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Revision 1.166 - (show annotations) (download)
Fri Aug 19 22:24:26 2011 UTC (12 years, 7 months ago) by jmc
Branch: MAIN
CVS Tags: checkpoint63b
Changes since 1.165: +4 -3 lines
adapt compiler version extraction after changes in genmake2

1 #! /usr/bin/env bash
2 #
3 # $Header: /u/gcmpack/MITgcm/verification/testreport,v 1.165 2011/08/03 18:34:31 jmc Exp $
4 # $Name: $
5 #
6
7 usage()
8 {
9 echo
10 echo "Usage: $0 [OPTIONS]"
11 echo
12 echo "where possible OPTIONS are:"
13 echo " (-help|-h) print usage"
14 echo " (-mth) run multi-threaded (using eedata.mth)"
15 echo " (-mpi) use MPI to compile and run on 2 processors"
16 echo " (-MPI) NUMBER use MPI to compile and run on max NUMBER procs"
17 echo " (-mfile|-mf) STRING MPI: file with list of possible machines to run on"
18 echo " (-fast) use optfile default for compiler flags (no '-ieee')"
19 echo " DEF=off => use IEEE numerics option (if available)"
20 echo " (-devel) use optfile developement flags (if available)"
21 echo " (-gsl) compile with \"-gsl\" flag"
22 echo " (-use_r4|-ur4) if allowed, use real*4 type for '_RS' variable"
23 echo " (-optfile|-of) STRING list of optfiles to use"
24 echo " (-addr|-a) STRING list of email recipients"
25 echo " (DEF=\"\" no email is sent)"
26 echo " (-mpackdir|-mpd) DIR location of the mpack utility"
27 echo " (DEF=\"../tools/mpack-1.6\")"
28 echo " (-tdir|-t) STRING list of group and/or exp. dirs to test"
29 echo " (recognized groups: basic, tutorials)"
30 echo " (DEF=\"\" which test all)"
31 echo " (if list= 'start_from THIS_EXP' then"
32 echo " test THIS_EXP + all the following)"
33 echo " (-skipdir|-skd) STRING list of exp. dirs to skip"
34 echo " (DEF=\"\" which test all)"
35 echo " (-bash|-b) STRING preferred location of a \"bash\" or"
36 echo " Bourne-compatible \"sh\" shell"
37 echo " (DEF=\"\" for \"bash\")"
38 echo " (-adm|-ad) perform an adjoint run"
39 echo " (-oad) perform an OpenAD adjoint run"
40 echo " (-command|-c) STRING command to run"
41 echo " (-makedepend|-md) STRING command to use for \"makedepend\""
42 echo " (-make|-m) STRING command to use for \"make\""
43 echo " (DEF=\"make\")"
44 echo " (-odir) STRING used to build output directory name"
45 echo " (DEF=\"hostname\")"
46 # echo " (-ptracers|-ptr) STRING specify which ptracers to test"
47 # echo " (DEF=\"1 2 3 4 5\")"
48 echo " (-match) NUMBER Matching Criteria (number of digits)"
49 echo " (DEF=\"$MATCH_CRIT\")"
50 echo " (-j) JOBS use \"make -j JOBS\" for parallel builds"
51 echo " (-ef) STRING used as genmake2 \"-extra_flag\" argument"
52 echo " (-clean) *ONLY* run \"make CLEAN\" & clean run-dir"
53 echo " (-norun|-nr) skip the \"runmodel\" stage (stop after make)"
54 echo " (-obj) only produces objects (=norun & no executable)"
55 echo " (-runonly|-ro) *ONLY* run stage (=\"-quick\" without make)"
56 echo " (-quick|-q) same as \"-nogenmake -noclean -nodepend\""
57 echo " (-nogenmake|-ng) skip the genmake stage"
58 echo " (-noclean|-nc) skip the \"make clean\" stage"
59 echo " (-nodepend|-nd) skip the \"make depend\" stage"
60 echo " (-postclean|-pc) after each exp. test, clean build-dir & run-dir"
61 echo " (-deloutp|-do) delete output files after successful run"
62 echo " (-deldir|-dd) on success, delete the output directory"
63 echo " (-ts) provide timing information per timestep"
64 echo " (-papis) provide MFlop/s per timestep using PAPI"
65 echo " (-pcls) provide MFlop/s per timestep using PCL"
66 echo
67 echo "and where STRING can be a whitespace-delimited list"
68 echo "such as:"
69 echo
70 echo " -t 'exp0 exp2 exp3' "
71 echo " -addr='abc@123.com testing@home.org'"
72 echo
73 echo "provided that the expression is properly quoted within the current"
74 echo "shell (note the use of single quotes to protect white space)."
75 echo
76 exit 1
77 }
78
79 # build the mpack utility
80 build_mpack()
81 {
82 printf "building the mpack utility... "
83 MPACK="$MPACKDIR/mpack"
84 if test ! -x $MPACK ; then
85 if test ! -d $MPACKDIR ; then
86 echo
87 echo "Error: can't find \"$MPACKDIR\""
88 echo " are you sure this program is being run in the correct "
89 echo " (that is, \"MITGCM_ROOT\verification\") directory?"
90 echo
91 HAVE_MPACK=f
92 fi
93 if test "x$CC" = x ; then
94 export CC=cc
95 fi
96 printf "building mpack (using CC=$CC)... "
97 ( cd $MPACKDIR && ./configure && $MAKE ) > tr_build_mpack.out 2>&1
98 RETVAL=$?
99 if test "x$RETVAL" != x0 ; then
100 echo
101 echo "Error building the mpack tools at: $MPACK_DIR"
102 echo
103 HAVE_MPACK=f
104 else
105 rm -f tr_build_mpack.out
106 HAVE_MPACK=t
107 echo "done"
108 fi
109 else
110 HAVE_MPACK=t
111 echo "already exist"
112 fi
113 }
114
115 testoutput_var()
116 {
117 # testoutput_var dir s1 label subdir reference_output
118 #
119 # compares 1 variable output selected from file $dir/$subdir/$OUTPUTFILE
120 # with same output from reference file $dir/results/$reference_output
121 # using search strings s1 and text label
122
123 if [ $debug -gt 0 ]; then
124 echo testoutput_var: grep "$2" $1/$4/$OUTPUTFILE 1>&2
125 fi
126 if [ -r $1/$4/$OUTPUTFILE ]; then
127 grep "$2" $1/$4/$OUTPUTFILE | sed 's/.*=//' | cat -n > tmp1.txt
128 lncntA=`wc -l tmp1.txt | awk '{print $1}' `
129 if [ $lncntA -lt 2 ]; then
130 if [ $verbose -gt 0 ]; then
131 echo Not enough lines of output when searching for "$2" 1>&2
132 fi
133 return 99
134 fi
135 else
136 echo testoutput_var: $OUTPUTFILE from model run was not readable 1>&2
137 return 99
138 fi
139 if [ $debug -gt 0 ]; then
140 echo testoutput_var: grep "$2" $1/results/$5 1>&2
141 fi
142 grep "$2" $1/results/$5 | sed 's/.*=//' | cat -n > tmp2.txt
143 lncntB=`wc -l tmp2.txt | awk '{print $1}' `
144 if [ $lncntB -lt 2 ]; then
145 if [ $verbose -gt 0 ]; then
146 echo Not enough lines of output when searching for "$2" 1>&2
147 fi
148 return 99
149 fi
150 if [ $lncntA -ne $lncntB ]; then
151 if [ $verbose -gt 0 ]; then
152 echo Not same Nb of lines when searching for "$2" ":" $lncntA $lncntB 1>&2
153 fi
154 return 99
155 fi
156 has_nan=`cat tmp1.txt | grep -i nan | wc -l`
157 if [ $has_nan -gt 0 ] ; then
158 echo testoutput_var: $OUTPUTFILE contains $has_nan NaN values 1>&2
159 return 99
160 fi
161 has_inf=`cat tmp1.txt | grep -i inf | wc -l`
162 if [ $has_inf -gt 0 ] ; then
163 echo testoutput_var: $OUTPUTFILE contains $has_inf Inf values 1>&2
164 return 99
165 fi
166 if [ $debug -gt 0 ]; then
167 echo testoutput_var: join tmp1.txt tmp2.txt 1>&2
168 fi
169 join tmp1.txt tmp2.txt | awk '{print $1 " " $2 " " $3}' > tmp3.txt
170 if [ $debug -gt 0 ]; then
171 echo testoutput_var: compare_lines 1>&2
172 fi
173 if [ $verbose -gt 1 ]; then
174 cat tmp3.txt 1>&2
175 fi
176 echo "-1" >> tmp3.txt
177 # On the SGI O3K (*not* the O2K), "cat -n" inserts a ":" after the line number
178 cat tmp3.txt | sed -e 's|:||g' > tmp4.txt
179 digits_of_similarity=`./tr_cmpnum < tmp4.txt`
180 if [ $digits_of_similarity -eq 99 ]; then
181 if [ $verbose -gt 0 ]; then
182 echo testoutput_var: No comparison was available for \"$3\" 1>&2
183 fi
184 digits_of_similarity=99
185 else
