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Revision 1.79 - (show annotations) (download)
Wed Jun 7 01:20:26 2006 UTC (17 years, 9 months ago) by heimbach
Branch: MAIN
CVS Tags: checkpoint58h_post, checkpoint58g_post
Changes since 1.78: +1 -2 lines
o make staf default, rather than taf
o in testreport remover hard-wired adof

1 #! /usr/bin/env bash
2 #
3 # $Header: /u/gcmpack/MITgcm/verification/testreport,v 1.78 2006/05/22 00:14:29 jmc Exp $
4 # $Name: $
5 #
6
7 usage()
8 {
9 echo
10 echo "Usage: $0 [OPTIONS]"
11 echo
12 echo "where possible OPTIONS are:"
13 echo " (-help|-h) print usage"
14 echo " (-mpi) use MPI input files"
15 echo " (-ieee|-noieee) if possible, use IEEE compiler flags"
16 echo " (DEF=\"-ieee\")"
17 echo " (-optfile=|-of=)STRING list of optfiles to use"
18 echo " (-a|-addr) STRING list of email recipients"
19 echo " (DEF=\"edhill@mitgcm.org\")"
20 echo " (-t|-tdir) STRING list of test dirs to use"
21 echo " (DEF=\"\" which builds all)"
22 echo " (-b|-bash) STRING preferred location of a \"bash\" or"
23 echo " Bourne-compatible \"sh\" shell"
24 echo " (DEF=\"\" for \"bash\")"
25 echo " (-adm|-ad) perform an adjoint run"
26 echo " (-command) STRING command to run"
27 echo " (DEF=\"make output.txt\")"
28 echo " (-m|-make) STRING command to use for \"make\""
29 echo " (DEF=\"make\")"
30 echo " (-odir) STRING used to build output directory name"
31 echo " (DEF=\"hostname\")"
32 echo " (-ptracers|-ptr) STRING specify which ptracers to test"
33 echo " (DEF=\"1 2 3 4 5\")"
34 echo " (-j) JOBS use \"make -j JOBS\" for parallel builds"
35 echo " (-clean) *ONLY* run \"make CLEAN\""
36 echo " (-quick|-q) same as \"-nogenmake -noclean -nodepend\""
37 echo " (-nogenmake|-ng) skip the genmake stage"
38 echo " (-noclean|-nc) skip the \"make clean\" stage"
39 echo " (-nodepend|-nd) skip the \"make depend\" stage"
40 echo " (-deldir|-dd) on success, delete the output directory"
41 echo
42 echo "and where STRING can be a whitespace-delimited list"
43 echo "such as:"
44 echo
45 echo " -t 'exp0 exp2 exp3' "
46 echo " -addr='abc@123.com testing@home.org'"
47 echo
48 echo "provided that the expression is properly quoted within the current"
49 echo "shell (note the use of single quotes to protect white space)."
50 echo
51 exit 1
52 }
53
54 # build the mpack utility
55 build_mpack()
56 {
57 printf "building the mpack utility... "
58 if test ! -x "$MPACKDIR/mpack" ; then
59 if test ! -d $MPACKDIR ; then
60 echo
61 echo "Error: can't find \"$MPACKDIR\""
62 echo " are you sure this program is being run in the correct "
63 echo " (that is, \"MITGCM_ROOT\verification\") directory?"
64 echo
65 HAVE_MPACK=f
66 fi
67 printf "building mpack... "
68 if test "x$CC" = x ; then
69 export CC=cc
70 fi
71 ( cd $MPACKDIR && ./configure && $MAKE ) > tr_build_mpack.out 2>&1
72 RETVAL=$?
73 if test "x$RETVAL" != x0 ; then
74 echo
75 echo "Error building the mpack tools at: $MPACK_DIR"
76 echo
77 HAVE_MPACK=f
78 else
79 rm -f tr_build_mpack.out
80 HAVE_MPACK=t
81 fi
82 else
83 HAVE_MPACK=t
84 fi
85 echo "OK"
86 }
87
88 testoutput_for_prop()
89 {
90 # testoutput_for_prop dir s1 label subdir extension
91 #
92 # compares files in $dir/$subdir/output.txt and $dir/results/output.txt
93 # using search strings s1 and text label
94
95 if [ $debug -gt 0 ]; then
96 echo testoutput_for_prop: grep "$2" $1/$4/output.txt 1>&2
97 fi
98 if [ -r $1/$4/output.txt ]; then
99 grep "$2" $1/$4/output.txt | sed 's/.*=//' | cat -n > tmp1.txt
100 lncntA=`wc -l tmp1.txt | awk '{print $1}' `
101 if [ $lncntA -lt 3 ]; then
102 if [ $verbose -gt 0 ]; then
103 echo Not enough lines of output when searching for "$2" 1>&2
104 fi
105 return 99
106 fi
107 else
108 echo testoutput_for_prop: output.txt from model run was not readable 1>&2
109 return 99
110 fi
111 if [ $debug -gt 0 ]; then
112 echo testoutput_for_prop: grep "$2" $1/results/output.txt$5 1>&2
113 fi
114 grep "$2" $1/results/output.txt$5 | sed 's/.*=//' | cat -n > tmp2.txt
115 lncntB=`wc -l tmp2.txt | awk '{print $1}' `
