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Revision 1.168 - (show annotations) (download)
Fri Sep 30 20:25:50 2011 UTC (12 years, 6 months ago) by jmc
Branch: MAIN
Changes since 1.167: +5 -12 lines
fix "-obj" option with "-adm"

1 #! /usr/bin/env bash
2 #
3 # $Header: /u/gcmpack/MITgcm/verification/testreport,v 1.167 2011/09/26 12:58:48 jmc Exp $
4 # $Name: $
5 #
6
7 usage()
8 {
9 echo
10 echo "Usage: $0 [OPTIONS]"
11 echo
12 echo "where possible OPTIONS are:"
13 echo " (-help|-h) print usage"
14 echo " (-mth) run multi-threaded (using eedata.mth)"
15 echo " (-mpi) use MPI to compile and run on 2 processors"
16 echo " (-MPI) NUMBER use MPI to compile and run on max NUMBER procs"
17 echo " (-mfile|-mf) STRING MPI: file with list of possible machines to run on"
18 echo " (-fast) use optfile default for compiler flags (no '-ieee')"
19 echo " DEF=off => use IEEE numerics option (if available)"
20 echo " (-devel) use optfile developement flags (if available)"
21 echo " (-gsl) compile with \"-gsl\" flag"
22 echo " (-use_r4|-ur4) if allowed, use real*4 type for '_RS' variable"
23 echo " (-optfile|-of) STRING list of optfiles to use"
24 echo " (-addr|-a) STRING list of email recipients"
25 echo " (DEF=\"\" no email is sent)"
26 echo " (-mpackdir|-mpd) DIR location of the mpack utility"
27 echo " (DEF=\"../tools/mpack-1.6\")"
28 echo " (-tdir|-t) STRING list of group and/or exp. dirs to test"
29 echo " (recognized groups: basic, tutorials)"
30 echo " (DEF=\"\" which test all)"
31 echo " (if list= 'start_from THIS_EXP' then"
32 echo " test THIS_EXP + all the following)"
33 echo " (-skipdir|-skd) STRING list of exp. dirs to skip"
34 echo " (DEF=\"\" which test all)"
35 echo " (-bash|-b) STRING preferred location of a \"bash\" or"
36 echo " Bourne-compatible \"sh\" shell"
37 echo " (DEF=\"\" for \"bash\")"
38 echo " (-adm|-ad) perform an adjoint run"
39 echo " (-oad) perform an OpenAD adjoint run"
40 echo " (-command|-c) STRING command to run"
41 echo " (-makedepend|-md) STRING command to use for \"makedepend\""
42 echo " (-make|-m) STRING command to use for \"make\""
43 echo " (DEF=\"make\")"
44 echo " (-odir) STRING used to build output directory name"
45 echo " (DEF=\"hostname\")"
46 # echo " (-ptracers|-ptr) STRING specify which ptracers to test"
47 # echo " (DEF=\"1 2 3 4 5\")"
48 echo " (-match) NUMBER Matching Criteria (number of digits)"
49 echo " (DEF=\"$MATCH_CRIT\")"
50 echo " (-j) JOBS use \"make -j JOBS\" for parallel builds"
51 echo " (-ef) STRING used as genmake2 \"-extra_flag\" argument"
52 echo " (-clean) *ONLY* run \"make CLEAN\" & clean run-dir"
53 echo " (-norun|-nr) skip the \"runmodel\" stage (stop after make)"
54 echo " (-obj) only produces objects (=norun & no executable)"
55 echo " (-runonly|-ro) *ONLY* run stage (=\"-quick\" without make)"
56 echo " (-quick|-q) same as \"-nogenmake -noclean -nodepend\""
57 echo " (-nogenmake|-ng) skip the genmake stage"
58 echo " (-noclean|-nc) skip the \"make clean\" stage"
59 echo " (-nodepend|-nd) skip the \"make depend\" stage"
60 echo " (-postclean|-pc) after each exp. test, clean build-dir & run-dir"
61 echo " (-deloutp|-do) delete output files after successful run"
62 echo " (-deldir|-dd) on success, delete the output directory"
63 echo " (-ts) provide timing information per timestep"
64 echo " (-papis) provide MFlop/s per timestep using PAPI"
65 echo " (-pcls) provide MFlop/s per timestep using PCL"
66 echo
67 echo "and where STRING can be a whitespace-delimited list"
68 echo "such as:"
69 echo
70 echo " -t 'exp0 exp2 exp3' "
71 echo " -addr='abc@123.com testing@home.org'"
72 echo
73 echo "provided that the expression is properly quoted within the current"
74 echo "shell (note the use of single quotes to protect white space)."
75 echo
76 exit 1
77 }
78
79 # build the mpack utility
80 build_mpack()
81 {
82 printf "building the mpack utility... "
83 MPACK="$MPACKDIR/mpack"
84 if test ! -x $MPACK ; then
85 if test ! -d $MPACKDIR ; then
86 echo
87 echo "Error: can't find \"$MPACKDIR\""
88 echo " are you sure this program is being run in the correct "
89 echo " (that is, \"MITGCM_ROOT\verification\") directory?"
90 echo
91 HAVE_MPACK=f
92 fi
93 if test "x$CC" = x ; then
94 export CC=cc
95 fi
96 printf "building mpack (using CC=$CC)... "
97 ( cd $MPACKDIR && ./configure && $MAKE ) > tr_build_mpack.out 2>&1
98 RETVAL=$?
99 if test "x$RETVAL" != x0 ; then
100 echo
101 echo "Error building the mpack tools at: $MPACK_DIR"
102 echo
103 HAVE_MPACK=f
104 else
105 rm -f tr_build_mpack.out
106 HAVE_MPACK=t
107 echo "done"
108 fi
109 else
110 HAVE_MPACK=t
111 echo "already exist"
112 fi
113 }
114
115 testoutput_var()
116 {
117 # testoutput_var dir s1 label subdir reference_output
118 #
119 # compares 1 variable output selected from file $dir/$subdir/$OUTPUTFILE
120 # with same output from reference file $dir/results/$reference_output
121 # using search strings s1 and text label
122
123 if [ $debug -gt 0 ]; then
124 echo testoutput_var: grep "$2" $1/$4/$OUTPUTFILE 1>&2
125 fi
126 if [ -r $1/$4/$OUTPUTFILE ]; then
127 grep "$2" $1/$4/$OUTPUTFILE | sed 's/.*=//' | cat -n > tmp1.txt
128 lncntA=`wc -l tmp1.txt | awk '{print $1}' `
129 if [ $lncntA -lt 2 ]; then
130 if [ $verbose -gt 0 ]; then
131 echo Not enough lines of output when searching for "$2" 1>&2
132 fi
133 return 99
134 fi
135 else
136 echo testoutput_var: $OUTPUTFILE from model run was not readable 1>&2
137 return 99
138 fi
139 if [ $debug -gt 0 ]; then
140 echo testoutput_var: grep "$2" $1/results/$5 1>&2
141 fi
142 grep "$2" $1/results/$5 | sed 's/.*=//' | cat -n > tmp2.txt
143 lncntB=`wc -l tmp2.txt | awk '{print $1}' `
144 if [ $lncntB -lt 2 ]; then
145 if [ $verbose -gt 0 ]; then
146 echo Not enough lines of output when searching for "$2" 1>&2
147 fi
148 return 99
149 fi
150 if [ $lncntA -ne $lncntB ]; then
151 if [ $verbose -gt 0 ]; then
152 echo Not same Nb of lines when searching for "$2" ":" $lncntA $lncntB 1>&2
153 fi
154 return 99
155 fi
156 has_nan=`cat tmp1.txt | grep -i nan | wc -l`
157 if [ $has_nan -gt 0 ] ; then
158 echo testoutput_var: $OUTPUTFILE contains $has_nan NaN values 1>&2
159 return 99
160 fi
161 has_inf=`cat tmp1.txt | grep -i inf | wc -l`
162 if [ $has_inf -gt 0 ] ; then
163 echo testoutput_var: $OUTPUTFILE contains $has_inf Inf values 1>&2
164 return 99
165 fi
166 if [ $debug -gt 0 ]; then
167 echo testoutput_var: join tmp1.txt tmp2.txt 1>&2
168 fi
169 join tmp1.txt tmp2.txt | awk '{print $1 " " $2 " " $3}' > tmp3.txt
170 if [ $debug -gt 0 ]; then
171 echo testoutput_var: compare_lines 1>&2
172 fi
173 if [ $verbose -gt 1 ]; then
174 cat tmp3.txt 1>&2
175 fi
176 echo "-1" >> tmp3.txt
177 # On the SGI O3K (*not* the O2K), "cat -n" inserts a ":" after the line number
178 cat tmp3.txt | sed -e 's|:||g' > tmp4.txt
179 digits_of_similarity=`./tr_cmpnum < tmp4.txt`
180 if [ $digits_of_similarity -eq 99 ]; then
181 if [ $verbose -gt 0 ]; then
182 echo testoutput_var: No comparison was available for \"$3\" 1>&2
183 fi
184 digits_of_similarity=99
185 else
186 if [ $verbose -gt 0 ]; then
