11 |
echo |
echo |
12 |
echo "where possible OPTIONS are:" |
echo "where possible OPTIONS are:" |
13 |
echo " (-help|-h) print usage" |
echo " (-help|-h) print usage" |
14 |
echo " (-mpi) use MPI input files" |
echo " (-mth) run multi threaded (using eedata.mth)" |
15 |
|
echo " (-mpi) compile and run using MPI" |
16 |
echo " (-ieee|-noieee) if possible, use IEEE compiler flags" |
echo " (-ieee|-noieee) if possible, use IEEE compiler flags" |
17 |
echo " (DEF=\"-ieee\")" |
echo " (DEF=\"-ieee\")" |
18 |
echo " (-optfile=|-of=)STRING list of optfiles to use" |
echo " (-of=|-optfile=)STRING list of optfiles to use" |
19 |
echo " (-a|-addr) STRING list of email recipients" |
echo " (-a|-addr) STRING list of email recipients" |
20 |
echo " (DEF=\"edhill@mitgcm.org\")" |
echo " (DEF=\"edhill@mitgcm.org\")" |
21 |
echo " (-t|-tdir) STRING list of test dirs to use" |
echo " (-t|-tdir) STRING list of group and/or exp. dirs to test" |
22 |
echo " (DEF=\"\" which builds all)" |
echo " (recognized groups: basic, tutorials)" |
23 |
|
echo " (DEF=\"\" which test all)" |
24 |
|
echo " (-skd|-skipdir) STRING list of exp. dirs to skip" |
25 |
|
echo " (DEF=\"\" which test all)" |
26 |
echo " (-b|-bash) STRING preferred location of a \"bash\" or" |
echo " (-b|-bash) STRING preferred location of a \"bash\" or" |
27 |
echo " Bourne-compatible \"sh\" shell" |
echo " Bourne-compatible \"sh\" shell" |
28 |
echo " (DEF=\"\" for \"bash\")" |
echo " (DEF=\"\" for \"bash\")" |
31 |
echo " (DEF=\"make output.txt\")" |
echo " (DEF=\"make output.txt\")" |
32 |
echo " (-m|-make) STRING command to use for \"make\"" |
echo " (-m|-make) STRING command to use for \"make\"" |
33 |
echo " (DEF=\"make\")" |
echo " (DEF=\"make\")" |
34 |
echo " (-ptracers|-ptr) STRING specify which ptracers to test" |
echo " (-odir) STRING used to build output directory name" |
35 |
|
echo " (DEF=\"hostname\")" |
36 |
|
echo " (-ptr|-ptracers) STRING specify which ptracers to test" |
37 |
echo " (DEF=\"1 2 3 4 5\")" |
echo " (DEF=\"1 2 3 4 5\")" |
38 |
echo " (-j) JOBS use \"make -j JOBS\" for parallel builds" |
echo " (-j) JOBS use \"make -j JOBS\" for parallel builds" |
39 |
echo " (-clean) *ONLY* run \"make CLEAN\"" |
echo " (-clean) *ONLY* run \"make CLEAN\"" |
40 |
echo " (-quick|-q) same as \"-nogenmake -noclean -nodepend\"" |
echo " (-q|-quick) same as \"-nogenmake -noclean -nodepend\"" |
41 |
echo " (-nogenmake|-ng) skip the genmake stage" |
echo " (-ng|-nogenmake) skip the genmake stage" |
42 |
echo " (-noclean|-nc) skip the \"make clean\" stage" |
echo " (-nc|-noclean) skip the \"make clean\" stage" |
43 |
echo " (-nodepend|-nd) skip the \"make depend\" stage" |
echo " (-nd|-nodepend) skip the \"make depend\" stage" |
44 |
echo " (-deldir|-dd) on success, delete the output directory" |
echo " (-dd|-deldir) on success, delete the output directory" |
45 |
echo |
echo |
46 |
echo "and where STRING can be a whitespace-delimited list" |
echo "and where STRING can be a whitespace-delimited list" |
47 |
echo "such as:" |
echo "such as:" |
93 |
{ |
{ |
94 |
# testoutput_for_prop dir s1 label subdir extension |
# testoutput_for_prop dir s1 label subdir extension |
95 |
# |
# |
96 |
# compares files in $dir/$subdir/output.txt and $dir/results/output.txt |
# compares files $dir/$subdir/$OUTPUTFILE and $dir/results/output.txt |
97 |
# using search strings s1 and text label |
# using search strings s1 and text label |
98 |
|
|
99 |
if [ $debug -gt 0 ]; then |
if [ $debug -gt 0 ]; then |
100 |
echo testoutput_for_prop: grep "$2" $1/$4/output.txt 1>&2 |
echo testoutput_for_prop: grep "$2" $1/$4/$OUTPUTFILE 1>&2 |
101 |
fi |
fi |
102 |
if [ -r $1/$4/output.txt ]; then |
if [ -r $1/$4/$OUTPUTFILE ]; then |
103 |
grep "$2" $1/$4/output.txt | sed 's/.*=//' | cat -n > tmp1.txt |
grep "$2" $1/$4/$OUTPUTFILE | sed 's/.*=//' | cat -n > tmp1.txt |
104 |
lncnt=`wc -l tmp1.txt | awk '{print $1}' ` |
