tdir='$dir.$ex'" >> $CDIR"/summary.txt" |
1295 |
|
if test "x$ADM" = xt ; then |
1296 |
|
head -1 $dir/$builddir/taf_ad.log >> $CDIR"/summary.txt" |
1297 |
|
grep -A3 'Seconds in section "ALL' $dir/tr_run.$ex/$OUTPUTFILE \ |
1298 |
|
>> $CDIR"/summary.txt" |
1299 |
|
fi |
1300 |
|
if test "x$POSTCLEAN" = xt ; then |
1301 |
|
run_clean $dir/tr_run.$ex |
1302 |
|
fi |
1303 |
done |
done |
1304 |
COMMAND=$OLD_COMMAND |
|
1305 |
else |
#postclean $dir/$builddir |
1306 |
fres=`printf '%s %s %s %s' ${genmake:-N} ${makedepend:-N} ${make:-N} ${run:-N}` |
if test "x$POSTCLEAN" = xt ; then |
1307 |
fres=$fres"$results $dir" |
makeclean $dir/$builddir \ |
1308 |
echo |
&& run_clean $dir/$rundir |
|
echo "$fres" >> $SUMMARY |
|
|
echo "fresults='$fres'" > $CDIR"/summary.txt" |
|
|
echo "MACH='$MACH'" >> $CDIR"/summary.txt" |
|
|
echo "UNAMEA='$UNAMEA'" >> $CDIR"/summary.txt" |
|
|
echo "DATE='$DATE'" >> $CDIR"/summary.txt" |
|
|
echo "tdir='$dir'" >> $CDIR"/summary.txt" |
|
1309 |
fi |
fi |
1310 |
|
|
1311 |
echo "-------------------------------------------------------------------------------" |
echo "-------------------------------------------------------------------------------" |
1313 |
done |
done |
1314 |
|
|
1315 |
printf "Start time: " >> $SUMMARY |
printf "Start time: " >> $SUMMARY |
1316 |
echo $start_date >> $SUMMARY |
echo "$start_date" >> $SUMMARY |
1317 |
printf "End time: " >> $SUMMARY |
printf "End time: " >> $SUMMARY |
1318 |
date >> $SUMMARY |
date >> $SUMMARY |
1319 |
|
|
1325 |
if test "x$HAVE_MPACK" = xt ; then |
if test "x$HAVE_MPACK" = xt ; then |
1326 |
tar -cf $DRESULTS".tar" $DRESULTS > /dev/null 2>&1 \ |
tar -cf $DRESULTS".tar" $DRESULTS > /dev/null 2>&1 \ |
1327 |
&& gzip $DRESULTS".tar" \ |
&& gzip $DRESULTS".tar" \ |
1328 |
&& $MPACK -s MITgcm-test -m 1500000 $DRESULTS".tar.gz" $ADDRESSES |
&& $MPACK -s MITgcm-test -m 3555000 $DRESULTS".tar.gz" $ADDRESSES |
1329 |
RETVAL=$? |
RETVAL=$? |
1330 |
if test "x$RETVAL" != x0 ; then |
if test "x$RETVAL" != x0 ; then |
1331 |
echo |
echo |
1344 |
fi |
fi |
1345 |
fi |
fi |
1346 |
|
|
1347 |
# rm -f tmp_cmpnum.f a.out |
rm -f tr_cmpnum.c tr_cmpnum |
|
rm -f tmp_cmpnum.c tmp_cmpnum |
|
1348 |
|
|
1349 |
if test "x$CLEANUP" != xt ; then |
if test "x$CLEANUP" != xt ; then |
1350 |
cat $SUMMARY |
cat $SUMMARY | sed 's/ \. \. \. \. \. \. \. \. \. \. \. \. //' |
1351 |
if test -e tr_out.txt ; then |
if test -e tr_out.txt ; then |
1352 |
mv tr_out.txt tr_out.txt.old |
mv tr_out.txt tr_out.txt.old |
1353 |
fi |
fi |
1354 |
cat $SUMMARY > tr_out.txt |
cat $SUMMARY | sed '/^[YN] [YN] [YN] [YN]/ s/ \. //g' > tr_out.txt |
1355 |
|
fi |
1356 |
|
|
1357 |
|
if test "x$DELDIR" = xt ; then |
1358 |
|
rm -rf $DRESULTS |
1359 |
fi |
fi |
1360 |
|
|