187 echo There were $digits_of_similarity decimal places of similarity for \"$3\" 1>&2
188 fi
189 fi
190 rm -f tmp1.txt tmp2.txt tmp3.txt tmp4.txt
191
192 return $digits_of_similarity
193 }
194
195 testoutput_run()
196 {
197 # testoutput_run directory subdir reference_output
198 #
199 # test output from 1 run in "directory"
200 # --> same processing for adjoint & forward test
201 # default list of output variables to be checked:
202 # 1rst : main variable used to decide if it pass or FAIL
203 # others : number of matching digits to be printed in summary.txt
204 listChk=$DEF_CHECK_LIST
205 # load experiment-specific list from file "tr_checklist" (if it exist)
206 if test -r $1/$2/tr_checklist ; then listChk=`cat $1/$2/tr_checklist` ; fi
207 sVar=`echo $listChk | awk '{print $1}'`
208 # remove 1rst var and expand the list: + => min max mean s.d
209 listVar=`echo $listChk | sed 's/ [a-zA-Z0-9]*+/&mn &mx &av &sd/g' \
210 | sed 's/+//g' | sed "s/^$sVar//"`
211 if [ $debug -gt 0 ]; then echo "testoutput_run: listVar(I)='$listVar'" 1>&2 ; fi
212 # check for ptracer output in reference_output file :
213 outpref=$1/results/$3
214 ptr_mon="trcstat_ptracerXX_min trcstat_ptracerXX_max"
215 ptr_mon="$ptr_mon trcstat_ptracerXX_mean trcstat_ptracerXX_sd"
216 for ii in $PTRACERS_NUM ; do
217 ptrfound=0
218 for jj in $ptr_mon ; do
219 name=`eval "echo $jj | sed -e 's|XX|0"$ii"|g'"`
220 tst=`grep $name $outpref | wc -l | awk '{print $1}'`
221 if test ! "x$tst" = x0 ; then ptrfound=1 ; fi
222 done
223 if test $ptrfound = '1' ; then
224 eval "HAVE_PTR0"$ii"=t"
225 else
226 eval "HAVE_PTR0"$ii"=f"
227 if test "x$ADM" = x -a "x$OADM" = x; then
228 # remove this ptr from the list of output variable to check
229 # echo "-- ptr test=" $tst "number of var=" `echo $listVar | awk '{print NF}'` 1>&2
230 listVar=`echo "$listVar" | sed "s/ pt$ii..//g"`
231 fi
232 fi
233 # eval 'echo "HAVE_PTR0'$ii' = $HAVE_PTR0'$ii'"' 1>&2
234 done
235 tst=`echo $sVar $listVar | awk '{ for(i=2;i<=NF;i++){if($i==$1)t+=1}; print t }'`
236 if test $tst != 1 ; then
237 if test $tst = 0 ; then echo "==> WARNING: selected var >$sVar< not found" 1>&2
238 else echo "==> WARNING: found selected var >$sVar< $tst times" 1>&2 ; fi
239 echo "==> WARNING: in checked list:" $listVar 1>&2
240 #- put it back once:
241 listVar=" $sVar "`echo "$listVar " | sed "s/ $sVar / /g"`
242 fi
243 if [ $debug -gt 0 ]; then echo "testoutput_run: listVar(M)='$listVar'" 1>&2 ; fi
244 echo "listVar='$listVar'" >> $locDIR"/summary.txt"
245 #---
246 allargs=""
247 for xx in $listVar
248 do
249 case $xx in
250 'PS') if [ $debug -gt 0 ]
251 then echo testoutput_run: testoutput_var $1 cg2d_init_res 1>&2 ; fi
252 testoutput_var $1 "cg2d_init_res" "Press. Solver (cg2d)" $2 $3; yy=$?
253 if [ $debug -gt 0 ] ; then echo testoutput_run: cg2dres=$yy 1>&2 ; fi ;;
254 'Cost') testoutput_var $1 "ADM ref_cost_function" "ADM CostFct" $2 $3; yy=$? ;;
255 'AdGrd') testoutput_var $1 "ADM adjoint_gradient" "ADM Ad Grad" $2 $3; yy=$? ;;
256 'FDGrd') testoutput_var $1 "ADM finite-diff_grad" "ADM FD Grad" $2 $3; yy=$? ;;
257 'Tmn') testoutput_var $1 "dynstat_theta_min" "Theta minimum" $2 $3; yy=$? ;;
258 'Tmx') testoutput_var $1 "dynstat_theta_max" "Theta maximum" $2 $3; yy=$? ;;
259 'Tav') testoutput_var $1 "dynstat_theta_mean" "Theta mean" $2 $3; yy=$? ;;
260 'Tsd') testoutput_var $1 "dynstat_theta_sd" "Theta Std.Dev" $2 $3; yy=$? ;;
261 'Smn') testoutput_var $1 "dynstat_salt_min" "Salt minimum" $2 $3; yy=$? ;;
262 'Smx') testoutput_var $1 "dynstat_salt_max" "Salt maximum" $2 $3; yy=$? ;;
263 'Sav') testoutput_var $1 "dynstat_salt_mean" "Salt mean" $2 $3; yy=$? ;;
264 'Ssd') testoutput_var $1 "dynstat_salt_sd" "Salt Std.Dev" $2 $3; yy=$? ;;
265 'Umn') testoutput_var $1 "dynstat_uvel_min" "U minimum" $2 $3; yy=$? ;;
266 'Umx') testoutput_var $1 "dynstat_uvel_max" "U maximum" $2 $3; yy=$? ;;
267 'Uav') testoutput_var $1 "dynstat_uvel_mean" "U mean" $2 $3; yy=$? ;;
268 'Usd') testoutput_var $1 "dynstat_uvel_sd" "U Std.Dev" $2 $3; yy=$? ;;
269 'Vmn') testoutput_var $1 "dynstat_vvel_min" "V minimum" $2 $3; yy=$? ;;
270 'Vmx') testoutput_var $1 "dynstat_vvel_max" "V maximum" $2 $3; yy=$? ;;
271 'Vav') testoutput_var $1 "dynstat_vvel_mean" "V mean" $2 $3; yy=$? ;;
272 'Vsd') testoutput_var $1 "dynstat_vvel_sd" "V Std.Dev" $2 $3; yy=$? ;;
273 'pt1mn'|'pt2mn'|'pt3mn'|'pt4mn'|'pt5mn') ii=`echo $xx | sed 's/pt//' | sed 's/..$//'`
274 testoutput_var $1 "trcstat_ptracer0"$ii"_min" "p0"$ii"_min" $2 $3; yy=$? ;;
275 'pt1mx'|'pt2mx'|'pt3mx'|'pt4mx'|'pt5mx') ii=`echo $xx | sed 's/pt//' | sed 's/..$//'`
276 testoutput_var $1 "trcstat_ptracer0"$ii"_max" "p0"$ii"_max" $2 $3; yy=$? ;;
277 'pt1av'|'pt2av'|'pt3av'|'pt4av'|'pt5av') ii=`echo $xx | sed 's/pt//' | sed 's/..$//'`
278 testoutput_var $1 "trcstat_ptracer0"$ii"_mean" "p0"$ii"_mean" $2 $3; yy=$? ;;
279 'pt1sd'|'pt2sd'|'pt3sd'|'pt4sd'|'pt5sd') ii=`echo $xx | sed 's/pt//' | sed 's/..$//'`
280 testoutput_var $1 "trcstat_ptracer0"$ii"_sd" "p0"$ii"_StDv" $2 $3; yy=$? ;;
281 'Qntmn') testoutput_var $1 "forcing_qnet_min" "Qnet minimum" $2 $3; yy=$? ;;
282 'Qntmx') testoutput_var $1 "forcing_qnet_max" "Qnet maximum" $2 $3; yy=$? ;;
283 'Qntav') testoutput_var $1 "forcing_qnet_mean" "Qnet mean" $2 $3; yy=$? ;;
284 'Qntsd') testoutput_var $1 "forcing_qnet_sd" "Qnet Std.Dev" $2 $3; yy=$? ;;
285 'aSImn') testoutput_var $1 "seaice_area_min" "SIce Area min" $2 $3; yy=$? ;;
286 'aSImx') testoutput_var $1 "seaice_area_max" "SIce Area max" $2 $3; yy=$? ;;
287 'aSIav') testoutput_var $1 "seaice_area_mean" "SIce Area mean" $2 $3; yy=$? ;;
288 'aSIsd') testoutput_var $1 "seaice_area_sd" "SIce Area StDv" $2 $3; yy=$? ;;
289 'hSImn') testoutput_var $1 "seaice_heff_min" "SIce Heff min" $2 $3; yy=$? ;;
290 'hSImx') testoutput_var $1 "seaice_heff_max" "SIce Heff max" $2 $3; yy=$? ;;
291 'hSIav') testoutput_var $1 "seaice_heff_mean" "SIce Heff mean" $2 $3; yy=$? ;;
292 'hSIsd') testoutput_var $1 "seaice_heff_sd" "SIce Heff StDv" $2 $3; yy=$? ;;
293 'AthSiG') testoutput_var $1 "thSI_Ice_Area_G" "thSIc Area Global" $2 $3; yy=$? ;;
294 'AthSiS') testoutput_var $1 "thSI_Ice_Area_S" "thSIc Area South" $2 $3; yy=$? ;;
295 'AthSiN') testoutput_var $1 "thSI_Ice_Area_N" "thSIc Area North" $2 $3; yy=$? ;;
296 'HthSiG') testoutput_var $1 "thSI_IceH_ave_G" "thSIc H Global" $2 $3; yy=$? ;;
297 'HthSiS') testoutput_var $1 "thSI_IceH_ave_S" "thSIc H South" $2 $3; yy=$? ;;
298 'HthSiN') testoutput_var $1 "thSI_IceH_ave_N" "thSIc H North" $2 $3; yy=$? ;;
299 *) yy=99; echo "WARNING: asking for var=$xx : not recognized !" 1>&2 ;;
300 esac
301 if test $xx = $sVar
302 then allargs="$allargs > $yy <"
303 else allargs="$allargs $yy"
304 fi
305 done
306
307 nbVar=`echo $listVar | awk '{print NF}'`
308 if [ $nbVar -lt $LEN_CHECK_LIST ] ; then
309 #-- fill line (up to standard length) with dot:
310 adNul=`expr $LEN_CHECK_LIST - $nbVar | awk '{for(i=1;i<=$1;i++){print "."}}'`
311 echo $allargs $adNul
312 else
313 echo $allargs
314 fi
315 # <-- same processing for adjoint & forward test
316 }
317
318 genmakemodel()
319 {
320 # genmakemodel directory
321 if test "x$NOGENMAKE" = xt ; then
322 echo "genmake skipped!"
