1 |
#!/bin/bash |
#! /usr/bin/env bash |
2 |
# |
# |
3 |
# $Header$ |
# $Header$ |
4 |
# $Name$ |
# $Name$ |
11 |
echo |
echo |
12 |
echo "where possible OPTIONS are:" |
echo "where possible OPTIONS are:" |
13 |
echo " (-help|-h) print usage" |
echo " (-help|-h) print usage" |
14 |
echo " (-mpi) use MPI input files" |
echo " (-mth) run multi threaded (using eedata.mth)" |
15 |
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echo " (-mpi) compile and run using MPI" |
16 |
echo " (-ieee|-noieee) if possible, use IEEE compiler flags" |
echo " (-ieee|-noieee) if possible, use IEEE compiler flags" |
17 |
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echo " (DEF=\"-ieee\")" |
18 |
echo " (-optfile=|-of=)STRING list of optfiles to use" |
echo " (-optfile=|-of=)STRING list of optfiles to use" |
19 |
echo " (-a|-addr)STRING list of email recipients" |
echo " (-a|-addr) STRING list of email recipients" |
20 |
echo " (DEF=\"edhill@mitgcm.org\")" |
echo " (DEF=\"edhill@mitgcm.org\")" |
21 |
echo " (-t|-tdir)STRING list of test dirs to use" |
echo " (-t|-tdir) STRING list of group and/or exp. dirs to test" |
22 |
echo " (DEF=\"\" which builds all)" |
echo " (recognized groups: basic, tutorials)" |
23 |
echo " (-b|-bash)STRING location of \"bash\" executable" |
echo " (DEF=\"\" which test all)" |
24 |
echo " (DEF=\"\" for \"/bin/bash\")" |
echo " (-b|-bash) STRING preferred location of a \"bash\" or" |
25 |
echo " (-command)STRING command to run" |
echo " Bourne-compatible \"sh\" shell" |
26 |
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echo " (DEF=\"\" for \"bash\")" |
27 |
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echo " (-adm|-ad) perform an adjoint run" |
28 |
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echo " (-command) STRING command to run" |
29 |
echo " (DEF=\"make output.txt\")" |
echo " (DEF=\"make output.txt\")" |
30 |
echo " (-m|-make)STRING command to use for \"make\"" |
echo " (-m|-make) STRING command to use for \"make\"" |
31 |
echo " (DEF=\"make\")" |
echo " (DEF=\"make\")" |
32 |
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echo " (-odir) STRING used to build output directory name" |
33 |
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echo " (DEF=\"hostname\")" |
34 |
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echo " (-ptracers|-ptr) STRING specify which ptracers to test" |
35 |
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echo " (DEF=\"1 2 3 4 5\")" |
36 |
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echo " (-j) JOBS use \"make -j JOBS\" for parallel builds" |
37 |
echo " (-clean) *ONLY* run \"make CLEAN\"" |
echo " (-clean) *ONLY* run \"make CLEAN\"" |
38 |
echo " (-quick|-q) same as \"-nogenmake -noclean -nodepend\"" |
echo " (-quick|-q) same as \"-nogenmake -noclean -nodepend\"" |
39 |
echo " (-nogenmake|-ng) skip the genmake stage" |
echo " (-nogenmake|-ng) skip the genmake stage" |
40 |
echo " (-noclean|-nc) skip the \"make clean\" stage" |
echo " (-noclean|-nc) skip the \"make clean\" stage" |
41 |
echo " (-nodepend|-nd) skip the \"make depend\" stage" |
echo " (-nodepend|-nd) skip the \"make depend\" stage" |
42 |
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echo " (-deldir|-dd) on success, delete the output directory" |
43 |
echo |
echo |
44 |
echo "and where STRING follows a whitespace-delimited format" |
echo "and where STRING can be a whitespace-delimited list" |
45 |
echo "such as:" |
echo "such as:" |
46 |
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echo |
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echo " -t 'exp0 exp2 exp3' " |
echo " -t 'exp0 exp2 exp3' " |
48 |
echo " -addr='abc@123.com testing@home.org'" |
echo " -addr='abc@123.com testing@home.org'" |
49 |
echo |
echo |
50 |
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echo "provided that the expression is properly quoted within the current" |
51 |
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echo "shell (note the use of single quotes to protect white space)." |
52 |
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echo |
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exit 1 |
exit 1 |
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} |
} |
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56 |
# build the mpack utility |
# build the mpack utility |
57 |
build_mpack() |
build_mpack() |
58 |
{ |
{ |
59 |
echo -n "building the mpack utility... " |
printf "building the mpack utility... " |
60 |
if test ! -x "$MPACKDIR/mpack" ; then |
if test ! -x "$MPACKDIR/mpack" ; then |
61 |
if test ! -d $MPACKDIR ; then |
if test ! -d $MPACKDIR ; then |
62 |
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echo |
63 |
echo "Error: can't find \"$MPACKDIR\"" |
echo "Error: can't find \"$MPACKDIR\"" |
64 |
echo " are you sure this program is being run in the correct " |
echo " are you sure this program is being run in the correct " |
65 |
echo " (that is, \"MITGCM_ROOT\verification\") directory?" |
echo " (that is, \"MITGCM_ROOT\verification\") directory?" |
66 |
exit 1 |
echo |
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HAVE_MPACK=f |
68 |
fi |
fi |
69 |
echo -n "building mpack... " |
printf "building mpack... " |
70 |
( cd $MPACKDIR && ./configure && $MAKE ) > build_mpack.out 2>&1 |
if test "x$CC" = x ; then |
71 |
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export CC=cc |
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fi |
73 |
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( cd $MPACKDIR && ./configure && $MAKE ) > tr_build_mpack.out 2>&1 |
74 |
RETVAL=$? |
RETVAL=$? |
75 |
if test "x$RETVAL" != x0 ; then |
if test "x$RETVAL" != x0 ; then |
76 |
echo |
echo |
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echo "Error building the mpack tools at: $MPACK_DIR" |
echo "Error building the mpack tools at: $MPACK_DIR" |
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exit 1 |
echo |
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HAVE_MPACK=f |
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else |
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rm -f tr_build_mpack.out |
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HAVE_MPACK=t |
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fi |
fi |
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else |
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HAVE_MPACK=t |
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fi |
fi |
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echo "OK" |
echo "OK" |
88 |
} |
} |
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compare_lines() |
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{ |
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# use codelet to compare lines |
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if [ $verbose -gt 1 ]; then |
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cat tmp3.txt 1>&2 |
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fi |
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return `./a.out < tmp3.txt` |
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} |
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testoutput_for_prop() |
testoutput_for_prop() |
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{ |
{ |
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# testoutput_for_prop dir s1 label subdir |