186 if [ $verbose -gt 0 ]; then
187 echo There were $digits_of_similarity decimal places of similarity for \"$3\" 1>&2
188 fi
189 fi
190 rm -f tmp1.txt tmp2.txt tmp3.txt tmp4.txt
191
192 return $digits_of_similarity
193 }
194
195 testoutput_run()
196 {
197 # testoutput_run directory subdir reference_output
198 #
199 # test output from 1 run in "directory"
200 # --> same processing for adjoint & forward test
201 # default list of output variables to be checked:
202 # 1rst : main variable used to decide if it pass or FAIL
203 # others : number of matching digits to be printed in summary.txt
204 listChk=$DEF_CHECK_LIST
205 # load experiment-specific list from file "tr_checklist" (if it exist)
206 if test -r $1/$2/tr_checklist ; then listChk=`cat $1/$2/tr_checklist` ; fi
207 sVar=`echo $listChk | awk '{print $1}'`
208 # remove 1rst var and expand the list: + => min max mean s.d
209 listVar=`echo $listChk | sed 's/ [a-zA-Z0-9]*+/&mn &mx &av &sd/g' \
210 | sed 's/+//g' | sed "s/^$sVar//"`
211 if [ $debug -gt 0 ]; then echo "testoutput_run: listVar(I)='$listVar'" 1>&2 ; fi
212 # check for ptracer output in reference_output file :
213 outpref=$1/results/$3
214 ptr_mon="trcstat_ptracerXX_min trcstat_ptracerXX_max"
215 ptr_mon="$ptr_mon trcstat_ptracerXX_mean trcstat_ptracerXX_sd"
216 for ii in $PTRACERS_NUM ; do
217 ptrfound=0
218 for jj in $ptr_mon ; do
219 name=`eval "echo $jj | sed -e 's|XX|0"$ii"|g'"`
220 tst=`grep $name $outpref | wc -l | awk '{print $1}'`
221 if test ! "x$tst" = x0 ; then ptrfound=1 ; fi
222 done
223 if test $ptrfound = '1' ; then
224 eval "HAVE_PTR0"$ii"=t"
225 else
226 eval "HAVE_PTR0"$ii"=f"
227 if test "x$ADM" = x -a "x$OADM" = x; then
228 # remove this ptr from the list of output variable to check
229 # echo "-- ptr test=" $tst "number of var=" `echo $listVar | awk '{print NF}'` 1>&2
230 listVar=`echo "$listVar" | sed "s/ pt$ii..//g"`
231 fi
232 fi
233 # eval 'echo "HAVE_PTR0'$ii' = $HAVE_PTR0'$ii'"' 1>&2
234 done
235 tst=`echo $sVar $listVar | awk '{ for(i=2;i<=NF;i++){if($i==$1)t+=1}; print t }'`
236 if test $tst != 1 ; then
237 if test $tst = 0 ; then echo "==> WARNING: selected var >$sVar< not found" 1>&2
238 else echo "==> WARNING: found selected var >$sVar< $tst times" 1>&2 ; fi
239 echo "==> WARNING: in checked list:" $listVar 1>&2
240 #- put it back once:
241 listVar=" $sVar "`echo "$listVar " | sed "s/ $sVar / /g"`
242 fi
243 if [ $debug -gt 0 ]; then echo "testoutput_run: listVar(M)='$listVar'" 1>&2 ; fi
244 echo "listVar='$listVar'" >> $locDIR"/summary.txt"
245 #---
246 allargs=""
247 for xx in $listVar
248 do
249 case $xx in
250 'PS') if [ $debug -gt 0 ]
251 then echo testoutput_run: testoutput_var $1 cg2d_init_res 1>&2 ; fi
252 testoutput_var $1 "cg2d_init_res" "Press. Solver (cg2d)" $2 $3; yy=$?
253 if [ $debug -gt 0 ] ; then echo testoutput_run: cg2dres=$yy 1>&2 ; fi ;;
254 'Cost') testoutput_var $1 "ADM precision_derivative_cost" "ADM Cost" $2 $3; yy=$? ;;
255 'Grad') testoutput_var $1 "ADM precision_derivative_grad" "ADM Grad" $2 $3; yy=$? ;;
256 'Tmn') testoutput_var $1 "dynstat_theta_min" "Theta minimum" $2 $3; yy=$? ;;
257 'Tmx') testoutput_var $1 "dynstat_theta_max" "Theta maximum" $2 $3; yy=$? ;;
258 'Tav') testoutput_var $1 "dynstat_theta_mean" "Theta mean" $2 $3; yy=$? ;;
259 'Tsd') testoutput_var $1 "dynstat_theta_sd" "Theta Std.Dev" $2 $3; yy=$? ;;
260 'Smn') testoutput_var $1 "dynstat_salt_min" "Salt minimum" $2 $3; yy=$? ;;
261 'Smx') testoutput_var $1 "dynstat_salt_max" "Salt maximum" $2 $3; yy=$? ;;
262 'Sav') testoutput_var $1 "dynstat_salt_mean" "Salt mean" $2 $3; yy=$? ;;
263 'Ssd') testoutput_var $1 "dynstat_salt_sd" "Salt Std.Dev" $2 $3; yy=$? ;;
264 'Umn') testoutput_var $1 "dynstat_uvel_min" "U minimum" $2 $3; yy=$? ;;
265 'Umx') testoutput_var $1 "dynstat_uvel_max" "U maximum" $2 $3; yy=$? ;;
266 'Uav') testoutput_var $1 "dynstat_uvel_mean" "U mean" $2 $3; yy=$? ;;
267 'Usd') testoutput_var $1 "dynstat_uvel_sd" "U Std.Dev" $2 $3; yy=$? ;;
268 'Vmn') testoutput_var $1 "dynstat_vvel_min" "V minimum" $2 $3; yy=$? ;;
269 'Vmx') testoutput_var $1 "dynstat_vvel_max" "V maximum" $2 $3; yy=$? ;;
270 'Vav') testoutput_var $1 "dynstat_vvel_mean" "V mean" $2 $3; yy=$? ;;
271 'Vsd') testoutput_var $1 "dynstat_vvel_sd" "V Std.Dev" $2 $3; yy=$? ;;
272 'pt1mn'|'pt2mn'|'pt3mn'|'pt4mn'|'pt5mn') ii=`echo $xx | sed 's/pt//' | sed 's/..$//'`
273 testoutput_var $1 "trcstat_ptracer0"$ii"_min" "p0"$ii"_min" $2 $3; yy=$? ;;
274 'pt1mx'|'pt2mx'|'pt3mx'|'pt4mx'|'pt5mx') ii=`echo $xx | sed 's/pt//' | sed 's/..$//'`
275 testoutput_var $1 "trcstat_ptracer0"$ii"_max" "p0"$ii"_max" $2 $3; yy=$? ;;
276 'pt1av'|'pt2av'|'pt3av'|'pt4av'|'pt5av') ii=`echo $xx | sed 's/pt//' | sed 's/..$//'`
277 testoutput_var $1 "trcstat_ptracer0"$ii"_mean" "p0"$ii"_mean" $2 $3; yy=$? ;;
278 'pt1sd'|'pt2sd'|'pt3sd'|'pt4sd'|'pt5sd') ii=`echo $xx | sed 's/pt//' | sed 's/..$//'`
279 testoutput_var $1 "trcstat_ptracer0"$ii"_sd" "p0"$ii"_StDv" $2 $3; yy=$? ;;
280 'Qntmn') testoutput_var $1 "forcing_qnet_min" "Qnet minimum" $2 $3; yy=$? ;;
281 'Qntmx') testoutput_var $1 "forcing_qnet_max" "Qnet maximum" $2 $3; yy=$? ;;
282 'Qntav') testoutput_var $1 "forcing_qnet_mean" "Qnet mean" $2 $3; yy=$? ;;
283 'Qntsd') testoutput_var $1 "forcing_qnet_sd" "Qnet Std.Dev" $2 $3; yy=$? ;;
284 'aSImn') testoutput_var $1 "seaice_area_min" "SIce Area min" $2 $3; yy=$? ;;
285 'aSImx') testoutput_var $1 "seaice_area_max" "SIce Area max" $2 $3; yy=$? ;;
286 'aSIav') testoutput_var $1 "seaice_area_mean" "SIce Area mean" $2 $3; yy=$? ;;
287 'aSIsd') testoutput_var $1 "seaice_area_sd" "SIce Area StDv" $2 $3; yy=$? ;;
288 'hSImn') testoutput_var $1 "seaice_heff_min" "SIce Heff min" $2 $3; yy=$? ;;
289 'hSImx') testoutput_var $1 "seaice_heff_max" "SIce Heff max" $2 $3; yy=$? ;;
290 'hSIav') testoutput_var $1 "seaice_heff_mean" "SIce Heff mean" $2 $3; yy=$? ;;
291 'hSIsd') testoutput_var $1 "seaice_heff_sd" "SIce Heff StDv" $2 $3; yy=$? ;;
292 'AthSiG') testoutput_var $1 "thSI_Ice_Area_G" "thSIc Area Global" $2 $3; yy=$? ;;
293 'AthSiS') testoutput_var $1 "thSI_Ice_Area_S" "thSIc Area South" $2 $3; yy=$? ;;
294 'AthSiN') testoutput_var $1 "thSI_Ice_Area_N" "thSIc Area North" $2 $3; yy=$? ;;
295 'HthSiG') testoutput_var $1 "thSI_IceH_ave_G" "thSIc H Global" $2 $3; yy=$? ;;
296 'HthSiS') testoutput_var $1 "thSI_IceH_ave_S" "thSIc H South" $2 $3; yy=$? ;;
297 'HthSiN') testoutput_var $1 "thSI_IceH_ave_N" "thSIc H North" $2 $3; yy=$? ;;
298 *) yy=99; echo "WARNING: asking for var=$xx : not recognized !" 1>&2 ;;
299 esac
300 if test $xx = $sVar
301 then allargs="$allargs > $yy <"
302 else allargs="$allargs $yy"
303 fi
304 done
305
306 nbVar=`echo $listVar | awk '{print NF}'`
307 if [ $nbVar -lt $LEN_CHECK_LIST ] ; then
308 #-- fill line (up to standard length) with dot:
309 adNul=`expr $LEN_CHECK_LIST - $nbVar | awk '{for(i=1;i<=$1;i++){print "."}}'`
310 echo $allargs $adNul
311 else
312 echo $allargs
313 fi
314 # <-- same processing for adjoint & forward test
315 }
316
317 genmakemodel()
318 {
319 # genmakemodel directory
320 if test "x$NOGENMAKE" = xt ; then
321 echo "genmake skipped!"