lncntA=`wc -l tmp1.txt | awk '{print $1}' ` |
105 |
if [ $lncnt -lt 3 ]; then |
if [ $lncntA -lt 3 ]; then |
106 |
if [ $verbose -gt 0 ]; then |
if [ $verbose -gt 0 ]; then |
107 |
echo Not enough lines of output when searching for "$2" 1>&2 |
echo Not enough lines of output when searching for "$2" 1>&2 |
108 |
fi |
fi |
109 |
return 99 |
return 99 |
110 |
fi |
fi |
111 |
else |
else |
112 |
echo testoutput_for_prop: output.txt from model run was not readable 1>&2 |
echo testoutput_for_prop: $OUTPUTFILE from model run was not readable 1>&2 |
113 |
return 99 |
return 99 |
114 |
fi |
fi |
115 |
if [ $debug -gt 0 ]; then |
if [ $debug -gt 0 ]; then |
116 |
echo testoutput_for_prop: grep "$2" $1/results/output.txt$5 1>&2 |
echo testoutput_for_prop: grep "$2" $1/results/output.$5 1>&2 |
117 |
fi |
fi |
118 |
grep "$2" $1/results/output.txt$5 | sed 's/.*=//' | cat -n > tmp2.txt |
grep "$2" $1/results/output.$5 | sed 's/.*=//' | cat -n > tmp2.txt |
119 |
lncnt=`wc -l tmp2.txt | awk '{print $1}' ` |
lncntB=`wc -l tmp2.txt | awk '{print $1}' ` |
120 |
if [ $lncnt -lt 3 ]; then |
if [ $lncntB -lt 3 ]; then |
121 |
if [ $verbose -gt 0 ]; then |
if [ $verbose -gt 0 ]; then |
122 |
echo Not enough lines of output when searching for "$2" 1>&2 |
echo Not enough lines of output when searching for "$2" 1>&2 |
123 |
fi |
fi |
124 |
return 99 |
return 99 |
125 |
fi |
fi |
126 |
|
if [ $lncntA -ne $lncntB ]; then |
127 |
|
if [ $verbose -gt 0 ]; then |
128 |
|
echo Not same Nb of lines when searching for "$2" ":" $lncntA $lncntB 1>&2 |
129 |
|
fi |
130 |
|
return 99 |
131 |
|
fi |
132 |
|
has_nan=`cat tmp1.txt | grep -i nan | wc -l` |
133 |
|
if [ $has_nan -gt 0 ] ; then |
134 |
|
echo testoutput_for_prop: $OUTPUTFILE contains $has_nan NaN values 1>&2 |
135 |
|
return 99 |
136 |
|
fi |
137 |
|
has_inf=`cat tmp1.txt | grep -i inf | wc -l` |
138 |
|
if [ $has_inf -gt 0 ] ; then |
139 |
|
echo testoutput_for_prop: $OUTPUTFILE contains $has_inf Inf values 1>&2 |
140 |
|
return 99 |
141 |
|
fi |
142 |
if [ $debug -gt 0 ]; then |
if [ $debug -gt 0 ]; then |
143 |
echo testoutput_for_prop: join tmp1.txt tmp2.txt 1>&2 |
echo testoutput_for_prop: join tmp1.txt tmp2.txt 1>&2 |
144 |
fi |
fi |
185 |
|
|
186 |
testoutput_ad() |
testoutput_ad() |
187 |
{ |
{ |
188 |
grep $3 $1/results_ad/output.txt_adm | awk '{print NR " " $5}' > t05.txt |
grep $3 $1/results_ad/output_adm.txt | awk '{print NR " " $5}' > t05.txt |
189 |
grep $3 $1/$2/output.txt_adm | awk '{print NR " " $5}' > t15.txt |
grep $3 $1/$2/$OUTPUTFILE | awk '{print NR " " $5}' > t15.txt |
190 |
grep $3 $1/results_ad/output.txt_adm | awk '{print NR " " $6}' > t06.txt |
grep $3 $1/results_ad/output_adm.txt | awk '{print NR " " $6}' > t06.txt |
191 |
grep $3 $1/$2/output.txt_adm | awk '{print NR " " $6}' > t16.txt |
grep $3 $1/$2/$OUTPUTFILE | awk '{print NR " " $6}' > t16.txt |
192 |
join t05.txt t15.txt > t5.txt |
join t05.txt t15.txt > t5.txt |
193 |
join t06.txt t16.txt > t6.txt |
join t06.txt t16.txt > t6.txt |
194 |
echo "-1" >> t5.txt |
echo "-1" >> t5.txt |
308 |
command="$command --mods=../code" |
command="$command --mods=../code" |
309 |
else |
else |
310 |
command="$command --mods=../code_ad" |
command="$command --mods=../code_ad" |
|
command="$command -adof=../../../tools/adjoint_options/adjoint_staf" |
|
311 |
fi |
fi |
312 |
if test "x$OPTFILE" != xNONE ; then |
if test "x$OPTFILE" != xNONE ; then |
313 |
command="$command --optfile=$OPTFILE" |
command="$command --optfile=$OPTFILE" |
315 |
if test "x$IEEE" != x ; then |
if test "x$IEEE" != x ; then |
316 |
command="$command -ieee" |
command="$command -ieee" |
317 |
fi |
fi |
318 |
|
if test "x$MPI" = xt ; then |
319 |
|
command="$command -mpi" |
320 |
|
fi |
321 |
printf 'genmake ... ' 1>&2 |
printf 'genmake ... ' 1>&2 |
322 |
$command > make.log 2>&1 |
$command > make.log 2>&1 |
323 |
RETVAL=$? |
RETVAL=$? |
339 |
{ |
{ |
340 |