# testoutput_for_prop dir s1 label subdir extension |
93 |
# |
# |
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# compares files in $dir/$subdir/output.txt and $dir/results/output.txt |
# compares files $dir/$subdir/$OUTPUTFILE and $dir/results/output.txt |
95 |
# using search strings s1 and text label |
# using search strings s1 and text label |
96 |
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|
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if [ $debug -gt 0 ]; then |
if [ $debug -gt 0 ]; then |
98 |
echo testoutput_for_prop: grep "$2" $1/$4/output.txt 1>&2 |
echo testoutput_for_prop: grep "$2" $1/$4/$OUTPUTFILE 1>&2 |
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fi |
fi |
100 |
if [ -r $1/$4/output.txt ]; then |
if [ -r $1/$4/$OUTPUTFILE ]; then |
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grep "$2" $1/$4/output.txt | sed 's/.*=//' | nl > tmp1.txt |
grep "$2" $1/$4/$OUTPUTFILE | sed 's/.*=//' | cat -n > tmp1.txt |
102 |
lncnt=`wc -l tmp1.txt | awk '{print $1}' ` |
lncntA=`wc -l tmp1.txt | awk '{print $1}' ` |
103 |
if [ $lncnt -lt 3 ]; then |
if [ $lncntA -lt 3 ]; then |
104 |
if [ $verbose -gt 0 ]; then |
if [ $verbose -gt 0 ]; then |
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echo Not enough lines of output when searching for "$2" 1>&2 |
echo Not enough lines of output when searching for "$2" 1>&2 |
106 |
fi |
fi |
107 |
return 99 |
return 99 |
108 |
fi |
fi |
109 |
else |
else |
110 |
echo testoutput_for_prop: output.txt from model run was not readable 1>&2 |
echo testoutput_for_prop: $OUTPUTFILE from model run was not readable 1>&2 |
111 |
return 99 |
return 99 |
112 |
fi |
fi |
113 |
if [ $debug -gt 0 ]; then |
if [ $debug -gt 0 ]; then |
114 |
echo testoutput_for_prop: grep "$2" $1/results/output.txt 1>&2 |
echo testoutput_for_prop: grep "$2" $1/results/output.$5 1>&2 |
115 |
fi |
fi |
116 |
grep "$2" $1/results/output.txt | sed 's/.*=//' | nl > tmp2.txt |
grep "$2" $1/results/output.$5 | sed 's/.*=//' | cat -n > tmp2.txt |
117 |
lncnt=`wc -l tmp2.txt | awk '{print $1}' ` |
lncntB=`wc -l tmp2.txt | awk '{print $1}' ` |
118 |
if [ $lncnt -lt 3 ]; then |
if [ $lncntB -lt 3 ]; then |
119 |
if [ $verbose -gt 0 ]; then |
if [ $verbose -gt 0 ]; then |
120 |
echo Not enough lines of output when searching for "$2" 1>&2 |
echo Not enough lines of output when searching for "$2" 1>&2 |
121 |
fi |
fi |
122 |
return 99 |
return 99 |
123 |
fi |
fi |
124 |
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if [ $lncntA -ne $lncntB ]; then |
125 |
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if [ $verbose -gt 0 ]; then |
126 |
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echo Not same Nb of lines when searching for "$2" ":" $lncntA $lncntB 1>&2 |
127 |
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fi |
128 |
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return 99 |
129 |
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fi |
130 |
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has_nan=`cat tmp1.txt | grep -i nan | wc -l` |
131 |
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if [ $has_nan -gt 0 ] ; then |
132 |
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echo testoutput_for_prop: $OUTPUTFILE contains $has_nan NaN values 1>&2 |
133 |
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return 99 |
134 |
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fi |
135 |
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has_inf=`cat tmp1.txt | grep -i inf | wc -l` |
136 |
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if [ $has_inf -gt 0 ] ; then |
137 |
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echo testoutput_for_prop: $OUTPUTFILE contains $has_inf Inf values 1>&2 |
138 |
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return 99 |
139 |
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fi |
140 |
if [ $debug -gt 0 ]; then |
if [ $debug -gt 0 ]; then |
141 |
echo testoutput_for_prop: join tmp1.txt tmp2.txt 1>&2 |
echo testoutput_for_prop: join tmp1.txt tmp2.txt 1>&2 |
142 |
fi |
fi |
144 |
if [ $debug -gt 0 ]; then |
if [ $debug -gt 0 ]; then |
145 |
echo testoutput_for_prop: compare_lines 1>&2 |
echo testoutput_for_prop: compare_lines 1>&2 |
146 |
fi |
fi |
147 |
compare_lines |
if [ $verbose -gt 1 ]; then |
148 |
digits_of_similarity=$? |
cat tmp3.txt 1>&2 |
149 |
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fi |
150 |
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echo "-1" >> tmp3.txt |
151 |
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# On the SGI O3K (*not* the O2K), "cat -n" inserts a ":" after the line number |
152 |
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cat tmp3.txt | sed -e 's|:||g' > tmp4.txt |
153 |
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digits_of_similarity=`./tmp_cmpnum < tmp4.txt` |
154 |
if [ $digits_of_similarity -eq 99 ]; then |
if [ $digits_of_similarity -eq 99 ]; then |
155 |
if [ $verbose -gt 0 ]; then |
if [ $verbose -gt 0 ]; then |
156 |
echo testoutput_for_prop: No comparison was available for \"$2\" 1>&2 |
echo testoutput_for_prop: No comparison was available for \"$2\" 1>&2 |
161 |
echo There were $digits_of_similarity decimal places of similarity for \"$2\" 1>&2 |
echo There were $digits_of_similarity decimal places of similarity for \"$2\" 1>&2 |
162 |
fi |
fi |
163 |
fi |
fi |
164 |
rm tmp1.txt tmp2.txt tmp3.txt |
rm -f tmp1.txt tmp2.txt tmp3.txt tmp4.txt |
165 |
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|
166 |
return $digits_of_similarity |
return $digits_of_similarity |
167 |
} |
} |
181 |
done |
done |
182 |
} |
} |
183 |
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184 |
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testoutput_ad() |
185 |
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{ |
186 |
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grep $3 $1/results_ad/output_adm.txt | awk '{print NR " " $5}' > t05.txt |
187 |
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grep $3 $1/$2/$OUTPUTFILE | awk '{print NR " " $5}' > t15.txt |
188 |
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grep $3 $1/results_ad/output_adm.txt | awk '{print NR " " $6}' > t06.txt |
189 |
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grep $3 $1/$2/$OUTPUTFILE | awk '{print NR " " $6}' > t16.txt |
190 |
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join t05.txt t15.txt > t5.txt |
191 |
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join t06.txt t16.txt > t6.txt |
192 |
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echo "-1" >> t5.txt |
193 |
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echo "-1" >> t6.txt |
194 |
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digits_5=`./tmp_cmpnum < t5.txt` |
195 |
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digits_6=`./tmp_cmpnum < t6.txt` |
196 |
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dashnum $digits_5 $digits_6 |
197 |
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rm -f t[01][56].txt t[56].txt |
198 |
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} |
199 |
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200 |
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check_for_add_mon_output() |
201 |
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{ |
202 |
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# Check for additional types of monitor output |
