1 |
#!/bin/bash |
#! /usr/bin/env bash |
2 |
# |
# |
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# $Header$ |
# $Header$ |
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# $Name$ |
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# |
# |
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usage() |
usage() |
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echo |
echo |
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echo "where possible OPTIONS are:" |
echo "where possible OPTIONS are:" |
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echo " (-help|-h) print usage" |
echo " (-help|-h) print usage" |
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echo " (-optfile=|-of=)STRING list of genmake2 \"optfiles\"" |
echo " (-mth) run multi threaded (using eedata.mth)" |
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echo " (-a|-addr)STRING list of email recipients" |
echo " (-mpi) compile and run using MPI" |
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echo " (-t|-tdir)STRING list of \"test\" dirs" |
echo " (-ieee|-noieee) if possible, use IEEE compiler flags" |
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echo " (DEF=\"-ieee\")" |
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echo " (-of=|-optfile=)STRING list of optfiles to use" |
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echo " (-a|-addr) STRING list of email recipients" |
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echo " (DEF=\"edhill@mitgcm.org\")" |
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echo " (-t|-tdir) STRING list of group and/or exp. dirs to test" |
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echo " (recognized groups: basic, tutorials)" |
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echo " (DEF=\"\" which test all)" |
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echo " (-skd|-skipdir) STRING list of exp. dirs to skip" |
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echo " (DEF=\"\" which test all)" |
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echo " (-b|-bash) STRING preferred location of a \"bash\" or" |
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echo " Bourne-compatible \"sh\" shell" |
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echo " (DEF=\"\" for \"bash\")" |
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echo " (-adm|-ad) perform an adjoint run" |
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echo " (-command) STRING command to run" |
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echo " (DEF=\"make output.txt\")" |
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echo " (-m|-make) STRING command to use for \"make\"" |
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echo " (DEF=\"make\")" |
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echo " (-odir) STRING used to build output directory name" |
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echo " (DEF=\"hostname\")" |
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echo " (-ptr|-ptracers) STRING specify which ptracers to test" |
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echo " (DEF=\"1 2 3 4 5\")" |
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echo " (-match) NUMBER Matching Criteria (number of digits)" |
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echo " (DEF=\"12\")" |
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echo " (-j) JOBS use \"make -j JOBS\" for parallel builds" |
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echo " (-clean) *ONLY* run \"make CLEAN\"" |
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echo " (-quick|-q) same as \"-nogenmake -noclean -nodepend\"" |
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echo " (-nogenmake|-ng) skip the genmake stage" |
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echo " (-noclean|-nc) skip the \"make clean\" stage" |
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echo " (-nodepend|-nd) skip the \"make depend\" stage" |
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echo " (-deldir|-dd) on success, delete the output directory" |
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echo " (-ts) provide timing information per timestep" |
48 |
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echo " (-papis) provide MFlop/s per timestep using PAPI" |
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echo " (-pcls) provide MFlop/s per timestep using PCL" |
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echo |
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echo "and where STRING can be a whitespace-delimited list" |
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echo "such as:" |
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echo |
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echo " -t 'exp0 exp2 exp3' " |
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echo " -addr='abc@123.com testing@home.org'" |
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echo |
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echo "provided that the expression is properly quoted within the current" |
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echo "shell (note the use of single quotes to protect white space)." |
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echo |
echo |
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exit 1 |
exit 1 |
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} |
} |
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# build the mpack utility |
# build the mpack utility |
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build_mpack() |
build_mpack() |
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{ |
{ |
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echo -n "building the mpack utility... " |
printf "building the mpack utility... " |
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if test ! -x "$MPACKDIR/mpack" ; then |
if test ! -x "$MPACKDIR/mpack" ; then |
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if test ! -d $MPACKDIR ; then |
if test ! -d $MPACKDIR ; then |
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echo |
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echo "Error: can't find \"$MPACKDIR\"" |
echo "Error: can't find \"$MPACKDIR\"" |
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echo " are you sure this program is being run in the correct " |
echo " are you sure this program is being run in the correct " |
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echo " (that is, \"MITGCM_ROOT\verification\") directory?" |
echo " (that is, \"MITGCM_ROOT\verification\") directory?" |
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exit 1 |
echo |
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HAVE_MPACK=f |
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fi |
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printf "building mpack... " |
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if test "x$CC" = x ; then |
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export CC=cc |
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fi |
fi |
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echo -n "building mpack... " |
( cd $MPACKDIR && ./configure && $MAKE ) > tr_build_mpack.out 2>&1 |
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( cd $MPACKDIR && ./configure && make ) > build_mpack.out 2>&1 |
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RETVAL=$? |
RETVAL=$? |
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if test "x$RETVAL" != x0 ; then |
if test "x$RETVAL" != x0 ; then |
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echo |
echo |
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echo "Error building the mpack tools at: $MPACK_DIR" |
echo "Error building the mpack tools at: $MPACK_DIR" |
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exit 1 |
echo |
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HAVE_MPACK=f |
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else |
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rm -f tr_build_mpack.out |