116 if [ $lncntB -lt 3 ]; then
117 if [ $verbose -gt 0 ]; then
118 echo Not enough lines of output when searching for "$2" 1>&2
119 fi
120 return 99
121 fi
122 if [ $lncntA -ne $lncntB ]; then
123 if [ $verbose -gt 0 ]; then
124 echo Not same Nb of lines when searching for "$2" ":" $lncntA $lncntB 1>&2
125 fi
126 return 99
127 fi
128 has_nan=`cat tmp1.txt | grep -i nan | wc -l`
129 if [ $has_nan -gt 0 ] ; then
130 echo testoutput_for_prop: output.txt contains $has_nan NaN values 1>&2
131 return 99
132 fi
133 has_inf=`cat tmp1.txt | grep -i inf | wc -l`
134 if [ $has_inf -gt 0 ] ; then
135 echo testoutput_for_prop: output.txt contains $has_inf Inf values 1>&2
136 return 99
137 fi
138 if [ $debug -gt 0 ]; then
139 echo testoutput_for_prop: join tmp1.txt tmp2.txt 1>&2
140 fi
141 join tmp1.txt tmp2.txt | awk '{print $1 " " $2 " " $3}' > tmp3.txt
142 if [ $debug -gt 0 ]; then
143 echo testoutput_for_prop: compare_lines 1>&2
144 fi
145 if [ $verbose -gt 1 ]; then
146 cat tmp3.txt 1>&2
147 fi
148 echo "-1" >> tmp3.txt
149 # On the SGI O3K (*not* the O2K), "cat -n" inserts a ":" after the line number
150 cat tmp3.txt | sed -e 's|:||g' > tmp4.txt
151 digits_of_similarity=`./tmp_cmpnum < tmp4.txt`
152 if [ $digits_of_similarity -eq 99 ]; then
153 if [ $verbose -gt 0 ]; then
154 echo testoutput_for_prop: No comparison was available for \"$2\" 1>&2
155 fi
156 digits_of_similarity=99
157 else
158 if [ $verbose -gt 0 ]; then
159 echo There were $digits_of_similarity decimal places of similarity for \"$2\" 1>&2
160 fi
161 fi
162 rm -f tmp1.txt tmp2.txt tmp3.txt tmp4.txt
163
164 return $digits_of_similarity
165 }
166
167 dashnum()
168 {
169 # dashnum n1 n2 n3 ...
170 #
171 # print numbers using %3i format or "--" if number = 99
172
173 for num in $@ ; do
174 if [ $num = 99 ]; then
175 printf ' --'
176 else
177 printf '%3i' $num
178 fi
179 done
180 }
181
182 testoutput_ad()
183 {
184 grep $3 $1/results_ad/output_adm.txt | awk '{print NR " " $5}' > t05.txt
185 grep $3 $1/$2/output_adm.txt | awk '{print NR " " $5}' > t15.txt
186 grep $3 $1/results_ad/output_adm.txt | awk '{print NR " " $6}' > t06.txt
187 grep $3 $1/$2/output_adm.txt | awk '{print NR " " $6}' > t16.txt
188 join t05.txt t15.txt > t5.txt
189 join t06.txt t16.txt > t6.txt
190 echo "-1" >> t5.txt
191 echo "-1" >> t6.txt
192 digits_5=`./tmp_cmpnum < t5.txt`
193 digits_6=`./tmp_cmpnum < t6.txt`
194 dashnum $digits_5 $digits_6
195 rm -f t[01][56].txt t[56].txt
196 }
197
198 check_for_add_mon_output()
199 {
200 # Check for additional types of monitor output
201 if test "x$1" = x ; then
202 return
203 fi
204
205 for ii in $PTRACERS_NUM ; do
206 eval "HAVE_PTR0"$ii"=f"
207 done
208
209 ptr_add="trcstat_ptracerXX_min trcstat_ptracerXX_max"
210 ptr_add="$ptr_add trcstat_ptracerXX_mean trcstat_ptracerXX_sd"
211 for ii in $PTRACERS_NUM ; do
212 for jj in $ptr_add ; do
213 name=`eval "echo $jj | sed -e 's|XX|0"$ii"|g'"`
214 tst=`grep $name $1 | wc -l | awk '{print $1}'`
215 if test ! "x$tst" = x0 ; then
216 eval "HAVE_PTR0"$ii"=t"
217 fi
218 done
219 # eval 'echo "HAVE_PTR0'$ii' = $HAVE_PTR0'$ii'"'
220 done
221 }
222
223 testoutput()
224 {
225 # testoutput directory subdir extension
226 #
227 # test output in "directory"
228 if test "x$ADM" = x ; then
229 if [ $debug -gt 0 ]; then
230 echo testoutput: testoutput_for_prop $1 cg2d_init_res 1>&2
231 fi
232 testoutput_for_prop $1 "cg2d_init_res" "cg2d init. residual" $2 $3; cg2dres=$?
233 if [ $debug -gt 0 ]; then
234 echo testoutput: cg2dres=$cg2dres 1>&2
235 fi
236 testoutput_for_prop $1 "dynstat_theta_min" "theta minimum" $2 $3; tmin=$?
237 testoutput_for_prop $1 "dynstat_theta_max" "theta maximum" $2 $3; tmax=$?
238 testoutput_for_prop $1 "dynstat_theta_mean" "theta mean" $2 $3; tmean=$?
239 testoutput_for_prop $1 "dynstat_theta_sd" "theta s.d." $2 $3; tsd=$?
240 testoutput_for_prop $1 "dynstat_salt_min" "salt minimum" $2 $3; smin=$?
241 testoutput_for_prop $1 "dynstat_salt_max" "salt maximum" $2 $3; smax=$?