203 |
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if test "x$1" = x ; then |
204 |
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return |
205 |
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fi |
206 |
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207 |
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for ii in $PTRACERS_NUM ; do |
208 |
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eval "HAVE_PTR0"$ii"=f" |
209 |
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done |
210 |
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211 |
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ptr_add="trcstat_ptracerXX_min trcstat_ptracerXX_max" |
212 |
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ptr_add="$ptr_add trcstat_ptracerXX_mean trcstat_ptracerXX_sd" |
213 |
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for ii in $PTRACERS_NUM ; do |
214 |
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for jj in $ptr_add ; do |
215 |
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name=`eval "echo $jj | sed -e 's|XX|0"$ii"|g'"` |
216 |
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tst=`grep $name $1 | wc -l | awk '{print $1}'` |
217 |
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if test ! "x$tst" = x0 ; then |
218 |
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eval "HAVE_PTR0"$ii"=t" |
219 |
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fi |
220 |
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done |
221 |
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# eval 'echo "HAVE_PTR0'$ii' = $HAVE_PTR0'$ii'"' |
222 |
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done |
223 |
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} |
224 |
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225 |
testoutput() |
testoutput() |
226 |
{ |
{ |
227 |
# testoutput diretory subdir |
# testoutput directory subdir extension |
228 |
# |
# |
229 |
# test output in "directory" |
# test output in "directory" |
230 |
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if test "x$ADM" = x ; then |
231 |
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if [ $debug -gt 0 ]; then |
232 |
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echo testoutput: testoutput_for_prop $1 cg2d_init_res 1>&2 |
233 |
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fi |
234 |
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testoutput_for_prop $1 "cg2d_init_res" "cg2d init. residual" $2 $3; cg2dres=$? |
235 |
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if [ $debug -gt 0 ]; then |
236 |
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echo testoutput: cg2dres=$cg2dres 1>&2 |
237 |
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fi |
238 |
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testoutput_for_prop $1 "dynstat_theta_min" "theta minimum" $2 $3; tmin=$? |
239 |
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testoutput_for_prop $1 "dynstat_theta_max" "theta maximum" $2 $3; tmax=$? |
240 |
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testoutput_for_prop $1 "dynstat_theta_mean" "theta mean" $2 $3; tmean=$? |
241 |
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testoutput_for_prop $1 "dynstat_theta_sd" "theta s.d." $2 $3; tsd=$? |
242 |
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testoutput_for_prop $1 "dynstat_salt_min" "salt minimum" $2 $3; smin=$? |
243 |
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testoutput_for_prop $1 "dynstat_salt_max" "salt maximum" $2 $3; smax=$? |
244 |
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testoutput_for_prop $1 "dynstat_salt_mean" "salt mean" $2 $3; smean=$? |
245 |
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testoutput_for_prop $1 "dynstat_salt_sd" "salt s.d." $2 $3; ssd=$? |
246 |
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testoutput_for_prop $1 "dynstat_uvel_min" "U minimum" $2 $3; umin=$? |
247 |
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testoutput_for_prop $1 "dynstat_uvel_max" "U maximum" $2 $3; umax=$? |
248 |
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testoutput_for_prop $1 "dynstat_uvel_mean" "U mean" $2 $3; umean=$? |
249 |
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testoutput_for_prop $1 "dynstat_uvel_sd" "U s.d." $2 $3; usd=$? |
250 |
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testoutput_for_prop $1 "dynstat_vvel_min" "V minimum" $2 $3; vmin=$? |
251 |
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testoutput_for_prop $1 "dynstat_vvel_max" "V maximum" $2 $3; vmax=$? |
252 |
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testoutput_for_prop $1 "dynstat_vvel_mean" "V mean" $2 $3; vmean=$? |
253 |
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testoutput_for_prop $1 "dynstat_vvel_sd" "V s.d." $2 $3; vsd=$? |
254 |
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255 |
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# This is for PTRACERS |
256 |
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for ii in $PTRACERS_NUM ; do |
257 |
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eval `echo "p0"$ii"_min=99"` |
258 |
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eval `echo "p0"$ii"_max=99"` |
259 |
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eval `echo "p0"$ii"_mean=99"` |
260 |
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eval `echo "p0"$ii"_sd=99"` |
261 |
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tst=`eval 'echo "$HAVE_PTR0'$ii'"'` |
262 |
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#echo 'tst = '$tst |
263 |
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if test "x$tst" = xt ; then |
264 |
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a="trcstat_ptracer0" |
265 |
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testoutput_for_prop $1 "$a"$ii"_min" "p0"$ii"_min" $2 $3 |
266 |
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RETVAL=$? ; eval `echo "p0"$ii"_min="$RETVAL` |
267 |
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testoutput_for_prop $1 "$a"$ii"_max" "p0"$ii"_max" $2 $3 |
268 |
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RETVAL=$? ; eval `echo "p0"$ii"_max="$RETVAL` |
269 |
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testoutput_for_prop $1 "$a"$ii"_mean" "p0"$ii"_mean" $2 $3 |
270 |
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RETVAL=$? ; eval `echo "p0"$ii"_mean="$RETVAL` |
271 |
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testoutput_for_prop $1 "$a"$ii"_sd" "p0"$ii"_sd" $2 $3 |
272 |
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RETVAL=$? ; eval `echo "p0"$ii"_sd="$RETVAL` |
273 |
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fi |
274 |
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done |
275 |
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|
276 |
if [ $debug -gt 0 ]; then |
allargs="$cg2dres $tmin $tmax $tmean $tsd $smin $smax $smean $ssd" |
277 |
echo testoutput: testoutput_for_prop $1 cg2d_init_res 1>&2 |
allargs="$allargs $umin $umax $umean $usd $vmin $vmax $vmean $vsd" |
278 |
fi |
allargs="$allargs $p01_min $p01_max $p01_mean $p01_sd" |
279 |
testoutput_for_prop $1 "cg2d_init_res" "cg2d init. residual" $2; cg2dres=$? |
allargs="$allargs $p02_min $p02_max $p02_mean $p02_sd" |
280 |
if [ $debug -gt 0 ]; then |