322 else
323 if test "x$BASH" = x ; then
324 GENMAKE2="../../../tools/genmake2"
325 else
326 GENMAKE2="$BASH ../../../tools/genmake2 -bash $BASH"
327 fi
328 (
329 cd $1;
330 command="$GENMAKE2 -ds -m $MAKE"
331 if test "x$MKDEPEND" != x ; then
332 command="$command -makedepend=$MKDEPEND"
333 fi
334 if test "x$ADM" = xt ; then
335 command="$command --mods=../code_ad"
336 elif test "x$OADM" = xt ; then
337 command="$command -adof ../../../tools/adjoint_options/adjoint_oad -mods '../code_oad ../../OpenAD/code_oad_all'"
338 else
339 command="$command -mods=../code"
340 fi
341 if test "x$OPTFILE" != xNONE ; then
342 command="$command -optfile=$OPTFILE"
343 fi
344 if test $OptLev = 1 ; then
345 command="$command -ieee"
346 fi
347 if test $OptLev = 0 ; then
348 command="$command -devel"
349 fi
350 if test "x$GSL" = xt ; then
351 command="$command -gsl"
352 fi
353 if test "x$MPI" != x0 ; then
354 command="$command -mpi"
355 fi
356 if test "x$MULTI_THREAD" = xt ; then
357 #- run multi-threaded using OpenMP:
358 command="$command -omp"
359 fi
360 if test "x$USE_R4" = xt ; then
361 command="$command -use_r4"
362 fi
363 if test "x$EXTRFLG" != x ; then
364 command="$command -extra_flag $EXTRFLG"
365 fi
366 if test "x$TS" = xt ; then
367 command="$command -ts"
368 fi
369 if test "x$PAPIS" = xt ; then
370 command="$command -papis"
371 else
372 if test "x$PCLS" = xt ; then
373 command="$command -pcls"
374 fi
375 fi
376 printf 'genmake ... '
377 eval $command > genmake.tr_log 2>&1
378 RETVAL=$?
379 # Reduce the size of the testing emails!
380 head -100 Makefile > $CDIR/Makefile_head
381 if test "x$RETVAL" != x0 ; then
382 tail genmake.tr_log
383 echo "genmakemodel: genmake failed"
384 cp genmake.log genmake_* genmake.tr_log $CDIR
385 return 1
386 else
387 echo "successful"
388 fi
389 )
390 fi
391 }
392
393 makeclean()
394 {
395 # makeclean directory
396 if test "x$NODEPEND" = xf ; then rm -f $1/make.tr_log ; fi
397 if test "x$NOCLEAN" = xt ; then
398 echo "make Clean skipped!"
399 else
400 (
401 cd $1;
402 #if test -e $OUTPUTFILE ; then rm -f $OUTPUTFILE ; fi
403 if test -r Makefile ; then
404 printf 'clean build-dir: make Clean ... '
405 $MAKE Clean >> make.tr_log 2>&1
406 RETVAL=$?
407 if test "x$RETVAL" != x0 ; then
408 tail make.tr_log
409 echo "makeclean: \"make Clean\" failed"
410 cp make.tr_log genmake.log genmake.tr_log $CDIR
411 return 1
412 fi
413 echo successful
414 else
415 echo ''
416 fi
417 exit 0
418 )
419 fi
420 }
421
422 run_clean()
423 {
424 # run_clean directory
425 if test "x$NOCLEAN" = xt ; then
426 echo "run_clean skipped!"
427 else
428 (
429 cd $1;
430 printf 'clean run-dir ... '
431 # part of what is done after "make clean" when doing "make CLEAN"
432 find . -name "*.meta" -exec rm {} \;
433 find . -name "*.data" -exec rm {} \;
434 find . -name "fort.*" -exec rm {} \;
435 find . -type l -exec rm {} \;
436 #- should remove executable only if sym-link (alredy done above)
437 rm -f $RUNLOG *.txt STD* *diagnostics.log datetime
438 rm -rf mnc_test_*
439 rm -f *_MIT_CE_000.opt0000 costfunction*0000
440 echo successful
441 exit 0
442 )
443 fi
444 }
445
446 makedependmodel()
447 {
448 # makedependmodel directory
449 if test "x$NODEPEND" = xt ; then
450 echo "make depend skipped!"
451 else
452 (
453 cd $1;
454 printf 'make depend ... '
455 $MAKE depend >> make.tr_log 2>&1
456 RETVAL=$?
457 if test "x$RETVAL" != x0 ; then
458 tail make.tr_log
459 echo "makedependmodel: make depend failed"
460 cp make.tr_log genmake.log genmake.tr_log $CDIR
461 return 1
462 else
463 echo successful
464 fi
465 )
466 fi
467 }
468
469 makemodel()
470 {
471 # makemodel directory
472 (
473 mk_fail=0
474 if test "x$NOMAKE" = xt ; then
475 cd $1;
476 if test -x $EXECUTABLE ; then
477 echo "make skipped!"
478 else
479 echo "no executable!"
480 mk_fail=3
481 fi
482 else
483 cd $1;
484 if test -r Makefile ; then
485 printf 'make ... '
486 if test "x$ADM" = xt ; then
487 $MAKE adall >> make.tr_log 2>&1
488 elif test "x$OADM" = xt ; then
489 $MAKE adAll >> make.tr_log 2>&1
490 else
491 if test "x$JOBS" = x ; then
492 $MAKE $TARG >> make.tr_log 2>&1
493 else
494 $MAKE -j $JOBS $TARG >> make.tr_log 2>&1
495 fi
496 fi
497 RETVAL=$?
498 if test "x$RETVAL" != x0 ; then
499 tail make.tr_log
500 echo failed
501 cp genmake.log genmake.tr_log $CDIR
502 tail -$NBLINES_MKLOG make.tr_log > $CDIR"/make.tr_log_tail"
503 rm -f $EXECUTABLE
504 mk_fail=1
505 else
506 echo successful
507 fi
508 else
509 echo "no Makefile !"
510 mk_fail=2
511 fi
512 fi
513 if test "x$ADM" = xt -a -f taf_ad.log ; then
514 head -1 taf_ad.log >> $CDIR"/summary.txt"
515 nerr=`grep -c 'TAF *.* ERROR ' taf_ad.log`
516 nwar=`grep -c 'TAF RECOMPUTATION *.* WARNING ' taf_ad.log`
517 echo " TAF reports $nerr Errors and $nwar Recomputation Warnings" \
518 >> $CDIR"/summary.txt"
519 fi
520 if test $mk_fail != 0 ; then return $mk_fail ; fi
521 )
522 }
523
524 mk_mpi_size()
525 {
526 # mk_mpi_size input_file output_file proc_Nb prefer_to_split_X
527 #
528 # make new SIZE.h (=output_file) from SIZE.h_mpi (=input_file)
529 # for an MPI build with no more than proc_Nb processors ;
530 # return the effective number of processors.
531
532 inp=$1
533 out=$2
534 np=$3
535 dirX=$4
536 tmp=TTT.$$
537
538 px=`grep "^ & *nPx *=" $inp | sed "s/^ & *nPx *= *//" | sed 's/, *$//'`
539 py=`grep "^ & *nPy *=" $inp | sed "s/^ & *nPy *= *//" | sed 's/, *$//'`
540 sx=`grep "^ & *nSx *=" $inp | sed "s/^ & *nSx *= *//" | sed 's/, *$//'`
541 sy=`grep "^ & *nSy *=" $inp | sed "s/^ & *nSy *= *//" | sed 's/, *$//'`
542
543 #- find the largest divisor of input_file proc Nb, but not larger than $np
544 pp=0
545 i=1
546 while [ $i -le $px ] ; do
547 if [ `expr $px % $i` -eq 0 ] ; then
548 j=1
549 while [ $j -le $py ] ; do
550 if [ `expr $py % $j` -eq 0 ] ; then
551 ij=`expr $i \* $j`
552 if [ $ij -gt $pp ] ; then
553 flag=1
554 elif [ $ij -eq $pp ] ; then
555 flag=$dirX
556 else
557 flag=0
558 fi
559 if test $flag = 1 ; then
560 if [ $ij -le $np ] ; then
561 ix=$i ; jy=$j ; pp=$ij
562 #echo " ix,jy= $ix,$jy"
563 fi
564 fi
565 fi
566 j=`expr $j + 1`
567 done
568 fi
569 i=`expr $i + 1`
570 done
571
572 #- create new SIZE.h type file:
573 sx=`expr $sx \* $px / $ix`
574 sy=`expr $sy \* $py / $jy`
575 if [ $verbose -gt 1 ]; then
576 echo " px,py,np= $px,$py,$np : New MPI size: px,py= $ix,$jy : sx,sy= $sx,$sy"
577 fi
578 sed "/^ \& *nPx *=/s/[0-9]*,/$ix,/" $inp > $tmp
579 sed "/^ \& *nPy *=/s/[0-9]*,/$jy,/" $tmp > $out
580 sed "/^ \& *nSx *=/s/[0-9]*,/$sx,/" $out > $tmp
581 sed "/^ \& *nSy *=/s/[0-9]*,/$sy,/" $tmp > $out
582 rm -f $tmp
583 return $pp
584 }
585
586 symlink_mpifiles()
587 {
588 # Put special links so that MPI specific files are used
589 # This MUST be invoked between makeclean and makelinks because
590 # the Makefile will link to non-mpi files by default
591
592 dir=$1
593 code_dir=$2
594 build_dir=$dir/$3
595
596 # These are files that should replace their counter-part when using -mpi
597 MPI_FILES=`(cd $dir/$code_dir; find . -name "*_mpi" -print)`
598
599 for ii in $MPI_FILES ; do
600 i=`echo $ii | sed 's:^\./::'`
601 name=`echo $i | sed 's:_mpi::'`
602 file="../$code_dir/$i"
603 if test $name = 'SIZE.h' ; then file="SIZE.h.mpi" ; fi
604
605 # Is this an MPI run?