323 else
324 if test "x$BASH" = x ; then
325 GENMAKE2="../../../tools/genmake2"
326 else
327 GENMAKE2="$BASH ../../../tools/genmake2 -bash $BASH"
328 fi
329 (
330 cd $1;
331 command="$GENMAKE2 -ds -m $MAKE"
332 if test "x$MKDEPEND" != x ; then
333 command="$command -makedepend=$MKDEPEND"
334 fi
335 if test "x$ADM" = xt ; then
336 command="$command --mods=../code_ad"
337 elif test "x$OADM" = xt ; then
338 command="$command -adof ../../../tools/adjoint_options/adjoint_oad -mods '../code_oad ../../OpenAD/code_oad_all'"
339 else
340 command="$command -mods=../code"
341 fi
342 if test "x$OPTFILE" != xNONE ; then
343 command="$command -optfile=$OPTFILE"
344 fi
345 if test $OptLev = 1 ; then
346 command="$command -ieee"
347 fi
348 if test $OptLev = 0 ; then
349 command="$command -devel"
350 fi
351 if test "x$GSL" = xt ; then
352 command="$command -gsl"
353 fi
354 if test "x$MPI" != x0 ; then
355 command="$command -mpi"
356 fi
357 if test "x$MULTI_THREAD" = xt ; then
358 #- run multi-threaded using OpenMP:
359 command="$command -omp"
360 fi
361 if test "x$USE_R4" = xt ; then
362 command="$command -use_r4"
363 fi
364 if test "x$EXTRFLG" != x ; then
365 command="$command -extra_flag $EXTRFLG"
366 fi
367 if test "x$TS" = xt ; then
368 command="$command -ts"
369 fi
370 if test "x$PAPIS" = xt ; then
371 command="$command -papis"
372 else
373 if test "x$PCLS" = xt ; then
374 command="$command -pcls"
375 fi
376 fi
377 printf 'genmake ... '
378 eval $command > genmake.tr_log 2>&1
379 RETVAL=$?
380 # Reduce the size of the testing emails!
381 head -100 Makefile > $CDIR/Makefile_head
382 if test "x$RETVAL" != x0 ; then
383 tail genmake.tr_log
384 echo "genmakemodel: genmake failed"
385 cp genmake.log genmake_* genmake.tr_log $CDIR
386 return 1
387 else
388 echo "successful"
389 fi
390 )
391 fi
392 }
393
394 makeclean()
395 {
396 # makeclean directory
397 if test "x$NODEPEND" = xf ; then rm -f $1/make.tr_log ; fi
398 if test "x$NOCLEAN" = xt ; then
399 echo "make Clean skipped!"
400 else
401 (
402 cd $1;
403 #if test -e $OUTPUTFILE ; then rm -f $OUTPUTFILE ; fi
404 if test -r Makefile ; then
405 printf 'clean build-dir: make Clean ... '
406 $MAKE Clean >> make.tr_log 2>&1
407 RETVAL=$?
408 if test "x$RETVAL" != x0 ; then
409 tail make.tr_log
410 echo "makeclean: \"make Clean\" failed"
411 cp make.tr_log genmake.log genmake.tr_log $CDIR
412 return 1
413 fi
414 echo successful
415 else
416 echo ''
417 fi
418 exit 0
419 )
420 fi
421 }
422
423 run_clean()
424 {
425 # run_clean directory
426 if test "x$NOCLEAN" = xt ; then
427 echo "run_clean skipped!"
428 else
429 (
430 cd $1;
431 printf 'clean run-dir ... '
432 # part of what is done after "make clean" when doing "make CLEAN"
433 find . -name "*.meta" -exec rm {} \;
434 find . -name "*.data" -exec rm {} \;
435 find . -name "fort.*" -exec rm {} \;
436 find . -type l -exec rm {} \;
437 #- should remove executable only if sym-link (alredy done above)
438 rm -f $RUNLOG *.txt STD* *diagnostics.log datetime
439 rm -rf mnc_test_*
440 rm -f *_MIT_CE_000.opt0000 costfunction*0000
441 echo successful
442 exit 0
443 )
444 fi
445 }
446
447 makedependmodel()
448 {
449 # makedependmodel directory
450 if test "x$NODEPEND" = xt ; then
451 echo "make depend skipped!"
452 else
453 (
454 cd $1;
455 printf 'make depend ... '
456 $MAKE depend >> make.tr_log 2>&1
457 RETVAL=$?
458 if test "x$RETVAL" != x0 ; then
459 tail make.tr_log
460 echo "makedependmodel: make depend failed"
461 cp make.tr_log genmake.log genmake.tr_log $CDIR
462 return 1
463 else
464 echo successful
465 fi
466 )
467 fi
468 }
469
470 makemodel()
471 {
472 # makemodel directory
473 (
474 mk_fail=0
475 if test "x$NOMAKE" = xt ; then
476 cd $1;
477 if test -x $EXECUTABLE ; then
478 echo "make skipped!"
479 else
480 echo "no executable!"
481 mk_fail=3
482 fi
483 else
484 cd $1;
485 if test -r Makefile ; then
486 printf 'make ... '
487 $MAKE $TARG >> make.tr_log 2>&1
488 RETVAL=$?
489 if test "x$RETVAL" != x0 ; then
490 tail make.tr_log
491 echo failed
492 cp genmake.log genmake.tr_log $CDIR
493 tail -$NBLINES_MKLOG make.tr_log > $CDIR"/make.tr_log_tail"
494 rm -f $EXECUTABLE
495 mk_fail=1
496 else
497 echo successful
498 fi
499 else
500 echo "no Makefile !"
501 mk_fail=2
502 fi
503 fi
504 if test "x$ADM" = xt -a -f taf_ad.log ; then
505 head -1 taf_ad.log >> $CDIR"/summary.txt"
506 nerr=`grep -c 'TAF *.* ERROR ' taf_ad.log`
507 nwar=`grep -c 'TAF RECOMPUTATION *.* WARNING ' taf_ad.log`
508 echo " TAF reports $nerr Errors and $nwar Recomputation Warnings" \
509 >> $CDIR"/summary.txt"
510 fi
511 if test $mk_fail != 0 ; then return $mk_fail ; fi
512 )
513 }
514
515 mk_mpi_size()
516 {
517 # mk_mpi_size input_file output_file proc_Nb prefer_to_split_X
518 #
519 # make new SIZE.h (=output_file) from SIZE.h_mpi (=input_file)
520 # for an MPI build with no more than proc_Nb processors ;
521 # return the effective number of processors.
522
523 inp=$1
524 out=$2
525 np=$3
526 dirX=$4
527 tmp=TTT.$$
528
529 px=`grep "^ & *nPx *=" $inp | sed "s/^ & *nPx *= *//" | sed 's/, *$//'`
530 py=`grep "^ & *nPy *=" $inp | sed "s/^ & *nPy *= *//" | sed 's/, *$//'`
531 sx=`grep "^ & *nSx *=" $inp | sed "s/^ & *nSx *= *//" | sed 's/, *$//'`
532 sy=`grep "^ & *nSy *=" $inp | sed "s/^ & *nSy *= *//" | sed 's/, *$//'`
533
534 #- find the largest divisor of input_file proc Nb, but not larger than $np
535 pp=0
536 i=1
537 while [ $i -le $px ] ; do
538 if [ `expr $px % $i` -eq 0 ] ; then
539 j=1
540 while [ $j -le $py ] ; do
541 if [ `expr $py % $j` -eq 0 ] ; then
542 ij=`expr $i \* $j`
543 if [ $ij -gt $pp ] ; then
544 flag=1
545 elif [ $ij -eq $pp ] ; then
546 flag=$dirX
547 else
548 flag=0
549 fi
550 if test $flag = 1 ; then
551 if [ $ij -le $np ] ; then
552 ix=$i ; jy=$j ; pp=$ij
553 #echo " ix,jy= $ix,$jy"
554 fi
555 fi
556 fi
557 j=`expr $j + 1`
558 done
559 fi
560 i=`expr $i + 1`
561 done
562
563 #- create new SIZE.h type file:
564 sx=`expr $sx \* $px / $ix`
565 sy=`expr $sy \* $py / $jy`
566 if [ $verbose -gt 1 ]; then
567 echo " px,py,np= $px,$py,$np : New MPI size: px,py= $ix,$jy : sx,sy= $sx,$sy"
568 fi
569 sed "/^ \& *nPx *=/s/[0-9]*,/$ix,/" $inp > $tmp
570 sed "/^ \& *nPy *=/s/[0-9]*,/$jy,/" $tmp > $out
571 sed "/^ \& *nSx *=/s/[0-9]*,/$sx,/" $out > $tmp
572 sed "/^ \& *nSy *=/s/[0-9]*,/$sy,/" $tmp > $out
573 rm -f $tmp
574 return $pp
575 }
576
577 symlink_mpifiles()
578 {
579 # Put special links so that MPI specific files are used
580 # This MUST be invoked between makeclean and makelinks because
581 # the Makefile will link to non-mpi files by default
582
583 dir=$1
584 code_dir=$2
585 build_dir=$dir/$3
586
587 # These are files that should replace their counter-part when using -mpi
588 MPI_FILES=`(cd $dir/$code_dir; find . -name "*_mpi" -print)`
589
590 for ii in $MPI_FILES ; do
591 i=`echo $ii | sed 's:^\./::'`
592 name=`echo $i | sed 's:_mpi::'`
593 file="../$code_dir/$i"
594 if test $name = 'SIZE.h' ; then file="SIZE.h.mpi" ; fi
595
596 # Is this an MPI run?