allargs="$allargs $p03_min $p03_max $p03_mean $p03_sd" |
281 |
echo testoutput: cg2dres=$cg2dres 1>&2 |
allargs="$allargs $p04_min $p04_max $p04_mean $p04_sd" |
282 |
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allargs="$allargs $p05_min $p05_max $p05_mean $p05_sd" |
283 |
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|
284 |
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eval "dashnum $allargs" |
285 |
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|
286 |
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else |
287 |
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testoutput_ad $1 $2 "precision_grdchk_result" |
288 |
fi |
fi |
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testoutput_for_prop $1 "dynstat_theta_min" "theta minimum" $2; tmin=$? |
|
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testoutput_for_prop $1 "dynstat_theta_max" "theta maximum" $2; tmax=$? |
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testoutput_for_prop $1 "dynstat_theta_mean" "theta mean" $2; tmean=$? |
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testoutput_for_prop $1 "dynstat_theta_sd" "theta s.d." $2; tsd=$? |
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testoutput_for_prop $1 "dynstat_salt_min" "salt minimum" $2; smin=$? |
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testoutput_for_prop $1 "dynstat_salt_max" "salt maximum" $2; smax=$? |
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testoutput_for_prop $1 "dynstat_salt_mean" "salt mean" $2; smean=$? |
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testoutput_for_prop $1 "dynstat_salt_sd" "salt s.d." $2; ssd=$? |
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testoutput_for_prop $1 "dynstat_uvel_min" "U minimum" $2; umin=$? |
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testoutput_for_prop $1 "dynstat_uvel_max" "U maximum" $2; umax=$? |
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testoutput_for_prop $1 "dynstat_uvel_mean" "U mean" $2; umean=$? |
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testoutput_for_prop $1 "dynstat_uvel_sd" "U s.d." $2; usd=$? |
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testoutput_for_prop $1 "dynstat_vvel_min" "V minimum" $2; vmin=$? |
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testoutput_for_prop $1 "dynstat_vvel_max" "V maximum" $2; vmax=$? |
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testoutput_for_prop $1 "dynstat_vvel_mean" "V mean" $2; vmean=$? |
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testoutput_for_prop $1 "dynstat_vvel_sd" "V s.d." $2; vsd=$? |
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dashnum $cg2dres $tmin $tmax $tmean $tsd $smin $smax $smean $ssd \ |
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$umin $umax $umean $usd $vmin $vmax $vmean $vsd |
|
289 |
} |
} |
290 |
|
|
291 |
genmakemodel() |
genmakemodel() |
294 |
if test "x$NOGENMAKE" = xt ; then |
if test "x$NOGENMAKE" = xt ; then |
295 |
echo "genmake skipped!" |
echo "genmake skipped!" |
296 |
else |
else |
297 |
GENMAKE2="$BASH ../../../tools/genmake2" |
if test "x$BASH" = x ; then |
298 |
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GENMAKE2="../../../tools/genmake2" |
299 |
|
else |
300 |
|
GENMAKE2="$BASH ../../../tools/genmake2 -bash $BASH" |
301 |
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fi |
302 |
( |
( |
303 |
cd $1; |
cd $1; |
304 |
command="$GENMAKE2 -ds -m $MAKE --mods=../code" |
command="$GENMAKE2 -ds -m $MAKE" |
305 |
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if test "x$ADM" = x ; then |
306 |
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command="$command --mods=../code" |
307 |
|
else |
308 |
|
command="$command --mods=../code_ad" |
309 |
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fi |
310 |
if test "x$OPTFILE" != xNONE ; then |
if test "x$OPTFILE" != xNONE ; then |
311 |
command="$command --optfile=$OPTFILE" |
command="$command --optfile=$OPTFILE" |
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# echo " command=\"$command\"" |
|
312 |
fi |
fi |
313 |
if test "x$IEEE" != x ; then |
if test "x$IEEE" != x ; then |
314 |
command="$command -ieee" |
command="$command -ieee" |
315 |
fi |
fi |
316 |
# echo "command: \"$command\"" |
if test "x$MPI" = xt ; then |
317 |
|
command="$command -mpi" |
318 |
|
fi |
319 |
printf 'genmake ... ' 1>&2 |
printf 'genmake ... ' 1>&2 |
320 |
$command > make.log 2>&1 |
$command > make.log 2>&1 |
321 |
RETVAL=$? |
RETVAL=$? |
322 |
for i in genmake_state genmake_optfile genmake_local Makefile ; do |
# Reduce the size of the testing emails! |
323 |
if test -r $i ; then |
head -100 Makefile > $CDIR/Makefile_head |
|
cp $i $CDIR |
|
|
fi |
|
|
done |
|
324 |
if test "x$RETVAL" != x0 ; then |
if test "x$RETVAL" != x0 ; then |
325 |
tail make.log |
tail make.log |
326 |
echo "genmakemodel: genmake failed" 1>&2 |
echo "genmakemodel: genmake failed" 1>&2 |
327 |
cp make.log $CDIR |
cp genmake_* make.log $CDIR |
328 |
return 1 |
return 1 |
329 |
else |
else |
330 |
echo "succesful" 1>&2 |
echo "successful" 1>&2 |
331 |
fi |
fi |
332 |
) |
) |
333 |
fi |
fi |
337 |
{ |
{ |
338 |
# makeclean directory |
# makeclean directory |
339 |
if test "x$NOCLEAN" = xt ; then |
if test "x$NOCLEAN" = xt ; then |
340 |
echo "make CLEAN skipped!" |
echo "make Clean skipped!" |
341 |
else |
else |
342 |
( |
( |
343 |
cd $1; |
cd $1; |
344 |
if test -e output.txt ; then |
#if test -e $OUTPUTFILE ; then rm -f $OUTPUTFILE ; fi |
|
rm -f output.txt |
|
|
fi |
|
|
printf 'make CLEAN ... ' 2>&1 |
|
345 |
if test -r Makefile ; then |
if test -r Makefile ; then |
346 |
$MAKE CLEAN >> make.log 2>&1 |
printf 'clean build-dir: make Clean ... ' 2>&1 |
347 |
|
$MAKE Clean >> make.log 2>&1 |
348 |
RETVAL=$? |
RETVAL=$? |
349 |
if test "x$RETVAL" != x0 ; then |
if test "x$RETVAL" != x0 ; then |
350 |
tail make.log |
tail make.log |
351 |
echo "makeclean: \"make CLEAN\" failed" 1>&2 |
echo "makeclean: \"make Clean\" failed" 1>&2 |
352 |
cp make.log $CDIR"/make.log" |
cp make.log $CDIR"/make.log" |
353 |
return 1 |
return 1 |
354 |
fi |
fi |
355 |
fi |
fi |
356 |
echo succesful 1>&2 |
echo successful 1>&2 |
357 |
|
exit 0 |
358 |
|
) |
359 |
|
fi |
360 |
|
} |
361 |
|
|
362 |
|
run_clean() |
363 |
|
{ |
364 |
|
# run_clean directory |
365 |
|
if test "x$NOCLEAN" = xt ; then |
366 |
|
echo "run_clean skipped!" |
367 |
|
else |
368 |
|
( |
369 |
|
cd $1; |
370 |
|
printf 'clean run-dir ... ' 2>&1 |
371 |
|
# part of what is done after "make clean" when doing "make CLEAN" |
372 |
|
find . -name "*.meta" -exec rm {} \; |
373 |
|
find . -name "*.data" -exec rm {} \; |
374 |
|
find . -name "fort.*" -exec rm {} \; |
375 |
|
find . -type l -exec rm {} \; |
376 |
|
rm -f $EXECUTABLE *.txt STD* *diagnostics.log datetime |
377 |
|
rm -rf mnc_test_* |
378 |
|
echo successful 1>&2 |
379 |
exit 0 |
exit 0 |
380 |
) |
) |
381 |
fi |
fi |
398 |
cp make.log $CDIR"/make.log" |
cp make.log $CDIR"/make.log" |
399 |
return 1 |
return 1 |
400 |
else |
else |
401 |
echo succesful 1>&2 |
echo successful 1>&2 |
402 |
fi |
fi |
403 |
) |
) |
404 |
fi |
fi |
411 |
cd $1; |
cd $1; |
412 |
if test -r Makefile ; then |
if test -r Makefile ; then |
413 |
printf 'make ... ' 1>&2 |
printf 'make ... ' 1>&2 |
414 |
$MAKE >> make.log 2>&1 |
if test "x$ADM" = x ; then |
415 |
|
if test "x$JOBS" = x ; then |
416 |
|
$MAKE >> make.log 2>&1 |
417 |
|
else |
418 |
|