606 if test "x$MPI" = x0 ; then
607 # NO: We undo any _mpi symbolically linked files
608 if test -L $build_dir/$name ; then
609 ( cd $build_dir ; cmp $name $file > /dev/null 2>&1 )
610 RETVAL=$?
611 if test "x$RETVAL" = x0 ; then
612 if [ $verbose -gt 1 ]; then
613 echo " Un-linking $name from ../$code_dir" ; fi
614 rm -f $build_dir/$name
615 fi
616 fi
617 else
618 # YES: We symbolically link these files to the build
619 # dir so long as there is no real file in place
620 ( cd $build_dir ; cmp $name $file > /dev/null 2>&1 )
621 RETVAL=$?
622 if [ $verbose -gt 1 ]; then echo " cmp $name $file returns: $RETVAL" ; fi
623 if test "x$RETVAL" != x0 ; then
624 if test -h $build_dir/$name ; then rm -f $build_dir/$name ; fi
625 if test ! -r $build_dir/$name ; then
626 if [ $verbose -gt 1 ]; then echo " Linking $name to $file" ; fi
627 (cd $build_dir; ln -sf $file $name)
628 fi
629 fi
630 fi
631 done
632 }
633
634 linkdata()
635 {
636 # linkdata run_dir input_dir_1 input_dir_2 ...
637 #
638 # symbolically link data files to run directory
639 if test -d $1 ; then
640 (
641 cd $1 ; shift
642 echo 'linkdata from dirs:' $*
643 inpMPI=`(cd ../$1 ; find . -name "*.mpi" -print | sed 's:^\./::')`
644 for xx in $inpMPI ; do
645 if test -r "../"$1"/"$xx ; then
646 # found 1 _mpi sfx file in 1rst input dir and it is readable
647 yy=`echo $xx | sed 's:\.mpi$::'`
648 if test "x$MPI" = "x0" ; then
649 # not mpi test: remove symbolic link
650 if test -h $yy ; then rm -f $yy ; fi
651 else
652 # mpi test: remove symbolic link & link .mpi sfx file
653 if test -h $yy ; then rm -f $yy ; fi
654 if test ! -r $yy ; then
655 ln -sf "../"$1"/"$xx $yy ;
656 printf " $xx" 1>&2
657 fi
658 fi
659 fi
660 done
661 if test -r "../"$1"/eedata.mth" ; then
662 # found eedata.mth in 1rst input dir and it is readable
663 if test "x$MULTI_THREAD" = "xt" ; then
664 # multi-threaded test: remove symbolic link & link eedata.mth
665 if test -h eedata ; then rm -f eedata ; fi
666 if test ! -r eedata ; then
667 ln -sf "../"$1"/eedata.mth" eedata ;
668 printf ' eedata.mth' 1>&2
669 fi
670 else
671 # not multi-threaded test: remove eedata symbolic link
672 if test -h eedata ; then rm -f eedata ; fi
673 fi
674 fi
675 prevDir='NONE'
676 for ldir in $* ; do
677 if test -d "../"$ldir -a $ldir != $prevDir ; then
678 printf " ldir=${ldir}:" 1>&2
679 files=`( cd "../"$ldir ; ls -1 | grep -v CVS )`
680 for i in $files ; do
681 if test ! -d "../"$ldir/$i ; then
682 if test ! -r $i ; then
683 printf ' '$i 1>&2
684 ln -sf "../"$ldir"/"$i $i
685 fi
686 fi
687 done
688 printf ' ;' 1>&2
689 if test -x "../"$ldir"/"prepare_run ; then
690 "../"$ldir"/"prepare_run 1>&2
691 else
692 echo '' 1>&2
693 fi
694 fi
695 prevDir=$ldir
696 done
697 )
698 fi
699 }
700
701 runmodel()
702 {
703 # runmodel directory
704 #
705 # runs $COMMAND in "directory"
706 # (where "$COMMAND" is relative to "directory")
707 (
708 cd $1
709 printf 'runmodel in %s ... ' $1
710 if test "x$MPI" != x0 ; then
711 #- adjust the MPI run command with the right number of Procs
712 #echo '' ; echo " COMMAND='$COMMAND'"
713 COMMAND=`echo $COMMAND | sed "s/ TR_NPROC / $LOC_NPROC /"`
714 if test "x$MPI_MFILE" != x ; then
715 COMMAND=`echo $COMMAND | sed "s/ TR_MFILE / ..\/..\/$LOC_MFILE /"`
716 fi
717 #echo " COMMAND='$COMMAND'"
718 fi
719 if test -L $EXECUTABLE ; then
720 if test -x "../"$builddir"/"$EXECUTABLE ; then
721 cmp $EXECUTABLE "../"$builddir"/"$EXECUTABLE > /dev/null 2>&1
722 outD=$? ; if test "x$outD" != x0 ; then rm -f $EXECUTABLE ; fi
723 else rm -f $EXECUTABLE
724 fi
725 fi
726 if test ! -x $EXECUTABLE -a -x "../"$builddir"/"$EXECUTABLE ; then
727 echo " link" $EXECUTABLE "from dir ../"$builddir > run.log_tmp
728 ln -sf "../"$builddir"/"$EXECUTABLE .
729 fi
730 if test ! -x $EXECUTABLE ; then
731 rm -f $RUNLOG ; touch $RUNLOG
732 if test -f run.log_tmp ; then cat run.log_tmp >> $RUNLOG ; fi
733 echo " no executable:" $EXECUTABLE >> $RUNLOG
734 RETVAL=8
735 ENDVAL=-1
736 else
737 if test ! -f $OUTPUTFILE -o $OUTPUTFILE -ot $EXECUTABLE ; then
738 # output do not exist or is older than executable:
739 rm -f $OUTPUTFILE $RUNLOG ; touch $RUNLOG
740 if test -f run.log_tmp ; then cat run.log_tmp >> $RUNLOG ; fi
741 ( eval $COMMAND ) >> $RUNLOG 2>&1
742 RETVAL=$?
743 ENDVAL=`tail $OUTPUTFILE | grep -c 'PROGRAM MAIN: Execution ended Normally'`
744 if [ $POSTCLEAN -eq 1 -a $ENDVAL -gt 0 ] ; then
745 find . -name "*.meta" -exec rm {} \;
746 find . -name "*.data" -exec rm {} \;
747 rm -rf mnc_test_*
748 fi
749 else
750 RETVAL=0
751 ENDVAL=`tail $OUTPUTFILE | grep -c 'PROGRAM MAIN: Execution ended Normally'`
752 touch $RUNLOG
753 if test -f run.log_tmp ; then cat run.log_tmp >> $RUNLOG ; fi
754 echo "---------->> $OUTPUTFILE is up to date " >> $RUNLOG 2>&1
755 fi
756 fi
757 rm -f run.log_tmp
758 #- in all cases where OutputFile exists, report SIZE (and AD time)
759 if test -f $OUTPUTFILE ; then
760 grep '(PID\.TID 0000\.0001) n.. =' $OUTPUTFILE \
761 | sed 's/(PID.TID 0000.0001) //' >> $CDIR"/summary.txt"
762 if test "x$ADM" = xt ; then
763 grep -A3 'Seconds in section "ALL' $OUTPUTFILE >> $CDIR"/summary.txt"
764 fi
765 fi
766 if test -s STDERR.0000 ; then cp STDERR.0000 $CDIR"/STDERR.0000" ; fi
767 if [ $RETVAL -eq 0 -a $ENDVAL -gt 0 ] ; then
768 echo successful
769 printf '=> output from running in %s :\n' $1 1>&2
770 tail $RUNLOG | sed 's/^.*/> &/g' 1>&2
771 return 0
772 elif [ $RETVAL -ne 0 -a $ENDVAL -gt 0 ] ; then
773 #-- for some weird cases (run is finihed but with error code)
774 echo 'finished with error (run:' $RETVAL ' end:' $ENDVAL ')'
775 printf '=> output from running in %s :\n' $1 1>&2
776 tail $RUNLOG | sed 's/^.*/> &/g' 1>&2
777 return 0
778 else
779 echo 'failed (run:' $RETVAL ' end:' $ENDVAL ')'
780 printf '=> output from running in %s :\n' $1 1>&2
781 tail $RUNLOG | sed 's/^.*/> &/g' 1>&2
782 cp $RUNLOG $CDIR"/"$RUNLOG
783 return 1
784 fi
785 )
786 }
787
788 createcodelet()
789 {
790 # create codelet for comparing model output
791
792 printf "creating the comparison code (using CC=$CC)... "
793 cat > tr_cmpnum.c <<EOF
794 #include <stdio.h>
795 #include <math.h>
796 int main( int argc, char** argv ) {
797 int linnum,cmplin,best,lncnt;
798 double a,b,abave,relerr;
799 best = -22;
800 lncnt = 0;
801 while( 1 & ( (lncnt+=1) < 999 ) ) {
802 scanf("%d", &linnum);
803 if (linnum == -1) break;
804 scanf("%lf", &a); scanf("%lf", &b);
805 abave = 0.5*(fabs(a)+fabs(b));
806 if ( abave == abave ) {
807 if (abave > 0.0) {
808 relerr=fabs(a-b)/abave;
809 if (relerr > 0.0) { cmplin = (int)rint(log10(relerr)); }
810 else { cmplin = -16 ; }
811 best = (best > cmplin) ? best : cmplin; }
812 else { cmplin = -22 ; }
813 /* printf("%d ; %lf ; %lf\n",cmplin,a,b); */
814 }
815 else {
816 /* printf("%lf ; %lf ; %lf\n",abave,a,b); */
817 break; }
818 }
819 if (lncnt == 999) best=-29;
820 if (linnum != -1) best=-99;
821 printf("%d\n", -best);
822 return 0;
823 }
824 EOF
825 $CC -o tr_cmpnum tr_cmpnum.c -lm
826
827 if [ -x ./tr_cmpnum ]; then
828 echo "OK"
829 return 0
830 else
831 echo
832 echo "ERROR: failed to compile comparison code -- please specify"
833 echo " a C compiler using the CC environment variable."
834 exit 1
835 fi
836 }
837
838 formatresults()
839 {
840 # formatresults expt genmake depend make run results*
841
842 nm=$1
843 printf '%s %s %s %s' $2 $3 $4 $5
844 shift; shift; shift; shift; shift;
845 listPrt=$@
846 listRes=`echo $listPrt | sed 's/>//' | sed 's/<//'`
847 xx=`echo $listPrt | sed 's/.*>//' | sed 's/<.*//' | awk '{print $1}'`
848 printf '%3s' $listPrt
849 # line below does not work on hp-ux_ia64 : do those substitutions later on
850 # printf '%3s' $listPrt | sed 's/ 99/ --/g' | sed 's/ > />/' | sed 's/ < /</'
851
852 if [ $xx = '..' ]; then
853 printf ' N/O '
854 elif [ $xx = '--' ]; then
855 printf ' N/O '
856 elif [ $xx = 99 ]; then
857 printf ' N/O '
858 else
859 if [ $xx -ge $MATCH_CRIT ]; then
860 printf ' pass'
861 else
862 printf ' FAIL'
863 fi
864 fi
865 printf ' %s' $nm
866 printf '\n'
867
868 }
869
870 scandirs()
871 {
872 if [ $# -eq 1 ]; then
873 for arg in * ; do
874 test -f $arg/$1 && echo $arg
875 done
876 else
877 echo $*
878 fi
879 }
880
881
882 check_eedata()
883 {
884 # check_eedata eedata size.h
885 if [ $# -eq 2 ] ; then
886 if test -f $1 -a -f $2 ; then
887 nx=`grep "^ *nTx *=" $1 | tail -1 | sed 's/^ *nTx *= *//' | sed "s/, *$//"`
888 sx=`grep "^ & *nSx *=" $2 | sed "s/^ & *nSx *=//" | sed 's/, *$//'`
889 if test "x$nx" = x ; then
890 rx=10
891 else
892 rx=`expr $sx % $nx`
893 fi
894 ny=`grep "^ *nTy *=" $1 | tail -1 | sed 's/^ *nTy *= *//' | sed "s/, *$//"`
895 sy=`grep "^ & *nSy *=" $2 | sed "s/^ & *nSy *=//" | sed 's/, *$//'`
896 if test "x$ny" = x ; then
897 ry=20
898 else
899 ry=`expr $sy % $ny`
900 fi
901 echo `expr $rx + $ry`
902 else
903 echo '-1'
904 fi
905 elif [ $# -eq 1 ] ; then
906 if test -f $1 ; then
907 nx=`grep "^ *nTx *=" $1 | tail -1 | sed 's/^ *nTx *= *//' | sed "s/, *$//"`
908 if test "x$nx" = x ; then nx=1 ; fi
909 ny=`grep "^ *nTy *=" $1 | tail -1 | sed 's/^ *nTy *= *//' | sed "s/, *$//"`
910 if test "x$ny" = x ; then ny=1 ; fi
911 #echo $nx $ny
912 echo $nx
913 else
914 echo '-1'
915 fi
916 else
917 echo '-2'
918 fi
919
920 }
921
922 ###############################################################################
923
924
925 # Default properties
926 debug=0
927 verbose=1
928 NBLINES_MKLOG=16000
929
930 IEEE=true
931 if test "x$MITGCM_IEEE" != x ; then
932 IEEE=$MITGCM_IEEE
933 fi
934 OptLev=1
935 GSL=f
936
937 CLEANUP=f
938 NORUN=f
939 QUICK=f
940 NOMAKE=f
941 NOGENMAKE=f
942 NOCLEAN=f
943 NODEPEND=f
944 POSTCLEAN=0
945
946 BASH=
947 OPTFILE=NONE
948 ADDRESSES=
949 TESTDIRS=
950 SKIPDIRS=
951 MPACKDIR="../tools/mpack-1.6"
952 HAVE_MPACK=
953 MPACK=
954 COMMAND=
955 MKDEPEND=
956 if test "x$MAKE" = x ; then
957 MAKE=make
958 fi
959 if test "x$CC" = x ; then
960 CC=cc
961 fi
962 JOBS=
963 TARG=
964 MPI=0
965 MPI_MFILE=
966 MULTI_THREAD=f
967 OUTDIR=
968 DELDIR=
969 USE_R4=
970 EXTRFLG=
971
972 ADM=
973 OADM=
974
975 # list of pTracers to check for monitor output
976 PTRACERS_NUM="1 2 3 4 5"
977
978 MATCH_CRIT=10
979
980 printf "parsing options... "
981
982 ac_prev=
983 for ac_option ; do
984
985 # If the previous option needs an argument, assign it.