597 if test "x$MPI" = x0 ; then
598 # NO: We undo any _mpi symbolically linked files
599 if test -L $build_dir/$name ; then
600 ( cd $build_dir ; cmp $name $file > /dev/null 2>&1 )
601 RETVAL=$?
602 if test "x$RETVAL" = x0 ; then
603 if [ $verbose -gt 1 ]; then
604 echo " Un-linking $name from ../$code_dir" ; fi
605 rm -f $build_dir/$name
606 fi
607 fi
608 else
609 # YES: We symbolically link these files to the build
610 # dir so long as there is no real file in place
611 ( cd $build_dir ; cmp $name $file > /dev/null 2>&1 )
612 RETVAL=$?
613 if [ $verbose -gt 1 ]; then echo " cmp $name $file returns: $RETVAL" ; fi
614 if test "x$RETVAL" != x0 ; then
615 if test -h $build_dir/$name ; then rm -f $build_dir/$name ; fi
616 if test ! -r $build_dir/$name ; then
617 if [ $verbose -gt 1 ]; then echo " Linking $name to $file" ; fi
618 (cd $build_dir; ln -sf $file $name)
619 fi
620 fi
621 fi
622 done
623 }
624
625 linkdata()
626 {
627 # linkdata run_dir input_dir_1 input_dir_2 ...
628 #
629 # symbolically link data files to run directory
630 if test -d $1 ; then
631 (
632 cd $1 ; shift
633 echo 'linkdata from dirs:' $*
634 inpMPI=`(cd ../$1 ; find . -name "*.mpi" -print | sed 's:^\./::')`
635 for xx in $inpMPI ; do
636 if test -r "../"$1"/"$xx ; then
637 # found 1 _mpi sfx file in 1rst input dir and it is readable
638 yy=`echo $xx | sed 's:\.mpi$::'`
639 if test "x$MPI" = "x0" ; then
640 # not mpi test: remove symbolic link
641 if test -h $yy ; then rm -f $yy ; fi
642 else
643 # mpi test: remove symbolic link & link .mpi sfx file
644 if test -h $yy ; then rm -f $yy ; fi
645 if test ! -r $yy ; then
646 ln -sf "../"$1"/"$xx $yy ;
647 printf " $xx" 1>&2
648 fi
649 fi
650 fi
651 done
652 if test -r "../"$1"/eedata.mth" ; then
653 # found eedata.mth in 1rst input dir and it is readable
654 if test "x$MULTI_THREAD" = "xt" ; then
655 # multi-threaded test: remove symbolic link & link eedata.mth
656 if test -h eedata ; then rm -f eedata ; fi
657 if test ! -r eedata ; then
658 ln -sf "../"$1"/eedata.mth" eedata ;
659 printf ' eedata.mth' 1>&2
660 fi
661 else
662 # not multi-threaded test: remove eedata symbolic link
663 if test -h eedata ; then rm -f eedata ; fi
664 fi
665 fi
666 prevDir='NONE'
667 for ldir in $* ; do
668 if test -d "../"$ldir -a $ldir != $prevDir ; then
669 printf " ldir=${ldir}:" 1>&2
670 files=`( cd "../"$ldir ; ls -1 | grep -v CVS )`
671 for i in $files ; do
672 if test ! -d "../"$ldir/$i ; then
673 if test ! -r $i ; then
674 printf ' '$i 1>&2
675 ln -sf "../"$ldir"/"$i $i
676 fi
677 fi
678 done
679 printf ' ;' 1>&2
680 if test -x "../"$ldir"/"prepare_run ; then
681 "../"$ldir"/"prepare_run 1>&2
682 else
683 echo '' 1>&2
684 fi
685 fi
686 prevDir=$ldir
687 done
688 )
689 fi
690 }
691
692 runmodel()
693 {
694 # runmodel directory
695 #
696 # runs $COMMAND in "directory"
697 # (where "$COMMAND" is relative to "directory")
698 (
699 cd $1
700 printf 'runmodel in %s ... ' $1
701 if test "x$MPI" != x0 ; then
702 #- adjust the MPI run command with the right number of Procs
703 #echo '' ; echo " COMMAND='$COMMAND'"
704 COMMAND=`echo $COMMAND | sed "s/ TR_NPROC / $LOC_NPROC /"`
705 if test "x$MPI_MFILE" != x ; then
706 COMMAND=`echo $COMMAND | sed "s/ TR_MFILE / ..\/..\/$LOC_MFILE /"`
707 fi
708 #echo " COMMAND='$COMMAND'"
709 fi
710 if test -L $EXECUTABLE ; then
711 if test -x "../"$builddir"/"$EXECUTABLE ; then
712 cmp $EXECUTABLE "../"$builddir"/"$EXECUTABLE > /dev/null 2>&1
713 outD=$? ; if test "x$outD" != x0 ; then rm -f $EXECUTABLE ; fi
714 else rm -f $EXECUTABLE
715 fi
716 fi
717 if test ! -x $EXECUTABLE -a -x "../"$builddir"/"$EXECUTABLE ; then
718 echo " link" $EXECUTABLE "from dir ../"$builddir > run.log_tmp
719 ln -sf "../"$builddir"/"$EXECUTABLE .
720 fi
721 if test ! -x $EXECUTABLE ; then
722 rm -f $RUNLOG ; touch $RUNLOG
723 if test -f run.log_tmp ; then cat run.log_tmp >> $RUNLOG ; fi
724 echo " no executable:" $EXECUTABLE >> $RUNLOG
725 RETVAL=8
726 ENDVAL=-1
727 else
728 if test ! -f $OUTPUTFILE -o $OUTPUTFILE -ot $EXECUTABLE ; then
729 # output do not exist or is older than executable:
730 rm -f $OUTPUTFILE $RUNLOG ; touch $RUNLOG
731 if test -f run.log_tmp ; then cat run.log_tmp >> $RUNLOG ; fi
732 ( eval $COMMAND ) >> $RUNLOG 2>&1
733 RETVAL=$?
734 ENDVAL=`tail $OUTPUTFILE | grep -c 'PROGRAM MAIN: Execution ended Normally'`
735 if [ $POSTCLEAN -eq 1 -a $ENDVAL -gt 0 ] ; then
736 find . -name "*.meta" -exec rm {} \;
737 find . -name "*.data" -exec rm {} \;
738 rm -rf mnc_test_*
739 fi
740 else
741 RETVAL=0
742 ENDVAL=`tail $OUTPUTFILE | grep -c 'PROGRAM MAIN: Execution ended Normally'`
743 touch $RUNLOG
744 if test -f run.log_tmp ; then cat run.log_tmp >> $RUNLOG ; fi
745 echo "---------->> $OUTPUTFILE is up to date " >> $RUNLOG 2>&1
746 fi
747 fi
748 rm -f run.log_tmp
749 #- in all cases where OutputFile exists, report SIZE (and AD time)
750 if test -f $OUTPUTFILE ; then
751 grep '(PID\.TID 0000\.0001) n.. =' $OUTPUTFILE \
752 | sed 's/(PID.TID 0000.0001) //' >> $CDIR"/summary.txt"
753 if test "x$ADM" = xt ; then
754 grep -A3 'Seconds in section "ALL' $OUTPUTFILE >> $CDIR"/summary.txt"
755 fi
756 fi
757 if test -s STDERR.0000 ; then cp STDERR.0000 $CDIR"/STDERR.0000" ; fi
758 if [ $RETVAL -eq 0 -a $ENDVAL -gt 0 ] ; then
759 echo successful
760 printf '=> output from running in %s :\n' $1 1>&2
761 tail $RUNLOG | sed 's/^.*/> &/g' 1>&2
762 return 0
763 elif [ $RETVAL -ne 0 -a $ENDVAL -gt 0 ] ; then
764 #-- for some weird cases (run is finihed but with error code)
765 echo 'finished with error (run:' $RETVAL ' end:' $ENDVAL ')'
766 printf '=> output from running in %s :\n' $1 1>&2
767 tail $RUNLOG | sed 's/^.*/> &/g' 1>&2
768 return 0
769 else
770 echo 'failed (run:' $RETVAL ' end:' $ENDVAL ')'
771 printf '=> output from running in %s :\n' $1 1>&2
772 tail $RUNLOG | sed 's/^.*/> &/g' 1>&2
773 cp $RUNLOG $CDIR"/"$RUNLOG
774 return 1
775 fi
776 )
777 }
778
779 createcodelet()
780 {
781 # create codelet for comparing model output
782
783 printf "creating the comparison code (using CC=$CC)... "
784 cat > tr_cmpnum.c <<EOF
785 #include <stdio.h>
786 #include <math.h>
787 int main( int argc, char** argv ) {
788 int linnum,cmplin,best,lncnt;
789 double a,b,abave,relerr;
790 best = -22;
791 lncnt = 0;
792 while( 1 & ( (lncnt+=1) < 999 ) ) {
793 scanf("%d", &linnum);
794 if (linnum == -1) break;
795 scanf("%lf", &a); scanf("%lf", &b);
796 abave = 0.5*(fabs(a)+fabs(b));
797 if ( abave == abave ) {
798 if (abave > 0.0) {
799 relerr=fabs(a-b)/abave;
800 if (relerr > 0.0) { cmplin = (int)rint(log10(relerr)); }
801 else { cmplin = -16 ; }
802 best = (best > cmplin) ? best : cmplin; }
803 else { cmplin = -22 ; }
804 /* printf("%d ; %lf ; %lf\n",cmplin,a,b); */
805 }
806 else {
807 /* printf("%lf ; %lf ; %lf\n",abave,a,b); */
808 break; }
809 }
810 if (lncnt == 999) best=-29;
811 if (linnum != -1) best=-99;
812 printf("%d\n", -best);
813 return 0;
814 }
815 EOF
816 $CC -o tr_cmpnum tr_cmpnum.c -lm
817
818 if [ -x ./tr_cmpnum ]; then
819 echo "OK"
820 return 0
821 else
822 echo
823 echo "ERROR: failed to compile comparison code -- please specify"
824 echo " a C compiler using the CC environment variable."
