| 1 |
#! /usr/bin/env bash |
| 2 |
# |
| 3 |
# $Header: /u/gcmpack/MITgcm/verification/testreport,v 1.121 2009/01/30 20:08:09 jmc Exp $ |
| 4 |
# $Name: $ |
| 5 |
# |
| 6 |
|
| 7 |
usage() |
| 8 |
{ |
| 9 |
echo |
| 10 |
echo "Usage: $0 [OPTIONS]" |
| 11 |
echo |
| 12 |
echo "where possible OPTIONS are:" |
| 13 |
echo " (-help|-h) print usage" |
| 14 |
echo " (-mth) run multi-threaded (using eedata.mth)" |
| 15 |
echo " (-mpi) compile and run using MPI" |
| 16 |
echo " (-ieee|-noieee) if possible, use IEEE compiler flags" |
| 17 |
echo " (DEF=\"-ieee\")" |
| 18 |
echo " (-gsl) compile with \"-gsl\" flag" |
| 19 |
echo " (-of=|-optfile=)STRING list of optfiles to use" |
| 20 |
echo " (-a|-addr) STRING list of email recipients" |
| 21 |
echo " (DEF=\"\" no email is sent)" |
| 22 |
echo " (-mpd|-mpackdir) DIR location of the mpack utility" |
| 23 |
echo " (DEF=\"../tools/mpack-1.6\")" |
| 24 |
echo " (-t|-tdir) STRING list of group and/or exp. dirs to test" |
| 25 |
echo " (recognized groups: basic, tutorials)" |
| 26 |
echo " (DEF=\"\" which test all)" |
| 27 |
echo " (-skd|-skipdir) STRING list of exp. dirs to skip" |
| 28 |
echo " (DEF=\"\" which test all)" |
| 29 |
echo " (-b|-bash) STRING preferred location of a \"bash\" or" |
| 30 |
echo " Bourne-compatible \"sh\" shell" |
| 31 |
echo " (DEF=\"\" for \"bash\")" |
| 32 |
echo " (-adm|-ad) perform an adjoint run" |
| 33 |
echo " (-oad) perform an OpenAD adjoint run" |
| 34 |
echo " (-command) STRING command to run" |
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echo " (DEF=\"make output.txt\")" |
| 36 |
echo " (-m|-make) STRING command to use for \"make\"" |
| 37 |
echo " (DEF=\"make\")" |
| 38 |
echo " (-odir) STRING used to build output directory name" |
| 39 |
echo " (DEF=\"hostname\")" |
| 40 |
echo " (-ptr|-ptracers) STRING specify which ptracers to test" |
| 41 |
echo " (DEF=\"1 2 3 4 5\")" |
| 42 |
echo " (-match) NUMBER Matching Criteria (number of digits)" |
| 43 |
echo " (DEF=\"12\")" |
| 44 |
echo " (-j) JOBS use \"make -j JOBS\" for parallel builds" |
| 45 |
echo " (-clean) *ONLY* run \"make CLEAN\"" |
| 46 |
echo " (-quick|-q) same as \"-nogenmake -noclean -nodepend\"" |
| 47 |
echo " (-nogenmake|-ng) skip the genmake stage" |
| 48 |
echo " (-noclean|-nc) skip the \"make clean\" stage" |
| 49 |
echo " (-nodepend|-nd) skip the \"make depend\" stage" |
| 50 |
echo " (-deldir|-dd) on success, delete the output directory" |
| 51 |
echo " (-ts) provide timing information per timestep" |
| 52 |
echo " (-papis) provide MFlop/s per timestep using PAPI" |
| 53 |
echo " (-pcls) provide MFlop/s per timestep using PCL" |
| 54 |
echo |
| 55 |
echo "and where STRING can be a whitespace-delimited list" |
| 56 |
echo "such as:" |
| 57 |
echo |
| 58 |
echo " -t 'exp0 exp2 exp3' " |
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echo " -addr='abc@123.com testing@home.org'" |
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echo |
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echo "provided that the expression is properly quoted within the current" |
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echo "shell (note the use of single quotes to protect white space)." |
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echo |
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exit 1 |
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} |
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|
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# build the mpack utility |
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build_mpack() |
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{ |
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printf "building the mpack utility... " |
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MPACK="$MPACKDIR/mpack" |
| 72 |
if test ! -x $MPACK ; then |
| 73 |
if test ! -d $MPACKDIR ; then |
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echo |
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echo "Error: can't find \"$MPACKDIR\"" |
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echo " are you sure this program is being run in the correct " |
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echo " (that is, \"MITGCM_ROOT\verification\") directory?" |
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echo |
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HAVE_MPACK=f |
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fi |
| 81 |
if test "x$CC" = x ; then |
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export CC=cc |
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fi |
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printf "building mpack (using CC=$CC)... " |
| 85 |
( cd $MPACKDIR && ./configure && $MAKE ) > tr_build_mpack.out 2>&1 |
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RETVAL=$? |
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if test "x$RETVAL" != x0 ; then |
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echo |
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echo "Error building the mpack tools at: $MPACK_DIR" |
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echo |
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HAVE_MPACK=f |
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else |
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rm -f tr_build_mpack.out |
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HAVE_MPACK=t |
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echo "done" |
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fi |
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else |
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HAVE_MPACK=t |
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echo "already exist" |
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fi |
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} |
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|
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testoutput_var() |
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{ |
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# testoutput_var dir s1 label subdir reference_output |
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# |
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# compares 1 variable output selected from file $dir/$subdir/$OUTPUTFILE |
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# with same output from reference file $dir/results/$reference_output |
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# using search strings s1 and text label |
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|
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if [ $debug -gt 0 ]; then |