986 if test -n "$ac_prev"; then
987 eval "$ac_prev=\$ac_option"
988 ac_prev=
989 continue
990 fi
991
992 ac_optarg=`expr "x$ac_option" : 'x[^=]*=\(.*\)'`
993
994 case $ac_option in
995
996 -help | --help | -h | --h) usage ;;
997
998 -optfile | --optfile | -of | --of) ac_prev=OPTFILE ;;
999 -optfile=* | --optfile=* | -of=* | --of=*) OPTFILE=$ac_optarg ;;
1000
1001 -addr | --addr | -a | --a) ac_prev=ADDRESSES ;;
1002 -addr=* | --addr=* | -a=* | --a=*) ADDRESSES=$ac_optarg ;;
1003 -mpackdir | --mpackdir | -mpd | --mpd) ac_prev=MPACKDIR ;;
1004 -mpackdir=* | --mpackdir=* | -mpd=* | --mpd=*) MPACKDIR=$ac_optarg ;;
1005
1006 -tdir | --tdir | -t | --t) ac_prev=TESTDIRS ;;
1007 -tdir=* | --tdir=* | -t=* | --t=*) TESTDIRS=$ac_optarg ;;
1008 -skipdir | --skipdir | -skd | --skd) ac_prev=SKIPDIRS ;;
1009 -skipdir=* | --skipdir=* | -skd=* | --skd=*) SKIPDIRS=$ac_optarg ;;
1010
1011 -bash | --bash | -b | --b) ac_prev=BASH ;;
1012 -bash=* | --bash=* | -b=* | --b=*) BASH=$ac_optarg ;;
1013
1014 -command | --command | -c | --c) ac_prev=COMMAND ;;
1015 -command=* | --command=* | -c=* | --c=*) COMMAND=$ac_optarg ;;
1016
1017 -makedepend | --makedepend | -md | --md) ac_prev=MKDEPEND ;;
1018 -makedepend=* | --makedepend=* | -md=* | --md=*) MKDEPEND=$ac_optarg ;;
1019
1020 -make | --make | -m | --m) ac_prev=MAKE ;;
1021 -make=* | --make=* | -m=* | --m=*) MAKE=$ac_optarg ;;
1022
1023 -odir | --odir) ac_prev=OUTDIR ;;
1024 -odir=* | --odir=*) OUTDIR=$ac_optarg ;;
1025
1026 -ptracers | --ptracers | -ptr | --ptr) ac_prev=PTRACERS_NUM ;;
1027 -ptracers=* | --ptracers=* | -ptr=* | --ptr=*) PTRACERS_NUM=$ac_optarg ;;
1028
1029 -match | --match ) ac_prev=MATCH_CRIT ;;
1030 -match=* | --match=* ) MATCH_CRIT=$ac_optarg ;;
1031
1032 -j | --j) ac_prev=JOBS ;;
1033 -j=* | --j=*) JOBS=$ac_optarg ;;
1034
1035 -ef | --ef) ac_prev=EXTRFLG ;;
1036 -ef=* | --ef=*) EXTRFLG=$ac_optarg ;;
1037
1038 -clean | --clean) CLEANUP=t ; DELDIR=t ;;
1039
1040 -norun | --norun | -nr | --nr) NORUN=t ;;
1041 -obj | --obj ) TARG='obj' ; NORUN=t ;;
1042 -runonly | --runonly | -ro | --ro) QUICK=t ; NOMAKE=t ;;
1043 -quick | --quick | -q | --q) QUICK=t ;;
1044 -nogenmake | --nogenmake | -ng | --ng) NOGENMAKE=t ;;
1045 -noclean | --noclean | -nc | --nc) NOCLEAN=t ;;
1046 -nodepend | --nodepend | -nd | --nd) NODEPEND=t ;;
1047
1048 -postclean | --postclean | -pc | --pc) POSTCLEAN=2 ;;
1049 -deloutp | --deloutp | -do | --do) POSTCLEAN=1 ;;
1050
1051 -mpi | --mpi) MPI=2 ;;
1052 -MPI | --MPI) ac_prev=MPI ;;
1053 -MPI=* | --MPI=*) MPI=$ac_optarg ;;
1054
1055 -mfile | --mfile | -mf | --mf) ac_prev=MPI_MFILE ;;
1056 -mfile=* | --mfile=* | -mf=* | --mf=*) MPI_MFILE=$ac_optarg ;;
1057
1058 -mth) MULTI_THREAD=t ;;
1059
1060 -adm | -ad) ADM=t ;;
1061 -oad) OADM=t; NODEPEND=t ;;
1062
1063 -ieee) echo "Warning: ignore option '-ieee' (already the default)"
1064 printf " ... " ;;
1065 -noieee) echo "Warning: will use option '-fast' instead of '-noieee' (obsolete)"
1066 printf " ... " ; OptLev=`expr $OptLev \* 2` ;;
1067 -fast) OptLev=`expr $OptLev \* 2` ;;
1068 -devel) OptLev=0 ;;
1069 -gsl) GSL=t ;;
1070
1071 -verbose) verbose=2 ;;
1072 -debug) debug=1 ;;
1073 -quiet) verbose=0 ;;
1074
1075 -deldir | -dd) DELDIR=t ;;
1076
1077 -use_r4|-ur4) USE_R4=t ;;
1078
1079 -ts) TS=t;;
1080 -papis) PAPIS=t;;
1081 -pcls) PCL=t;;
1082
1083 -*) echo "Error: unrecognized option: "$ac_option
1084 usage ;;
1085 *) echo "Error: unrecognized argument: "$ac_option
1086 usage ;;
1087
1088 esac
1089
1090 done
1091
1092 if test "x$QUICK" = xt ; then
1093 NOGENMAKE=t
1094 NOCLEAN=t
1095 NODEPEND=t
1096 fi
1097
1098 #- check length of MPI machine file:
1099 if test "x$MPI" != x0 -a "x$MPI_MFILE" != x ; then
1100 if test -r $MPI_MFILE ; then
1101 nl=`wc -l $MPI_MFILE | awk '{print $1}'`
1102 if [ $nl -lt $MPI ] ; then
1103 echo "Error: need at least $MPI nodes (currently only $nl) in MPI_MFILE=$MPI_FILE"
1104 usage
1105 fi
1106 if [ $verbose -gt 1 ]; then
1107 echo " MPI_MFILE=$MPI_MFILE : $nl procs for MPI=$MPI run"
1108 fi
1109 else
1110 echo "Error: cannot access MPI_MFILE=$MPI_FILE"
1111 usage
1112 fi
1113 fi
1114
1115 #- setting for forward or ADM testing
1116 if test "x$ADM" = xt ; then
1117 code_dir=code_ad
1118 inputdir=input_ad
1119 ref_outp="output_adm.txt"
1120 EXECUTABLE="mitgcmuv_ad"
1121 elif test "x$OADM" = xt ; then
1122 code_dir=code_oad
1123 inputdir=input_oad
1124 ref_outp="output_oadm.txt"
1125 EXECUTABLE="mitgcmuv_ad"
1126 else
1127 code_dir=code
1128 inputdir=input
1129 ref_outp="output.txt"
1130 EXECUTABLE="mitgcmuv"
1131 fi
1132
1133 xx=`echo $TESTDIRS | awk '{print $1}'`
1134 if test "x$TESTDIRS" = x ; then
1135 LIST=`scandirs results/$ref_outp`
1136 elif test $xx = 'start_from' ; then
1137 xx=`echo $TESTDIRS | awk '{print $2}'`
1138 LIST=`scandirs results/$ref_outp | sed -n "/$xx/,$ p"`
1139 else
1140 #- expand group of experiments:
1141 LIST=" "
1142 for xx in $TESTDIRS
1143 do
1144 case $xx in
1145 'basic') LIST=${LIST}" aim.5l_cs hs94.128x64x5 ideal_2D_oce"
1146 LIST=${LIST}" lab_sea tutorial_baroclinic_gyre"
1147 LIST=${LIST}" tutorial_global_oce_latlon tutorial_plume_on_slope"
1148 ;;
1149 'tutorials')
1150 LIST=${LIST}" "`ls | grep 'tutorial_'` ;;
1151 *) LIST=${LIST}" "$xx ;;
1152 esac
1153 done
1154 fi
1155 #echo 'LIST='${LIST}'<'
1156 #- skip dirs, remove duplicate and non-directory:
1157 TESTDIRS=" "
1158 count=0
1159 for xx in $LIST
1160 do
1161 yy=`echo $SKIPDIRS | grep -c $xx`
1162 if test $yy = 0 ; then
1163 if test -d $xx ; then
1164 yy=`echo $TESTDIRS | grep -c $xx`
1165 if test $yy = 0 ; then TESTDIRS=${TESTDIRS}" "$xx ; fi
1166 else count=1 ;
1167 echo ""; echo -n " -- skip \"$xx\" (not a directory !)"
1168 fi
1169 else
1170 if test $count = 1 ; then echo -n ", \"$xx\""
1171 else count=1 ; echo "" ; echo -n " skip: \"$xx\""
1172 fi
1173 fi
1174 done
1175 if test $count = 1 ; then echo "" ; echo -n " ... " ; fi
1176 #echo 'TESTDIRS='${TESTDIRS}'<'
1177
1178 if test "x$OPTFILE" = xNONE -a "x$MITGCM_OF" != x ; then
1179 OPTFILE=$MITGCM_OF
1180 fi
1181
1182 LOC_MFILE='tr_mpi_mfile'
1183 RUNLOG="run.tr_log"
1184 OUTPUTFILE=$ref_outp
1185 if test "x$COMMAND" = x ; then
1186 COMMAND="./$EXECUTABLE > $OUTPUTFILE"
1187 fi
1188 if test "x$MPI" != x0 ; then
1189 OUTPUTFILE="STDOUT.0000"
1190 fi
1191
1192 echo "OK (COMMAND= $COMMAND )"
1193
1194 # set the Default List of output variables to be checked:
1195 # (use default or load experiment-specific list from file "tr_checklist")
1196 # content : 1rst = main variable used to decide if it pass or FAIL
1197 # others = number of matching digits to be printed in summary.txt
1198 if test "x$ADM" = x -a "x$OADM" = x; then
1199 DEF_CHECK_LIST='PS PS T+ S+ U+ V+ pt1+ pt2+ pt3+ pt4+ pt5+'
1200 EMPTY_RESULTS='.. .. .. .. .. .. .. .. .. .. .. .. .. .. .. .. ..'
1201 LEN_CHECK_LIST=`echo $DEF_CHECK_LIST | sed 's/ [a-zA-Z0-9]*+/&mn &mx &av &sd/g' | awk '{print NF-1}'`
1202 ii=`echo $EMPTY_RESULTS | awk '{print NF}'`
1203 EMPTY_RESULTS=$EMPTY_RESULTS`expr $LEN_CHECK_LIST - $ii | awk 'BEGIN{FS=":"}{for(i=1;i<=$1;i++){printf " ."}}'`
1204 else
1205 DEF_CHECK_LIST='Grad Cost Grad'
1206 EMPTY_RESULTS='.. ..'
1207 LEN_CHECK_LIST=`echo $DEF_CHECK_LIST | sed 's/ [a-zA-Z0-9]*+/&mn &mx &av &sd/g' | awk '{print NF-1}'`
1208 fi
1209
1210 # create the FORTRAN comparison code
1211 if test -x tr_cmpnum ; then
1212 echo "skipping comparison code build"
1213 else
1214 createcodelet
1215 fi
1216
1217 # build the mpack utility (if ADDRESSES = NONE, do it to test the build)
1218 if test "x$ADDRESSES" = x ; then
1219 echo "skipping mpack build"
1220 else
1221 build_mpack
1222 fi
1223
1224 # Create a uniquely named directory to store results
1225 CMDLINE=$0
1226 for xx in "$@" ; do nw=`echo $xx | wc -w`
1227 if test $nw = '1' ; then CMDLINE="$CMDLINE $xx"