825 exit 1
826 fi
827 }
828
829 formatresults()
830 {
831 # formatresults expt genmake depend make run results*
832
833 nm=$1
834 printf '%s %s %s %s' $2 $3 $4 $5
835 shift; shift; shift; shift; shift;
836 listPrt=$@
837 listRes=`echo $listPrt | sed 's/>//' | sed 's/<//'`
838 xx=`echo $listPrt | sed 's/.*>//' | sed 's/<.*//' | awk '{print $1}'`
839 printf '%3s' $listPrt
840 # line below does not work on hp-ux_ia64 : do those substitutions later on
841 # printf '%3s' $listPrt | sed 's/ 99/ --/g' | sed 's/ > />/' | sed 's/ < /</'
842
843 if [ $xx = '..' ]; then
844 printf ' N/O '
845 elif [ $xx = '--' ]; then
846 printf ' N/O '
847 elif [ $xx = 99 ]; then
848 printf ' N/O '
849 else
850 if [ $xx -ge $MATCH_CRIT ]; then
851 printf ' pass'
852 else
853 printf ' FAIL'
854 fi
855 fi
856 printf ' %s' $nm
857 printf '\n'
858
859 }
860
861 scandirs()
862 {
863 if [ $# -eq 1 ]; then
864 for arg in * ; do
865 test -f $arg/$1 && echo $arg
866 done
867 else
868 echo $*
869 fi
870 }
871
872
873 check_eedata()
874 {
875 # check_eedata eedata size.h
876 if [ $# -eq 2 ] ; then
877 if test -f $1 -a -f $2 ; then
878 nx=`grep "^ *nTx *=" $1 | tail -1 | sed 's/^ *nTx *= *//' | sed "s/, *$//"`
879 sx=`grep "^ & *nSx *=" $2 | sed "s/^ & *nSx *=//" | sed 's/, *$//'`
880 if test "x$nx" = x ; then
881 rx=10
882 else
883 rx=`expr $sx % $nx`
884 fi
885 ny=`grep "^ *nTy *=" $1 | tail -1 | sed 's/^ *nTy *= *//' | sed "s/, *$//"`
886 sy=`grep "^ & *nSy *=" $2 | sed "s/^ & *nSy *=//" | sed 's/, *$//'`
887 if test "x$ny" = x ; then
888 ry=20
889 else
890 ry=`expr $sy % $ny`
891 fi
892 echo `expr $rx + $ry`
893 else
894 echo '-1'
895 fi
896 elif [ $# -eq 1 ] ; then
897 if test -f $1 ; then
898 nx=`grep "^ *nTx *=" $1 | tail -1 | sed 's/^ *nTx *= *//' | sed "s/, *$//"`
899 if test "x$nx" = x ; then nx=1 ; fi
900 ny=`grep "^ *nTy *=" $1 | tail -1 | sed 's/^ *nTy *= *//' | sed "s/, *$//"`
901 if test "x$ny" = x ; then ny=1 ; fi
902 #echo $nx $ny
903 echo $nx
904 else
905 echo '-1'
906 fi
907 else
908 echo '-2'
909 fi
910
911 }
912
913 ###############################################################################
914
915
916 # Default properties
917 debug=0
918 verbose=1
919 NBLINES_MKLOG=16000
920
921 IEEE=true
922 if test "x$MITGCM_IEEE" != x ; then
923 IEEE=$MITGCM_IEEE
924 fi
925 OptLev=1
926 GSL=f
927
928 CLEANUP=f
929 NORUN=f
930 QUICK=f
931 NOMAKE=f
932 NOGENMAKE=f
933 NOCLEAN=f
934 NODEPEND=f
935 POSTCLEAN=0
936
937 BASH=
938 OPTFILE=NONE
939 ADDRESSES=
940 TESTDIRS=
941 SKIPDIRS=
942 MPACKDIR="../tools/mpack-1.6"
943 HAVE_MPACK=
944 MPACK=
945 COMMAND=
946 MKDEPEND=
947 if test "x$MAKE" = x ; then
948 MAKE=make
949 fi
950 if test "x$CC" = x ; then
951 CC=cc
952 fi
953 JOBS=
954 TARG=
955 MPI=0
956 MPI_MFILE=
957 MULTI_THREAD=f
958 OUTDIR=
959 DELDIR=
960 USE_R4=
961 EXTRFLG=
962
963 ADM=
964 OADM=
965
966 # list of pTracers to check for monitor output
967 PTRACERS_NUM="1 2 3 4 5"
968
969 MATCH_CRIT=10
970
971 printf "parsing options... "
972
973 ac_prev=
974 for ac_option ; do
975
976 # If the previous option needs an argument, assign it.
977 if test -n "$ac_prev"; then
978 eval "$ac_prev=\$ac_option"
979 ac_prev=
980 continue
981 fi
982
983 ac_optarg=`expr "x$ac_option" : 'x[^=]*=\(.*\)'`
984
985 case $ac_option in
986
987 -help | --help | -h | --h) usage ;;
988
989 -optfile | --optfile | -of | --of) ac_prev=OPTFILE ;;
990 -optfile=* | --optfile=* | -of=* | --of=*) OPTFILE=$ac_optarg ;;
991
992 -addr | --addr | -a | --a) ac_prev=ADDRESSES ;;
993 -addr=* | --addr=* | -a=* | --a=*) ADDRESSES=$ac_optarg ;;
994 -mpackdir | --mpackdir | -mpd | --mpd) ac_prev=MPACKDIR ;;
995 -mpackdir=* | --mpackdir=* | -mpd=* | --mpd=*) MPACKDIR=$ac_optarg ;;
996
997 -tdir | --tdir | -t | --t) ac_prev=TESTDIRS ;;
998 -tdir=* | --tdir=* | -t=* | --t=*) TESTDIRS=$ac_optarg ;;
999 -skipdir | --skipdir | -skd | --skd) ac_prev=SKIPDIRS ;;
1000 -skipdir=* | --skipdir=* | -skd=* | --skd=*) SKIPDIRS=$ac_optarg ;;
1001
1002 -bash | --bash | -b | --b) ac_prev=BASH ;;
1003 -bash=* | --bash=* | -b=* | --b=*) BASH=$ac_optarg ;;
1004
1005 -command | --command | -c | --c) ac_prev=COMMAND ;;
1006 -command=* | --command=* | -c=* | --c=*) COMMAND=$ac_optarg ;;
1007
1008 -makedepend | --makedepend | -md | --md) ac_prev=MKDEPEND ;;
1009 -makedepend=* | --makedepend=* | -md=* | --md=*) MKDEPEND=$ac_optarg ;;
1010
1011 -make | --make | -m | --m) ac_prev=MAKE ;;
1012 -make=* | --make=* | -m=* | --m=*) MAKE=$ac_optarg ;;
1013
1014 -odir | --odir) ac_prev=OUTDIR ;;
1015 -odir=* | --odir=*) OUTDIR=$ac_optarg ;;
1016
1017 -ptracers | --ptracers | -ptr | --ptr) ac_prev=PTRACERS_NUM ;;
1018 -ptracers=* | --ptracers=* | -ptr=* | --ptr=*) PTRACERS_NUM=$ac_optarg ;;
1019
1020 -match | --match ) ac_prev=MATCH_CRIT ;;
1021 -match=* | --match=* ) MATCH_CRIT=$ac_optarg ;;
1022
1023 -j | --j) ac_prev=JOBS ;;
1024 -j=* | --j=*) JOBS=$ac_optarg ;;
1025
1026 -ef | --ef) ac_prev=EXTRFLG ;;
1027 -ef=* | --ef=*) EXTRFLG=$ac_optarg ;;
1028
1029 -clean | --clean) CLEANUP=t ; DELDIR=t ;;
1030
1031 -norun | --norun | -nr | --nr) NORUN=t ;;
1032 -obj | --obj ) TARG='obj' ; NORUN=t ;;
1033 -runonly | --runonly | -ro | --ro) QUICK=t ; NOMAKE=t ;;
1034 -quick | --quick | -q | --q) QUICK=t ;;
1035 -nogenmake | --nogenmake | -ng | --ng) NOGENMAKE=t ;;
1036 -noclean | --noclean | -nc | --nc) NOCLEAN=t ;;
1037 -nodepend | --nodepend | -nd | --nd) NODEPEND=t ;;
1038
1039 -postclean | --postclean | -pc | --pc) POSTCLEAN=2 ;;
1040 -deloutp | --deloutp | -do | --do) POSTCLEAN=1 ;;
1041