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HAVE_MPACK=t |
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fi |
fi |
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else |
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HAVE_MPACK=t |
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fi |
fi |
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echo "OK" |
echo "OK" |
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} |
} |
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compare_lines() |
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{ |
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# use codelet to compare lines |
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if [ $verbose -gt 1 ]; then |
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cat tmp3.txt 1>&2 |
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fi |
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return `./a.out < tmp3.txt` |
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} |
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testoutput_for_prop() |
testoutput_for_prop() |
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{ |
{ |
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# testoutput_for_prop dir s1 label subdir |
# testoutput_for_prop dir s1 label subdir extension |
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# |
# |
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# compares files in $dir/$subdir/output.txt and $dir/results/output.txt |
# compares files $dir/$subdir/$OUTPUTFILE and $dir/results/output.txt |
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# using search strings s1 and text label |
# using search strings s1 and text label |
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if [ $debug -gt 0 ]; then |
if [ $debug -gt 0 ]; then |
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echo testoutput_for_prop: grep "$2" $1/$4/output.txt 1>&2 |
echo testoutput_for_prop: grep "$2" $1/$4/$OUTPUTFILE 1>&2 |
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fi |
fi |
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if [ -r $1/$4/output.txt ]; then |
if [ -r $1/$4/$OUTPUTFILE ]; then |
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grep "$2" $1/$4/output.txt | sed 's/.*=//' | nl > tmp1.txt |
grep "$2" $1/$4/$OUTPUTFILE | sed 's/.*=//' | cat -n > tmp1.txt |
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lncnt=`wc -l tmp1.txt | awk '{print $1}' ` |
lncntA=`wc -l tmp1.txt | awk '{print $1}' ` |
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if [ $lncnt -lt 3 ]; then |
if [ $lncntA -lt 3 ]; then |
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if [ $verbose -gt 0 ]; then |
if [ $verbose -gt 0 ]; then |
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echo Not enough lines of output when searching for "$2" 1>&2 |
echo Not enough lines of output when searching for "$2" 1>&2 |
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fi |
fi |
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return 99 |
return 99 |
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fi |
fi |
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else |
else |
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echo testoutput_for_prop: output.txt from model run was not readable 1>&2 |
echo testoutput_for_prop: $OUTPUTFILE from model run was not readable 1>&2 |
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return 99 |
return 99 |
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fi |
fi |
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if [ $debug -gt 0 ]; then |
if [ $debug -gt 0 ]; then |
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echo testoutput_for_prop: grep "$2" $1/results/output.txt 1>&2 |
echo testoutput_for_prop: grep "$2" $1/results/output.$5 1>&2 |
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fi |
fi |
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grep "$2" $1/results/output.txt | sed 's/.*=//' | nl > tmp2.txt |
grep "$2" $1/results/output.$5 | sed 's/.*=//' | cat -n > tmp2.txt |
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lncnt=`wc -l tmp2.txt | awk '{print $1}' ` |
lncntB=`wc -l tmp2.txt | awk '{print $1}' ` |
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if [ $lncnt -lt 3 ]; then |
if [ $lncntB -lt 3 ]; then |
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if [ $verbose -gt 0 ]; then |
if [ $verbose -gt 0 ]; then |
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echo Not enough lines of output when searching for "$2" 1>&2 |
echo Not enough lines of output when searching for "$2" 1>&2 |
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fi |
fi |
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return 99 |
return 99 |
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fi |
fi |
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if [ $lncntA -ne $lncntB ]; then |
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if [ $verbose -gt 0 ]; then |
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echo Not same Nb of lines when searching for "$2" ":" $lncntA $lncntB 1>&2 |
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fi |
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return 99 |
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fi |
137 |
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has_nan=`cat tmp1.txt | grep -i nan | wc -l` |
138 |
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if [ $has_nan -gt 0 ] ; then |
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echo testoutput_for_prop: $OUTPUTFILE contains $has_nan NaN values 1>&2 |
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return 99 |
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fi |
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has_inf=`cat tmp1.txt | grep -i inf | wc -l` |
143 |
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if [ $has_inf -gt 0 ] ; then |
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echo testoutput_for_prop: $OUTPUTFILE contains $has_inf Inf values 1>&2 |
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return 99 |
146 |
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fi |
147 |
if [ $debug -gt 0 ]; then |
if [ $debug -gt 0 ]; then |
148 |
echo testoutput_for_prop: join tmp1.txt tmp2.txt 1>&2 |
echo testoutput_for_prop: join tmp1.txt tmp2.txt 1>&2 |
149 |
fi |
fi |
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if [ $debug -gt 0 ]; then |
if [ $debug -gt 0 ]; then |
152 |
echo testoutput_for_prop: compare_lines 1>&2 |
echo testoutput_for_prop: compare_lines 1>&2 |
153 |
fi |
fi |
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compare_lines |
if [ $verbose -gt 1 ]; then |
155 |
digits_of_similarity=$? |
cat tmp3.txt 1>&2 |
156 |
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fi |
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echo "-1" >> tmp3.txt |
158 |
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# On the SGI O3K (*not* the O2K), "cat -n" inserts a ":" after the line number |
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cat tmp3.txt | sed -e 's|:||g' > tmp4.txt |
160 |
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digits_of_similarity=`./tr_cmpnum < tmp4.txt` |
161 |
if [ $digits_of_similarity -eq 99 ]; then |
if [ $digits_of_similarity -eq 99 ]; then |
162 |
if [ $verbose -gt 0 ]; then |
if [ $verbose -gt 0 ]; then |
163 |
echo testoutput_for_prop: No comparison was available for \"$2\" 1>&2 |
echo testoutput_for_prop: No comparison was available for \"$2\" 1>&2 |
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echo There were $digits_of_similarity decimal places of similarity for \"$2\" 1>&2 |
echo There were $digits_of_similarity decimal places of similarity for \"$2\" 1>&2 |
169 |
fi |
fi |
170 |
fi |
fi |
171 |
rm tmp1.txt tmp2.txt tmp3.txt |
rm -f tmp1.txt tmp2.txt tmp3.txt tmp4.txt |
172 |
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173 |
return $digits_of_similarity |
return $digits_of_similarity |
174 |
} |
} |
188 |
done |
done |
189 |
} |
} |
190 |