# makeclean directory |
# makeclean directory |
341 |
if test "x$NOCLEAN" = xt ; then |
if test "x$NOCLEAN" = xt ; then |
342 |
echo "make CLEAN skipped!" |
echo "make Clean skipped!" |
343 |
else |
else |
344 |
( |
( |
345 |
cd $1; |
cd $1; |
346 |
if test -e output.txt ; then |
#if test -e $OUTPUTFILE ; then rm -f $OUTPUTFILE ; fi |
|
rm -f output.txt |
|
|
fi |
|
|
printf 'make CLEAN ... ' 2>&1 |
|
347 |
if test -r Makefile ; then |
if test -r Makefile ; then |
348 |
$MAKE CLEAN >> make.log 2>&1 |
printf 'clean build-dir: make Clean ... ' 2>&1 |
349 |
|
$MAKE Clean >> make.log 2>&1 |
350 |
RETVAL=$? |
RETVAL=$? |
351 |
if test "x$RETVAL" != x0 ; then |
if test "x$RETVAL" != x0 ; then |
352 |
tail make.log |
tail make.log |
353 |
echo "makeclean: \"make CLEAN\" failed" 1>&2 |
echo "makeclean: \"make Clean\" failed" 1>&2 |
354 |
cp make.log $CDIR"/make.log" |
cp make.log $CDIR"/make.log" |
355 |
return 1 |
return 1 |
356 |
fi |
fi |
361 |
fi |
fi |
362 |
} |
} |
363 |
|
|
364 |
|
run_clean() |
365 |
|
{ |
366 |
|
# run_clean directory |
367 |
|
if test "x$NOCLEAN" = xt ; then |
368 |
|
echo "run_clean skipped!" |
369 |
|
else |
370 |
|
( |
371 |
|
cd $1; |
372 |
|
printf 'clean run-dir ... ' 2>&1 |
373 |
|
# part of what is done after "make clean" when doing "make CLEAN" |
374 |
|
find . -name "*.meta" -exec rm {} \; |
375 |
|
find . -name "*.data" -exec rm {} \; |
376 |
|
find . -name "fort.*" -exec rm {} \; |
377 |
|
find . -type l -exec rm {} \; |
378 |
|
rm -f $EXECUTABLE *.txt STD* *diagnostics.log datetime |
379 |
|
rm -rf mnc_test_* |
380 |
|
echo successful 1>&2 |
381 |
|
exit 0 |
382 |
|
) |
383 |
|
fi |
384 |
|
} |
385 |
|
|
386 |
makedependmodel() |
makedependmodel() |
387 |
{ |
{ |
388 |
# makedependmodel directory |
# makedependmodel directory |
485 |
|
|
486 |
linkdata() |
linkdata() |
487 |
{ |
{ |
488 |
# linkdata flag |
# linkdata run_dir input_dir_1 input_dir_2 ... |
489 |
# |
# |
490 |
# symbolically link data files to run directory |
# symbolically link data files to run directory |
491 |
if test "x$1" = x1 ; then |
if test -d $1 ; then |
492 |
( |
( |
493 |
cd $2 |
cd $1 ; shift |
494 |
if test "x$ADM" = x ; then |
if test -r "../"$1"/eedata.mth" ; then |
495 |
files=`( cd ../input ; ls -1 | grep -v CVS )` |
# found eedata.mth in 1rst input dir and it is readable |
496 |
for i in $files ; do |
if test "x$MULTI_THREAD" = "xt" ; then |
497 |
if test ! -d "../input/"$i ; then |
# multi-threaded test: remove symbolic link & link eedata.mth |
498 |
ln -sf "../input/"$i $i |
if test -h eedata ; then rm -f eedata ; fi |
499 |
fi |
if test ! -r eedata ; then |
500 |
done |
ln -sf "../"$1"/eedata.mth" eedata ; |
501 |
else |
printf 'eedata.mth ' 1>&2 |
|
files=`( cd ../input ; ls -1 *.bin | grep -v CVS )` |
|
|
for i in $files ; do |
|
|
if test ! -d "../input/"$i ; then |
|
|
ln -sf "../input/"$i $i |
|
502 |
fi |
fi |
503 |
done |
else |
504 |
files=`( cd ../input_ad ; ls -1 | grep -v CVS )` |
# not multi-threaded test: remove eedata symbolic link |
505 |
for i in $files ; do |
if test -h eedata ; then rm -f eedata ; fi |
506 |
if test ! -d "../input_ad/"$i ; then |
fi |
|
ln -sf "../input_ad/"$i $i |
|
|
fi |
|
|
done |
|
507 |
fi |
fi |
508 |
|
for ldir in $* ; do |
509 |
|
if test -d "../"$ldir ; then |
510 |
|
printf 'ldir='${ldir} 1>&2 |
511 |
|
files=`( cd "../"$ldir ; ls -1 | grep -v CVS )` |
512 |
|
for i in $files ; do |
513 |
|
if test ! -d "../"$ldir/$i ; then |
514 |
|
if test ! -r $i ; then |
515 |
|
printf ' '$i 1>&2 |
516 |
|
ln -sf "../"$ldir"/"$i $i |
517 |
|
fi |
518 |
|
fi |
519 |
|
done |
520 |
|
if test -x "../"$ldir"/"prepare_run ; then |
521 |
|
"../"$ldir"/"prepare_run |
522 |
|
fi |
523 |
|
printf ' ; ' 1>&2 |
524 |
|
fi |
525 |
|
done |
526 |
) |
) |
527 |
fi |
fi |
528 |
} |
} |
535 |
# (where "$COMMAND" is relative to "directory") |
# (where "$COMMAND" is relative to "directory") |
536 |
( |
( |