1042 -mpi | --mpi) MPI=2 ;;
1043 -MPI | --MPI) ac_prev=MPI ;;
1044 -MPI=* | --MPI=*) MPI=$ac_optarg ;;
1045
1046 -mfile | --mfile | -mf | --mf) ac_prev=MPI_MFILE ;;
1047 -mfile=* | --mfile=* | -mf=* | --mf=*) MPI_MFILE=$ac_optarg ;;
1048
1049 -mth) MULTI_THREAD=t ;;
1050
1051 -adm | -ad) ADM=t ;;
1052 -oad) OADM=t; NODEPEND=t ;;
1053
1054 -ieee) echo "Warning: ignore option '-ieee' (already the default)"
1055 printf " ... " ;;
1056 -noieee) echo "Warning: will use option '-fast' instead of '-noieee' (obsolete)"
1057 printf " ... " ; OptLev=`expr $OptLev \* 2` ;;
1058 -fast) OptLev=`expr $OptLev \* 2` ;;
1059 -devel) OptLev=0 ;;
1060 -gsl) GSL=t ;;
1061
1062 -verbose) verbose=2 ;;
1063 -debug) debug=1 ;;
1064 -quiet) verbose=0 ;;
1065
1066 -deldir | -dd) DELDIR=t ;;
1067
1068 -use_r4|-ur4) USE_R4=t ;;
1069
1070 -ts) TS=t;;
1071 -papis) PAPIS=t;;
1072 -pcls) PCL=t;;
1073
1074 -*) echo "Error: unrecognized option: "$ac_option
1075 usage ;;
1076 *) echo "Error: unrecognized argument: "$ac_option
1077 usage ;;
1078
1079 esac
1080
1081 done
1082
1083 if test "x$QUICK" = xt ; then
1084 NOGENMAKE=t
1085 NOCLEAN=t
1086 NODEPEND=t
1087 fi
1088
1089 #- check length of MPI machine file:
1090 if test "x$MPI" != x0 -a "x$MPI_MFILE" != x ; then
1091 if test -r $MPI_MFILE ; then
1092 nl=`wc -l $MPI_MFILE | awk '{print $1}'`
1093 if [ $nl -lt $MPI ] ; then
1094 echo "Error: need at least $MPI nodes (currently only $nl) in MPI_MFILE=$MPI_FILE"
1095 usage
1096 fi
1097 if [ $verbose -gt 1 ]; then
1098 echo " MPI_MFILE=$MPI_MFILE : $nl procs for MPI=$MPI run"
1099 fi
1100 else
1101 echo "Error: cannot access MPI_MFILE=$MPI_FILE"
1102 usage
1103 fi
1104 fi
1105
1106 #- setting for forward or ADM testing
1107 if test "x$ADM" = xt ; then
1108 if test "x$TARG" = xobj ; then TARG=adobj ; else TARG=adall ; fi
1109 code_dir=code_ad
1110 inputdir=input_ad
1111 ref_outp="output_adm.txt"
1112 EXECUTABLE="mitgcmuv_ad"
1113 elif test "x$OADM" = xt ; then
1114 TARG=adAll
1115 code_dir=code_oad
1116 inputdir=input_oad
1117 ref_outp="output_oadm.txt"
1118 EXECUTABLE="mitgcmuv_ad"
1119 else
1120 if test "x$JOBS" != x ; then TARG="-j $JOBS $TARG" ; fi
1121 code_dir=code
1122 inputdir=input
1123 ref_outp="output.txt"
1124 EXECUTABLE="mitgcmuv"
1125 fi
1126
1127 xx=`echo $TESTDIRS | awk '{print $1}'`
1128 if test "x$TESTDIRS" = x ; then
1129 LIST=`scandirs results/$ref_outp`
1130 elif test $xx = 'start_from' ; then
1131 xx=`echo $TESTDIRS | awk '{print $2}'`
1132 LIST=`scandirs results/$ref_outp | sed -n "/$xx/,$ p"`
1133 else
1134 #- expand group of experiments:
1135 LIST=" "
1136 for xx in $TESTDIRS
1137 do
1138 case $xx in
1139 'basic') LIST=${LIST}" aim.5l_cs hs94.128x64x5 ideal_2D_oce"
1140 LIST=${LIST}" lab_sea tutorial_baroclinic_gyre"
1141 LIST=${LIST}" tutorial_global_oce_latlon tutorial_plume_on_slope"
1142 ;;
1143 'tutorials')
1144 LIST=${LIST}" "`ls | grep 'tutorial_'` ;;
1145 *) LIST=${LIST}" "$xx ;;
1146 esac
1147 done
1148 fi
1149 #echo 'LIST='${LIST}'<'
1150 #- skip dirs, remove duplicate and non-directory:
1151 TESTDIRS=" "
1152 count=0
1153 for xx in $LIST
1154 do
1155 yy=`echo $SKIPDIRS | grep -c $xx`
1156 if test $yy = 0 ; then
1157 if test -d $xx ; then
1158 yy=`echo $TESTDIRS | grep -c $xx`
1159 if test $yy = 0 ; then TESTDIRS=${TESTDIRS}" "$xx ; fi
1160 else count=1 ;
1161 echo ""; echo -n " -- skip \"$xx\" (not a directory !)"
1162 fi
1163 else
1164 if test $count = 1 ; then echo -n ", \"$xx\""
1165 else count=1 ; echo "" ; echo -n " skip: \"$xx\""
1166 fi
1167 fi
1168 done
1169 if test $count = 1 ; then echo "" ; echo -n " ... " ; fi
1170 #echo 'TESTDIRS='${TESTDIRS}'<'
1171
1172 if test "x$OPTFILE" = xNONE -a "x$MITGCM_OF" != x ; then
1173 OPTFILE=$MITGCM_OF
1174 fi
1175
1176 LOC_MFILE='tr_mpi_mfile'
1177 RUNLOG="run.tr_log"
1178 OUTPUTFILE=$ref_outp
1179 if test "x$COMMAND" = x ; then
1180 COMMAND="./$EXECUTABLE > $OUTPUTFILE"
1181 fi
1182 if test "x$MPI" != x0 ; then
1183 OUTPUTFILE="STDOUT.0000"
1184 fi
1185
1186 echo "OK (COMMAND= $COMMAND )"
1187
1188 # set the Default List of output variables to be checked:
1189 # (use default or load experiment-specific list from file "tr_checklist")
1190 # content : 1rst = main variable used to decide if it pass or FAIL
1191 # others = number of matching digits to be printed in summary.txt
1192 if test "x$ADM" = x -a "x$OADM" = x; then
1193 DEF_CHECK_LIST='PS PS T+ S+ U+ V+ pt1+ pt2+ pt3+ pt4+ pt5+'
1194 EMPTY_RESULTS='.. .. .. .. .. .. .. .. .. .. .. .. .. .. .. .. ..'
1195 LEN_CHECK_LIST=`echo $DEF_CHECK_LIST | sed 's/ [a-zA-Z0-9]*+/&mn &mx &av &sd/g' | awk '{print NF-1}'`
1196 ii=`echo $EMPTY_RESULTS | awk '{print NF}'`
1197 EMPTY_RESULTS=$EMPTY_RESULTS`expr $LEN_CHECK_LIST - $ii | awk 'BEGIN{FS=":"}{for(i=1;i<=$1;i++){printf " ."}}'`
1198 else
1199 DEF_CHECK_LIST='AdGrd Cost AdGrd FDGrd'
1200 EMPTY_RESULTS='.. ..'
1201 LEN_CHECK_LIST=`echo $DEF_CHECK_LIST | sed 's/ [a-zA-Z0-9]*+/&mn &mx &av &sd/g' | awk '{print NF-1}'`
1202 fi
1203
1204 # create the FORTRAN comparison code
1205 if test -x tr_cmpnum ; then
1206 echo "skipping comparison code build"
1207 else
1208 createcodelet
1209 fi
1210
1211 # build the mpack utility (if ADDRESSES = NONE, do it to test the build)
1212 if test "x$ADDRESSES" = x ; then
1213 echo "skipping mpack build"
1214 else
1215 build_mpack
1216 fi
1217
1218 # Create a uniquely named directory to store results
1219 CMDLINE=$0
1220 for xx in "$@" ; do nw=`echo $xx | wc -w`
1221 if test $nw = '1' ; then CMDLINE="$CMDLINE $xx"