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testoutput_ad() |
192 |
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{ |
193 |
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grep $3 $1/results_ad/output_adm.txt | awk '{print NR " " $5}' > t05.txt |
194 |
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grep $3 $1/$2/$OUTPUTFILE | awk '{print NR " " $5}' > t15.txt |
195 |
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grep $3 $1/results_ad/output_adm.txt | awk '{print NR " " $6}' > t06.txt |
196 |
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grep $3 $1/$2/$OUTPUTFILE | awk '{print NR " " $6}' > t16.txt |
197 |
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join t05.txt t15.txt > t5.txt |
198 |
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join t06.txt t16.txt > t6.txt |
199 |
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echo "-1" >> t5.txt |
200 |
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echo "-1" >> t6.txt |
201 |
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digits_5=`./tr_cmpnum < t5.txt` |
202 |
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digits_6=`./tr_cmpnum < t6.txt` |
203 |
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dashnum $digits_5 $digits_6 |
204 |
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rm -f t[01][56].txt t[56].txt |
205 |
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} |
206 |
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207 |
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check_for_add_mon_output() |
208 |
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{ |
209 |
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# Check for additional types of monitor output |
210 |
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if test "x$1" = x ; then |
211 |
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return |
212 |
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fi |
213 |
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214 |
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for ii in $PTRACERS_NUM ; do |
215 |
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eval "HAVE_PTR0"$ii"=f" |
216 |
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done |
217 |
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218 |
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ptr_add="trcstat_ptracerXX_min trcstat_ptracerXX_max" |
219 |
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ptr_add="$ptr_add trcstat_ptracerXX_mean trcstat_ptracerXX_sd" |
220 |
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for ii in $PTRACERS_NUM ; do |
221 |
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for jj in $ptr_add ; do |
222 |
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name=`eval "echo $jj | sed -e 's|XX|0"$ii"|g'"` |
223 |
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tst=`grep $name $1 | wc -l | awk '{print $1}'` |
224 |
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if test ! "x$tst" = x0 ; then |
225 |
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eval "HAVE_PTR0"$ii"=t" |
226 |
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fi |
227 |
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done |
228 |
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# eval 'echo "HAVE_PTR0'$ii' = $HAVE_PTR0'$ii'"' |
229 |
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done |
230 |
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} |
231 |
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232 |
testoutput() |
testoutput() |
233 |
{ |
{ |
234 |
# testoutput diretory subdir |
# testoutput directory subdir extension |
235 |
# |
# |
236 |
# test output in "directory" |
# test output in "directory" |
237 |
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if test "x$ADM" = x ; then |
238 |
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if [ $debug -gt 0 ]; then |
239 |
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echo testoutput: testoutput_for_prop $1 cg2d_init_res 1>&2 |
240 |
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fi |
241 |
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testoutput_for_prop $1 "cg2d_init_res" "cg2d init. residual" $2 $3; cg2dres=$? |
242 |
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if [ $debug -gt 0 ]; then |
243 |
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echo testoutput: cg2dres=$cg2dres 1>&2 |
244 |
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fi |
245 |
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testoutput_for_prop $1 "dynstat_theta_min" "theta minimum" $2 $3; tmin=$? |
246 |
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testoutput_for_prop $1 "dynstat_theta_max" "theta maximum" $2 $3; tmax=$? |
247 |
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testoutput_for_prop $1 "dynstat_theta_mean" "theta mean" $2 $3; tmean=$? |
248 |
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testoutput_for_prop $1 "dynstat_theta_sd" "theta s.d." $2 $3; tsd=$? |
249 |
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testoutput_for_prop $1 "dynstat_salt_min" "salt minimum" $2 $3; smin=$? |
250 |
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testoutput_for_prop $1 "dynstat_salt_max" "salt maximum" $2 $3; smax=$? |
251 |
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testoutput_for_prop $1 "dynstat_salt_mean" "salt mean" $2 $3; smean=$? |
252 |
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testoutput_for_prop $1 "dynstat_salt_sd" "salt s.d." $2 $3; ssd=$? |
253 |
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testoutput_for_prop $1 "dynstat_uvel_min" "U minimum" $2 $3; umin=$? |
254 |
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testoutput_for_prop $1 "dynstat_uvel_max" "U maximum" $2 $3; umax=$? |
255 |
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testoutput_for_prop $1 "dynstat_uvel_mean" "U mean" $2 $3; umean=$? |
256 |
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testoutput_for_prop $1 "dynstat_uvel_sd" "U s.d." $2 $3; usd=$? |
257 |
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testoutput_for_prop $1 "dynstat_vvel_min" "V minimum" $2 $3; vmin=$? |
258 |
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testoutput_for_prop $1 "dynstat_vvel_max" "V maximum" $2 $3; vmax=$? |
259 |
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testoutput_for_prop $1 "dynstat_vvel_mean" "V mean" $2 $3; vmean=$? |
260 |
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testoutput_for_prop $1 "dynstat_vvel_sd" "V s.d." $2 $3; vsd=$? |
261 |
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262 |
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# This is for PTRACERS |
263 |
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for ii in $PTRACERS_NUM ; do |
264 |
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eval `echo "p0"$ii"_min=99"` |
265 |
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eval `echo "p0"$ii"_max=99"` |
266 |
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eval `echo "p0"$ii"_mean=99"` |
267 |
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eval `echo "p0"$ii"_sd=99"` |
268 |
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tst=`eval 'echo "$HAVE_PTR0'$ii'"'` |
269 |
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#echo 'tst = '$tst |
270 |
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if test "x$tst" = xt ; then |
271 |
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a="trcstat_ptracer0" |
272 |
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testoutput_for_prop $1 "$a"$ii"_min" "p0"$ii"_min" $2 $3 |
273 |
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RETVAL=$? ; eval `echo "p0"$ii"_min="$RETVAL` |
274 |
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testoutput_for_prop $1 "$a"$ii"_max" "p0"$ii"_max" $2 $3 |
275 |
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RETVAL=$? ; eval `echo "p0"$ii"_max="$RETVAL` |
276 |
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testoutput_for_prop $1 "$a"$ii"_mean" "p0"$ii"_mean" $2 $3 |
277 |