$MAKE -j $JOBS >> make.log 2>&1 |
419 |
|
fi |
420 |
|
else |
421 |
|
$MAKE adall >> make.log 2>&1 |
422 |
|
fi |
423 |
RETVAL=$? |
RETVAL=$? |
424 |
if test "x$RETVAL" != x0 ; then |
if test "x$RETVAL" != x0 ; then |
425 |
tail make.log |
tail make.log |
427 |
cp make.log $CDIR"/make.log" |
cp make.log $CDIR"/make.log" |
428 |
return 1 |
return 1 |
429 |
else |
else |
430 |
echo succesful 1>&2 |
echo successful 1>&2 |
431 |
fi |
fi |
432 |
fi |
fi |
433 |
) |
) |
434 |
} |
} |
435 |
|
|
436 |
|
symlink_mpifiles() |
437 |
|
{ |
438 |
|
# Put special links so that MPI specific files are used |
439 |
|
# This MUST be invoked between makeclean and makelinks because |
440 |
|
# the Makefile will link to non-mpi files by default |
441 |
|
|
442 |
|
dir=$1 |
443 |
|
code_dir=$2 |
444 |
|
BUILD_DIR=$dir/$3 |
445 |
|
CODE_DIR=$dir/$code_dir |
446 |
|
|
447 |
|
# These are files that should replace their counter-part when using -mpi |
448 |
|
MPI_FILES=`(cd $CODE_DIR; find . -name "*_mpi")` |
449 |
|
|
450 |
|
# Is this an MPI run? |
451 |
|
if test "x$MPI" = xt ; then |
452 |
|
# YES: We symbolically link these files to the build |
453 |
|
# dir so long as there is no real file in place |
454 |
|
for ii in $MPI_FILES ; do |
455 |
|
i=`echo $ii | sed 's:^\./::'` |
456 |
|
name=`echo $i | sed 's:_mpi::' ` |
457 |
|
cmp $CODE_DIR/$i $BUILD_DIR/$name > /dev/null 2>&1 |
458 |
|
RETVAL=$? |
459 |
|
if test "x$RETVAL" != x0 ; then |
460 |
|
if ! test -f $BUILD_DIR/$i ; then |
461 |
|
#echo Linking $name to $i |
462 |
|
(cd $BUILD_DIR; ln -sf ../$code_dir/$i $name) |
463 |
|
fi |
464 |
|
fi |
465 |
|
done |
466 |
|
else |
467 |
|
# NO: We undo any _mpi symbolically linked files |
468 |
|
for ii in $MPI_FILES ; do |
469 |
|
i=`echo $ii | sed 's:^\./::'` |
470 |
|
name=`echo $i | sed 's:_mpi::' ` |
471 |
|
if test -L $BUILD_DIR/$name ; then |
472 |
|
cmp $BUILD_DIR/$name "../$code_dir/$name"_mpi > /dev/null 2>&1 |
473 |
|
RETVAL=$? |
474 |
|
if test "x$RETVAL" = x0 ; then |
475 |
|
#echo Un-linking $name from $linktarg |
476 |
|
rm -f $BUILD_DIR/$name |
477 |
|
fi |
478 |
|
fi |
479 |
|
done |
480 |
|
fi |
481 |
|
|
482 |
|
} |
483 |
|
|
484 |
linkdata() |
linkdata() |
485 |
{ |
{ |
486 |
# linkdata flag |
# linkdata run_dir input_dir_1 input_dir_2 ... |
487 |
# |
# |
488 |
# symbolically link data files to run directory |
# symbolically link data files to run directory |
489 |
if test "x$1" = x1 ; then |
if test -d $1 ; then |
490 |
( |
( |
491 |
cd $2 |
cd $1 ; shift |
492 |
files=`( cd ../input ; ls -1 | grep -v CVS )` |
if test -r "../"$1"/eedata.mth" ; then |
493 |
for i in $files ; do |
# found eedata.mth in 1rst input dir and it is readable |
494 |
if test ! -d "../input/"$i ; then |
if test "x$MULTI_THREAD" = "xt" ; then |
495 |
ln -sf "../input/"$i $i |
# multi-threaded test: remove symbolic link & link eedata.mth |
496 |
|
if test -h eedata ; then rm -f eedata ; fi |
497 |
|
if test ! -r eedata ; then |
498 |
|
ln -sf "../"$1"/eedata.mth" eedata ; |
499 |
|
printf 'eedata.mth ' 1>&2 |
500 |
|
fi |
501 |
|
else |
502 |
|
# not multi-threaded test: remove eedata symbolic link |
503 |
|
if test -h eedata ; then rm -f eedata ; fi |
504 |
|
fi |
505 |
|
fi |
506 |
|
for ldir in $* ; do |
507 |
|
if test -d "../"$ldir ; then |
508 |
|
printf 'ldir='${ldir} 1>&2 |
509 |
|
files=`( cd "../"$ldir ; ls -1 | grep -v CVS )` |
510 |
|
for i in $files ; do |
511 |
|
if test ! -d "../"$ldir/$i ; then |
512 |
|
if test ! -r $i ; then |
513 |
|
printf ' '$i 1>&2 |
514 |
|
ln -sf "../"$ldir"/"$i $i |
515 |
|
fi |
516 |
|
fi |
517 |
|
done |
518 |
|
if test -x "../"$ldir"/"prepare_run ; then |
519 |
|
"../"$ldir"/"prepare_run |
520 |
|
fi |
521 |
|
printf ' ; ' 1>&2 |
522 |
fi |
fi |
523 |
done |
done |
524 |
) |
) |
529 |
{ |
{ |
530 |
# runmodel directory |
# runmodel directory |
531 |
# |
# |
532 |
# runs "$COMMAND" in "directory" |
# runs "$COMMAND in "directory" |
533 |
# (where "$COMMAND" is relative to "directory") |
# (where "$COMMAND" is relative to "directory") |
534 |
( |
( |
535 |
cd $1 |
cd $1 |
536 |
printf 'runmodel: ' 1>&2 |
printf 'runmodel in %s ...' $1 1>&2 |
537 |
# make output.txt |
# make output.txt |
538 |
$COMMAND |
echo |
539 |
RETVAL=$? |
if test ! -x $EXECUTABLE -a -x "../"$builddir"/"$EXECUTABLE ; then |
540 |
if test "x$RETVAL" = x0 ; then |
echo " link" $EXECUTABLE "from dir ../"$builddir > run.log_00 |
541 |
cp output.txt $CDIR"/output.txt" |
ln -sf "../"$builddir"/"$EXECUTABLE . |
542 |
|
fi |
543 |
|
if test ! -x $EXECUTABLE ; then |
544 |
|
rm -f run.log ; touch run.log |
545 |
|
if test -f run.log_00 ; then cat run.log_00 >> run.log ; fi |
546 |
|
echo " no executable:" $EXECUTABLE >> run.log |
547 |
|
RETVAL=8 |
548 |
|
ENDVAL=-1 |
549 |
|
else |
550 |
|
if test $OUTPUTFILE -ot $EXECUTABLE ; then |
551 |
|
rm -f run.log ; touch run.log |
552 |
|
if test -f run.log_00 ; then cat run.log_00 >> run.log ; fi |
553 |
|
( eval $COMMAND ) >> run.log 2>&1 |
554 |
|
RETVAL=$? |
555 |
|
else |
556 |
|
RETVAL=0 |
557 |
|
if test -f run.log ; then |
558 |
|
if test -f run.log_00 ; then cat run.log_00 >> run.log ; fi |
559 |
|
echo "---------->> $OUTPUTFILE is up to date " >> run.log 2>&1 |
560 |
|
else |
561 |
|
touch run.log |
562 |
|
if test -f run.log_00 ; then cat run.log_00 >> run.log ; fi |
563 |
|
echo "---------->> $OUTPUTFILE is up to date " >> run.log 2>&1 |
564 |
|
echo " no previous run.log: assume NORMAL END" >> run.log 2>&1 |
565 |
|
fi |
566 |
|
fi |
567 |
|
ENDVAL=`cat run.log | grep -v 'ABNORMAL END' | grep -c 'NORMAL END'` |
568 |
|
fi |
569 |
|
rm -f run.log_00 |
570 |
|
#if test "x$RETVAL" = x0 ; then |
571 |
|
if [ $RETVAL -eq 0 -a $ENDVAL -gt 0 ] ; then |
572 |
|
tail run.log |
573 |
|
echo successful 1>&2 |
574 |
|
# === Reduce the size of the testing emails! |
575 |
|
#cp $OUTPUTFILE $CDIR"/"$OUTPUTFILE |
576 |
|
if test -s STDERR.0000 ; then cp STDERR.0000 $CDIR"/STDERR.0000" ; fi |
577 |
return 0 |
return 0 |
578 |
else |
else |
579 |
|
tail run.log |
580 |
|
echo failed '(run:' $RETVAL ' end:' $ENDVAL ')' 1>&2 |
581 |
|
cp run.log $CDIR"/run.log" |
582 |
|
if test -s STDERR.0000 ; then cp STDERR.0000 $CDIR"/STDERR.0000" ; fi |
583 |
return 1 |
return 1 |
584 |
fi |
fi |
585 |
) |
) |
589 |
{ |
{ |
590 |
# create codelet for comparing model output |
# create codelet for comparing model output |
591 |
|
|
592 |
echo -n "creating the comparison code... " |
printf "creating the comparison code... " |
593 |
cat > tmp_cmpnum.f <<EOFA |
cat > tmp_cmpnum.c <<EOF |
594 |
program cmpnum |
#include <stdio.h> |
595 |
implicit none |
#include <math.h> |
596 |
real*8 a,b,diff |
int main( int argc, char** argv ) { |
597 |
integer linnum,best |
int linnum,best,lncnt; |
598 |
best=-16 |
double a,b,abave,relerr; |
599 |
99 read(*,*,end=70,err=60) linnum,a,b |
best = -22; |
600 |
diff=0.5*(abs(a)+abs(b)) |
lncnt = 0; |
601 |
c print *,a,b,diff,abs(a-b)/diff |
while( 1 & (lncnt+=1) < 999 ) { |
602 |
if (diff.gt.1.e-12) then |
scanf("%d", &linnum); |
603 |
diff=abs(a-b)/diff |
if (linnum == -1) break; |
604 |
if (diff.gt.0.) then |
scanf("%lf", &a); scanf("%lf", &b); |
605 |
c print *,int(log10(diff)),diff |
abave = 0.5*(fabs(a)+fabs(b)); |
606 |
linnum=int(log10(diff)) |
if (abave > 0.0) { |
607 |
best=max(best,linnum) |
relerr=fabs(a-b)/abave; |
608 |
endif |
if (relerr > 0.0) { linnum = (int)rint(log10(relerr)); } |
609 |
else |
else { linnum = -16 ; } |
610 |