1222 else CMDLINE="$CMDLINE '$xx'" ; fi
1223 done
1224 #for xx in "$@" ; do CMDLINE="$CMDLINE '$xx'" ; done
1225 MACH=`hostname`
1226 UNAMEA=`uname -a`
1227 DATE=`date +%Y%m%d`
1228 BASE="tr_"$MACH"_"$DATE"_"
1229 if test "x$OUTDIR" != x ; then
1230 BASE="tr_"$OUTDIR"_"$DATE"_"
1231 else
1232 short_name=`hostname | sed 's/\..*$//'`
1233 BASE="tr_"$short_name"_"$DATE"_"
1234 fi
1235 DNUM=0
1236 DRESULTS="$BASE$DNUM"
1237 while test -e $DRESULTS ; do
1238 DNUM=$(( $DNUM + 1 ))
1239 DRESULTS="$BASE$DNUM"
1240 done
1241 mkdir $DRESULTS
1242 RETVAL=$?
1243 if test "x$RETVAL" != x0 ; then
1244 echo "ERROR: Can't create results directory \"./$DRESULTS\""
1245 exit 1
1246 fi
1247 SUMMARY="$DRESULTS/summary.txt"
1248 start_date=`date`
1249 echo $start_date > $SUMMARY
1250 echo 'run:' $CMDLINE >> $SUMMARY
1251 echo 'on :' $UNAMEA >> $SUMMARY
1252
1253 of_path=
1254 if test "x$OPTFILE" != xNONE ; then
1255 if test -r $OPTFILE ; then
1256 # get the path
1257 path=${OPTFILE%/*}
1258 if test "x$path" = x ; then
1259 of_path=`pwd`
1260 else
1261 of_path=`( cd $path > /dev/null 2>&1 ; pwd )`
1262 fi
1263 file=${OPTFILE##*/}
1264 OPTFILE=$of_path/$file
1265 cp $OPTFILE $DRESULTS
1266 echo >> $SUMMARY
1267 echo " OPTFILE=$OPTFILE" >> $SUMMARY
1268 else
1269 echo | tee $SUMMARY
1270 echo "ERROR: can't read OPTFILE=\"$OPTFILE\"" | tee $SUMMARY
1271 exit 1
1272 fi
1273 else
1274 echo >> $SUMMARY
1275 echo "No \"OPTFILE\" was specified ; genmake2 found and uses:" >> $SUMMARY
1276 #-note: to be filled later after 1rst run
1277 fi
1278 echo
1279 echo >> $SUMMARY
1280 if test "x$ADM" = x -a "x$OADM" = x; then
1281 if [ $MATCH_CRIT -lt 10 ] ;
1282 then line_0="default "$MATCH_CRIT ;
1283 else line_0="default "$MATCH_CRIT ; fi
1284 line_0="$line_0 ----T----- ----S----- ----U----- ----V-----"
1285 line_1="G D M c m s m s m s m s"
1286 line_2="e p a R g m m e . m m e . m m e . m m e ."
1287 line_3="n n k u 2 i a a d i a a d i a a d i a a d"
1288 line_4="2 d e n d n x n . n x n . n x n . n x n ."
1289 for ii in $PTRACERS_NUM ; do
1290 line_0="$line_0 --PTR 0"$ii"--"
1291 line_1="$line_1 m s"
1292 line_2="$line_2 m m e ."
1293 line_3="$line_3 i a a d"
1294 line_4="$line_4 n x n ."
1295 done
1296 echo "$line_0" | tee -a $SUMMARY
1297 echo "$line_1" | tee -a $SUMMARY
1298 echo "$line_2" | tee -a $SUMMARY
1299 echo "$line_3" | tee -a $SUMMARY
1300 echo "$line_4" | tee -a $SUMMARY
1301 echo " " | tee -a $SUMMARY
1302 else
1303 echo "ADJOINT=true" >> $SUMMARY
1304 echo >> $SUMMARY
1305 if [ $MATCH_CRIT -lt 10 ] ;
1306 then line_0="default "$MATCH_CRIT ;
1307 else line_0="default "$MATCH_CRIT ; fi
1308 echo "$line_0" | tee -a $SUMMARY
1309 cat << EOF | tee -a $SUMMARY
1310 G D M C A F
1311 e p a R o d D
1312 n n k u s G G
1313 2 d e n t r r
1314
1315 EOF
1316 fi
1317 echo "-------------------------------------------------------------------------------"
1318
1319 # ...and each test directory...
1320 for dir in $TESTDIRS ; do
1321
1322 # set builddir & rundir:
1323 builddir="build"
1324 if test ! -d $dir/$builddir ; then mkdir $dir/$builddir ; fi
1325 rundir="run"
1326 pfxdir="tr_$rundir"
1327 if test ! -d $dir/$rundir ; then
1328 rundir=$builddir
1329 fi
1330 CODE_DIR=$dir/$code_dir
1331 BUILD_DIR=$dir/$builddir
1332
1333 # Cleanup only!
1334 if test "x$CLEANUP" = xt ; then
1335 echo -n ' --- dir:' $BUILD_DIR ': '
1336 makeclean $BUILD_DIR
1337 ( cd $BUILD_DIR
1338 rm -f $EXECUTABLE *.bak
1339 rm -f genmake_state genmake_*optfile genmake.log
1340 rm -f SIZE.h.mpi genmake.tr_log make.tr_log
1341 )
1342 if test -d $dir/$rundir/CVS ; then
1343 echo -n ' --- dir:' $dir/$rundir ': '
1344 run_clean $dir/$rundir
1345 fi
1346 trdir=`( cd $dir ; find . -type d -name "$pfxdir.*" -print | sed 's/^.\///')`
1347 ttd=`echo $trdir | wc -w`
1348 if test $ttd != 0 ; then
1349 echo ' --- rm dir:' $trdir
1350 ( cd $dir ; rm -rf $trdir )
1351 fi
1352 continue
1353 fi
1354
1355 # Verify that the testdir exists and contains previous
1356 # results in the correct location--or skip this directory!
1357 fout=$dir"/results/"$ref_outp
1358 if test ! -r $fout ; then
1359 echo "can't read \"$fout\" -- skipping $dir"
1360 continue
1361 fi
1362
1363 # Check for specific files for particular type of run
1364
1365 if test ! -r $CODE_DIR"/SIZE.h_mpi" -a "x$MPI" != "x0" ; then
1366 echo "can't find \"$CODE_DIR/SIZE.h_mpi\" -- skipping $dir"
1367 continue
1368 fi
1369 if test ! -r $dir"/input/eedata.mth" -a "x$MULTI_THREAD" = "xt" ; then
1370 echo "can't find \"$dir/input/eedata.mth\" -- skipping $dir"
1371 continue
1372 fi
1373
1374 if test "x$MPI" != "x0" ; then
1375 prefer_X=0
1376 if test "x$MULTI_THREAD" = "xt" ; then
1377 retv=`check_eedata $dir"/input/eedata.mth"`
1378 if test $retv = 1 ; then prefer_X=1 ; fi
1379 fi
1380 #- create new SIZE.h with no more than '$MPI' Procs
1381 mk_mpi_size $CODE_DIR"/SIZE.h_mpi" $BUILD_DIR"/tr_size.mpi" $MPI $prefer_X
1382 LOC_NPROC=$?
1383 ( cd $BUILD_DIR
1384 if test -r SIZE.h.mpi ; then
1385 cmp tr_size.mpi SIZE.h.mpi > /dev/null 2>&1 ; RETVAL=$?