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RETVAL=$? ; eval `echo "p0"$ii"_mean="$RETVAL` |
278 |
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testoutput_for_prop $1 "$a"$ii"_sd" "p0"$ii"_sd" $2 $3 |
279 |
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RETVAL=$? ; eval `echo "p0"$ii"_sd="$RETVAL` |
280 |
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fi |
281 |
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done |
282 |
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283 |
if [ $debug -gt 0 ]; then |
allargs="$cg2dres $tmin $tmax $tmean $tsd $smin $smax $smean $ssd" |
284 |
echo testoutput: testoutput_for_prop $1 cg2d_init_res 1>&2 |
allargs="$allargs $umin $umax $umean $usd $vmin $vmax $vmean $vsd" |
285 |
fi |
allargs="$allargs $p01_min $p01_max $p01_mean $p01_sd" |
286 |
testoutput_for_prop $1 "cg2d_init_res" "cg2d init. residual" $2; cg2dres=$? |
allargs="$allargs $p02_min $p02_max $p02_mean $p02_sd" |
287 |
if [ $debug -gt 0 ]; then |
allargs="$allargs $p03_min $p03_max $p03_mean $p03_sd" |
288 |
echo testoutput: cg2dres=$cg2dres 1>&2 |
allargs="$allargs $p04_min $p04_max $p04_mean $p04_sd" |
289 |
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allargs="$allargs $p05_min $p05_max $p05_mean $p05_sd" |
290 |
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291 |
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eval "dashnum $allargs" |
292 |
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293 |
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else |
294 |
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testoutput_ad $1 $2 "precision_grdchk_result" |
295 |
fi |
fi |
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testoutput_for_prop $1 "dynstat_theta_min" "theta minimum" $2; tmin=$? |
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testoutput_for_prop $1 "dynstat_theta_max" "theta maximum" $2; tmax=$? |
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testoutput_for_prop $1 "dynstat_theta_mean" "theta mean" $2; tmean=$? |
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testoutput_for_prop $1 "dynstat_theta_sd" "theta s.d." $2; tsd=$? |
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testoutput_for_prop $1 "dynstat_salt_min" "salt minimum" $2; smin=$? |
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testoutput_for_prop $1 "dynstat_salt_max" "salt maximum" $2; smax=$? |
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testoutput_for_prop $1 "dynstat_salt_mean" "salt mean" $2; smean=$? |
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testoutput_for_prop $1 "dynstat_salt_sd" "salt s.d." $2; ssd=$? |
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testoutput_for_prop $1 "dynstat_uvel_min" "U minimum" $2; umin=$? |
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testoutput_for_prop $1 "dynstat_uvel_max" "U maximum" $2; umax=$? |
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testoutput_for_prop $1 "dynstat_uvel_mean" "U mean" $2; umean=$? |
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testoutput_for_prop $1 "dynstat_uvel_sd" "U s.d." $2; usd=$? |
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testoutput_for_prop $1 "dynstat_vvel_min" "V minimum" $2; vmin=$? |
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testoutput_for_prop $1 "dynstat_vvel_max" "V maximum" $2; vmax=$? |
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testoutput_for_prop $1 "dynstat_vvel_mean" "V mean" $2; vmean=$? |
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testoutput_for_prop $1 "dynstat_vvel_sd" "V s.d." $2; vsd=$? |
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dashnum $cg2dres $tmin $tmax $tmean $tsd $smin $smax $smean $ssd \ |
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$umin $umax $umean $usd $vmin $vmax $vmean $vsd |
|
296 |
} |
} |
297 |
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298 |
genmakemodel() |
genmakemodel() |
299 |
{ |
{ |
300 |
# genmakemodel directory |
# genmakemodel directory |
301 |
GENMAKE2="../../../tools/genmake2" |
if test "x$NOGENMAKE" = xt ; then |
302 |
( |
echo "genmake skipped!" |
303 |
cd $1; |
else |
304 |
printf 'genmake ... ' 1>&2 |
if test "x$BASH" = x ; then |
305 |
# ../../../tools/genmake -ieee -mods=../code > make.log 2>&1 |
GENMAKE2="../../../tools/genmake2" |
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$GENMAKE2 -ds --mods=../code "--optfile="$OPTFILE > make.log 2>&1 |
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RETVAL=$? |
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for i in gm_state gm_optfile gm_local Makefile ; do |
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if test -r $i ; then |
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cp $i $CDIR |
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fi |
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done |
|
|
if test "x$RETVAL" != x0 ; then |
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tail make.log |
|
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echo "genmakemodel: genmake failed" 1>&2 |
|
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cp make.log $CDIR |
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return 1 |
|
306 |
else |
else |
307 |
echo "succesful" 1>&2 |
GENMAKE2="$BASH ../../../tools/genmake2 -bash $BASH" |
308 |
fi |
fi |
309 |
) |
( |
310 |
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cd $1; |
311 |
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command="$GENMAKE2 -ds -m $MAKE" |
312 |
|
if test "x$ADM" = x ; then |
313 |
|
command="$command --mods=../code" |
314 |
|
else |
315 |
|
command="$command --mods=../code_ad" |
316 |
|
fi |
317 |
|
if test "x$OPTFILE" != xNONE ; then |
318 |
|
command="$command --optfile=$OPTFILE" |
319 |
|
fi |
320 |
|
if test "x$IEEE" != x ; then |
321 |
|
command="$command -ieee" |
322 |
|
fi |
323 |
|
if test "x$MPI" = xt ; then |
324 |
|
command="$command -mpi" |
325 |
|
fi |
326 |
|
if test "x$TS" = xt ; then |
327 |
|
command="$command -ts" |
328 |
|
fi |
329 |
|
if test "x$PAPIS" = xt ; then |
330 |
|
command="$command -papis" |
331 |
|
else |
332 |
|
if test "x$PCLS" = xt ; then |
333 |
|
command="$command -pcls" |
334 |
|
fi |
335 |
|
fi |
336 |
|
printf 'genmake ... ' 1>&2 |
337 |
|
$command > make.log 2>&1 |
338 |
|
RETVAL=$? |
339 |
|
# Reduce the size of the testing emails! |
340 |
|
head -100 Makefile > $CDIR/Makefile_head |
341 |
|
if test "x$RETVAL" != x0 ; then |
342 |
|
tail make.log |
343 |
|
echo "genmakemodel: genmake failed" 1>&2 |
344 |
|
cp genmake_* make.log $CDIR |
345 |
|
return 1 |
346 |
|
else |
347 |
|
echo "successful" 1>&2 |
348 |
|
fi |
349 |
|
) |
350 |
|
fi |
351 |
} |
} |
352 |
|
|
353 |
makeclean() |
makeclean() |
354 |
{ |
{ |
355 |
# makeclean directory |
# makeclean directory |
356 |
( |
if test "x$NOCLEAN" = xt ; then |
357 |
cd $1; |
echo "make Clean skipped!" |
358 |
rm -f output.txt |
else |
359 |
printf 'make CLEAN ... ' 2>&1 |
( |
360 |
if test -r Makefile ; then |
cd $1; |
361 |
make CLEAN >> make.log 2>&1 |
#if test -e $OUTPUTFILE ; then rm -f $OUTPUTFILE ; fi |
362 |
RETVAL=$? |
if test -r Makefile ; then |
363 |
if test "x$RETVAL" != x0 ; then |
printf 'clean build-dir: make Clean ... ' 2>&1 |
364 |
tail make.log |
$MAKE Clean >> make.log 2>&1 |
365 |
echo "makeclean: \"make CLEAN\" failed" 1>&2 |
RETVAL=$? |
366 |
cp make.log $CDIR"/make.log" |
if test "x$RETVAL" != x0 ; then |
367 |
return 1 |
tail make.log |
368 |
|
echo "makeclean: \"make Clean\" failed" 1>&2 |
369 |
|
cp make.log $CDIR"/make.log" |
370 |
|
return 1 |
371 |
|
fi |
372 |
fi |
fi |
373 |
fi |
echo successful 1>&2 |
374 |
echo succesful 1>&2 |
exit 0 |
375 |
exit 0 |
) |
376 |
) |
fi |
377 |
|
} |
378 |
|
|
379 |
|
run_clean() |
380 |
|
{ |
381 |
|
# run_clean directory |
382 |
|
if test "x$NOCLEAN" = xt ; then |
383 |
|
echo "run_clean skipped!" |
384 |
|
else |
385 |
|
( |
386 |
|
cd $1; |
387 |
|
printf 'clean run-dir ... ' 2>&1 |
388 |
|
# part of what is done after "make clean" when doing "make CLEAN" |
389 |
|
find . -name "*.meta" -exec rm {} \; |
390 |
|
find . -name "*.data" -exec rm {} \; |
391 |
|
find . -name "fort.*" -exec rm {} \; |