537 |
cd $1 |
cd $1 |
538 |
printf 'runmodel ... ' 1>&2 |
printf 'runmodel in %s ...' $1 1>&2 |
539 |
# make output.txt |
# make output.txt |
540 |
echo |
echo |
541 |
rm -f run.log |
if test ! -x $EXECUTABLE -a -x "../"$builddir"/"$EXECUTABLE ; then |
542 |
# echo "COMMAND='$COMMAND'" |
echo " link" $EXECUTABLE "from dir ../"$builddir > run.log_00 |
543 |
# echo "pwd='"`pwd`"'" |
ln -sf "../"$builddir"/"$EXECUTABLE . |
544 |
( eval $COMMAND ) > run.log 2>&1 |
fi |
545 |
RETVAL=$? |
if test ! -x $EXECUTABLE ; then |
546 |
if test "x$RETVAL" = x0 ; then |
rm -f run.log ; touch run.log |
547 |
|
if test -f run.log_00 ; then cat run.log_00 >> run.log ; fi |
548 |
|
echo " no executable:" $EXECUTABLE >> run.log |
549 |
|
RETVAL=8 |
550 |
|
ENDVAL=-1 |
551 |
|
else |
552 |
|
if test $OUTPUTFILE -ot $EXECUTABLE ; then |
553 |
|
rm -f run.log ; touch run.log |
554 |
|
if test -f run.log_00 ; then cat run.log_00 >> run.log ; fi |
555 |
|
( eval $COMMAND ) >> run.log 2>&1 |
556 |
|
RETVAL=$? |
557 |
|
else |
558 |
|
RETVAL=0 |
559 |
|
if test -f run.log ; then |
560 |
|
if test -f run.log_00 ; then cat run.log_00 >> run.log ; fi |
561 |
|
echo "---------->> $OUTPUTFILE is up to date " >> run.log 2>&1 |
562 |
|
else |
563 |
|
touch run.log |
564 |
|
if test -f run.log_00 ; then cat run.log_00 >> run.log ; fi |
565 |
|
echo "---------->> $OUTPUTFILE is up to date " >> run.log 2>&1 |
566 |
|
echo " no previous run.log: assume NORMAL END" >> run.log 2>&1 |
567 |
|
fi |
568 |
|
fi |
569 |
|
ENDVAL=`cat run.log | grep -v 'ABNORMAL END' | grep -c 'NORMAL END'` |
570 |
|
fi |
571 |
|
rm -f run.log_00 |
572 |
|
#if test "x$RETVAL" = x0 ; then |
573 |
|
if [ $RETVAL -eq 0 -a $ENDVAL -gt 0 ] ; then |
574 |
tail run.log |
tail run.log |
575 |
echo successful 1>&2 |
echo successful 1>&2 |
576 |
# === Reduce the size of the testing emails! |
# === Reduce the size of the testing emails! |
577 |
# if test "x$ADM" = x ; then |
#cp $OUTPUTFILE $CDIR"/"$OUTPUTFILE |
|
# cp output.txt $CDIR"/output.txt" |
|
|
# else |
|
|
# cp output.txt_adm $CDIR"/output.txt_adm" |
|
|
# fi |
|
578 |
if test -s STDERR.0000 ; then cp STDERR.0000 $CDIR"/STDERR.0000" ; fi |
if test -s STDERR.0000 ; then cp STDERR.0000 $CDIR"/STDERR.0000" ; fi |
579 |
return 0 |
return 0 |
580 |
else |
else |
581 |
tail run.log |
tail run.log |
582 |
echo failed 1>&2 |
echo failed '(run:' $RETVAL ' end:' $ENDVAL ')' 1>&2 |
583 |
cp run.log $CDIR"/run.log" |
cp run.log $CDIR"/run.log" |
584 |
if test -s STDERR.0000 ; then cp STDERR.0000 $CDIR"/STDERR.0000" ; fi |
if test -s STDERR.0000 ; then cp STDERR.0000 $CDIR"/STDERR.0000" ; fi |
585 |
return 1 |
return 1 |
607 |
abave = 0.5*(fabs(a)+fabs(b)); |
abave = 0.5*(fabs(a)+fabs(b)); |
608 |
if (abave > 0.0) { |
if (abave > 0.0) { |
609 |
relerr=fabs(a-b)/abave; |
relerr=fabs(a-b)/abave; |
610 |
if (relerr > 0.0) { linnum = (int)log10(relerr); } |
if (relerr > 0.0) { linnum = (int)rint(log10(relerr)); } |
611 |
else { linnum = -16 ; } |
else { linnum = -16 ; } |
612 |
best = (best > linnum) ? best : linnum; |
best = (best > linnum) ? best : linnum; |
613 |
} |
} |
617 |
return 0; |
return 0; |
618 |
} |
} |
619 |
EOF |
EOF |
620 |
cc -o tmp_cmpnum tmp_cmpnum.c -lm |
$CC -o tmp_cmpnum tmp_cmpnum.c -lm |
621 |
|
|
622 |
if [ -x ./tmp_cmpnum ]; then |
if [ -x ./tmp_cmpnum ]; then |
623 |
echo "OK" |
echo "OK" |
624 |
return 0 |
return 0 |
625 |
else |
else |
626 |
echo |
echo |
627 |
echo "ERROR: failed to compile comparison code" |
echo "ERROR: failed to compile comparison code -- please specify" |
628 |
|
echo " a C compiler using the CC environment variable." |
629 |
exit 1 |
exit 1 |
630 |
fi |
fi |
631 |
} |
} |
653 |
|
|
654 |
} |
} |
655 |
|
|
|
show_help() |
|
|
{ |
|
|
cat - << EOF |
|
|
$0 [-help] [-quick] [-verbose] dir1 [dir2] [...] |
|
|
|
|
|
-help|-h Show this help message |
|
|
-quiet Reduce the amount of output |
|
|