1386 else RETVAL=1
1387 fi
1388 if test "x$RETVAL" = x0 ; then
1389 rm -f tr_size.mpi
1390 else
1391 rm -f SIZE.h.mpi ; mv tr_size.mpi SIZE.h.mpi
1392 fi
1393 )
1394 if test "x$MPI_MFILE" != x ; then
1395 #- create new MPI machine-file with the right number of Procs
1396 rm -f $LOC_MFILE
1397 cat $MPI_MFILE | sort | uniq | head -$LOC_NPROC > $LOC_MFILE
1398 nl=`wc -l $LOC_MFILE | awk '{print $1}'`
1399 if [ $nl -lt $LOC_NPROC ] ; then
1400 rm -f $LOC_MFILE
1401 cat $MPI_MFILE | head -$LOC_NPROC > $LOC_MFILE
1402 #sed -n "1,$LOC_NPROC p" $MPI_MFILE > $LOC_MFILE
1403 fi
1404 if [ $verbose -gt 1 ]; then
1405 nl=`wc -l $LOC_MFILE | awk '{print $1}'`
1406 echo " new LOC_MFILE=$LOC_MFILE : $nl procs for LOC_NPROC=$LOC_NPROC"
1407 fi
1408 fi
1409 if test "x$MULTI_THREAD" = "xt" ; then
1410 retv=`check_eedata $dir"/input/eedata.mth" $BUILD_DIR"/SIZE.h.mpi"`
1411 if test $retv != 0 ; then
1412 echo "input/eedata.mth tiling misfit -- skipping $dir"
1413 continue
1414 fi
1415 fi
1416 fi
1417
1418 # Check whether there are "extra runs" for this testdir
1419 extra_runs=
1420 if test "x$NORUN" = xf ; then
1421 ex_run_dirs=`( cd $dir ; echo $inputdir.* )`
1422 fi
1423 #echo "ex_run_dirs='$ex_run_dirs'"
1424 for exd in $ex_run_dirs ; do
1425 name=`echo $exd | sed -e "s/$inputdir\.//"`
1426 refExOut=`echo $ref_outp | sed "s/\./.${name}./"`
1427 outf="$dir/results/$refExOut"
1428 if test -f $outf -a -r $outf ; then
1429 if test "x$MULTI_THREAD" = "xt" ; then
1430 if test -r $dir"/"$exd"/eedata.mth" ; then
1431 if test "x$MPI" = "x0" ; then
1432 extra_runs="$extra_runs $name"
1433 else
1434 retv=`check_eedata $dir"/"$exd"/eedata.mth" $BUILD_DIR"/SIZE.h.mpi"`
1435 if test $retv = 0 ; then
1436 extra_runs="$extra_runs $name"
1437 else
1438 echo $exd"/eedata.mth tiling misfit -- skipping $dir"
1439 fi
1440 fi
1441 #else echo $dir"/"$exd"/eedata.mth: not found"
1442 fi
1443 else
1444 extra_runs="$extra_runs $name"
1445 fi
1446 fi
1447 done
1448
1449 echo
1450 if test "x$extra_runs" = "x" ; then
1451 echo "Experiment: $dir"
1452 else
1453 echo "Experiment: $dir ; extra_runs=$extra_runs"
1454 fi
1455 echo
1456 unset genmake makedepend make run
1457 results=$EMPTY_RESULTS
1458
1459 # Create an output dir & summary.txt file for each tested experiment (tdir)
1460 locDIR=$DRESULTS"/"$dir
1461 mkdir $locDIR
1462 #- report to this experiment local summary file ---
1463 echo "DATE='$DATE' ; tdir='$dir'" > $locDIR"/summary.txt"
1464 echo "MACH='$MACH'" >> $locDIR"/summary.txt"
1465 echo "UNAMEA='$UNAMEA'" >> $locDIR"/summary.txt"
1466 CDIR=`pwd`"/$locDIR"
1467
1468 if test "x$NORUN" = xt ; then
1469 run=N
1470 genmakemodel $dir/$builddir && genmake=Y \
1471 && makeclean $dir/$builddir \
1472 && symlink_mpifiles $dir $code_dir $builddir \
1473 && makedependmodel $dir/$builddir && makedepend=Y \
1474 && makemodel $dir/$builddir && make=Y
1475 else
1476 genmakemodel $dir/$builddir && genmake=Y \
1477 && makeclean $dir/$builddir \
1478 && symlink_mpifiles $dir $code_dir $builddir \
1479 && makedependmodel $dir/$builddir && makedepend=Y \
1480 && makemodel $dir/$builddir && make=Y \
1481 && run_clean $dir/$rundir \
1482 && linkdata $dir/$rundir $inputdir \
1483 && runmodel $dir/$rundir && run=Y \
1484 && results=`testoutput_run $dir $rundir $ref_outp`
1485 fi
1486 #echo "results='$results'"
1487
1488 fres=`formatresults $dir ${genmake:-N} ${makedepend:-N} ${make:-N} ${run:-N} $results`
1489 echo 1>&2
1490 echo "$fres" | sed 's/ 99/ --/g' | sed 's/ > />/' | sed 's/ < /</' >> $SUMMARY
1491 echo "fresults='$fres'" | sed 's/ 99/ --/g' >> $locDIR"/summary.txt"
1492
1493 for ex in $extra_runs ; do
1494 unset run
1495 results=$EMPTY_RESULTS
1496 # reference output file
1497 refExOut=`echo $ref_outp | sed "s/\./.${ex}./g"`
1498 # Create an output dir & summary.txt file for each extra run (tdir.ex)
1499 locDIR=$DRESULTS"/"$dir"."$ex
1500 mkdir $locDIR
1501 #- report to this experiment local summary file ---
1502 echo "DATE='$DATE' ; tdir='$dir.$ex'" > $locDIR"/summary.txt"
1503 #echo "MACH='$MACH'" >> $locDIR"/summary.txt"
1504 #echo "UNAMEA='$UNAMEA'" >> $locDIR"/summary.txt"
1505 CDIR=`pwd`"/$locDIR"
1506 test ! -e "$dir/$pfxdir.$ex" && mkdir "$dir/$pfxdir.$ex"
1507 run_clean $dir/$pfxdir.$ex
1508 linkdata $dir/$pfxdir.$ex $inputdir.$ex $inputdir
1509 runmodel $dir/$pfxdir.$ex && run=Y \
1510 && results=`testoutput_run $dir $pfxdir.$ex $refExOut`
1511 fres=`formatresults $dir ${genmake:-N} ${makedepend:-N} ${make:-N} ${run:-N} $results`
1512 fres="$fres.$ex"
1513 echo 1>&2
1514 echo "$fres" | sed 's/ 99/ --/g' | sed 's/ > />/' | sed 's/ < /</' >> $SUMMARY
1515 echo "fresults='$fres'" | sed 's/ 99/ --/g' >> $locDIR"/summary.txt"
1516 if test "x$POSTCLEAN" = x2 ; then
1517 run_clean $dir/$pfxdir.$ex
1518 fi
1519 done
1520
1521 if test -f $DRESULTS"/"genmake_state ; then : ; else
1522 if test -f $dir/$builddir/Makefile ; then
1523 mkOpt=`grep '^# OPTFILE=' $dir/$builddir/Makefile 2>/dev/null | head -1 | sed 's/^# //'`
1524 echo "from '$dir/$builddir/Makefile', extract:" > $DRESULTS/genmake_state
1525 sed -n '/^# executed by:/,+1 p' $dir/$builddir/Makefile >> $DRESULTS/genmake_state
1526 echo " $mkOpt" >> $DRESULTS/genmake_state
1527 if test "x$OPTFILE" = xNONE ; then
1528 eval $mkOpt
1529 sed "/^No \"OPTFILE\" was specified ; genmake2/a\ OPTFILE=${OPTFILE}"\
1530 $SUMMARY > tr_0.tmp_log
1531 RETVAL=$?
1532 if test "x$RETVAL" = x0 ; then rm -f $SUMMARY
1533 cp tr_0.tmp_log $SUMMARY
1534 else rm -f tr_0.tmp_log
1535 fi
1536 fi
1537 gmkLog=$dir/$builddir/genmake.log
1538 grep '^Get compiler version using:' $gmkLog > /dev/null 2>&1
1539 RETVAL=$?
1540 if test "x$RETVAL" = x0 ; then
1541 echo "from '$gmkLog', extract compiler version:" >> $DRESULTS/genmake_state
1542 sed -n '/Get compiler version/,/<-- compiler version/p' $gmkLog \
1543 | grep -v '^... compiler version ' > tr_1.tmp_log
1544 sed -n '1p' tr_1.tmp_log >> $DRESULTS/genmake_state
1545 sed -n '2,/^$/p' tr_1.tmp_log | sed '/^$/d' | sed 's/^./ &/' \
1546 >> $DRESULTS/genmake_state
1547 rm -f tr_1.tmp_log
1548 fi
1549 fi
1550 fi
1551 #postclean $dir/$builddir
1552 if test "x$POSTCLEAN" = x2 ; then
1553 makeclean $dir/$builddir \
1554 && run_clean $dir/$rundir
1555 fi
1556 if test "x$MPI" != x0 -a "x$MPI_MFILE" != x ; then rm -f $LOC_MFILE ; fi
1557
1558 echo "-------------------------------------------------------------------------------"
1559
1560 done
1561
1562 printf "Start time: " >> $SUMMARY
1563 echo "$start_date" >> $SUMMARY
1564 printf "End time: " >> $SUMMARY
1565 date >> $SUMMARY
1566
1567 # If addresses were supplied and mpack built successfully, then try
1568 # to send email using mpack.
1569 if test "x$ADDRESSES" = xNONE -o "x$ADDRESSES" = x ; then
1570 echo "No results email was sent."
1571 else
1572 if test "x$HAVE_MPACK" = xt ; then
1573 tar -cf $DRESULTS".tar" $DRESULTS > /dev/null 2>&1 \
1574 && gzip $DRESULTS".tar" \
1575 && $MPACK -s MITgcm-test -m 3555000 $DRESULTS".tar.gz" $ADDRESSES
1576 RETVAL=$?
1577 if test "x$RETVAL" != x0 ; then
1578 echo
1579 echo "Warning: The tar, gzip, & mpack step failed. Please send email"
1580 echo " to <MITgcm-support@mitgcm.org> for help. You may copy the "
1581 echo " summary of results from the directory \"$DRESULTS\"."
1582 echo
1583 else
1584 echo
1585 echo "An email containing results was sent to the following addresses:"
1586 echo " \"$ADDRESSES\""
1587 echo
1588 test -f $DRESULTS".tar" && rm -f $DRESULTS".tar"
1589 test -f $DRESULTS".tar.gz" && rm -f $DRESULTS".tar.gz"
1590 fi
1591 fi
1592 fi
1593
1594 if test "x$QUICK" = xf -a "x$NORUN" = xf ; then
1595 rm -f tr_cmpnum.c tr_cmpnum
1596 fi
1597
1598 if test "x$CLEANUP" != xt ; then
1599 cat $SUMMARY | sed 's/ \. \. \. \. \. \. \. \. \. \. \. \. //'
1600 if test -e tr_out.txt ; then
1601 mv tr_out.txt tr_out.txt.old
1602 fi
1603 cat $SUMMARY | sed '/^[YN] [YN] [YN] [YN]/ s/ \. //g' > tr_out.txt
1604 fi
1605
1606 if test "x$DELDIR" = xt ; then
1607 rm -rf $DRESULTS
1608 fi

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