if (best.eq.-16.and.diff.ne.0.) best=-22 |
best = (best > linnum) ? best : linnum; |
611 |
endif |
} |
612 |
goto 99 |
} |
613 |
60 stop 'cmpnum: An error occured reading a,b' |
if (lncnt == 999) best=-29; |
614 |
70 print *,-best |
printf("%d\n", -best); |
615 |
end |
return 0; |
616 |
EOFA |
} |
617 |
|
EOF |
618 |
|
$CC -o tmp_cmpnum tmp_cmpnum.c -lm |
619 |
|
|
620 |
f77 tmp_cmpnum.f |
if [ -x ./tmp_cmpnum ]; then |
|
if [ -x ./a.out ]; then |
|
621 |
echo "OK" |
echo "OK" |
622 |
return 0 |
return 0 |
623 |
else |
else |
624 |
echo |
echo |
625 |
echo "createcodelet: failed to compile codelet" |
echo "ERROR: failed to compile comparison code -- please specify" |
626 |
|
echo " a C compiler using the CC environment variable." |
627 |
exit 1 |
exit 1 |
628 |
fi |
fi |
629 |
} |
} |
672 |
|
|
673 |
scandirs() |
scandirs() |
674 |
{ |
{ |
675 |
if [ $# -eq 0 ]; then |
if [ $# -eq 1 ]; then |
676 |
for arg in * ; do |
for arg in * ; do |
677 |
test -d $arg/input && echo $arg |
test -d $arg/$1 && echo $arg |
678 |
done |
done |
679 |
else |
else |
680 |
echo $* |
echo $* |
681 |
fi |
fi |
682 |
} |
} |
683 |
|
|
684 |
|
|
685 |
############################################################################### |
############################################################################### |
|
############################################################################### |
|
|
############################################################################### |
|
686 |
|
|
687 |
|
|
688 |
# Default properties |
# Default properties |
692 |
expts='' |
expts='' |
693 |
# ieee=1 |
# ieee=1 |
694 |
|
|
695 |
IEEE= |
IEEE=true |
696 |
if test "x$MITGCM_IEEE" != x ; then |
if test "x$MITGCM_IEEE" != x ; then |
697 |
IEEE=$MITGCM_IEEE |
IEEE=$MITGCM_IEEE |
698 |
fi |
fi |
703 |
NOGENMAKE=f |
NOGENMAKE=f |
704 |
NOCLEAN=f |
NOCLEAN=f |
705 |
NODEPEND=f |
NODEPEND=f |
706 |
|
POSTCLEAN=f |
707 |
|
|
708 |
BASH= |
BASH= |
709 |
OPTFILE=NONE |
OPTFILE=NONE |
710 |
ADDRESSES= |
ADDRESSES= |
711 |
TESTDIRS= |
TESTDIRS= |
712 |
MPACKDIR="../tools/mpack-1.6" |
MPACKDIR="../tools/mpack-1.6" |
713 |
|
HAVE_MPACK= |
714 |
MPACK="$MPACKDIR/mpack" |
MPACK="$MPACKDIR/mpack" |
715 |
COMMAND="make output.txt" |
COMMAND= |
716 |
MAKE=make |
if test "x$MAKE" = x ; then |
717 |
|
MAKE=make |
718 |
|
fi |
719 |
|
if test "x$CC" = x ; then |
720 |
|
CC=cc |
721 |
|
fi |
722 |
|
JOBS= |
723 |
MPI=f |
MPI=f |
724 |
|
MULTI_THREAD=f |
725 |
|
OUTDIR= |
726 |
|
DELDIR= |
727 |
|
|
728 |
|
ADM= |
729 |
|
|
730 |
echo -n "parsing options... " |
# Additional monitor types |
731 |
|
PTRACERS_NUM="1 2 3 4 5" |
732 |
|
|
733 |
|
printf "parsing options... " |
734 |
|
|
735 |
ac_prev= |
ac_prev= |
736 |
for ac_option ; do |
for ac_option ; do |
779 |
-make=* | --make=*) |
-make=* | --make=*) |
780 |
MAKE=$ac_optarg ;; |
MAKE=$ac_optarg ;; |
781 |
|
|
782 |
|
-odir | --odir) |
783 |
|
ac_prev=OUTDIR ;; |
784 |
|
-odir=* | --odir=*) |
785 |
|
OUTDIR=$ac_optarg ;; |
786 |
|
|
787 |
|
-ptracers | --ptracers | -ptr | --ptr) |
788 |
|
ac_prev=PTRACERS_NUM ;; |
789 |
|
-ptracers=* | --ptracers=* | -ptr=* | --ptr=*) |
790 |
|
PTRACERS_NUM=$ac_optarg ;; |
791 |
|
|
792 |
|
-j) ac_prev=JOBS ;; |
793 |
|
-j=*) JOBS=$ac_optarg ;; |
794 |
|
|
795 |
-clean | --clean) |
-clean | --clean) |
796 |
CLEANUP=t ;; |
CLEANUP=t ; DELDIR=t ;; |
797 |
|
|
798 |
-quick | --quick | -q | --q) |
-quick | --quick | -q | --q) |
799 |
QUICK=t ;; |
QUICK=t ;; |
804 |
-nodepend | --nodepend | -nd | --nd) |
-nodepend | --nodepend | -nd | --nd) |
805 |
NODEPEND=t ;; |
NODEPEND=t ;; |
806 |
|
|
807 |
-mpi) MPI=true ;; |
-postclean | --postclean | -pc | --pc) |
808 |
|
POSTCLEAN=t ;; |
809 |
|
|
810 |
|
-mpi) MPI=t ;; |
811 |
|
|
812 |
|
-mth) MULTI_THREAD=t ;; |
813 |
|
|
814 |
|
-adm | -ad) ADM=t ;; |
815 |
|
|
816 |
-ieee) IEEE=true ;; |
-ieee) IEEE=true ;; |
817 |
-noieee) IEEE= ;; |
-noieee) IEEE= ;; |
820 |
-debug) debug=1 ;; |
-debug) debug=1 ;; |
821 |
-quiet) verbose=0 ;; |
-quiet) verbose=0 ;; |
822 |
|
|
823 |
|
-deldir | -dd) DELDIR=t ;; |
824 |
|
|
825 |
-*) |
-*) |
826 |
echo "Error: unrecognized option: "$ac_option |
echo "Error: unrecognized option: "$ac_option |
827 |
usage |
usage |
843 |
fi |
fi |
844 |
|
|
845 |
if test "x$TESTDIRS" = x ; then |
if test "x$TESTDIRS" = x ; then |
846 |
TESTDIRS=`scandirs` |
if test "x$ADM" = xt ; then |
847 |
|
TESTDIRS=`scandirs results_ad` |
848 |
|
else |
849 |
|
TESTDIRS=`scandirs results` |
850 |
|
fi |
851 |
|
else |
852 |
|
#- expand group of experiments: |
853 |
|
LIST=" " |
854 |
|
for xx in $TESTDIRS |
855 |
|
do |
856 |
|
case $xx in |
857 |
|
'basic') LIST=${LIST}" aim.5l_cs hs94.128x64x5 ideal_2D_oce" |
858 |
|
LIST=${LIST}" lab_sea tutorial_baroclinic_gyre" |
859 |
|
LIST=${LIST}" tutorial_global_oce_latlon tutorial_plume_on_slope" |
860 |
|
;; |
861 |
|
'tutorials') |
862 |
|
LIST=${LIST}" "`ls | grep 'tutorial_'` ;; |
863 |
|
*) LIST=${LIST}" "$xx ;; |
864 |
|
esac |
865 |
|
done |
866 |
|
#echo 'LIST='${LIST}'<' |
867 |
|
#- remove duplicate and non-directory: |
868 |
|
TESTDIRS=" " |
869 |
|
for xx in $LIST |
870 |
|
do |
871 |
|
if test -d $xx ; then |
872 |
|
yy=`echo $TESTDIRS | grep -c $xx` |
873 |
|
if test $yy = 0 ; then TESTDIRS=${TESTDIRS}" "$xx ; fi |
874 |
|
else |
875 |
|
echo " -- skip \"$xx\" : not a directory !" |
876 |
|
fi |
877 |
|
done |
878 |
fi |
fi |
879 |
|
#echo 'TESTDIRS='${TESTDIRS}'<' |
880 |
|
|
881 |
if test "x$OPTFILE" = xNONE -a "x$MITGCM_OF" != x ; then |
if test "x$OPTFILE" = xNONE -a "x$MITGCM_OF" != x ; then |
882 |
OPTFILE=$MITGCM_OF |
OPTFILE=$MITGCM_OF |
883 |
fi |
fi |
884 |
|
|
885 |
echo "OK" |
if test "x$ADM" = xt ; then |
886 |
|
EXECUTABLE="mitgcmuv_ad" |
887 |
|
OUTPUTFILE="output_adm.txt" |
888 |
|
else |
889 |
|
EXECUTABLE="mitgcmuv" |
890 |
|
OUTPUTFILE="output.txt" |
891 |
|
fi |
892 |
|
|
893 |
|
if test "x$COMMAND" = x ; then |
894 |
|
COMMAND="./$EXECUTABLE > $OUTPUTFILE" |
895 |
|
fi |
896 |
|
if test "x$MPI" = xt ; then |
897 |
|
OUTPUTFILE="STDOUT.0000" |
898 |
|
fi |
899 |
|
|
900 |
|
#echo "OK" |
901 |
|
echo "OK (COMMAND= $COMMAND )" |
902 |
|
|
903 |
# create the FORTRAN comparison code |
# create the FORTRAN comparison code |
904 |
createcodelet |
createcodelet |
905 |
|
|
906 |
# build the mpack utility |
# build the mpack utility |
907 |
build_mpack |
if test "x$ADDRESSES" = xNONE -o "x$ADDRESSES" = x ; then |
908 |
|
echo "skipping mpack build" |
909 |
|
else |
910 |
|
build_mpack |
911 |
|
fi |
912 |
|
|
913 |
# Create a uniquely named directory to store results |
# Create a uniquely named directory to store results |
914 |
MACH=`hostname` |
MACH=`hostname` |
915 |
UNAMEA=`uname -a` |
UNAMEA=`uname -a` |
916 |
DATE=`date +%Y%m%d` |
DATE=`date +%Y%m%d` |
917 |
BASE=$MACH"_"$DATE"_" |
BASE="tr_"$MACH"_"$DATE"_" |
918 |
|
if test "x$OUTDIR" != x ; then |
919 |
|
BASE="tr_"$OUTDIR"_"$DATE"_" |
920 |
|
fi |
921 |
DNUM=0 |
DNUM=0 |
922 |
DRESULTS="$BASE$DNUM" |
DRESULTS="$BASE$DNUM" |
923 |
while test -e $DRESULTS ; do |
while test -e $DRESULTS ; do |
927 |
mkdir $DRESULTS |
mkdir $DRESULTS |
928 |
RETVAL=$? |
RETVAL=$? |
929 |
if test "x$RETVAL" != x0 ; then |
if test "x$RETVAL" != x0 ; then |
930 |
echo "Error: can't create results directory \"./$DRESULTS\"" |
echo "ERROR: Can't create results directory \"./$DRESULTS\"" |
931 |
exit 1 |
exit 1 |
932 |
fi |
fi |
933 |
SUMMARY="$DRESULTS/summary.txt" |