-verbose Produce copious amounts of output |
|
|
-debug Produce even more output which will mean nothing to most |
|
|
-force Do "make CLEAN" before compiling. This forces a complete rebuild. |
|
|
-clean Do "make CLEAN" after compiling and testing. |
|
|
-cleanup Aggresively removes all model output, executables and object files |
|
|
and then exits. Use with care. |
|
|
|
|
|
Normal usage: |
|
|
$0 * Configure, compile, run and analyze in all experiment directories |
|
|
EOF |
|
|
} |
|
|
|
|
656 |
scandirs() |
scandirs() |
657 |
{ |
{ |
658 |
if [ $# -eq 0 ]; then |
if [ $# -eq 1 ]; then |
659 |
for arg in * ; do |
for arg in * ; do |
660 |
test -d $arg/input && echo $arg |
test -d $arg/$1 && echo $arg |
661 |
done |
done |
662 |
else |
else |
663 |
echo $* |
echo $* |
664 |
fi |
fi |
665 |
} |
} |
666 |
|
|
686 |
NOGENMAKE=f |
NOGENMAKE=f |
687 |
NOCLEAN=f |
NOCLEAN=f |
688 |
NODEPEND=f |
NODEPEND=f |
689 |
|
POSTCLEAN=f |
690 |
|
|
691 |
BASH= |
BASH= |
692 |
OPTFILE=NONE |
OPTFILE=NONE |
693 |
ADDRESSES= |
ADDRESSES= |
694 |
TESTDIRS= |
TESTDIRS= |
695 |
|
SKIPDIRS= |
696 |
MPACKDIR="../tools/mpack-1.6" |
MPACKDIR="../tools/mpack-1.6" |
697 |
HAVE_MPACK= |
HAVE_MPACK= |
698 |
MPACK="$MPACKDIR/mpack" |
MPACK="$MPACKDIR/mpack" |
699 |
COMMAND= |
COMMAND= |
700 |
MAKE=make |
if test "x$MAKE" = x ; then |
701 |
|
MAKE=make |
702 |
|
fi |
703 |
|
if test "x$CC" = x ; then |
704 |
|
CC=cc |
705 |
|
fi |
706 |
JOBS= |
JOBS= |
707 |
MPI=f |
MPI=f |
708 |
|
MULTI_THREAD=f |
709 |
|
OUTDIR= |
710 |
DELDIR= |
DELDIR= |
711 |
|
|
712 |
ADM= |
ADM= |
748 |
-tdir=* | --tdir=*) |
-tdir=* | --tdir=*) |
749 |
TESTDIRS=$ac_optarg ;; |
TESTDIRS=$ac_optarg ;; |
750 |
|
|
751 |
|
-skipdir | --skipdir | -skd | --skd) |
752 |
|
ac_prev=SKIPDIRS ;; |
753 |
|
-skipdir=* | --skipdir=*) |
754 |
|
SKIPDIRS=$ac_optarg ;; |
755 |
|
|
756 |
-bash | --bash | -b | --b) |
-bash | --bash | -b | --b) |
757 |
ac_prev=BASH ;; |
ac_prev=BASH ;; |
758 |
-bash=* | --bash=*) |
-bash=* | --bash=*) |
768 |
-make=* | --make=*) |
-make=* | --make=*) |
769 |
MAKE=$ac_optarg ;; |
MAKE=$ac_optarg ;; |
770 |
|
|
771 |
|
-odir | --odir) |
772 |
|
ac_prev=OUTDIR ;; |
773 |
|
-odir=* | --odir=*) |
774 |
|
OUTDIR=$ac_optarg ;; |
775 |
|
|
776 |
-ptracers | --ptracers | -ptr | --ptr) |
-ptracers | --ptracers | -ptr | --ptr) |
777 |
ac_prev=PTRACERS_NUM ;; |
ac_prev=PTRACERS_NUM ;; |
778 |
-ptracers=* | --ptracers=* | -ptr=* | --ptr=*) |
-ptracers=* | --ptracers=* | -ptr=* | --ptr=*) |
782 |
-j=*) JOBS=$ac_optarg ;; |
-j=*) JOBS=$ac_optarg ;; |
783 |
|
|
784 |
-clean | --clean) |
-clean | --clean) |
785 |
CLEANUP=t ;; |
CLEANUP=t ; DELDIR=t ;; |
786 |
|
|
787 |
-quick | --quick | -q | --q) |
-quick | --quick | -q | --q) |
788 |
QUICK=t ;; |
QUICK=t ;; |
793 |
-nodepend | --nodepend | -nd | --nd) |
-nodepend | --nodepend | -nd | --nd) |
794 |
NODEPEND=t ;; |
NODEPEND=t ;; |
795 |
|
|
796 |
|
-postclean | --postclean | -pc | --pc) |
797 |
|
POSTCLEAN=t ;; |
798 |
|
|
799 |
-mpi) MPI=t ;; |
-mpi) MPI=t ;; |
800 |
|
|
801 |
|
-mth) MULTI_THREAD=t ;; |
802 |
|
|
803 |
-adm | -ad) ADM=t ;; |
-adm | -ad) ADM=t ;; |
804 |
|
|
805 |
-ieee) IEEE=true ;; |
-ieee) IEEE=true ;; |
832 |
fi |
fi |
833 |
|
|
834 |
if test "x$TESTDIRS" = x ; then |
if test "x$TESTDIRS" = x ; then |
835 |
TESTDIRS=`scandirs` |
if test "x$ADM" = xt ; then |
836 |
|
LIST=`scandirs results_ad` |
837 |
|
else |
838 |
|
LIST=`scandirs results` |
839 |
|
fi |
840 |
|
else |
841 |
|
#- expand group of experiments: |
842 |
|
LIST=" " |
843 |
|
for xx in $TESTDIRS |
844 |
|
do |
845 |
|
case $xx in |
846 |
|
'basic') LIST=${LIST}" aim.5l_cs hs94.128x64x5 ideal_2D_oce" |
847 |
|
LIST=${LIST}" lab_sea tutorial_baroclinic_gyre" |
848 |
|
LIST=${LIST}" tutorial_global_oce_latlon tutorial_plume_on_slope" |
849 |
|
;; |
850 |
|
'tutorials') |
851 |
|
LIST=${LIST}" "`ls | grep 'tutorial_'` ;; |
852 |
|
*) LIST=${LIST}" "$xx ;; |
853 |
|
esac |