242 testoutput_for_prop $1 "dynstat_salt_mean" "salt mean" $2 $3; smean=$?
243 testoutput_for_prop $1 "dynstat_salt_sd" "salt s.d." $2 $3; ssd=$?
244 testoutput_for_prop $1 "dynstat_uvel_min" "U minimum" $2 $3; umin=$?
245 testoutput_for_prop $1 "dynstat_uvel_max" "U maximum" $2 $3; umax=$?
246 testoutput_for_prop $1 "dynstat_uvel_mean" "U mean" $2 $3; umean=$?
247 testoutput_for_prop $1 "dynstat_uvel_sd" "U s.d." $2 $3; usd=$?
248 testoutput_for_prop $1 "dynstat_vvel_min" "V minimum" $2 $3; vmin=$?
249 testoutput_for_prop $1 "dynstat_vvel_max" "V maximum" $2 $3; vmax=$?
250 testoutput_for_prop $1 "dynstat_vvel_mean" "V mean" $2 $3; vmean=$?
251 testoutput_for_prop $1 "dynstat_vvel_sd" "V s.d." $2 $3; vsd=$?
252
253 # This is for PTRACERS
254 for ii in $PTRACERS_NUM ; do
255 eval `echo "p0"$ii"_min=99"`
256 eval `echo "p0"$ii"_max=99"`
257 eval `echo "p0"$ii"_mean=99"`
258 eval `echo "p0"$ii"_sd=99"`
259 tst=`eval 'echo "$HAVE_PTR0'$ii'"'`
260 #echo 'tst = '$tst
261 if test "x$tst" = xt ; then
262 a="trcstat_ptracer0"
263 testoutput_for_prop $1 "$a"$ii"_min" "p0"$ii"_min" $2 $3
264 RETVAL=$? ; eval `echo "p0"$ii"_min="$RETVAL`
265 testoutput_for_prop $1 "$a"$ii"_max" "p0"$ii"_max" $2 $3
266 RETVAL=$? ; eval `echo "p0"$ii"_max="$RETVAL`
267 testoutput_for_prop $1 "$a"$ii"_mean" "p0"$ii"_mean" $2 $3
268 RETVAL=$? ; eval `echo "p0"$ii"_mean="$RETVAL`
269 testoutput_for_prop $1 "$a"$ii"_sd" "p0"$ii"_sd" $2 $3
270 RETVAL=$? ; eval `echo "p0"$ii"_sd="$RETVAL`
271 fi
272 done
273
274 allargs="$cg2dres $tmin $tmax $tmean $tsd $smin $smax $smean $ssd"
275 allargs="$allargs $umin $umax $umean $usd $vmin $vmax $vmean $vsd"
276 allargs="$allargs $p01_min $p01_max $p01_mean $p01_sd"
277 allargs="$allargs $p02_min $p02_max $p02_mean $p02_sd"
278 allargs="$allargs $p03_min $p03_max $p03_mean $p03_sd"
279 allargs="$allargs $p04_min $p04_max $p04_mean $p04_sd"
280 allargs="$allargs $p05_min $p05_max $p05_mean $p05_sd"
281
282 eval "dashnum $allargs"
283
284 else
285 testoutput_ad $1 $2 "precision_grdchk_result"
286 fi
287 }
288
289 genmakemodel()
290 {
291 # genmakemodel directory
292 if test "x$NOGENMAKE" = xt ; then
293 echo "genmake skipped!"
294 else
295 if test "x$BASH" = x ; then
296 GENMAKE2="../../../tools/genmake2"
297 else
298 GENMAKE2="$BASH ../../../tools/genmake2 -bash $BASH"
299 fi
300 (
301 cd $1;
302 command="$GENMAKE2 -ds -m $MAKE"
303 if test "x$ADM" = x ; then
304 command="$command --mods=../code"
305 else
306 command="$command --mods=../code_ad"
307 fi
308 if test "x$OPTFILE" != xNONE ; then
309 command="$command --optfile=$OPTFILE"
310 fi
311 if test "x$IEEE" != x ; then
312 command="$command -ieee"
313 fi
314 if test "x$MPI" = xt ; then
315 command="$command -mpi"
316 fi
317 printf 'genmake ... ' 1>&2
318 $command > make.log 2>&1
319 RETVAL=$?
320 # Reduce the size of the testing emails!
321 head -100 Makefile > $CDIR/Makefile_head
322 if test "x$RETVAL" != x0 ; then
323 tail make.log
324 echo "genmakemodel: genmake failed" 1>&2
325 cp genmake_* make.log $CDIR
326 return 1
327 else
328 echo "successful" 1>&2
329 fi
330 )
331 fi
332 }
333
334 makeclean()
335 {
336 # makeclean directory
337 if test "x$NOCLEAN" = xt ; then
338 echo "make CLEAN skipped!"
339 else
340 (
341 cd $1;
342 if test -e output.txt ; then
343 rm -f output.txt
344 fi
345 printf 'make CLEAN ... ' 2>&1
346 if test -r Makefile ; then
347 $MAKE CLEAN >> make.log 2>&1
348 RETVAL=$?
349 if test "x$RETVAL" != x0 ; then
350 tail make.log
351 echo "makeclean: \"make CLEAN\" failed" 1>&2
352 cp make.log $CDIR"/make.log"
353 return 1
354 fi
355 fi
356 echo successful 1>&2
357 exit 0
358 )
359 fi
360 }
361
362 postclean()
363 {
364 # postclean directory
365 if test "x$POSTCLEAN" = xt ; then
366 (
367 cd $1;
368 if test -r Makefile ; then
369 $MAKE CLEAN >> /dev/null 2>&1
370 fi
371 exit 0
372 )
373 fi
374 }
375
376 makedependmodel()
377 {
378 # makedependmodel directory
379 if test "x$NODEPEND" = xt ; then
380 echo "make depend skipped!"