1228 else CMDLINE="$CMDLINE '$xx'" ; fi
1229 done
1230 #for xx in "$@" ; do CMDLINE="$CMDLINE '$xx'" ; done
1231 MACH=`hostname`
1232 UNAMEA=`uname -a`
1233 DATE=`date +%Y%m%d`
1234 BASE="tr_"$MACH"_"$DATE"_"
1235 if test "x$OUTDIR" != x ; then
1236 BASE="tr_"$OUTDIR"_"$DATE"_"
1237 else
1238 short_name=`hostname | sed 's/\..*$//'`
1239 BASE="tr_"$short_name"_"$DATE"_"
1240 fi
1241 DNUM=0
1242 DRESULTS="$BASE$DNUM"
1243 while test -e $DRESULTS ; do
1244 DNUM=$(( $DNUM + 1 ))
1245 DRESULTS="$BASE$DNUM"
1246 done
1247 mkdir $DRESULTS
1248 RETVAL=$?
1249 if test "x$RETVAL" != x0 ; then
1250 echo "ERROR: Can't create results directory \"./$DRESULTS\""
1251 exit 1
1252 fi
1253 SUMMARY="$DRESULTS/summary.txt"
1254 start_date=`date`
1255 echo $start_date > $SUMMARY
1256 echo 'run:' $CMDLINE >> $SUMMARY
1257 echo 'on :' $UNAMEA >> $SUMMARY
1258
1259 of_path=
1260 if test "x$OPTFILE" != xNONE ; then
1261 if test -r $OPTFILE ; then
1262 # get the path
1263 path=${OPTFILE%/*}
1264 if test "x$path" = x ; then
1265 of_path=`pwd`
1266 else
1267 of_path=`( cd $path > /dev/null 2>&1 ; pwd )`
1268 fi
1269 file=${OPTFILE##*/}
1270 OPTFILE=$of_path/$file
1271 cp $OPTFILE $DRESULTS
1272 echo >> $SUMMARY
1273 echo " OPTFILE=$OPTFILE" >> $SUMMARY
1274 else
1275 echo | tee $SUMMARY
1276 echo "ERROR: can't read OPTFILE=\"$OPTFILE\"" | tee $SUMMARY
1277 exit 1
1278 fi
1279 else
1280 echo >> $SUMMARY
1281 echo "No \"OPTFILE\" was specified ; genmake2 found and uses:" >> $SUMMARY
1282 #-note: to be filled later after 1rst run
1283 fi
1284 echo
1285 echo >> $SUMMARY
1286 if test "x$ADM" = x -a "x$OADM" = x; then
1287 if [ $MATCH_CRIT -lt 10 ] ;
1288 then line_0="default "$MATCH_CRIT ;
1289 else line_0="default "$MATCH_CRIT ; fi
1290 line_0="$line_0 ----T----- ----S----- ----U----- ----V-----"
1291 line_1="G D M c m s m s m s m s"
1292 line_2="E p a R g m m e . m m e . m m e . m m e ."
1293 line_3="N n k u 2 i a a d i a a d i a a d i a a d"
1294 line_4="2 d e n d n x n . n x n . n x n . n x n ."
1295 for ii in $PTRACERS_NUM ; do
1296 line_0="$line_0 --PTR 0"$ii"--"
1297 line_1="$line_1 m s"
1298 line_2="$line_2 m m e ."
1299 line_3="$line_3 i a a d"
1300 line_4="$line_4 n x n ."
1301 done
1302 echo "$line_0" | tee -a $SUMMARY
1303 echo "$line_1" | tee -a $SUMMARY
1304 echo "$line_2" | tee -a $SUMMARY
1305 echo "$line_3" | tee -a $SUMMARY
1306 echo "$line_4" | tee -a $SUMMARY
1307 echo " " | tee -a $SUMMARY
1308 else
1309 echo "ADJOINT=true" >> $SUMMARY
1310 echo >> $SUMMARY
1311 if [ $MATCH_CRIT -lt 10 ] ;
1312 then line_0="default "$MATCH_CRIT ;
1313 else line_0="default "$MATCH_CRIT ; fi
1314 echo "$line_0" | tee -a $SUMMARY
1315 cat << EOF | tee -a $SUMMARY
1316 G D M C G
1317 E p a R o r
1318 N n k u s a
1319 2 d e n t d
1320
1321 EOF
1322 fi
1323 echo "-------------------------------------------------------------------------------"
1324
1325 # ...and each test directory...
1326 for dir in $TESTDIRS ; do
1327
1328 # set builddir & rundir:
1329 builddir="build"
1330 if test ! -d $dir/$builddir ; then mkdir $dir/$builddir ; fi
1331 rundir="run"
1332 pfxdir="tr_$rundir"
1333 if test ! -d $dir/$rundir ; then
1334 rundir=$builddir
1335 fi
1336 CODE_DIR=$dir/$code_dir
1337 BUILD_DIR=$dir/$builddir
1338
1339 # Cleanup only!
1340 if test "x$CLEANUP" = xt ; then
1341 echo -n ' --- dir:' $BUILD_DIR ': '
1342 makeclean $BUILD_DIR
1343 ( cd $BUILD_DIR
1344 rm -f $EXECUTABLE *.bak
1345 rm -f genmake_state genmake_*optfile genmake.log
1346 rm -f SIZE.h.mpi genmake.tr_log make.tr_log
1347 )
1348 if test -d $dir/$rundir/CVS ; then
1349 echo -n ' --- dir:' $dir/$rundir ': '
1350 run_clean $dir/$rundir
1351 fi
1352 trdir=`( cd $dir ; find . -type d -name "$pfxdir.*" -print | sed 's/^.\///')`
1353 ttd=`echo $trdir | wc -w`
1354 if test $ttd != 0 ; then
1355 echo ' --- rm dir:' $trdir
1356 ( cd $dir ; rm -rf $trdir )
1357 fi
1358 continue
1359 fi
1360
1361 # Verify that the testdir exists and contains previous
1362 # results in the correct location--or skip this directory!
1363 fout=$dir"/results/"$ref_outp
1364 if test ! -r $fout ; then
1365 echo "can't read \"$fout\" -- skipping $dir"
1366 continue
1367 fi
1368
1369 # Check for specific files for particular type of run
1370
1371 if test ! -r $CODE_DIR"/SIZE.h_mpi" -a "x$MPI" != "x0" ; then
1372 echo "can't find \"$CODE_DIR/SIZE.h_mpi\" -- skipping $dir"
1373 continue
1374 fi
1375 if test ! -r $dir"/input/eedata.mth" -a "x$MULTI_THREAD" = "xt" ; then
1376 echo "can't find \"$dir/input/eedata.mth\" -- skipping $dir"
1377 continue
1378 fi
1379
1380 if test "x$MPI" != "x0" ; then
1381 prefer_X=0
1382 if test "x$MULTI_THREAD" = "xt" ; then
1383 retv=`check_eedata $dir"/input/eedata.mth"`
1384 if test $retv = 1 ; then prefer_X=1 ; fi
1385 fi
1386 #- create new SIZE.h with no more than '$MPI' Procs
1387 mk_mpi_size $CODE_DIR"/SIZE.h_mpi" $BUILD_DIR"/tr_size.mpi" $MPI $prefer_X
1388 LOC_NPROC=$?
1389 ( cd $BUILD_DIR
1390 if test -r SIZE.h.mpi ; then
1391 cmp tr_size.mpi SIZE.h.mpi > /dev/null 2>&1 ; RETVAL=$?