854 |
|
done |
855 |
fi |
fi |
856 |
|
#echo 'LIST='${LIST}'<' |
857 |
|
#- skip dirs, remove duplicate and non-directory: |
858 |
|
TESTDIRS=" " |
859 |
|
count=0 |
860 |
|
for xx in $LIST |
861 |
|
do |
862 |
|
yy=`echo $SKIPDIRS | grep -c $xx` |
863 |
|
if test $yy = 0 ; then |
864 |
|
if test -d $xx ; then |
865 |
|
yy=`echo $TESTDIRS | grep -c $xx` |
866 |
|
if test $yy = 0 ; then TESTDIRS=${TESTDIRS}" "$xx ; fi |
867 |
|
else count=1 ; |
868 |
|
echo ""; echo -n " -- skip \"$xx\" (not a directory !)" |
869 |
|
fi |
870 |
|
else |
871 |
|
if test $count = 1 ; then echo -n ", \"$xx\"" |
872 |
|
else count=1 ; echo "" ; echo -n " skip: \"$xx\"" |
873 |
|
fi |
874 |
|
fi |
875 |
|
done |
876 |
|
if test $count = 1 ; then echo "" ; echo -n " ... " ; fi |
877 |
|
#echo 'TESTDIRS='${TESTDIRS}'<' |
878 |
|
|
879 |
if test "x$OPTFILE" = xNONE -a "x$MITGCM_OF" != x ; then |
if test "x$OPTFILE" = xNONE -a "x$MITGCM_OF" != x ; then |
880 |
OPTFILE=$MITGCM_OF |
OPTFILE=$MITGCM_OF |
881 |
fi |
fi |
882 |
|
|
883 |
if test "x$ADM" = xt -a "x$COMMAND" = x ; then |
if test "x$ADM" = xt ; then |
884 |
COMMAND="./mitgcmuv_ad > output.txt_adm 2>&1" |
EXECUTABLE="mitgcmuv_ad" |
885 |
|
OUTPUTFILE="output_adm.txt" |
886 |
|
else |
887 |
|
EXECUTABLE="mitgcmuv" |
888 |
|
OUTPUTFILE="output.txt" |
889 |
fi |
fi |
890 |
|
|
891 |
if test "x$COMMAND" = x ; then |
if test "x$COMMAND" = x ; then |
892 |
COMMAND="$MAKE output.txt" |
COMMAND="./$EXECUTABLE > $OUTPUTFILE" |
893 |
|
fi |
894 |
|
if test "x$MPI" = xt ; then |
895 |
|
OUTPUTFILE="STDOUT.0000" |
896 |
fi |
fi |
897 |
|
|
898 |
echo "OK" |
#echo "OK" |
899 |
|
echo "OK (COMMAND= $COMMAND )" |
900 |
|
|
901 |
# create the FORTRAN comparison code |
# create the FORTRAN comparison code |
902 |
createcodelet |
createcodelet |
913 |
UNAMEA=`uname -a` |
UNAMEA=`uname -a` |
914 |
DATE=`date +%Y%m%d` |
DATE=`date +%Y%m%d` |
915 |
BASE="tr_"$MACH"_"$DATE"_" |
BASE="tr_"$MACH"_"$DATE"_" |
916 |
|
if test "x$OUTDIR" != x ; then |
917 |
|
BASE="tr_"$OUTDIR"_"$DATE"_" |
918 |
|
fi |
919 |
DNUM=0 |
DNUM=0 |
920 |
DRESULTS="$BASE$DNUM" |
DRESULTS="$BASE$DNUM" |
921 |
while test -e $DRESULTS ; do |
while test -e $DRESULTS ; do |
1000 |
# Cleanup only! |
# Cleanup only! |
1001 |
if test "x$CLEANUP" = xt ; then |
if test "x$CLEANUP" = xt ; then |
1002 |
if test -r $dir/build/Makefile ; then |
if test -r $dir/build/Makefile ; then |
1003 |
|
echo ' ------ clean dir:' $dir/build |
1004 |
( cd $dir/build ; make CLEAN ) |
( cd $dir/build ; make CLEAN ) |
1005 |
fi |
fi |
1006 |
if test -r $dir/input/Makefile ; then |
if test -d $dir/run/CVS ; then |
1007 |
( cd $dir/input ; make CLEAN ) |
echo ' ------ clean dir:' $dir/run |
1008 |
|
run_clean $dir/run |
1009 |
fi |
fi |
1010 |
|
( |
1011 |
|
cd $dir |
1012 |
|
rm -rf tr_run.* |
1013 |
|
) |
1014 |
continue |
continue |
1015 |
fi |
fi |
1016 |
|
|
1020 |
if test "x$ADM" = x ; then |
if test "x$ADM" = x ; then |
1021 |
fout=$dir"/results/output.txt" |
fout=$dir"/results/output.txt" |
1022 |
else |
else |
1023 |
fout=$dir"/results_ad/output.txt_adm" |
fout=$dir"/results_ad/output_adm.txt" |
1024 |
fi |
fi |
1025 |
if test ! -r $fout ; then |
if test ! -r $fout ; then |
1026 |
echo "can't read \"$fout\" -- skipping $dir" |
echo "can't read \"$fout\" -- skipping $dir" |
1032 |
|
|
1033 |
# Check for additional types of monitor output |
# Check for additional types of monitor output |
1034 |
|
|
1035 |
builddir="input" |
builddir="build" |
1036 |
rundir="input" |
if test ! -d $dir/$builddir ; then mkdir $dir/$builddir ; fi |
1037 |
use_seperate_build=0 |
rundir="run" |
1038 |
if test -d $dir/build -a -r $dir/build ; then |
#rundir=$builddir |
1039 |
builddir="build" |
if test ! -d $dir/$rundir ; then |
1040 |
rundir="build" |
rundir=$builddir |
|
use_seperate_build=1 |
|
|
linkdata $use_seperate_build $dir/$rundir |
|
1041 |
fi |
fi |
1042 |
|
|
|