381 else
382 (
383 cd $1;
384 printf 'make depend ... ' 1>&2
385 $MAKE depend >> make.log 2>&1
386 RETVAL=$?
387 if test "x$RETVAL" != x0 ; then
388 tail make.log
389 echo "makedependmodel: make depend failed" 1>&2
390 cp make.log $CDIR"/make.log"
391 return 1
392 else
393 echo successful 1>&2
394 fi
395 )
396 fi
397 }
398
399 makemodel()
400 {
401 # makemodel directory
402 (
403 cd $1;
404 if test -r Makefile ; then
405 printf 'make ... ' 1>&2
406 if test "x$ADM" = x ; then
407 if test "x$JOBS" = x ; then
408 $MAKE >> make.log 2>&1
409 else
410 $MAKE -j $JOBS >> make.log 2>&1
411 fi
412 else
413 $MAKE adall >> make.log 2>&1
414 fi
415 RETVAL=$?
416 if test "x$RETVAL" != x0 ; then
417 tail make.log
418 echo failed 1>&2
419 cp make.log $CDIR"/make.log"
420 return 1
421 else
422 echo successful 1>&2
423 fi
424 fi
425 )
426 }
427
428 symlink_mpifiles()
429 {
430 # Put special links so that MPI specific files are used
431 # This MUST be invoked between makeclean and makelinks because
432 # the Makefile will link to non-mpi files by default
433
434 dir=$1
435 code_dir=$2
436 BUILD_DIR=$dir/$3
437 CODE_DIR=$dir/$code_dir
438
439 # These are files that should replace their counter-part when using -mpi
440 MPI_FILES=`(cd $CODE_DIR; find . -name "*_mpi")`
441
442 # Is this an MPI run?
443 if test "x$MPI" = xt ; then
444 # YES: We symbolically link these files to the build
445 # dir so long as there is no real file in place
446 for ii in $MPI_FILES ; do
447 i=`echo $ii | sed 's:^\./::'`
448 name=`echo $i | sed 's:_mpi::' `
449 cmp $CODE_DIR/$i $BUILD_DIR/$name > /dev/null 2>&1
450 RETVAL=$?
451 if test "x$RETVAL" != x0 ; then
452 if ! test -f $BUILD_DIR/$i ; then
453 #echo Linking $name to $i
454 (cd $BUILD_DIR; ln -sf ../$code_dir/$i $name)
455 fi
456 fi
457 done
458 else
459 # NO: We undo any _mpi symbolically linked files
460 for ii in $MPI_FILES ; do
461 i=`echo $ii | sed 's:^\./::'`
462 name=`echo $i | sed 's:_mpi::' `
463 if test -L $BUILD_DIR/$name ; then
464 cmp $BUILD_DIR/$name "../$code_dir/$name"_mpi > /dev/null 2>&1
465 RETVAL=$?
466 if test "x$RETVAL" = x0 ; then
467 #echo Un-linking $name from $linktarg
468 rm -f $BUILD_DIR/$name
469 fi
470 fi
471 done
472 fi
473
474 }
475
476 linkdata()
477 {
478 # linkdata flag
479 #
480 # symbolically link data files to run directory
481 if test "x$1" = x1 ; then
482 (
483 cd $2
484 if test "x$ADM" = x ; then
485 files=`( cd ../input ; ls -1 | grep -v CVS )`
486 for i in $files ; do
487 if test ! -d "../input/"$i -a ! -f $i ; then
488 ln -sf "../input/"$i $i
489 fi
490 done
491 else
492 files=`( cd ../input ; ls -1 *.bin | grep -v CVS )`
493 for i in $files ; do
494 if test ! -d "../input/"$i ; then
495 ln -sf "../input/"$i $i
496 fi
497 done
498 files=`( cd ../input_ad ; ls -1 | grep -v CVS )`
499 for i in $files ; do
500 if test ! -d "../input_ad/"$i ; then
501 ln -sf "../input_ad/"$i $i
502 fi
503 done
504 fi
505 )
506 fi
507 }
508
509 runmodel()
510 {
511 # runmodel directory
512 #
513 # runs "$COMMAND in "directory"
514 # (where "$COMMAND" is relative to "directory")
515 (
516 cd $1
517 printf 'runmodel in %s ...' $1 1>&2
518 # make output.txt
519 echo
520 rm -f run.log
521 if test $OUTPUTFILE -ot $EXECUTABLE ; then
522 ( eval $COMMAND ) > run.log 2>&1
523 RETVAL=$?
524 else
525 echo " $OUTPUTFILE is up to date " > run.log 2>&1
526 RETVAL=0
527 fi
528 # echo "COMMAND='$COMMAND'"
529 # echo "pwd='"`pwd`"'"
530 if test "x$RETVAL" = x0 ; then
531 tail run.log
532 echo successful 1>&2
533 # === Reduce the size of the testing emails!