392 |
|
find . -type l -exec rm {} \; |
393 |
|
rm -f $EXECUTABLE *.txt STD* *diagnostics.log datetime |
394 |
|
rm -rf mnc_test_* |
395 |
|
echo successful 1>&2 |
396 |
|
exit 0 |
397 |
|
) |
398 |
|
fi |
399 |
} |
} |
400 |
|
|
401 |
makedependmodel() |
makedependmodel() |
402 |
{ |
{ |
403 |
# makedependmodel directory |
# makedependmodel directory |
404 |
( |
if test "x$NODEPEND" = xt ; then |
405 |
cd $1; |
echo "make depend skipped!" |
406 |
printf 'make depend ... ' 1>&2 |
else |
407 |
make depend >> make.log 2>&1 |
( |
408 |
RETVAL=$? |
cd $1; |
409 |
if test "x$RETVAL" != x0 ; then |
printf 'make depend ... ' 1>&2 |
410 |
tail make.log |
$MAKE depend >> make.log 2>&1 |
411 |
echo "makedependmodel: make depend failed" 1>&2 |
RETVAL=$? |
412 |
cp make.log $CDIR"/make.log" |
if test "x$RETVAL" != x0 ; then |
413 |
return 1 |
tail make.log |
414 |
else |
echo "makedependmodel: make depend failed" 1>&2 |
415 |
echo succesful 1>&2 |
cp make.log $CDIR"/make.log" |
416 |
fi |
return 1 |
417 |
) |
else |
418 |
|
echo successful 1>&2 |
419 |
|
fi |
420 |
|
) |
421 |
|
fi |
422 |
} |
} |
423 |
|
|
424 |
makemodel() |
makemodel() |
428 |
cd $1; |
cd $1; |
429 |
if test -r Makefile ; then |
if test -r Makefile ; then |
430 |
printf 'make ... ' 1>&2 |
printf 'make ... ' 1>&2 |
431 |
make >> make.log 2>&1 |
if test "x$ADM" = x ; then |
432 |
|
if test "x$JOBS" = x ; then |
433 |
|
$MAKE >> make.log 2>&1 |
434 |
|
else |
435 |
|
$MAKE -j $JOBS >> make.log 2>&1 |
436 |
|
fi |
437 |
|
else |
438 |
|
$MAKE adall >> make.log 2>&1 |
439 |
|
fi |
440 |
RETVAL=$? |
RETVAL=$? |
441 |
if test "x$RETVAL" != x0 ; then |
if test "x$RETVAL" != x0 ; then |
442 |
tail make.log |
tail make.log |
444 |
cp make.log $CDIR"/make.log" |
cp make.log $CDIR"/make.log" |
445 |
return 1 |
return 1 |
446 |
else |
else |
447 |
echo succesful 1>&2 |
echo successful 1>&2 |
448 |
fi |
fi |
449 |
fi |
fi |
450 |
) |
) |
451 |
} |
} |
452 |
|
|
453 |
|
symlink_mpifiles() |
454 |
|
{ |
455 |
|
# Put special links so that MPI specific files are used |
456 |
|
# This MUST be invoked between makeclean and makelinks because |
457 |
|
# the Makefile will link to non-mpi files by default |
458 |
|
|
459 |
|
dir=$1 |
460 |
|
code_dir=$2 |
461 |
|
BUILD_DIR=$dir/$3 |
462 |
|
CODE_DIR=$dir/$code_dir |
463 |
|
|
464 |
|
# These are files that should replace their counter-part when using -mpi |
465 |
|
MPI_FILES=`(cd $CODE_DIR; find . -name "*_mpi")` |
466 |
|
|
467 |
|
# Is this an MPI run? |
468 |
|
if test "x$MPI" = xt ; then |
469 |
|
# YES: We symbolically link these files to the build |
470 |
|
# dir so long as there is no real file in place |
471 |
|
for ii in $MPI_FILES ; do |
472 |
|
i=`echo $ii | sed 's:^\./::'` |
473 |
|
name=`echo $i | sed 's:_mpi::' ` |
474 |
|
cmp $CODE_DIR/$i $BUILD_DIR/$name > /dev/null 2>&1 |
475 |
|
RETVAL=$? |
476 |
|
if test "x$RETVAL" != x0 ; then |
477 |
|
if ! test -f $BUILD_DIR/$i ; then |
478 |
|
#echo Linking $name to $i |
479 |
|
(cd $BUILD_DIR; ln -sf ../$code_dir/$i $name) |
480 |
|
fi |
481 |
|
fi |
482 |
|
done |
483 |
|
else |
484 |
|
# NO: We undo any _mpi symbolically linked files |
485 |
|
for ii in $MPI_FILES ; do |
486 |
|
i=`echo $ii | sed 's:^\./::'` |
487 |
|
name=`echo $i | sed 's:_mpi::' ` |
488 |
|
if test -L $BUILD_DIR/$name ; then |
489 |
|
cmp $BUILD_DIR/$name "../$code_dir/$name"_mpi > /dev/null 2>&1 |
490 |
|
RETVAL=$? |
491 |
|
if test "x$RETVAL" = x0 ; then |
492 |
|
#echo Un-linking $name from $linktarg |
493 |
|
rm -f $BUILD_DIR/$name |
494 |
|
fi |
495 |
|
fi |
496 |
|
done |
497 |
|
fi |
498 |
|
|
499 |
|
} |
500 |
|
|
501 |
linkdata() |
linkdata() |
502 |
{ |
{ |
503 |
# linkdata flag |
# linkdata run_dir input_dir_1 input_dir_2 ... |
504 |
# |
# |
505 |
# symbolically link data files to run directory |
# symbolically link data files to run directory |
506 |
if [ $1 -ne 0 ]; then |
if test -d $1 ; then |
507 |
( cd $2 ; ln -sf ../input/* . ) |
( |
508 |
|
cd $1 ; shift |
509 |
|
if test -r "../"$1"/eedata.mth" ; then |
510 |
|
# found eedata.mth in 1rst input dir and it is readable |
511 |
|
if test "x$MULTI_THREAD" = "xt" ; then |
512 |
|
# multi-threaded test: remove symbolic link & link eedata.mth |
513 |
|
if test -h eedata ; then rm -f eedata ; fi |
514 |
|
if test ! -r eedata ; then |
515 |
|
ln -sf "../"$1"/eedata.mth" eedata ; |
516 |
|
printf 'eedata.mth ' 1>&2 |
517 |
|
fi |
518 |
|
else |
519 |
|
# not multi-threaded test: remove eedata symbolic link |
520 |
|
if test -h eedata ; then rm -f eedata ; fi |
521 |
|
fi |
522 |
|
fi |
523 |
|
for ldir in $* ; do |
524 |
|
if test -d "../"$ldir ; then |
525 |
|
printf 'ldir='${ldir} 1>&2 |
526 |
|
files=`( cd "../"$ldir ; ls -1 | grep -v CVS )` |
527 |
|
for i in $files ; do |
528 |
|
if test ! -d "../"$ldir/$i ; then |
529 |
|
if test ! -r $i ; then |
530 |
|
printf ' '$i 1>&2 |
531 |
|
ln -sf "../"$ldir"/"$i $i |
532 |
|
fi |
533 |
|
fi |
534 |
|
done |
535 |
|
if test -x "../"$ldir"/"prepare_run ; then |
536 |
|
"../"$ldir"/"prepare_run |
537 |
|
fi |
538 |
|
printf ' ; ' 1>&2 |
539 |
|
fi |
540 |
|
done |
541 |
|
) |
542 |
fi |
fi |
543 |
} |
} |
544 |
|
|
545 |
runmodel() |
runmodel() |
546 |
{ |
{ |
547 |
# runmodel directory exe |
# runmodel directory |
548 |
# |
# |
549 |
# runs the model "exe" in "directory" (exe is relative to directory) |
# runs "$COMMAND in "directory" |
550 |
|
# (where "$COMMAND" is relative to "directory") |
551 |
( |
( |
552 |
cd $1 |
cd $1 |
553 |
if [ -x $2 ]; then |
printf 'runmodel in %s ...' $1 1>&2 |
554 |
if [ $quick -eq 0 ]; then |
# make output.txt |
555 |
rm -f output.txt |
echo |
556 |
fi |
if test ! -x $EXECUTABLE -a -x "../"$builddir"/"$EXECUTABLE ; then |
557 |
printf 'runmodel: ' 1>&2 |
echo " link" $EXECUTABLE "from dir ../"$builddir > run.log_00 |
558 |
make output.txt |
ln -sf "../"$builddir"/"$EXECUTABLE . |
559 |
RETVAL=$? |
fi |
560 |
if test "x$RETVAL" = x0 ; then |
if test ! -x $EXECUTABLE ; then |
561 |
cp output.txt $CDIR"/output.txt" |
rm -f run.log ; touch run.log |
562 |
return 0 |
if test -f run.log_00 ; then cat run.log_00 >> run.log ; fi |
563 |
|
echo " no executable:" $EXECUTABLE >> run.log |
564 |
|
RETVAL=8 |
565 |
|
ENDVAL=-1 |
566 |
|
else |
567 |
|
if test $OUTPUTFILE -ot $EXECUTABLE ; then |
568 |
|
rm -f run.log ; touch run.log |
569 |
|
if test -f run.log_00 ; then cat run.log_00 >> run.log ; fi |
570 |
|
( eval $COMMAND ) >> run.log 2>&1 |
571 |
|
RETVAL=$? |
572 |
else |
else |
573 |
return 1 |
RETVAL=0 |
574 |
|
if test -f run.log ; then |
575 |
|
if test -f run.log_00 ; then cat run.log_00 >> run.log ; fi |
576 |
|
echo "---------->> $OUTPUTFILE is up to date " >> run.log 2>&1 |
577 |
|
else |
578 |
|
touch run.log |
579 |
|
if test -f run.log_00 ; then cat run.log_00 >> run.log ; fi |
580 |
|
echo "---------->> $OUTPUTFILE is up to date " >> run.log 2>&1 |
581 |
|
echo " no previous run.log: assume NORMAL END" >> run.log 2>&1 |
582 |
|
fi |
583 |
fi |
fi |
584 |
|
ENDVAL=`cat run.log | grep -v 'ABNORMAL END' | grep -c 'NORMAL END'` |
585 |
|
fi |
586 |
|
rm -f run.log_00 |
587 |
|
#if test "x$RETVAL" = x0 ; then |
588 |
|
if [ $RETVAL -eq 0 -a $ENDVAL -gt 0 ] ; then |
589 |
|
tail run.log |
590 |
|
echo successful 1>&2 |
591 |
|
# === Reduce the size of the testing emails! |
592 |
|
#cp $OUTPUTFILE $CDIR"/"$OUTPUTFILE |
593 |
|
if test -s STDERR.0000 ; then cp STDERR.0000 $CDIR"/STDERR.0000" ; fi |
594 |
|
return 0 |
595 |
|
else |
596 |
|
tail run.log |
597 |
|
echo failed '(run:' $RETVAL ' end:' $ENDVAL ')' 1>&2 |
598 |
|
cp run.log $CDIR"/run.log" |
599 |
|
if test -s STDERR.0000 ; then cp STDERR.0000 $CDIR"/STDERR.0000" ; fi |
600 |
|
return 1 |
601 |
fi |
fi |
602 |
) |
) |
603 |
} |
} |
606 |
{ |
{ |
607 |
# create codelet for comparing model output |
# create codelet for comparing model output |
608 |
|
|
609 |
echo -n "creating the comparison code... " |
printf "creating the comparison code... " |
610 |
cat > tmp_cmpnum.f <<EOFA |
cat > tr_cmpnum.c <<EOF |
611 |
program cmpnum |
#include <stdio.h> |
612 |
implicit none |
#include <math.h> |
613 |
real*8 a,b,diff |
int main( int argc, char** argv ) { |
614 |
integer linnum,best |