# Check whether there are "extra runs" for this testdir |
|
|
extra_runs= |
|
|
if test "x$ADM" = x -a "x$use_seperate_build" = x1 ; then |
|
|
ex_run_dirs=`( cd $dir ; echo input.* )` |
|
|
echo "ex_run_dirs='$ex_run_dirs'" |
|
|
for exd in $ex_run_dirs ; do |
|
|
name=`echo $exd | sed -e 's/input.//g'` |
|
|
outf="$dir/results/output.txt.$name" |
|
|
if test -f $outf -a -r $outf ; then |
|
|
extra_runs="$extra_runs $name" |
|
|
fi |
|
|
done |
|
|
fi |
|
|
|
|
1043 |
if test "x$ADM" = x ; then |
if test "x$ADM" = x ; then |
1044 |
code_dir=code |
code_dir=code |
1045 |
CODE_DIR=$dir/code |
CODE_DIR=$dir/code |
1046 |
|
input_dirs='input' |
1047 |
else |
else |
1048 |
code_dir=code_ad |
code_dir=code_ad |
1049 |
CODE_DIR=$dir/code_ad |
CODE_DIR=$dir/code_ad |
1050 |
|
input_dirs='input_ad input' |
1051 |
fi |
fi |
1052 |
BUILD_DIR=$dir/$builddir |
BUILD_DIR=$dir/$builddir |
1053 |
|
|
1055 |
echo "can't find \"$CODE_DIR/SIZE.h_mpi\" -- skipping $dir" |
echo "can't find \"$CODE_DIR/SIZE.h_mpi\" -- skipping $dir" |
1056 |
continue |
continue |
1057 |
fi |
fi |
1058 |
|
if test ! -r $dir"/input/eedata.mth" -a "x$MULTI_THREAD" = "xt" ; then |
1059 |
|
echo "can't find \"$dir/input/eedata.mth\" -- skipping $dir" |
1060 |
|
continue |
1061 |
|
fi |
1062 |
|
|
1063 |
|
# Check whether there are "extra runs" for this testdir |
1064 |
|
extra_runs= |
1065 |
|
if test "x$ADM" = x ; then |
1066 |
|
ex_run_dirs=`( cd $dir ; echo input.* )` |
1067 |
|
#echo "ex_run_dirs='$ex_run_dirs'" |
1068 |
|
for exd in $ex_run_dirs ; do |
1069 |
|
name=`echo $exd | sed -e 's/input.//g'` |
1070 |
|
outf="$dir/results/output.$name.txt" |
1071 |
|
if test -f $outf -a -r $outf ; then |
1072 |
|
if test "x$MULTI_THREAD" = "xt" ; then |
1073 |
|
if test -r $dir"/"$exd"/eedata.mth" ; then |
1074 |
|
extra_runs="$extra_runs $name" |
1075 |
|
#else echo $dir"/"$exd"/eedata.mth: not found" |
1076 |
|
fi |
1077 |
|
else |
1078 |
|
extra_runs="$extra_runs $name" |
1079 |
|
fi |
1080 |
|
fi |
1081 |
|
done |
1082 |
|
fi |
1083 |
|
|
1084 |
echo "-------------------------------------------------------------------------------" |
echo "-------------------------------------------------------------------------------" |
1085 |
echo |
echo |
1086 |
echo "Experiment: $dir" |
if test "x$extra_runs" = "x" ; then |
1087 |
|
echo "Experiment: $dir" |
1088 |
|
else |
1089 |
|
echo "Experiment: $dir ; extra_runs=$extra_runs" |
1090 |
|
fi |
1091 |
echo |
echo |
1092 |
unset genmake makedepend make run |
unset genmake makedepend make run |
1093 |
results='-- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- --' |
results='-- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- --' |
1094 |
|
|
1095 |
# Create an output dir for each OPTFILE/tdir combination |
# Create an output dir for each OPTFILE/tdir combination |
1096 |
rel_CDIR=$DRESULTS"/"$dir |
rel_CDIR=$DRESULTS"/"$dir |
1098 |
CDIR=`pwd`"/$rel_CDIR" |
CDIR=`pwd`"/$rel_CDIR" |
1099 |
|
|
1100 |
if test "x$CLEANUP" = xt ; then |
if test "x$CLEANUP" = xt ; then |
1101 |
makeclean $dir/$builddir |
echo '====>>> this is to check that we never go through this part <<< ===' |
1102 |
|
makeclean $dir/$builddir \ |
1103 |
|
&& run_clean $dir/$rundir |
1104 |
else |
else |
1105 |
genmakemodel $dir/$builddir && genmake=Y \ |
genmakemodel $dir/$builddir && genmake=Y \ |
1106 |
&& makeclean $dir/$builddir \ |
&& makeclean $dir/$builddir \ |
1107 |
|
&& run_clean $dir/$rundir \ |
1108 |
&& symlink_mpifiles $dir $code_dir $builddir \ |
&& symlink_mpifiles $dir $code_dir $builddir \ |
1109 |
&& makedependmodel $dir/$builddir && makedepend=Y \ |
&& makedependmodel $dir/$builddir && makedepend=Y \ |
1110 |
&& makemodel $dir/$builddir && make=Y \ |
&& makemodel $dir/$builddir && make=Y \ |
1111 |
&& linkdata $use_seperate_build $dir/$rundir \ |
&& linkdata $dir/$rundir $input_dirs \ |
1112 |
&& runmodel $dir/$rundir && run=Y \ |
&& runmodel $dir/$rundir && run=Y \ |