534 # if test "x$ADM" = x ; then
535 # cp output.txt $CDIR"/output.txt"
536 # else
537 # cp output_adm.txt $CDIR"/output_adm.txt"
538 # fi
539 if test -s STDERR.0000 ; then cp STDERR.0000 $CDIR"/STDERR.0000" ; fi
540 return 0
541 else
542 tail run.log
543 echo failed 1>&2
544 cp run.log $CDIR"/run.log"
545 if test -s STDERR.0000 ; then cp STDERR.0000 $CDIR"/STDERR.0000" ; fi
546 return 1
547 fi
548 )
549 }
550
551 createcodelet()
552 {
553 # create codelet for comparing model output
554
555 printf "creating the comparison code... "
556 cat > tmp_cmpnum.c <<EOF
557 #include <stdio.h>
558 #include <math.h>
559 int main( int argc, char** argv ) {
560 int linnum,best,lncnt;
561 double a,b,abave,relerr;
562 best = -22;
563 lncnt = 0;
564 while( 1 & (lncnt+=1) < 999 ) {
565 scanf("%d", &linnum);
566 if (linnum == -1) break;
567 scanf("%lf", &a); scanf("%lf", &b);
568 abave = 0.5*(fabs(a)+fabs(b));
569 if (abave > 0.0) {
570 relerr=fabs(a-b)/abave;
571 if (relerr > 0.0) { linnum = (int)rint(log10(relerr)); }
572 else { linnum = -16 ; }
573 best = (best > linnum) ? best : linnum;
574 }
575 }
576 if (lncnt == 999) best=-29;
577 printf("%d\n", -best);
578 return 0;
579 }
580 EOF
581 $CC -o tmp_cmpnum tmp_cmpnum.c -lm
582
583 if [ -x ./tmp_cmpnum ]; then
584 echo "OK"
585 return 0
586 else
587 echo
588 echo "ERROR: failed to compile comparison code -- please specify"
589 echo " a C compiler using the CC environment variable."
590 exit 1
591 fi
592 }
593
594 formatresults()
595 {
596 # formatresults expt genmake depend make run results*
597
598 nm=$1
599 printf '%s %s %s %s' $2 $3 $4 $5
600 shift; shift; shift; shift; shift;
601 printf '%3s' $@
602
603 if [ $1 = '--' ]; then
604 printf ' N/O '
605 else
606 if [ $1 -gt 12 ]; then
607 printf ' pass'
608 else
609 printf ' FAIL'
610 fi
611 fi
612 printf ' %s' $nm
613 printf '\n'
614
615 }
616
617 show_help()
618 {
619 cat - << EOF
620 $0 [-help] [-quick] [-verbose] dir1 [dir2] [...]
621
622 -help|-h Show this help message
623 -quiet Reduce the amount of output
624 -verbose Produce copious amounts of output
625 -debug Produce even more output which will mean nothing to most
626 -force Do "make CLEAN" before compiling. This forces a complete rebuild.
627 -clean Do "make CLEAN" after compiling and testing.
628 -cleanup Aggresively removes all model output, executables and object files
629 and then exits. Use with care.
630
631 Normal usage:
632 $0 * Configure, compile, run and analyze in all experiment directories
633 EOF
634 }
635
636 scandirs()
637 {
638 if [ $# -eq 0 ]; then
639 for arg in * ; do
640 test -d $arg/input && echo $arg
641 done
642 else
643 echo $*
644 fi
645 }
646
647
648 ###############################################################################
649
650
651 # Default properties
652 debug=0
653 verbose=1
654 clean=0
655 expts=''
656 # ieee=1
657
658 IEEE=true
659 if test "x$MITGCM_IEEE" != x ; then
660 IEEE=$MITGCM_IEEE
661 fi
662
663
664 CLEANUP=f
665 QUICK=f
666 NOGENMAKE=f
667 NOCLEAN=f
668 NODEPEND=f
669 POSTCLEAN=f
670
671 BASH=
672 OPTFILE=NONE
673 ADDRESSES=
674 TESTDIRS=
675 MPACKDIR="../tools/mpack-1.6"
676 HAVE_MPACK=
677 MPACK="$MPACKDIR/mpack"
678 COMMAND=
679 if test "x$MAKE" = x ; then
680 MAKE=make
681 fi
682 if test "x$CC" = x ; then
683 CC=cc
684 fi
685 JOBS=
686 MPI=f
687 OUTDIR=
688 DELDIR=
689
690 ADM=
691
692 # Additional monitor types
693 PTRACERS_NUM="1 2 3 4 5"
694
695 printf "parsing options... "
696
697 ac_prev=
698 for ac_option ; do
699
700 # If the previous option needs an argument, assign it.