SUMMARY="$DRESULTS/summary.txt" |
934 |
echo -n "Start time: " >> $SUMMARY |
printf "Start time: " >> $SUMMARY |
935 |
date > $SUMMARY |
start_date=`date` |
936 |
date > dfile |
echo $start_date > $SUMMARY |
|
cat << EOF >> $SUMMARY |
|
|
T S U V |
|
|
G D M c m s m s m s m s |
|
|
E p a R g m m e . m m e . m m e . m m e . |
|
|
N n k u 2 i a a d i a a d i a a d i a a d |
|
|
2 d e n d n x n . n x n . n x n . n x n . |
|
|
|
|
|
EOF |
|
|
|
|
|
NDIR=0 |
|
937 |
|
|
938 |
of_path= |
of_path= |
939 |
if test "x$OPTFILE" != xNONE ; then |
if test "x$OPTFILE" != xNONE ; then |
947 |
fi |
fi |
948 |
file=${OPTFILE##*/} |
file=${OPTFILE##*/} |
949 |
OPTFILE=$of_path/$file |
OPTFILE=$of_path/$file |
950 |
|
cp $OPTFILE $DRESULTS |
951 |
|
echo >> $SUMMARY |
952 |
|
echo " OPTFILE=$OPTFILE" >> $SUMMARY |
953 |
else |
else |
954 |
echo |
echo | tee $SUMMARY |
955 |
echo "WARNING: can't read OPTFILE=\"$OPTFILE\" but will try to use it..." |
echo "ERROR: can't read OPTFILE=\"$OPTFILE\"" | tee $SUMMARY |
956 |
|
exit 1 |
957 |
fi |
fi |
958 |
|
else |
959 |
|
echo >> $SUMMARY |
960 |
|
echo "No \"OPTFILE\" was explicitly specified by testreport," >> $SUMMARY |
961 |
|
echo " so the genmake default will be used." >> $SUMMARY |
962 |
fi |
fi |
963 |
echo |
echo |
|
echo "OPTFILE=$OPTFILE" >> $SUMMARY |
|
964 |
echo >> $SUMMARY |
echo >> $SUMMARY |
965 |
|
if test "x$ADM" = x ; then |
966 |
|
line_0=" ----T----- ----S----- ----U----- ----V-----" |
967 |
|
line_1="G D M c m s m s m s m s" |
968 |
|
line_2="E p a R g m m e . m m e . m m e . m m e ." |
969 |
|
line_3="N n k u 2 i a a d i a a d i a a d i a a d" |
970 |
|
line_4="2 d e n d n x n . n x n . n x n . n x n ." |
971 |
|
for ii in $PTRACERS_NUM ; do |
972 |
|
# tst=`eval 'echo $HAVE_PTR0'$ii` |
973 |
|
# if test "x$tst" = xt ; then |
974 |
|
line_0="$line_0 --PTR 0"$ii"--" |
975 |
|
line_1="$line_1 m s" |
976 |
|
line_2="$line_2 m m e ." |
977 |
|
line_3="$line_3 i a a d" |
978 |
|
line_4="$line_4 n x n ." |
979 |
|
# fi |
980 |
|
done |
981 |
|
echo "$line_0" | tee -a $SUMMARY |
982 |
|
echo "$line_1" | tee -a $SUMMARY |
983 |
|
echo "$line_2" | tee -a $SUMMARY |
984 |
|
echo "$line_3" | tee -a $SUMMARY |
985 |
|
echo "$line_4" | tee -a $SUMMARY |
986 |
|
echo " " | tee -a $SUMMARY |
987 |
|
else |
988 |
|
echo "ADJOINT=true" >> $SUMMARY |
989 |
|
echo >> $SUMMARY |
990 |
|
cat << EOF | tee -a $SUMMARY |
991 |
|
G D M C G |
992 |
|
E p a R o r |
993 |
|
N n k u s a |
994 |
|
2 d e n t d |
995 |
|
|
996 |
|
EOF |
997 |
|
fi |
998 |
|
|
999 |
# ...and each test directory... |
# ...and each test directory... |
1000 |
for dir in $TESTDIRS ; do |
for dir in $TESTDIRS ; do |
1002 |
# Cleanup only! |
# Cleanup only! |
1003 |
if test "x$CLEANUP" = xt ; then |
if test "x$CLEANUP" = xt ; then |
1004 |
if test -r $dir/build/Makefile ; then |
if test -r $dir/build/Makefile ; then |
1005 |
|
echo ' ------ clean dir:' $dir/build |
1006 |
( cd $dir/build ; make CLEAN ) |
( cd $dir/build ; make CLEAN ) |
1007 |
fi |
fi |
1008 |
if test -r $dir/input/Makefile ; then |
if test -d $dir/run/CVS ; then |
1009 |
( cd $dir/input ; make CLEAN ) |
echo ' ------ clean dir:' $dir/run |
1010 |
|
run_clean $dir/run |
1011 |
fi |
fi |
1012 |
|
( |
1013 |
|
cd $dir |
1014 |
|
rm -rf tr_run.* |
1015 |
|
) |
1016 |
continue |
continue |
1017 |
fi |
fi |
1018 |
|
|
1019 |
# Verify that the testdir exists and contains previous |
# Verify that the testdir exists and contains previous |
1020 |
# results in the correct location--or skip this directory! |
# results in the correct location--or skip this directory! |
1021 |
if test ! -r $dir"/results/output.txt" ; then |
fout= |
1022 |
echo "can't read \"$dir/results/output.txt\" -- skipping $dir" |
if test "x$ADM" = x ; then |
1023 |
|
fout=$dir"/results/output.txt" |
1024 |
|
else |
1025 |
|
fout=$dir"/results_ad/output_adm.txt" |
1026 |
|
fi |
1027 |
|
if test ! -r $fout ; then |
1028 |
|
echo "can't read \"$fout\" -- skipping $dir" |
1029 |
continue |
continue |
1030 |
fi |
fi |
1031 |
|
if test "x$ADM" = x ; then |
1032 |
|
check_for_add_mon_output $fout |
1033 |
|
fi |
1034 |
|
|
1035 |
echo "-------------------------------------------------------------------------------" |
# Check for additional types of monitor output |
|
echo |
|
|
echo "Experiment: $dir" |
|
|
echo |
|
|
unset genmake makedepend make run |
|
|
results='-- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- --' |
|
1036 |
|
|
1037 |
builddir="input" |
builddir="build" |
1038 |
rundir="input" |
if test ! -d $dir/$builddir ; then mkdir $dir/$builddir ; fi |
1039 |
use_seperate_build=0 |
rundir="run" |
1040 |
if test -d $dir/build -a -r $dir/build ; then |
#rundir=$builddir |
1041 |
builddir="build" |
if test ! -d $dir/$rundir ; then |
1042 |
rundir="build" |
rundir=$builddir |
|
use_seperate_build=1 |
|
|
linkdata $use_seperate_build $dir/$rundir |
|
1043 |
fi |
fi |
1044 |
|
|
1045 |
CODE_DIR=$dir/code |
if test "x$ADM" = x ; then |
1046 |
|
code_dir=code |
1047 |
|
CODE_DIR=$dir/code |
1048 |
|
input_dirs='input' |
1049 |
|
else |
1050 |
|
code_dir=code_ad |
1051 |
|
CODE_DIR=$dir/code_ad |
1052 |
|
input_dirs='input_ad input' |
1053 |
|
fi |
1054 |
BUILD_DIR=$dir/$builddir |
BUILD_DIR=$dir/$builddir |
|
MPI_FILES="CPP_EEOPTIONS.h_mpi SIZE.h_mpi" |
|
|
NOMPI_FILES="CPP_EEOPTIONS.h_nompi SIZE.h_nompi" |
|
1055 |
|
|
1056 |
# Is this an MPI run? |
if test ! -r $CODE_DIR"/SIZE.h_mpi" -a "x$MPI" = "xt" ; then |
1057 |
if test "x$MPI" = xt ; then |
echo "can't find \"$CODE_DIR/SIZE.h_mpi\" -- skipping $dir" |
1058 |
FILES=$MPI_FILES |
continue |
|
endings="_mpi" |
|
|
else |
|
|
FILES=$NOMPI_FILES |
|
|
endings="_nompi" |
|
1059 |
fi |
fi |
1060 |
|
if test ! -r $dir"/input/eedata.mth" -a "x$MULTI_THREAD" = "xt" ; then |
1061 |
# Check to see that we have the files |
echo "can't find \"$dir/input/eedata.mth\" -- skipping $dir" |
|
have_files=t |
|
|
for i in $FILES ; do |
|
|
if test ! -r $CODE_DIR/$i ; then |
|
|
echo "Warning: can't read file $CODE_DIR/$i" |
|
|
have_files=f |
|
|
fi |
|
|
done |
|
|
if test "x$have_files" != xt -a "x$MPI" = xt ; then |
|
|
echo "Skipping $dir due to lack of input files (see above warning)" |
|
1062 |
continue |
continue |
1063 |
fi |
fi |
1064 |
|
|
1065 |
# If we have the $FILES and they differ, copy the $FILES to $BUILD_DIR |
# Check whether there are "extra runs" for this testdir |
1066 |
if test "x$have_files" = xt ; then |
extra_runs= |
1067 |
for i in $FILES ; do |
if test "x$ADM" = x ; then |
1068 |
sstr="s|$endings||" |
ex_run_dirs=`( cd $dir ; echo input.* )` |
1069 |
name=`echo $i | sed -e $sstr ` |
#echo "ex_run_dirs='$ex_run_dirs'" |
1070 |
cmp $CODE_DIR/$i $BUILD_DIR/$name > /dev/null 2>&1 |
for exd in $ex_run_dirs ; do |
1071 |
RETVAL=$? |
name=`echo $exd | sed -e 's/input.//g'` |
1072 |
if test "x$RETVAL" != x0 ; then |
outf="$dir/results/output.$name.txt" |
1073 |
cp $CODE_DIR/$i $BUILD_DIR/$name |
if test -f $outf -a -r $outf ; then |
1074 |
|
if test "x$MULTI_THREAD" = "xt" ; then |
1075 |
|
if test -r $dir"/"$exd"/eedata.mth" ; then |
1076 |
|
extra_runs="$extra_runs $name" |
1077 |
|
#else echo $dir"/"$exd"/eedata.mth: not found" |
1078 |
|
fi |
1079 |
|
else |
1080 |
|
extra_runs="$extra_runs $name" |
1081 |
|
fi |
1082 |
fi |
fi |
1083 |
done |
done |
1084 |
fi |
fi |
1085 |
|
|
1086 |
|
echo "-------------------------------------------------------------------------------" |
1087 |
|
echo |
1088 |