int linnum,cmplin,best,lncnt; |
615 |
best=-16 |
double a,b,abave,relerr; |
616 |
99 read(*,*,end=70,err=60) linnum,a,b |
best = -22; |
617 |
diff=0.5*(abs(a)+abs(b)) |
lncnt = 0; |
618 |
c print *,a,b,diff,abs(a-b)/diff |
while( 1 & (lncnt+=1) < 999 ) { |
619 |
if (diff.gt.1.e-12) then |
scanf("%d", &linnum); |
620 |
diff=abs(a-b)/diff |
if (linnum == -1) break; |
621 |
if (diff.gt.0.) then |
scanf("%lf", &a); scanf("%lf", &b); |
622 |
c print *,int(log10(diff)),diff |
abave = 0.5*(fabs(a)+fabs(b)); |
623 |
linnum=int(log10(diff)) |
if ( abave == abave ) { |
624 |
best=max(best,linnum) |
if (abave > 0.0) { |
625 |
endif |
relerr=fabs(a-b)/abave; |
626 |
else |
if (relerr > 0.0) { cmplin = (int)rint(log10(relerr)); } |
627 |
if (best.eq.-16.and.diff.ne.0.) best=-22 |
else { cmplin = -16 ; } |
628 |
endif |
best = (best > cmplin) ? best : cmplin; } |
629 |
goto 99 |
else { cmplin = -22 ; } |
630 |
60 stop 'cmpnum: An error occured reading a,b' |
/* printf("%d ; %lf ; %lf\n",cmplin,a,b); */ |
631 |
70 print *,-best |
} |
632 |
end |
else { |
633 |
EOFA |
/* printf("%lf ; %lf ; %lf\n",abave,a,b); */ |
634 |
|
break; } |
635 |
|
} |
636 |
|
if (lncnt == 999) best=-29; |
637 |
|
if (linnum != -1) best=-99; |
638 |
|
printf("%d\n", -best); |
639 |
|
return 0; |
640 |
|
} |
641 |
|
EOF |
642 |
|
$CC -o tr_cmpnum tr_cmpnum.c -lm |
643 |
|
|
644 |
f77 tmp_cmpnum.f |
if [ -x ./tr_cmpnum ]; then |
|
if [ -x ./a.out ]; then |
|
645 |
echo "OK" |
echo "OK" |
646 |
return 0 |
return 0 |
647 |
else |
else |
648 |
echo |
echo |
649 |
echo "createcodelet: failed to compile codelet" | tee |
echo "ERROR: failed to compile comparison code -- please specify" |
650 |
|
echo " a C compiler using the CC environment variable." |
651 |
exit 1 |
exit 1 |
652 |
fi |
fi |
653 |
} |
} |
664 |
if [ $1 = '--' ]; then |
if [ $1 = '--' ]; then |
665 |
printf ' N/O ' |
printf ' N/O ' |
666 |
else |
else |
667 |
if [ $1 -gt 12 ]; then |
if [ $1 -ge $MATCH_CRIT ]; then |
668 |
printf ' pass' |
printf ' pass' |
669 |
else |
else |
670 |
printf ' FAIL' |
printf ' FAIL' |
675 |
|
|
676 |
} |
} |
677 |
|
|
|
show_help() |
|
|
{ |
|
|
cat - << EOF |
|
|
$0 [-help] [-quick] [-verbose] dir1 [dir2] [...] |
|
|
-help Show this help message |
|
|
-quick Skip "genmake" and "make depend" if the Makefile exists |
|
|
-quiet Reduce the amount of output |
|
|
-verbose Produce copious amounts of output |
|
|
-debug Produce even more output which will mean nothing to most |
|
|
-force Do "make CLEAN" before compiling. This forces a complete rebuild. |
|
|
-clean Do "make CLEAN" after compiling and testing. |
|
|
-noieee By default, $0 uses the -ieee option for genmake. This turns it off. |
|
|
-cleanup Aggresively removes all model output, executables and object files |
|
|
and then exits. Use with care. |
|
|
|
|
|
Normal usage: |
|
|
$0 * Configure, compile, run and analyze in all experiment directories |
|
|
EOF |
|
|
} |
|
|
|
|
678 |
scandirs() |
scandirs() |
679 |
{ |
{ |
680 |
if [ $# -eq 0 ]; then |
if [ $# -eq 1 ]; then |
681 |
for arg in * ; do |
for arg in * ; do |
682 |
test -d $arg/input && echo $arg |
test -d $arg/$1 && echo $arg |
683 |
done |
done |
684 |
else |
else |
685 |
echo $* |
echo $* |
686 |
fi |
fi |
687 |
} |
} |
688 |
|
|
689 |
|
|
690 |
############################################################################### |
############################################################################### |
|
############################################################################### |
|
|
############################################################################### |
|
691 |
|
|
692 |
|
|
693 |
# Default properties |
# Default properties |
694 |
debug=0 |
debug=0 |
695 |
verbose=1 |
verbose=1 |
|
quick=0 |
|
696 |
clean=0 |
clean=0 |
|
ieee=1 |
|
697 |
expts='' |
expts='' |
698 |
|
# ieee=1 |
699 |
|
|
700 |
OPTFILES= |
IEEE=true |
701 |
ADDRESSES=edhill@mitgcm.org |
if test "x$MITGCM_IEEE" != x ; then |
702 |
|
IEEE=$MITGCM_IEEE |
703 |
|
fi |
704 |
|
|
705 |
|
|
706 |
|
CLEANUP=f |
707 |
|
QUICK=f |
708 |
|
NOGENMAKE=f |
709 |
|
NOCLEAN=f |
710 |
|
NODEPEND=f |
711 |
|
POSTCLEAN=f |
712 |
|
|
713 |
|
BASH= |
714 |
|
OPTFILE=NONE |
715 |
|
ADDRESSES= |
716 |
TESTDIRS= |
TESTDIRS= |
717 |
|
SKIPDIRS= |
718 |
MPACKDIR="../tools/mpack-1.6" |
MPACKDIR="../tools/mpack-1.6" |
719 |
|
HAVE_MPACK= |
720 |
MPACK="$MPACKDIR/mpack" |
MPACK="$MPACKDIR/mpack" |
721 |
|
COMMAND= |
722 |
|
if test "x$MAKE" = x ; then |
723 |
|
MAKE=make |
724 |
|
fi |
725 |
|
if test "x$CC" = x ; then |
726 |
|
CC=cc |
727 |
|
fi |
728 |
|
JOBS= |
729 |
|
MPI=f |
730 |
|
MULTI_THREAD=f |
731 |
|
OUTDIR= |
732 |
|
DELDIR= |
733 |
|
|
734 |
|
ADM= |
735 |
|
|
736 |
|
# Additional monitor types |
737 |
|
PTRACERS_NUM="1 2 3 4 5" |
738 |
|
|
739 |
|
MATCH_CRIT=13 |
740 |
|
|
741 |
echo -n "parsing options... " |
printf "parsing options... " |
742 |
|
|
743 |
ac_prev= |
ac_prev= |
744 |
for ac_option ; do |
for ac_option ; do |
757 |
-help | --help | -h | --h) |
-help | --help | -h | --h) |
758 |
usage ;; |
usage ;; |
759 |
|
|
760 |
-optfile | --optfile | -f | --f) |
-optfile | --optfile | -of | --of) |
761 |
ac_prev=OPTFILES ;; |
ac_prev=OPTFILE ;; |
762 |
-optfile=* | --optfile=*) |
-optfile=* | --optfile=* | -of=* | --of=*) |
763 |
OPTFILES=$ac_optarg ;; |
OPTFILE=$ac_optarg ;; |
764 |
|
|
765 |
-addr | --addr | -a | --a) |
-addr | --addr | -a | --a) |
766 |
ac_prev=ADDRESSES ;; |
ac_prev=ADDRESSES ;; |
772 |
-tdir=* | --tdir=*) |
-tdir=* | --tdir=*) |
773 |
TESTDIRS=$ac_optarg ;; |
TESTDIRS=$ac_optarg ;; |
774 |
|
|
775 |
-quick) quick=1 ;; |
-skipdir | --skipdir | -skd | --skd) |
776 |
|
ac_prev=SKIPDIRS ;; |
777 |
|
-skipdir=* | --skipdir=*) |
778 |
|
SKIPDIRS=$ac_optarg ;; |
779 |
|
|
780 |
|
-bash | --bash | -b | --b) |
781 |
|
ac_prev=BASH ;; |
782 |
|
-bash=* | --bash=*) |
783 |
|
BASH=$ac_optarg ;; |
784 |
|
|
785 |
|
-command | --command | -c | --c) |
786 |
|
ac_prev=COMMAND ;; |
787 |
|
-command=* | --command=*) |
788 |
|
COMMAND=$ac_optarg ;; |
789 |
|
|
790 |
|
-make | --make | -m | --m) |
791 |
|
ac_prev=MAKE ;; |
792 |
|
-make=* | --make=*) |
793 |
|
MAKE=$ac_optarg ;; |
794 |
|
|
795 |
|
-odir | --odir) |
796 |
|
ac_prev=OUTDIR ;; |
797 |
|
-odir=* | --odir=*) |
798 |
|
OUTDIR=$ac_optarg ;; |
799 |
|
|
800 |
|
-ptracers | --ptracers | -ptr | --ptr) |
801 |
|
ac_prev=PTRACERS_NUM ;; |
802 |
|
-ptracers=* | --ptracers=* | -ptr=* | --ptr=*) |
803 |
|
PTRACERS_NUM=$ac_optarg ;; |
804 |
|
|
805 |
|
-match | --match ) ac_prev=MATCH_CRIT ;; |
806 |
|
-match=* | --match=* ) MATCH_CRIT=$ac_optarg ;; |
807 |
|
|
808 |
|
-j) ac_prev=JOBS ;; |
809 |
|
-j=*) JOBS=$ac_optarg ;; |
810 |
|
|
811 |
|
-clean | --clean) |
812 |
|
CLEANUP=t ; DELDIR=t ;; |
813 |
|
|
814 |
|
-quick | --quick | -q | --q) |
815 |
|
QUICK=t ;; |
816 |
|
-nogenmake | --nogenmake | -ng | --ng) |
817 |
|
NOGENMAKE=t ;; |
818 |
|
-noclean | --noclean | -nc | --nc) |
819 |
|
NOCLEAN=t ;; |
820 |
|
-nodepend | --nodepend | -nd | --nd) |
821 |
|
NODEPEND=t ;; |
822 |
|
|
823 |
|
-postclean | --postclean | -pc | --pc) |
824 |
|
POSTCLEAN=t ;; |
825 |
|
|
826 |
|
-mpi) MPI=t ;; |
827 |
|
|
828 |
|
-mth) MULTI_THREAD=t ;; |
829 |
|
|
830 |
|
-adm | -ad) ADM=t ;; |
831 |
|
|
832 |
|
-ieee) IEEE=true ;; |
833 |
|
-noieee) IEEE= ;; |
834 |
|
|
835 |
-verbose) verbose=2 ;; |
-verbose) verbose=2 ;; |
836 |
-debug) debug=1 ;; |
-debug) debug=1 ;; |
|
-clean) clean=1 ;; |
|
|
-noieee) ieee=0 ;; |
|
837 |
-quiet) verbose=0 ;; |
-quiet) verbose=0 ;; |
838 |
|
|
839 |
|
-deldir | -dd) DELDIR=t ;; |
840 |
|
|
841 |
|
-ts) TS=t;; |
842 |
|
|
843 |
|
-papis) PAPIS=t;; |
844 |
|
|
845 |
|
-pcls) PCL=t;; |
846 |
|
|
847 |
-*) |
-*) |
848 |
echo "Error: unrecognized option: "$ac_option |
echo "Error: unrecognized option: "$ac_option |
849 |
usage |
usage |
858 |
|
|
859 |
done |
done |
860 |
|
|
861 |
|
if test "x$QUICK" = xt ; then |
862 |
|
NOGENMAKE=t |
863 |
|
NOCLEAN=t |
864 |
|
NODEPEND=t |
865 |
|
fi |
866 |
|
|
867 |
if test "x$TESTDIRS" = x ; then |
if test "x$TESTDIRS" = x ; then |
868 |
TESTDIRS=`scandirs` |
if test "x$ADM" = xt ; then |
869 |
|
LIST=`scandirs results_ad` |
870 |