701 if test -n "$ac_prev"; then
702 eval "$ac_prev=\$ac_option"
703 ac_prev=
704 continue
705 fi
706
707 ac_optarg=`expr "x$ac_option" : 'x[^=]*=\(.*\)'`
708
709 case $ac_option in
710
711 -help | --help | -h | --h)
712 usage ;;
713
714 -optfile | --optfile | -of | --of)
715 ac_prev=OPTFILE ;;
716 -optfile=* | --optfile=* | -of=* | --of=*)
717 OPTFILE=$ac_optarg ;;
718
719 -addr | --addr | -a | --a)
720 ac_prev=ADDRESSES ;;
721 -addr=* | --addr=*)
722 ADDRESSES=$ac_optarg ;;
723
724 -tdir | --tdir | -t | --t)
725 ac_prev=TESTDIRS ;;
726 -tdir=* | --tdir=*)
727 TESTDIRS=$ac_optarg ;;
728
729 -bash | --bash | -b | --b)
730 ac_prev=BASH ;;
731 -bash=* | --bash=*)
732 BASH=$ac_optarg ;;
733
734 -command | --command | -c | --c)
735 ac_prev=COMMAND ;;
736 -command=* | --command=*)
737 COMMAND=$ac_optarg ;;
738
739 -make | --make | -m | --m)
740 ac_prev=MAKE ;;
741 -make=* | --make=*)
742 MAKE=$ac_optarg ;;
743
744 -odir | --odir)
745 ac_prev=OUTDIR ;;
746 -odir=* | --odir=*)
747 OUTDIR=$ac_optarg ;;
748
749 -ptracers | --ptracers | -ptr | --ptr)
750 ac_prev=PTRACERS_NUM ;;
751 -ptracers=* | --ptracers=* | -ptr=* | --ptr=*)
752 PTRACERS_NUM=$ac_optarg ;;
753
754 -j) ac_prev=JOBS ;;
755 -j=*) JOBS=$ac_optarg ;;
756
757 -clean | --clean)
758 CLEANUP=t ; DELDIR=t ;;
759
760 -quick | --quick | -q | --q)
761 QUICK=t ;;
762 -nogenmake | --nogenmake | -ng | --ng)
763 NOGENMAKE=t ;;
764 -noclean | --noclean | -nc | --nc)
765 NOCLEAN=t ;;
766 -nodepend | --nodepend | -nd | --nd)
767 NODEPEND=t ;;
768
769 -postclean | --postclean | -pc | --pc)
770 POSTCLEAN=t ;;
771
772 -mpi) MPI=t ;;
773
774 -adm | -ad) ADM=t ;;
775
776 -ieee) IEEE=true ;;
777 -noieee) IEEE= ;;
778
779 -verbose) verbose=2 ;;
780 -debug) debug=1 ;;
781 -quiet) verbose=0 ;;
782
783 -deldir | -dd) DELDIR=t ;;
784
785 -*)
786 echo "Error: unrecognized option: "$ac_option
787 usage
788 ;;
789
790 *)
791 echo "Error: unrecognized argument: "$ac_option
792 usage
793 ;;
794
795 esac
796
797 done
798
799 if test "x$QUICK" = xt ; then
800 NOGENMAKE=t
801 NOCLEAN=t
802 NODEPEND=t
803 fi
804
805 if test "x$TESTDIRS" = x ; then
806 TESTDIRS=`scandirs`
807 fi
808
809 if test "x$OPTFILE" = xNONE -a "x$MITGCM_OF" != x ; then
810 OPTFILE=$MITGCM_OF
811 fi
812
813 if test "x$ADM" = xt ; then
814 EXECUTABLE="mitgcmuv_ad"
815 OUTPUTFILE="output_adm.txt"
816 else
817 EXECUTABLE="mitgcmuv"
818 OUTPUTFILE="output.txt"
819 fi
820
821 if test "x$ADM" = xt -a "x$COMMAND" = x ; then
822 COMMAND="./$EXECUTABLE > $OUTPUTFILE"
823 fi
824
825 if test "x$COMMAND" = x ; then
826 COMMAND="./$EXECUTABLE > $OUTPUTFILE"
827 fi
828
829 #echo "OK"
830 echo "OK (COMMAND= $COMMAND )"
831
832 # create the FORTRAN comparison code
833 createcodelet
834
835 # build the mpack utility
836 if test "x$ADDRESSES" = xNONE -o "x$ADDRESSES" = x ; then
837 echo "skipping mpack build"
838 else
839 build_mpack
840 fi
841
842 # Create a uniquely named directory to store results
843 MACH=`hostname`
844 UNAMEA=`uname -a`
845 DATE=`date +%Y%m%d`
846 BASE="tr_"$MACH"_"$DATE"_"
847 if test "x$OUTDIR" != x ; then
848 BASE="tr_"$OUTDIR"_"$DATE"_"
849 fi
850 DNUM=0
851 DRESULTS="$BASE$DNUM"
852 while test -e $DRESULTS ; do
853 DNUM=$(( $DNUM + 1 ))
854 DRESULTS="$BASE$DNUM"
855 done
856 mkdir $DRESULTS
857 RETVAL=$?
858 if test "x$RETVAL" != x0 ; then
859 echo "ERROR: Can't create results directory \"./$DRESULTS\""
860 exit 1
861 fi
862 SUMMARY="$DRESULTS/summary.txt"
863 printf "Start time: " >> $SUMMARY
864 start_date=`date`
865 echo $start_date > $SUMMARY
866
867 of_path=
868 if test "x$OPTFILE" != xNONE ; then
869 if test -r $OPTFILE ; then
870 # get the path
871 path=${OPTFILE%/*}
872 if test "x$path" = x ; then
873 of_path=`pwd`
874 else
875 of_path=`( cd $path > /dev/null 2>&1 ; pwd )`
876 fi
877 file=${OPTFILE##*/}
878 OPTFILE=$of_path/$file
879 cp $OPTFILE $DRESULTS
880 echo >> $SUMMARY
881 echo " OPTFILE=$OPTFILE" >> $SUMMARY
882 else
883 echo | tee $SUMMARY
884 echo "ERROR: can't read OPTFILE=\"$OPTFILE\"" | tee $SUMMARY
885 exit 1
886 fi
887 else
888 echo >> $SUMMARY
889 echo "No \"OPTFILE\" was explicitly specified by testreport," >> $SUMMARY
890 echo " so the genmake default will be used." >> $SUMMARY
891 fi
892 echo
893 echo >> $SUMMARY
894 if test "x$ADM" = x ; then
895 line_0=" ----T----- ----S----- ----U----- ----V-----"
896 line_1="G D M c m s m s m s m s"
897 line_2="E p a R g m m e . m m e . m m e . m m e ."