|
if test "x$extra_runs" = "x" ; then |
1089 |
|
echo "Experiment: $dir" |
1090 |
|
else |
1091 |
|
echo "Experiment: $dir ; extra_runs=$extra_runs" |
1092 |
|
fi |
1093 |
|
echo |
1094 |
|
unset genmake makedepend make run |
1095 |
|
results='-- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- --' |
1096 |
|
|
1097 |
# Create an output dir for each OPTFILE/tdir combination |
# Create an output dir for each OPTFILE/tdir combination |
1098 |
CDIR=$DRESULTS"/"$DRESULTS"_"$NDIR |
rel_CDIR=$DRESULTS"/"$dir |
1099 |
mkdir $CDIR |
mkdir $rel_CDIR |
1100 |
CDIR=`pwd`"/$CDIR" |
CDIR=`pwd`"/$rel_CDIR" |
1101 |
|
|
1102 |
if test "x$CLEANUP" = xt ; then |
if test "x$CLEANUP" = xt ; then |
1103 |
makeclean $dir/$builddir |
echo '====>>> this is to check that we never go through this part <<< ===' |
1104 |
|
makeclean $dir/$builddir \ |
1105 |
|
&& run_clean $dir/$rundir |
1106 |
else |
else |
1107 |
genmakemodel $dir/$builddir && genmake=Y \ |
genmakemodel $dir/$builddir && genmake=Y \ |
1108 |
&& makeclean $dir/$builddir \ |
&& makeclean $dir/$builddir \ |
1109 |
|
&& run_clean $dir/$rundir \ |
1110 |
|
&& symlink_mpifiles $dir $code_dir $builddir \ |
1111 |
&& makedependmodel $dir/$builddir && makedepend=Y \ |
&& makedependmodel $dir/$builddir && makedepend=Y \ |
1112 |
&& makemodel $dir/$builddir && make=Y \ |
&& makemodel $dir/$builddir && make=Y \ |
1113 |
&& linkdata $use_seperate_build $dir/$rundir \ |
&& linkdata $dir/$rundir $input_dirs \ |
1114 |
&& runmodel $dir/$rundir && run=Y \ |
&& runmodel $dir/$rundir && run=Y \ |
1115 |
&& results=`testoutput $dir $rundir` |
&& results=`testoutput $dir $rundir "txt"` |
1116 |
fi |
fi |
1117 |
|
|
1118 |
echo |
echo |
1119 |
formatresults $dir ${genmake:-N} ${makedepend:-N} ${make:-N} \ |
if test "x$ADM" = x ; then |
1120 |
${run:-N} $results |
fres=`formatresults $dir ${genmake:-N} ${makedepend:-N} ${make:-N} ${run:-N} $results` |
1121 |
echo |
echo |
1122 |
formatresults $dir ${genmake:-N} ${makedepend:-N} ${make:-N} \ |
echo "$fres" >> $SUMMARY |
1123 |
${run:-N} $results >> $SUMMARY |
echo "fresults='$fres'" > $CDIR"/summary.txt" |
1124 |
echo "fresults='" > $CDIR"/summary.txt" |
echo "MACH='$MACH'" >> $CDIR"/summary.txt" |
1125 |
formatresults $dir ${genmake:-N} ${makedepend:-N} ${make:-N} \ |
echo "UNAMEA='$UNAMEA'" >> $CDIR"/summary.txt" |
1126 |
${run:-N} $results >> $CDIR"/summary.txt" |
echo "DATE='$DATE'" >> $CDIR"/summary.txt" |
1127 |
echo "'" >> $CDIR"/summary.txt" |
echo "tdir='$dir'" >> $CDIR"/summary.txt" |
1128 |
echo "MACH='$MACH'" >> $CDIR"/summary.txt" |
|
1129 |
echo "UNAMEA='$UNAMEA'" >> $CDIR"/summary.txt" |
for ex in $extra_runs ; do |
1130 |
echo "DATE='$DATE'" >> $CDIR"/summary.txt" |
unset run |
1131 |
echo "tdir='$dir'" >> $CDIR"/summary.txt" |
results='-- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- --' |
1132 |
|
# Create an output dir for each OPTFILE/tdir.ex combination |
1133 |
( |
rel_CDIR=$DRESULTS"/"$dir"."$ex |
1134 |
cd $DRESULTS |
mkdir $rel_CDIR |
1135 |
tar -cf $NDIR".tar" $DRESULTS"_"$NDIR > /dev/null 2>&1 |
CDIR=`pwd`"/$rel_CDIR" |
1136 |
gzip $NDIR".tar" |
test ! -e "$dir/tr_run.$ex" && mkdir "$dir/tr_run.$ex" |
1137 |
) |
run_clean $dir/tr_run.$ex |
1138 |
|
linkdata $dir/tr_run.$ex input.$ex input |
1139 |
if test "x$ADDRESSES" = xNONE -o "x$ADDRESSES" = x ; then |
runmodel $dir/tr_run.$ex && run=Y \ |
1140 |
echo "No mail sent" |
&& results=`testoutput $dir tr_run.$ex ${ex}".txt"` |
1141 |
|
fres=`printf '%s %s %s %s' ${genmake:-N} ${makedepend:-N} ${make:-N} ${run:-N}` |
1142 |
|
fres=`formatresults $dir ${genmake:-N} ${makedepend:-N} ${make:-N} ${run:-N} $results` |
1143 |
|
fres="$fres.$ex" |
1144 |
|
echo |
1145 |
|
echo "$fres" >> $SUMMARY |
1146 |
|
echo "fresults='$fres'" > $CDIR"/summary.txt" |
1147 |
|
echo "MACH='$MACH'" >> $CDIR"/summary.txt" |
1148 |
|
echo "UNAMEA='$UNAMEA'" >> $CDIR"/summary.txt" |
1149 |
|
echo "DATE='$DATE'" >> $CDIR"/summary.txt" |
1150 |
|
echo "tdir='$dir.$ex'" >> $CDIR"/summary.txt" |
1151 |
|
if test "x$POSTCLEAN" = xt ; then |
1152 |
|
run_clean $dir/tr_run.$ex |
1153 |
|
fi |
1154 |
|
done |
1155 |
else |
else |
1156 |
$MPACK -s MITgcm-test -m 1000000 $DRESULTS"/"$NDIR".tar.gz" $ADDRESSES |
fres=`printf '%s %s %s %s' ${genmake:-N} ${makedepend:-N} ${make:-N} ${run:-N}` |
1157 |
RETVAL=$? |
fres=$fres"$results $dir" |
1158 |
if test "x$RETVAL" != x0 ; then |
echo |
1159 |
echo "Warning: \"$MPACK\" failed -- please contact <edhill@mitgcm.org>" |
echo "$fres" >> $SUMMARY |
1160 |
else |
echo "fresults='$fres'" > $CDIR"/summary.txt" |
1161 |
rm -f $DRESULTS"/"$NDIR".tar*" |
echo "MACH='$MACH'" >> $CDIR"/summary.txt" |
1162 |
fi |
echo "UNAMEA='$UNAMEA'" >> $CDIR"/summary.txt" |
1163 |
|
echo "DATE='$DATE'" >> $CDIR"/summary.txt" |
1164 |
|
echo "tdir='$dir'" >> $CDIR"/summary.txt" |
1165 |
|
grep -A3 'Seconds in section "ALL' $dir/$rundir/$OUTPUTFILE \ |
1166 |
|
>> $CDIR"/summary.txt" |
1167 |
fi |
fi |
1168 |
|
|
1169 |
echo "-------------------------------------------------------------------------------" |
#postclean $dir/$builddir |
1170 |
|
if test "x$POSTCLEAN" = xt ; then |
1171 |
|
makeclean $dir/$builddir \ |
1172 |
|
&& run_clean $dir/$rundir |
1173 |
|
fi |
1174 |
|
|
1175 |
NDIR=$(( $NDIR + 1 )) |
echo "-------------------------------------------------------------------------------" |
1176 |
|
|
1177 |
done |
done |
1178 |
|
|
1179 |
echo -n "Start time: " >> $SUMMARY |
printf "Start time: " >> $SUMMARY |
1180 |
date -r dfile >> $SUMMARY |
echo $start_date >> $SUMMARY |
1181 |
echo -n "End time: " >> $SUMMARY |
printf "End time: " >> $SUMMARY |
1182 |
date >> $SUMMARY |
date >> $SUMMARY |
1183 |
|
|
1184 |
rm tmp_cmpnum.f a.out dfile |
# If addresses were supplied and mpack built successfully, then try |
1185 |
|
# to send email using mpack. |
1186 |
|
if test "x$ADDRESSES" = xNONE -o "x$ADDRESSES" = x ; then |
1187 |
|
echo "No results email was sent." |
1188 |
|
else |
1189 |
|
if test "x$HAVE_MPACK" = xt ; then |
1190 |
|
tar -cf $DRESULTS".tar" $DRESULTS > /dev/null 2>&1 \ |
1191 |
|
&& gzip $DRESULTS".tar" \ |
1192 |
|
&& $MPACK -s MITgcm-test -m 3555000 $DRESULTS".tar.gz" $ADDRESSES |
1193 |
|
RETVAL=$? |
1194 |
|
if test "x$RETVAL" != x0 ; then |
1195 |
|
echo |
1196 |
|
echo "Warning: The tar, gzip, & mpack step failed. Please send email" |
1197 |
|
echo " to <MITgcm-support@mitgcm.org> for help. You may copy the " |
1198 |
|
echo " summary of results from the directory \"$DRESULTS\"." |
1199 |
|
echo |
1200 |
|
else |
1201 |
|
echo |
1202 |
|
echo "An email containing results was sent to the following addresses:" |
1203 |
|
echo " \"$ADDRESSES\"" |
1204 |
|
echo |
1205 |
|
fi |
1206 |
|
test -f $DRESULTS".tar" && rm -f $DRESULTS".tar" |
1207 |
|
test -f $DRESULTS".tar.gz" && rm -f $DRESULTS".tar.gz" |
1208 |
|
fi |
1209 |
|
fi |
1210 |
|
|
1211 |
|
# rm -f tmp_cmpnum.f a.out |
1212 |
|
rm -f tmp_cmpnum.c tmp_cmpnum |
1213 |
|
|
1214 |
if test "x$CLEANUP" != xt ; then |
if test "x$CLEANUP" != xt ; then |
1215 |
cat $SUMMARY |
cat $SUMMARY | sed 's/ -- -- -- --//g' |
1216 |
if test -e tr.out ; then |
if test -e tr_out.txt ; then |
1217 |
mv tr.out tr.out.old |
mv tr_out.txt tr_out.txt.old |
1218 |
fi |
fi |
1219 |
cat $SUMMARY > tr.out |
cat $SUMMARY | sed 's/ -- -- -- --//g' > tr_out.txt |
1220 |
|
fi |
1221 |
|
|
1222 |
|
if test "x$DELDIR" = xt ; then |
1223 |
|
rm -rf $DRESULTS |
1224 |
fi |
fi |
1225 |
|
|