|
else |
871 |
|
LIST=`scandirs results` |
872 |
|
fi |
873 |
|
else |
874 |
|
#- expand group of experiments: |
875 |
|
LIST=" " |
876 |
|
for xx in $TESTDIRS |
877 |
|
do |
878 |
|
case $xx in |
879 |
|
'basic') LIST=${LIST}" aim.5l_cs hs94.128x64x5 ideal_2D_oce" |
880 |
|
LIST=${LIST}" lab_sea tutorial_baroclinic_gyre" |
881 |
|
LIST=${LIST}" tutorial_global_oce_latlon tutorial_plume_on_slope" |
882 |
|
;; |
883 |
|
'tutorials') |
884 |
|
LIST=${LIST}" "`ls | grep 'tutorial_'` ;; |
885 |
|
*) LIST=${LIST}" "$xx ;; |
886 |
|
esac |
887 |
|
done |
888 |
|
fi |
889 |
|
#echo 'LIST='${LIST}'<' |
890 |
|
#- skip dirs, remove duplicate and non-directory: |
891 |
|
TESTDIRS=" " |
892 |
|
count=0 |
893 |
|
for xx in $LIST |
894 |
|
do |
895 |
|
yy=`echo $SKIPDIRS | grep -c $xx` |
896 |
|
if test $yy = 0 ; then |
897 |
|
if test -d $xx ; then |
898 |
|
yy=`echo $TESTDIRS | grep -c $xx` |
899 |
|
if test $yy = 0 ; then TESTDIRS=${TESTDIRS}" "$xx ; fi |
900 |
|
else count=1 ; |
901 |
|
echo ""; echo -n " -- skip \"$xx\" (not a directory !)" |
902 |
|
fi |
903 |
|
else |
904 |
|
if test $count = 1 ; then echo -n ", \"$xx\"" |
905 |
|
else count=1 ; echo "" ; echo -n " skip: \"$xx\"" |
906 |
|
fi |
907 |
|
fi |
908 |
|
done |
909 |
|
if test $count = 1 ; then echo "" ; echo -n " ... " ; fi |
910 |
|
#echo 'TESTDIRS='${TESTDIRS}'<' |
911 |
|
|
912 |
|
if test "x$OPTFILE" = xNONE -a "x$MITGCM_OF" != x ; then |
913 |
|
OPTFILE=$MITGCM_OF |
914 |
|
fi |
915 |
|
|
916 |
|
if test "x$ADM" = xt ; then |
917 |
|
EXECUTABLE="mitgcmuv_ad" |
918 |
|
OUTPUTFILE="output_adm.txt" |
919 |
|
else |
920 |
|
EXECUTABLE="mitgcmuv" |
921 |
|
OUTPUTFILE="output.txt" |
922 |
|
fi |
923 |
|
|
924 |
|
if test "x$COMMAND" = x ; then |
925 |
|
COMMAND="./$EXECUTABLE > $OUTPUTFILE" |
926 |
|
fi |
927 |
|
if test "x$MPI" = xt ; then |
928 |
|
OUTPUTFILE="STDOUT.0000" |
929 |
fi |
fi |
930 |
|
|
931 |
echo "OK" |
#echo "OK" |
932 |
|
echo "OK (COMMAND= $COMMAND )" |
933 |
|
|
934 |
# create the FORTRAN comparison code |
# create the FORTRAN comparison code |
935 |
createcodelet |
createcodelet |
936 |
|
|
937 |
# build the mpack utility |
# build the mpack utility |
938 |
build_mpack |
if test "x$ADDRESSES" = xNONE -o "x$ADDRESSES" = x ; then |
939 |
|
echo "skipping mpack build" |
940 |
|
else |
941 |
|
build_mpack |
942 |
|
fi |
943 |
|
|
944 |
# Create a uniquely named directory to store results |
# Create a uniquely named directory to store results |
945 |
MACH=`hostname` |
MACH=`hostname` |
946 |
|
UNAMEA=`uname -a` |
947 |
DATE=`date +%Y%m%d` |
DATE=`date +%Y%m%d` |
948 |
BASE=$MACH"_"$DATE"_" |
BASE="tr_"$MACH"_"$DATE"_" |
949 |
|
if test "x$OUTDIR" != x ; then |
950 |
|
BASE="tr_"$OUTDIR"_"$DATE"_" |
951 |
|
fi |
952 |
DNUM=0 |
DNUM=0 |
953 |
DRESULTS="$BASE$DNUM" |
DRESULTS="$BASE$DNUM" |
954 |
while test -e $DRESULTS ; do |
while test -e $DRESULTS ; do |
958 |
mkdir $DRESULTS |
mkdir $DRESULTS |
959 |
RETVAL=$? |
RETVAL=$? |
960 |
if test "x$RETVAL" != x0 ; then |
if test "x$RETVAL" != x0 ; then |
961 |
echo "Error: can't create results directory \"./$DRESULTS\"" |
echo "ERROR: Can't create results directory \"./$DRESULTS\"" |
962 |
exit 1 |
exit 1 |
963 |
fi |
fi |
964 |
SUMMARY="$DRESULTS/summary.txt" |
SUMMARY="$DRESULTS/summary.txt" |
965 |
date > $SUMMARY |
printf "Start time: " >> $SUMMARY |
966 |
cat << EOF >> $SUMMARY |
start_date=`date` |
967 |
T S U V |
echo $start_date > $SUMMARY |
968 |
G D M c m s m s m s m s |
|
969 |
E p a R g m m e . m m e . m m e . m m e . |
of_path= |
970 |
N n k u 2 i a a d i a a d i a a d i a a d |
if test "x$OPTFILE" != xNONE ; then |
971 |
2 d e n d n x n . n x n . n x n . n x n . |
if test -r $OPTFILE ; then |
972 |
|
# get the path |
973 |
|
path=${OPTFILE%/*} |
974 |
|
if test "x$path" = x ; then |
975 |
|
of_path=`pwd` |
976 |
|
else |
977 |
|
of_path=`( cd $path > /dev/null 2>&1 ; pwd )` |
978 |
|
fi |
979 |
|
file=${OPTFILE##*/} |
980 |
|
OPTFILE=$of_path/$file |
981 |
|
cp $OPTFILE $DRESULTS |
982 |
|
echo >> $SUMMARY |
983 |
|
echo " OPTFILE=$OPTFILE" >> $SUMMARY |
984 |
|
else |
985 |
|
echo | tee $SUMMARY |
986 |
|
echo "ERROR: can't read OPTFILE=\"$OPTFILE\"" | tee $SUMMARY |
987 |
|
exit 1 |
988 |
|
fi |
989 |
|
else |
990 |
|
echo >> $SUMMARY |
991 |
|
echo "No \"OPTFILE\" was explicitly specified by testreport," >> $SUMMARY |
992 |
|
echo " so the genmake default will be used." >> $SUMMARY |
993 |
|
fi |
994 |
|
echo |
995 |
|
echo >> $SUMMARY |
996 |
|
if test "x$ADM" = x ; then |
997 |
|
if [ $MATCH_CRIT -lt 10 ] ; |
998 |
|
then line_0=" "$MATCH_CRIT ; |
999 |
|
else line_0=" "$MATCH_CRIT ; fi |
1000 |
|
line_0=" $line_0 ----T----- ----S----- ----U----- ----V-----" |
1001 |
|
# line_0=" ----T----- ----S----- ----U----- ----V-----" |
1002 |
|
line_1="G D M c m s m s m s m s" |
1003 |
|
line_2="E p a R g m m e . m m e . m m e . m m e ." |
1004 |
|
line_3="N n k u 2 i a a d i a a d i a a d i a a d" |
1005 |
|
line_4="2 d e n d n x n . n x n . n x n . n x n ." |
1006 |
|
for ii in $PTRACERS_NUM ; do |
1007 |
|
# tst=`eval 'echo $HAVE_PTR0'$ii` |
1008 |
|
# if test "x$tst" = xt ; then |
1009 |
|
line_0="$line_0 --PTR 0"$ii"--" |
1010 |
|
line_1="$line_1 m s" |
1011 |
|
line_2="$line_2 m m e ." |
1012 |
|
line_3="$line_3 i a a d" |
1013 |
|
line_4="$line_4 n x n ." |
1014 |
|
# fi |
1015 |
|
done |
1016 |
|
echo "$line_0" | tee -a $SUMMARY |
1017 |
|
echo "$line_1" | tee -a $SUMMARY |
1018 |
|
echo "$line_2" | tee -a $SUMMARY |
1019 |
|
echo "$line_3" | tee -a $SUMMARY |
1020 |
|
echo "$line_4" | tee -a $SUMMARY |
1021 |
|
echo " " | tee -a $SUMMARY |
1022 |
|
else |
1023 |
|
echo "ADJOINT=true" >> $SUMMARY |
1024 |
|
echo >> $SUMMARY |
1025 |
|
cat << EOF | tee -a $SUMMARY |
1026 |
|
G D M C G |
1027 |
|
E p a R o r |
1028 |
|
N n k u s a |
1029 |
|
2 d e n t d |
1030 |
|
|
1031 |
EOF |
EOF |
1032 |
|
fi |
1033 |
|
|
1034 |
|
# ...and each test directory... |
1035 |
|
for dir in $TESTDIRS ; do |
1036 |
|
|
1037 |
|
# Cleanup only! |
1038 |
|
if test "x$CLEANUP" = xt ; then |
1039 |
|
if test -r $dir/build/Makefile ; then |
1040 |
|
echo ' ------ clean dir:' $dir/build |
1041 |
|
( cd $dir/build ; make CLEAN ) |
1042 |
|
fi |
1043 |
|
if test -d $dir/run/CVS ; then |
1044 |
|
echo ' ------ clean dir:' $dir/run |
1045 |
|
run_clean $dir/run |
1046 |
|
fi |
1047 |
|
( |
1048 |
|
cd $dir |
1049 |
|
rm -rf tr_run.* |
1050 |
|
) |
1051 |
|
continue |
1052 |
|
fi |
1053 |
|
|
1054 |
NDIR=0 |
# Verify that the testdir exists and contains previous |
1055 |
|
# results in the correct location--or skip this directory! |
1056 |
|
fout= |
1057 |
|
if test "x$ADM" = x ; then |
1058 |
|
fout=$dir"/results/output.txt" |
1059 |
|
else |
1060 |
|
fout=$dir"/results_ad/output_adm.txt" |
1061 |
|
fi |
1062 |
|
if test ! -r $fout ; then |
1063 |
|
echo "can't read \"$fout\" -- skipping $dir" |
1064 |
|
continue |
1065 |
|
fi |
1066 |
|
if test "x$ADM" = x ; then |
1067 |
|
check_for_add_mon_output $fout |
1068 |
|
fi |
1069 |
|
|
1070 |
# For each optfile... |
# Check for additional types of monitor output |
|
for OPTFILE in $OPTFILES ; do |
|
1071 |
|
|
1072 |
OPTFILE=`pwd`"/$OPTFILE" |
builddir="build" |
1073 |
if test ! -r $OPTFILE ; then |
if test ! -d $dir/$builddir ; then mkdir $dir/$builddir ; fi |
1074 |
echo "Error: can't read optfile \"$OPTFILE\"" |
rundir="run" |
1075 |
exit 1 |
#rundir=$builddir |
1076 |
|
if test ! -d $dir/$rundir ; then |
1077 |
|
rundir=$builddir |
1078 |
fi |
fi |
|
echo |
|
|
echo "OPTFILE=$OPTFILE" >> $SUMMARY |
|
|
echo >> $SUMMARY |
|
1079 |
|
|
1080 |
# ...and each test directory... |
if test "x$ADM" = x ; then |
1081 |
for dir in $TESTDIRS ; do |
code_dir=code |
1082 |
|
CODE_DIR=$dir/code |
1083 |
# Create an output dir for each OPTFILE/tdir combination |
input_dirs='input' |
1084 |
CDIR=$DRESULTS"/"$NDIR |
else |
1085 |
mkdir $CDIR |
code_dir=code_ad |
1086 |
CDIR=`pwd`"/$CDIR" |
CODE_DIR=$dir/code_ad |
1087 |
|
input_dirs='input_ad input' |
1088 |
|
fi |
1089 |
|
BUILD_DIR=$dir/$builddir |
1090 |
|
|
1091 |
# ...configue, make, run, and compare the output. |
if test ! -r $CODE_DIR"/SIZE.h_mpi" -a "x$MPI" = "xt" ; then |
1092 |