898 line_3="N n k u 2 i a a d i a a d i a a d i a a d"
899 line_4="2 d e n d n x n . n x n . n x n . n x n ."
900 for ii in $PTRACERS_NUM ; do
901 # tst=`eval 'echo $HAVE_PTR0'$ii`
902 # if test "x$tst" = xt ; then
903 line_0="$line_0 --PTR 0"$ii"--"
904 line_1="$line_1 m s"
905 line_2="$line_2 m m e ."
906 line_3="$line_3 i a a d"
907 line_4="$line_4 n x n ."
908 # fi
909 done
910 echo "$line_0" | tee -a $SUMMARY
911 echo "$line_1" | tee -a $SUMMARY
912 echo "$line_2" | tee -a $SUMMARY
913 echo "$line_3" | tee -a $SUMMARY
914 echo "$line_4" | tee -a $SUMMARY
915 echo " " | tee -a $SUMMARY
916 else
917 echo "ADJOINT=true" >> $SUMMARY
918 echo >> $SUMMARY
919 cat << EOF | tee -a $SUMMARY
920 G D M C G
921 E p a R o r
922 N n k u s a
923 2 d e n t d
924
925 EOF
926 fi
927
928 # ...and each test directory...
929 for dir in $TESTDIRS ; do
930
931 # Cleanup only!
932 if test "x$CLEANUP" = xt ; then
933 if test -r $dir/build/Makefile ; then
934 ( cd $dir/build ; make CLEAN )
935 fi
936 if test -r $dir/input/Makefile ; then
937 ( cd $dir/input ; make CLEAN )
938 fi
939 (
940 cd $dir
941 rm -rf tr_run.*
942 )
943 continue
944 fi
945
946 # Verify that the testdir exists and contains previous
947 # results in the correct location--or skip this directory!
948 fout=
949 if test "x$ADM" = x ; then
950 fout=$dir"/results/output.txt"
951 else
952 fout=$dir"/results_ad/output_adm.txt"
953 fi
954 if test ! -r $fout ; then
955 echo "can't read \"$fout\" -- skipping $dir"
956 continue
957 fi
958 if test "x$ADM" = x ; then
959 check_for_add_mon_output $fout
960 fi
961
962 # Check for additional types of monitor output
963
964 builddir="input"
965 rundir="input"
966 use_seperate_build=0
967 if test -d $dir/build -a -r $dir/build ; then
968 builddir="build"
969 rundir="build"
970 use_seperate_build=1
971 linkdata $use_seperate_build $dir/$rundir
972 fi
973
974 # Check whether there are "extra runs" for this testdir
975 extra_runs=
976 if test "x$ADM" = x -a "x$use_seperate_build" = x1 ; then
977 ex_run_dirs=`( cd $dir ; echo input.* )`
978 echo "ex_run_dirs='$ex_run_dirs'"
979 for exd in $ex_run_dirs ; do
980 name=`echo $exd | sed -e 's/input.//g'`
981 outf="$dir/results/output.txt.$name"
982 if test -f $outf -a -r $outf ; then
983 extra_runs="$extra_runs $name"
984 fi
985 done
986 fi
987
988 if test "x$ADM" = x ; then
989 code_dir=code
990 CODE_DIR=$dir/code
991 else
992 code_dir=code_ad
993 CODE_DIR=$dir/code_ad
994 fi
995 BUILD_DIR=$dir/$builddir
996
997 if test ! -r $CODE_DIR"/SIZE.h_mpi" -a "x$MPI" = "xt" ; then
998 echo "can't find \"$CODE_DIR/SIZE.h_mpi\" -- skipping $dir"
999 continue
1000 fi
1001
1002 echo "-------------------------------------------------------------------------------"
1003 echo
1004 echo "Experiment: $dir"
1005 echo
1006 unset genmake makedepend make run
1007 results='-- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- --'
1008
1009 # Create an output dir for each OPTFILE/tdir combination
1010 rel_CDIR=$DRESULTS"/"$dir
1011 mkdir $rel_CDIR
1012 CDIR=`pwd`"/$rel_CDIR"
1013
1014 if test "x$CLEANUP" = xt ; then
1015 makeclean $dir/$builddir
1016 else
1017 genmakemodel $dir/$builddir && genmake=Y \
1018 && makeclean $dir/$builddir \
1019 && symlink_mpifiles $dir $code_dir $builddir \
1020 && makedependmodel $dir/$builddir && makedepend=Y \
1021 && makemodel $dir/$builddir && make=Y \
1022 && linkdata $use_seperate_build $dir/$rundir \
1023 && runmodel $dir/$rundir && run=Y \
1024 && results=`testoutput $dir $rundir`
1025 fi
1026
1027 echo
1028 if test "x$ADM" = x ; then
1029 fres=`formatresults $dir ${genmake:-N} ${makedepend:-N} ${make:-N} ${run:-N} $results`
1030 echo
1031 echo "$fres" >> $SUMMARY
1032 echo "fresults='$fres'" > $CDIR"/summary.txt"
1033 echo "MACH='$MACH'" >> $CDIR"/summary.txt"
1034 echo "UNAMEA='$UNAMEA'" >> $CDIR"/summary.txt"
1035 echo "DATE='$DATE'" >> $CDIR"/summary.txt"
1036 echo "tdir='$dir'" >> $CDIR"/summary.txt"
1037
1038 for ex in $extra_runs ; do
1039 unset run
1040 results='-- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- --'
1041 # Create an output dir for each OPTFILE/tdir.ex combination
1042 rel_CDIR=$DRESULTS"/"$dir"."$ex
1043 mkdir $rel_CDIR
1044 CDIR=`pwd`"/$rel_CDIR"
1045 test ! -e "$dir/tr_run.$ex" && mkdir "$dir/tr_run.$ex"
1046 for ldir in input.$ex input ; do
1047 (
1048 cd "$dir/$ldir" > /dev/null 2>&1
1049 ls -1 2>/dev/null \
1050 | sed -e 's|^CVS$||g' | sed -e 's|^output.txt$||g'
1051 ) > tr_exrun_links
1052 (
1053 cd "$dir/tr_run.$ex"
1054 cat ../../tr_exrun_links | while read i ; do
1055 if test ! "x$i" = x ; then
1056 test ! -r $i && ln -s "../"$ldir"/"$i $i
1057 fi
1058 done
1059 )
1060 test -e tr_exrun_links && rm -f tr_exrun_links
1061 done
1062 ldir=build
1063 (
1064 cd $dir/tr_run.$ex
1065 test ! -e mitgcmuv && ln -s "../"$ldir"/"mitgcmuv .