1392 else RETVAL=1
1393 fi
1394 if test "x$RETVAL" = x0 ; then
1395 rm -f tr_size.mpi
1396 else
1397 rm -f SIZE.h.mpi ; mv tr_size.mpi SIZE.h.mpi
1398 fi
1399 )
1400 if test "x$MPI_MFILE" != x ; then
1401 #- create new MPI machine-file with the right number of Procs
1402 rm -f $LOC_MFILE
1403 cat $MPI_MFILE | sort | uniq | head -$LOC_NPROC > $LOC_MFILE
1404 nl=`wc -l $LOC_MFILE | awk '{print $1}'`
1405 if [ $nl -lt $LOC_NPROC ] ; then
1406 rm -f $LOC_MFILE
1407 cat $MPI_MFILE | head -$LOC_NPROC > $LOC_MFILE
1408 #sed -n "1,$LOC_NPROC p" $MPI_MFILE > $LOC_MFILE
1409 fi
1410 if [ $verbose -gt 1 ]; then
1411 nl=`wc -l $LOC_MFILE | awk '{print $1}'`
1412 echo " new LOC_MFILE=$LOC_MFILE : $nl procs for LOC_NPROC=$LOC_NPROC"
1413 fi
1414 fi
1415 if test "x$MULTI_THREAD" = "xt" ; then
1416 retv=`check_eedata $dir"/input/eedata.mth" $BUILD_DIR"/SIZE.h.mpi"`
1417 if test $retv != 0 ; then
1418 echo "input/eedata.mth tiling misfit -- skipping $dir"
1419 continue
1420 fi
1421 fi
1422 fi
1423
1424 # Check whether there are "extra runs" for this testdir
1425 extra_runs=
1426 if test "x$NORUN" = xf ; then
1427 ex_run_dirs=`( cd $dir ; echo $inputdir.* )`
1428 fi
1429 #echo "ex_run_dirs='$ex_run_dirs'"
1430 for exd in $ex_run_dirs ; do
1431 name=`echo $exd | sed -e "s/$inputdir\.//"`
1432 refExOut=`echo $ref_outp | sed "s/\./.${name}./"`
1433 outf="$dir/results/$refExOut"
1434 if test -f $outf -a -r $outf ; then
1435 if test "x$MULTI_THREAD" = "xt" ; then
1436 if test -r $dir"/"$exd"/eedata.mth" ; then
1437 if test "x$MPI" = "x0" ; then
1438 extra_runs="$extra_runs $name"
1439 else
1440 retv=`check_eedata $dir"/"$exd"/eedata.mth" $BUILD_DIR"/SIZE.h.mpi"`
1441 if test $retv = 0 ; then
1442 extra_runs="$extra_runs $name"
1443 else
1444 echo $exd"/eedata.mth tiling misfit -- skipping $dir"
1445 fi
1446 fi
1447 #else echo $dir"/"$exd"/eedata.mth: not found"
1448 fi
1449 else
1450 extra_runs="$extra_runs $name"
1451 fi
1452 fi
1453 done
1454
1455 echo
1456 if test "x$extra_runs" = "x" ; then
1457 echo "Experiment: $dir"
1458 else
1459 echo "Experiment: $dir ; extra_runs=$extra_runs"
1460 fi
1461 echo
1462 unset genmake makedepend make run
1463 results=$EMPTY_RESULTS
1464
1465 # Create an output dir & summary.txt file for each tested experiment (tdir)
1466 locDIR=$DRESULTS"/"$dir
1467 mkdir $locDIR
1468 #- report to this experiment local summary file ---
1469 echo "DATE='$DATE' ; tdir='$dir'" > $locDIR"/summary.txt"
1470 echo "MACH='$MACH'" >> $locDIR"/summary.txt"
1471 echo "UNAMEA='$UNAMEA'" >> $locDIR"/summary.txt"
1472 CDIR=`pwd`"/$locDIR"
1473
1474 if test "x$NORUN" = xt ; then
1475 run=N
1476 genmakemodel $dir/$builddir && genmake=Y \
1477 && makeclean $dir/$builddir \
1478 && symlink_mpifiles $dir $code_dir $builddir \
1479 && makedependmodel $dir/$builddir && makedepend=Y \
1480 && makemodel $dir/$builddir && make=Y
1481 else
1482 genmakemodel $dir/$builddir && genmake=Y \
1483 && makeclean $dir/$builddir \
1484 && symlink_mpifiles $dir $code_dir $builddir \
1485 && makedependmodel $dir/$builddir && makedepend=Y \
1486 && makemodel $dir/$builddir && make=Y \
1487 && run_clean $dir/$rundir \
1488 && linkdata $dir/$rundir $inputdir \
1489 && runmodel $dir/$rundir && run=Y \
1490 && results=`testoutput_run $dir $rundir $ref_outp`
1491 fi
1492 #echo "results='$results'"
1493
1494 fres=`formatresults $dir ${genmake:-N} ${makedepend:-N} ${make:-N} ${run:-N} $results`
1495 echo 1>&2
1496 echo "$fres" | sed 's/ 99/ --/g' | sed 's/ > />/' | sed 's/ < /</' >> $SUMMARY
1497 echo "fresults='$fres'" | sed 's/ 99/ --/g' >> $locDIR"/summary.txt"
1498
1499 for ex in $extra_runs ; do
1500 unset run
1501 results=$EMPTY_RESULTS
1502 # reference output file
1503 refExOut=`echo $ref_outp | sed "s/\./.${ex}./g"`
1504 # Create an output dir & summary.txt file for each extra run (tdir.ex)
1505 locDIR=$DRESULTS"/"$dir"."$ex
1506 mkdir $locDIR
1507 #- report to this experiment local summary file ---
1508 echo "DATE='$DATE' ; tdir='$dir.$ex'" > $locDIR"/summary.txt"
1509 #echo "MACH='$MACH'" >> $locDIR"/summary.txt"
1510 #echo "UNAMEA='$UNAMEA'" >> $locDIR"/summary.txt"
1511 CDIR=`pwd`"/$locDIR"
1512 test ! -e "$dir/$pfxdir.$ex" && mkdir "$dir/$pfxdir.$ex"
1513 run_clean $dir/$pfxdir.$ex
1514 linkdata $dir/$pfxdir.$ex $inputdir.$ex $inputdir
1515 runmodel $dir/$pfxdir.$ex && run=Y \
1516 && results=`testoutput_run $dir $pfxdir.$ex $refExOut`
1517 fres=`formatresults $dir ${genmake:-N} ${makedepend:-N} ${make:-N} ${run:-N} $results`
1518 fres="$fres.$ex"
1519 echo 1>&2
1520 echo "$fres" | sed 's/ 99/ --/g' | sed 's/ > />/' | sed 's/ < /</' >> $SUMMARY
1521 echo "fresults='$fres'" | sed 's/ 99/ --/g' >> $locDIR"/summary.txt"
1522 if test "x$POSTCLEAN" = x2 ; then
1523 run_clean $dir/$pfxdir.$ex
1524 fi
1525 done
1526
1527 if test -f $DRESULTS"/"genmake_state ; then : ; else
1528 if test -f $dir/$builddir/Makefile ; then
1529 mkOpt=`grep '^# OPTFILE=' $dir/$builddir/Makefile 2>/dev/null | head -1 | sed 's/^# //'`
1530 echo "from '$dir/$builddir/Makefile', extract:" > $DRESULTS/genmake_state
1531 sed -n '/^# executed by:/,+1 p' $dir/$builddir/Makefile >> $DRESULTS/genmake_state
1532 echo " $mkOpt" >> $DRESULTS/genmake_state
1533 if test "x$OPTFILE" = xNONE ; then
1534 eval $mkOpt
1535 sed "/^No \"OPTFILE\" was specified ; genmake2/a\ OPTFILE=${OPTFILE}"\
1536 $SUMMARY > tr_0.tmp_log
1537 RETVAL=$?
1538 if test "x$RETVAL" = x0 ; then rm -f $SUMMARY
1539 cp tr_0.tmp_log $SUMMARY
1540 else rm -f tr_0.tmp_log
1541 fi
1542 fi
1543 gmkLog=$dir/$builddir/genmake.log
1544 grep '^Get compiler version using:' $gmkLog > /dev/null 2>&1
1545 RETVAL=$?
1546 if test "x$RETVAL" = x0 ; then
1547 echo "from '$gmkLog', extract compiler version:" >> $DRESULTS/genmake_state
1548 sed -n '/Get compiler version/,/<-- compiler version/p' $gmkLog \
1549 | grep -v '^... compiler version ' > tr_1.tmp_log
1550 sed -n '1p' tr_1.tmp_log >> $DRESULTS/genmake_state
1551 sed -n '2,/^$/p' tr_1.tmp_log | sed '/^$/d' | sed 's/^./ &/' \
1552 >> $DRESULTS/genmake_state
1553 rm -f tr_1.tmp_log
1554 fi
1555 fi
1556 fi
1557 #postclean $dir/$builddir
1558 if test "x$POSTCLEAN" = x2 ; then
1559 makeclean $dir/$builddir \
1560 && run_clean $dir/$rundir
1561 fi
1562 if test "x$MPI" != x0 -a "x$MPI_MFILE" != x ; then rm -f $LOC_MFILE ; fi
1563
1564 echo "-------------------------------------------------------------------------------"
1565
1566 done
1567
1568 printf "Start time: " >> $SUMMARY
1569 echo "$start_date" >> $SUMMARY
1570 printf "End time: " >> $SUMMARY
1571 date >> $SUMMARY
1572
1573 # If addresses were supplied and mpack built successfully, then try
1574 # to send email using mpack.
1575 if test "x$ADDRESSES" = xNONE -o "x$ADDRESSES" = x ; then
1576 echo "No results email was sent."
1577 else
1578 if test "x$HAVE_MPACK" = xt ; then
1579 tar -cf $DRESULTS".tar" $DRESULTS > /dev/null 2>&1 \
1580 && gzip $DRESULTS".tar" \
1581 && $MPACK -s MITgcm-test -m 3555000 $DRESULTS".tar.gz" $ADDRESSES
1582 RETVAL=$?
1583 if test "x$RETVAL" != x0 ; then
1584 echo
1585 echo "Warning: The tar, gzip, & mpack step failed. Please send email"
1586 echo " to <MITgcm-support@mitgcm.org> for help. You may copy the "
1587 echo " summary of results from the directory \"$DRESULTS\"."
1588 echo
1589 else
1590 echo
1591 echo "An email containing results was sent to the following addresses:"
1592 echo " \"$ADDRESSES\""
1593 echo
1594 test -f $DRESULTS".tar" && rm -f $DRESULTS".tar"
1595 test -f $DRESULTS".tar.gz" && rm -f $DRESULTS".tar.gz"
1596 fi
1597 fi
1598 fi
1599
1600 if test "x$QUICK" = xf -a "x$NORUN" = xf ; then
1601 rm -f tr_cmpnum.c tr_cmpnum
1602 fi
1603
1604 if test "x$CLEANUP" != xt ; then
1605 cat $SUMMARY | sed 's/ \. \. \. \. \. \. \. \. \. \. \. \. //'
1606 if test -e tr_out.txt ; then
1607 mv tr_out.txt tr_out.txt.old
1608 fi
1609 cat $SUMMARY | sed '/^[YN] [YN] [YN] [YN]/ s/ \. //g' > tr_out.txt
1610 fi
1611
1612 if test "x$DELDIR" = xt ; then
1613 rm -rf $DRESULTS
1614 fi

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