echo "-------------------------------------------------------------------------------" |
echo "can't find \"$CODE_DIR/SIZE.h_mpi\" -- skipping $dir" |
1093 |
echo |
continue |
1094 |
echo "Experiment: $dir" |
fi |
1095 |
echo |
if test ! -r $dir"/input/eedata.mth" -a "x$MULTI_THREAD" = "xt" ; then |
1096 |
unset genmake makedepend make run |
echo "can't find \"$dir/input/eedata.mth\" -- skipping $dir" |
1097 |
results='-- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- --' |
continue |
1098 |
( cd $dir/input; rm -f *.{o,f,c,F} *.[f,F]90 work* output.txt Make* make.log; ) |
fi |
1099 |
if [ -r $dir/build ]; then |
|
1100 |
seperatebuilddir=1 |
# Check whether there are "extra runs" for this testdir |
1101 |
builddir=build |
extra_runs= |
1102 |
rundir=build |
if test "x$ADM" = x ; then |
1103 |
( cd $dir/build; ln -sf ../input/* . ) |
ex_run_dirs=`( cd $dir ; echo input.* )` |
1104 |
else |
#echo "ex_run_dirs='$ex_run_dirs'" |
1105 |
seperatebuilddir=0 |
for exd in $ex_run_dirs ; do |
1106 |
builddir=input |
name=`echo $exd | sed -e 's/input.//g'` |
1107 |
rundir=input |
outf="$dir/results/output.$name.txt" |
1108 |
fi |
if test -f $outf -a -r $outf ; then |
1109 |
|
if test "x$MULTI_THREAD" = "xt" ; then |
1110 |
|
if test -r $dir"/"$exd"/eedata.mth" ; then |
1111 |
|
extra_runs="$extra_runs $name" |
1112 |
|
#else echo $dir"/"$exd"/eedata.mth: not found" |
1113 |
|
fi |
1114 |
|
else |
1115 |
|
extra_runs="$extra_runs $name" |
1116 |
|
fi |
1117 |
|
fi |
1118 |
|
done |
1119 |
|
fi |
1120 |
|
|
1121 |
|
echo "-------------------------------------------------------------------------------" |
1122 |
|
echo |
1123 |
|
if test "x$extra_runs" = "x" ; then |
1124 |
|
echo "Experiment: $dir" |
1125 |
|
else |
1126 |
|
echo "Experiment: $dir ; extra_runs=$extra_runs" |
1127 |
|
fi |
1128 |
|
echo |
1129 |
|
unset genmake makedepend make run |
1130 |
|
results='-- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- --' |
1131 |
|
|
1132 |
|
# Create an output dir for each OPTFILE/tdir combination |
1133 |
|
rel_CDIR=$DRESULTS"/"$dir |
1134 |
|
mkdir $rel_CDIR |
1135 |
|
CDIR=`pwd`"/$rel_CDIR" |
1136 |
|
|
1137 |
|
if test "x$CLEANUP" = xt ; then |
1138 |
|
echo '====>>> this is to check that we never go through this part <<< ===' |
1139 |
|
makeclean $dir/$builddir \ |
1140 |
|
&& run_clean $dir/$rundir |
1141 |
|
else |
1142 |
genmakemodel $dir/$builddir && genmake=Y \ |
genmakemodel $dir/$builddir && genmake=Y \ |
1143 |
&& makeclean $dir/$builddir \ |
&& makeclean $dir/$builddir \ |
1144 |
|
&& run_clean $dir/$rundir \ |
1145 |
|
&& symlink_mpifiles $dir $code_dir $builddir \ |
1146 |
&& makedependmodel $dir/$builddir && makedepend=Y \ |
&& makedependmodel $dir/$builddir && makedepend=Y \ |
1147 |
&& makemodel $dir/$builddir && make=Y \ |
&& makemodel $dir/$builddir && make=Y \ |
1148 |
&& linkdata $seperatebuilddir $dir/$rundir \ |
&& linkdata $dir/$rundir $input_dirs \ |
1149 |
&& runmodel $dir/$builddir mitgcmuv && run=Y \ |
&& runmodel $dir/$rundir && run=Y \ |
1150 |
&& results=`testoutput $dir $rundir` |
&& results=`testoutput $dir $rundir "txt"` |
1151 |
|
fi |
1152 |
|
|
1153 |
|
echo |
1154 |
|
if test "x$ADM" = x ; then |
1155 |
|
fres=`formatresults $dir ${genmake:-N} ${makedepend:-N} ${make:-N} ${run:-N} $results` |
1156 |
echo |
echo |
1157 |
formatresults $dir ${genmake:-N} ${makedepend:-N} ${make:-N} ${run:-N} $results |
echo "$fres" >> $SUMMARY |
1158 |
|
echo "fresults='$fres'" > $CDIR"/summary.txt" |
1159 |
|
echo "MACH='$MACH'" >> $CDIR"/summary.txt" |
1160 |
|
echo "UNAMEA='$UNAMEA'" >> $CDIR"/summary.txt" |
1161 |
|
echo "DATE='$DATE'" >> $CDIR"/summary.txt" |
1162 |
|
echo "tdir='$dir'" >> $CDIR"/summary.txt" |
1163 |
|
|
1164 |
|
for ex in $extra_runs ; do |
1165 |
|
unset run |
1166 |
|
results='-- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- --' |
1167 |
|
# Create an output dir for each OPTFILE/tdir.ex combination |
1168 |
|
rel_CDIR=$DRESULTS"/"$dir"."$ex |
1169 |
|
mkdir $rel_CDIR |
1170 |
|
CDIR=`pwd`"/$rel_CDIR" |
1171 |
|
test ! -e "$dir/tr_run.$ex" && mkdir "$dir/tr_run.$ex" |
1172 |
|
run_clean $dir/tr_run.$ex |
1173 |
|
linkdata $dir/tr_run.$ex input.$ex input |
1174 |
|
runmodel $dir/tr_run.$ex && run=Y \ |
1175 |
|
&& results=`testoutput $dir tr_run.$ex ${ex}".txt"` |
1176 |
|
fres=`printf '%s %s %s %s' ${genmake:-N} ${makedepend:-N} ${make:-N} ${run:-N}` |
1177 |
|
fres=`formatresults $dir ${genmake:-N} ${makedepend:-N} ${make:-N} ${run:-N} $results` |
1178 |
|
fres="$fres.$ex" |
1179 |
|
echo |
1180 |
|
echo "$fres" >> $SUMMARY |
1181 |
|
echo "fresults='$fres'" > $CDIR"/summary.txt" |
1182 |
|
echo "MACH='$MACH'" >> $CDIR"/summary.txt" |
1183 |
|
echo "UNAMEA='$UNAMEA'" >> $CDIR"/summary.txt" |
1184 |
|
echo "DATE='$DATE'" >> $CDIR"/summary.txt" |
1185 |
|
echo "tdir='$dir.$ex'" >> $CDIR"/summary.txt" |
1186 |
|
if test "x$POSTCLEAN" = xt ; then |
1187 |
|
run_clean $dir/tr_run.$ex |
1188 |
|
fi |
1189 |
|
done |
1190 |
|
else |
1191 |
|
fres=`printf '%s %s %s %s' ${genmake:-N} ${makedepend:-N} ${make:-N} ${run:-N}` |
1192 |
|
fres=$fres"$results $dir" |
1193 |
echo |
echo |
1194 |
formatresults $dir ${genmake:-N} ${makedepend:-N} ${make:-N} ${run:-N} $results >> $SUMMARY |
echo "$fres" >> $SUMMARY |
1195 |
|
echo "fresults='$fres'" > $CDIR"/summary.txt" |
1196 |
|
echo "MACH='$MACH'" >> $CDIR"/summary.txt" |
1197 |
|
echo "UNAMEA='$UNAMEA'" >> $CDIR"/summary.txt" |
1198 |
|
echo "DATE='$DATE'" >> $CDIR"/summary.txt" |
1199 |
|
echo "tdir='$dir'" >> $CDIR"/summary.txt" |
1200 |
|
grep -A3 'Seconds in section "ALL' $dir/$rundir/$OUTPUTFILE \ |
1201 |
|
>> $CDIR"/summary.txt" |
1202 |
|
fi |
1203 |
|
|
1204 |
( cd $DRESULTS"/"$NDIR ; gzip * ) |
#postclean $dir/$builddir |
1205 |
|
if test "x$POSTCLEAN" = xt ; then |
1206 |
|
makeclean $dir/$builddir \ |
1207 |
|
&& run_clean $dir/$rundir |
1208 |
|
fi |
1209 |
|
|
1210 |
|
echo "-------------------------------------------------------------------------------" |
1211 |
|
|
1212 |
|
done |
1213 |
|
|
1214 |
tar -cf $DRESULTS"/"$NDIR".tar" $DRESULTS"/"$NDIR |
printf "Start time: " >> $SUMMARY |
1215 |
$MPACK -s MITgcm-test -m 1000000 $DRESULTS"/"$NDIR".tar" $ADDRESSES |
echo $start_date >> $SUMMARY |
1216 |
|
printf "End time: " >> $SUMMARY |
1217 |
|
date >> $SUMMARY |
1218 |
|
|
1219 |
NDIR=$(( $NDIR + 1 )) |
# If addresses were supplied and mpack built successfully, then try |
1220 |
|
# to send email using mpack. |
1221 |
done |
if test "x$ADDRESSES" = xNONE -o "x$ADDRESSES" = x ; then |
1222 |
done |
echo "No results email was sent." |
1223 |
|
else |
1224 |
|
if test "x$HAVE_MPACK" = xt ; then |
1225 |
|
tar -cf $DRESULTS".tar" $DRESULTS > /dev/null 2>&1 \ |
1226 |
|
&& gzip $DRESULTS".tar" \ |
1227 |
|
&& $MPACK -s MITgcm-test -m 3555000 $DRESULTS".tar.gz" $ADDRESSES |
1228 |
|
RETVAL=$? |
1229 |
|
if test "x$RETVAL" != x0 ; then |
1230 |
|
echo |
1231 |
|
echo "Warning: The tar, gzip, & mpack step failed. Please send email" |
1232 |
|
echo " to <MITgcm-support@mitgcm.org> for help. You may copy the " |
1233 |
|
echo " summary of results from the directory \"$DRESULTS\"." |
1234 |
|
echo |
1235 |
|
else |
1236 |
|
echo |
1237 |
|
echo "An email containing results was sent to the following addresses:" |
1238 |
|
echo " \"$ADDRESSES\"" |
1239 |
|
echo |
1240 |
|
fi |
1241 |
|
test -f $DRESULTS".tar" && rm -f $DRESULTS".tar" |
1242 |
|
test -f $DRESULTS".tar.gz" && rm -f $DRESULTS".tar.gz" |
1243 |
|
fi |
1244 |
|
fi |
1245 |
|
|
1246 |
# rm tmp_cmpnum.f a.out |
rm -f tr_cmpnum.c tr_cmpnum |
1247 |
|
|
1248 |
echo ------------------------------------------------------------------------------- |
if test "x$CLEANUP" != xt ; then |
1249 |
echo |
cat $SUMMARY | sed 's/ -- -- -- --//g' |
1250 |
echo >> $SUMMARY |
if test -e tr_out.txt ; then |
1251 |
date >> $SUMMARY |
mv tr_out.txt tr_out.txt.old |
1252 |
cat $SUMMARY |
fi |
1253 |
|
cat $SUMMARY | sed 's/ -- -- -- --//g' > tr_out.txt |
1254 |
|
fi |
1255 |
|
|
1256 |
# tar -cf $DRESULTS".tar" $DRESULTS |
if test "x$DELDIR" = xt ; then |
1257 |
# |
rm -rf $DRESULTS |
1258 |
# $MPACK -s MITgcm-test -m 1000000 $DRESULTS".tar" $ADDRESSES |
fi |
1259 |
|
|