1066 )
1067 runmodel $dir/tr_run.$ex && run=Y \
1068 && results=`testoutput $dir tr_run.$ex "."$ex`
1069 fres=`printf '%s %s %s %s' ${genmake:-N} ${makedepend:-N} ${make:-N} ${run:-N}`
1070 fres=`formatresults $dir ${genmake:-N} ${makedepend:-N} ${make:-N} ${run:-N} $results`
1071 fres="$fres.$ex"
1072 echo
1073 echo "$fres" >> $SUMMARY
1074 echo "fresults='$fres'" > $CDIR"/summary.txt"
1075 echo "MACH='$MACH'" >> $CDIR"/summary.txt"
1076 echo "UNAMEA='$UNAMEA'" >> $CDIR"/summary.txt"
1077 echo "DATE='$DATE'" >> $CDIR"/summary.txt"
1078 echo "tdir='$dir.$ex'" >> $CDIR"/summary.txt"
1079 done
1080 else
1081 fres=`printf '%s %s %s %s' ${genmake:-N} ${makedepend:-N} ${make:-N} ${run:-N}`
1082 fres=$fres"$results $dir"
1083 echo
1084 echo "$fres" >> $SUMMARY
1085 echo "fresults='$fres'" > $CDIR"/summary.txt"
1086 echo "MACH='$MACH'" >> $CDIR"/summary.txt"
1087 echo "UNAMEA='$UNAMEA'" >> $CDIR"/summary.txt"
1088 echo "DATE='$DATE'" >> $CDIR"/summary.txt"
1089 echo "tdir='$dir'" >> $CDIR"/summary.txt"
1090 grep -A3 'Seconds in section "ALL' $dir/$rundir/$OUTPUTFILE \
1091 >> $CDIR"/summary.txt"
1092 fi
1093
1094 postclean $dir/$builddir
1095
1096 echo "-------------------------------------------------------------------------------"
1097
1098 done
1099
1100 printf "Start time: " >> $SUMMARY
1101 echo $start_date >> $SUMMARY
1102 printf "End time: " >> $SUMMARY
1103 date >> $SUMMARY
1104
1105 # If addresses were supplied and mpack built successfully, then try
1106 # to send email using mpack.
1107 if test "x$ADDRESSES" = xNONE -o "x$ADDRESSES" = x ; then
1108 echo "No results email was sent."
1109 else
1110 if test "x$HAVE_MPACK" = xt ; then
1111 tar -cf $DRESULTS".tar" $DRESULTS > /dev/null 2>&1 \
1112 && gzip $DRESULTS".tar" \
1113 && $MPACK -s MITgcm-test -m 3555000 $DRESULTS".tar.gz" $ADDRESSES
1114 RETVAL=$?
1115 if test "x$RETVAL" != x0 ; then
1116 echo
1117 echo "Warning: The tar, gzip, & mpack step failed. Please send email"
1118 echo " to <MITgcm-support@mitgcm.org> for help. You may copy the "
1119 echo " summary of results from the directory \"$DRESULTS\"."
1120 echo
1121 else
1122 echo
1123 echo "An email containing results was sent to the following addresses:"
1124 echo " \"$ADDRESSES\""
1125 echo
1126 fi
1127 test -f $DRESULTS".tar" && rm -f $DRESULTS".tar"
1128 test -f $DRESULTS".tar.gz" && rm -f $DRESULTS".tar.gz"
1129 fi
1130 fi
1131
1132 # rm -f tmp_cmpnum.f a.out
1133 rm -f tmp_cmpnum.c tmp_cmpnum
1134
1135 if test "x$CLEANUP" != xt ; then
1136 cat $SUMMARY | sed 's/ -- -- -- --//g'
1137 if test -e tr_out.txt ; then
1138 mv tr_out.txt tr_out.txt.old
1139 fi
1140 cat $SUMMARY | sed 's/ -- -- -- --//g' > tr_out.txt
1141 fi
1142
1143 if test "x$DELDIR" = xt ; then
1144 rm -rf $DRESULTS
1145 fi

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