1113 |
&& results=`testoutput $dir $rundir` |
&& results=`testoutput $dir $rundir "txt"` |
1114 |
fi |
fi |
1115 |
|
|
1116 |
echo |
echo |
1125 |
echo "tdir='$dir'" >> $CDIR"/summary.txt" |
echo "tdir='$dir'" >> $CDIR"/summary.txt" |
1126 |
|
|
1127 |
for ex in $extra_runs ; do |
for ex in $extra_runs ; do |
1128 |
test -e "$dir/tr_run.$ex" && rm -rf "$dir/tr_run.$ex" |
unset run |
1129 |
mkdir "$dir/tr_run.$ex" |
results='-- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- --' |
1130 |
links=`( cd "$dir/input" > /dev/null 2>&1 ; ls -1 | grep -v CVS )` |
# Create an output dir for each OPTFILE/tdir.ex combination |
1131 |
( |
rel_CDIR=$DRESULTS"/"$dir"."$ex |
1132 |
cd "$dir/tr_run.$ex" |
mkdir $rel_CDIR |
1133 |
for i in $links; do |
CDIR=`pwd`"/$rel_CDIR" |
1134 |
ln -s ../input/$i $i |
test ! -e "$dir/tr_run.$ex" && mkdir "$dir/tr_run.$ex" |
1135 |
done |
run_clean $dir/tr_run.$ex |
1136 |
) |
linkdata $dir/tr_run.$ex input.$ex input |
|
links=`( cd "$dir/input.$ex" > /dev/null 2>&1 ; ls -1 | grep -v CVS )` |
|
|
( |
|
|
cd "$dir/tr_run.$ex" |
|
|
for i in $links; do |
|
|
test -e $i && rm -f $i |
|
|
ln -s ../input.$ex/$i $i |
|
|
done |
|
|
ln -s ../$builddir/mitgcmuv mitgcmuv |
|
|
) |
|
1137 |
runmodel $dir/tr_run.$ex && run=Y \ |
runmodel $dir/tr_run.$ex && run=Y \ |
1138 |
&& results=`testoutput $dir tr_run.$ex "."$ex` |
&& results=`testoutput $dir tr_run.$ex ${ex}".txt"` |
1139 |
fres=`printf '%s %s %s %s' ${genmake:-N} ${makedepend:-N} ${make:-N} ${run:-N}` |
fres=`printf '%s %s %s %s' ${genmake:-N} ${makedepend:-N} ${make:-N} ${run:-N}` |
1140 |
fres=`formatresults $dir ${genmake:-N} ${makedepend:-N} ${make:-N} ${run:-N} $results` |
fres=`formatresults $dir ${genmake:-N} ${makedepend:-N} ${make:-N} ${run:-N} $results` |
1141 |
fres="$fres.$ex" |
fres="$fres.$ex" |
1145 |
echo "MACH='$MACH'" >> $CDIR"/summary.txt" |
echo "MACH='$MACH'" >> $CDIR"/summary.txt" |
1146 |
echo "UNAMEA='$UNAMEA'" >> $CDIR"/summary.txt" |
echo "UNAMEA='$UNAMEA'" >> $CDIR"/summary.txt" |
1147 |
echo "DATE='$DATE'" >> $CDIR"/summary.txt" |
echo "DATE='$DATE'" >> $CDIR"/summary.txt" |
1148 |
echo "tdir='$dir'" >> $CDIR"/summary.txt" |
echo "tdir='$dir.$ex'" >> $CDIR"/summary.txt" |
1149 |
|
if test "x$POSTCLEAN" = xt ; then |
1150 |
|
run_clean $dir/tr_run.$ex |
1151 |
|
fi |
1152 |
done |
done |
1153 |
else |
else |
1154 |
fres=`printf '%s %s %s %s' ${genmake:-N} ${makedepend:-N} ${make:-N} ${run:-N}` |
fres=`printf '%s %s %s %s' ${genmake:-N} ${makedepend:-N} ${make:-N} ${run:-N}` |
1160 |
echo "UNAMEA='$UNAMEA'" >> $CDIR"/summary.txt" |
echo "UNAMEA='$UNAMEA'" >> $CDIR"/summary.txt" |
1161 |
echo "DATE='$DATE'" >> $CDIR"/summary.txt" |
echo "DATE='$DATE'" >> $CDIR"/summary.txt" |
1162 |
echo "tdir='$dir'" >> $CDIR"/summary.txt" |
echo "tdir='$dir'" >> $CDIR"/summary.txt" |
1163 |
|
grep -A3 'Seconds in section "ALL' $dir/$rundir/$OUTPUTFILE \ |
1164 |
|
>> $CDIR"/summary.txt" |
1165 |
|
fi |
1166 |
|
|
1167 |
|
#postclean $dir/$builddir |
1168 |
|
if test "x$POSTCLEAN" = xt ; then |
1169 |
|
makeclean $dir/$builddir \ |
1170 |
|
&& run_clean $dir/$rundir |
1171 |
fi |
fi |
1172 |
|
|
1173 |
echo "-------------------------------------------------------------------------------" |
echo "-------------------------------------------------------------------------------" |
1210 |
rm -f tmp_cmpnum.c tmp_cmpnum |
rm -f tmp_cmpnum.c tmp_cmpnum |
1211 |
|
|
1212 |
if test "x$CLEANUP" != xt ; then |
if test "x$CLEANUP" != xt ; then |
1213 |
cat $SUMMARY |
cat $SUMMARY | sed 's/ -- -- -- --//g' |
1214 |
if test -e tr_out.txt ; then |
if test -e tr_out.txt ; then |
1215 |
mv tr_out.txt tr_out.txt.old |
mv tr_out.txt tr_out.txt.old |
1216 |
fi |
fi |
1217 |
cat $SUMMARY > tr_out.txt |
cat $SUMMARY | sed 's/ -- -- -- --//g' > tr_out.txt |
1218 |
fi |
fi |
1219 |
|
|
1220 |
if test "x$DELDIR" = xt ; then |
if test "x$DELDIR" = xt ; then |