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echo testoutput_var: grep "$2" $1/$4/$OUTPUTFILE 1>&2 |
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fi |
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if [ -r $1/$4/$OUTPUTFILE ]; then |
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grep "$2" $1/$4/$OUTPUTFILE | sed 's/.*=//' | cat -n > tmp1.txt |
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lncntA=`wc -l tmp1.txt | awk '{print $1}' ` |
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if [ $lncntA -lt 2 ]; then |
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if [ $verbose -gt 0 ]; then |
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echo Not enough lines of output when searching for "$2" 1>&2 |
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fi |
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return 99 |
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fi |
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else |
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echo testoutput_var: $OUTPUTFILE from model run was not readable 1>&2 |
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return 99 |
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fi |
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if [ $debug -gt 0 ]; then |
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echo testoutput_var: grep "$2" $1/results/$5 1>&2 |
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fi |
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grep "$2" $1/results/$5 | sed 's/.*=//' | cat -n > tmp2.txt |
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lncntB=`wc -l tmp2.txt | awk '{print $1}' ` |
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if [ $lncntB -lt 2 ]; then |
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if [ $verbose -gt 0 ]; then |
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echo Not enough lines of output when searching for "$2" 1>&2 |
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fi |
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return 99 |
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fi |
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if [ $lncntA -ne $lncntB ]; then |
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if [ $verbose -gt 0 ]; then |
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echo Not same Nb of lines when searching for "$2" ":" $lncntA $lncntB 1>&2 |
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fi |
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return 99 |
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fi |
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has_nan=`cat tmp1.txt | grep -i nan | wc -l` |
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if [ $has_nan -gt 0 ] ; then |
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echo testoutput_var: $OUTPUTFILE contains $has_nan NaN values 1>&2 |
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return 99 |
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fi |
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has_inf=`cat tmp1.txt | grep -i inf | wc -l` |
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if [ $has_inf -gt 0 ] ; then |
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echo testoutput_var: $OUTPUTFILE contains $has_inf Inf values 1>&2 |
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return 99 |
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fi |
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if [ $debug -gt 0 ]; then |
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echo testoutput_var: join tmp1.txt tmp2.txt 1>&2 |
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fi |
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join tmp1.txt tmp2.txt | awk '{print $1 " " $2 " " $3}' > tmp3.txt |
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if [ $debug -gt 0 ]; then |
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echo testoutput_var: compare_lines 1>&2 |
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fi |
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if [ $verbose -gt 1 ]; then |
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cat tmp3.txt 1>&2 |
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fi |
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echo "-1" >> tmp3.txt |
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# On the SGI O3K (*not* the O2K), "cat -n" inserts a ":" after the line number |
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cat tmp3.txt | sed -e 's|:||g' > tmp4.txt |
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digits_of_similarity=`./tr_cmpnum < tmp4.txt` |
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if [ $digits_of_similarity -eq 99 ]; then |
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if [ $verbose -gt 0 ]; then |
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echo testoutput_var: No comparison was available for \"$3\" 1>&2 |
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fi |
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digits_of_similarity=99 |
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else |
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if [ $verbose -gt 0 ]; then |
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echo There were $digits_of_similarity decimal places of similarity for \"$3\" 1>&2 |
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fi |
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fi |
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rm -f tmp1.txt tmp2.txt tmp3.txt tmp4.txt |
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|
| 180 |
return $digits_of_similarity |
| 181 |
} |
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|
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testoutput_run() |
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{ |
| 185 |
# testoutput_run directory subdir reference_output |
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# |
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# test output from 1 run in "directory" |
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# --> same processing for adjoint & forward test |
| 189 |
# default list of output variables to be checked: |
| 190 |
# 1rst : main variable used to decide if it pass or FAIL |
| 191 |
# others : number of matching digits to be printed in summary.txt |
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listChk=$DEF_CHECK_LIST |
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# load experiment-specific list from file "tr_checklist" (if it exist) |
| 194 |
if test -r $1/$2/tr_checklist ; then listChk=`cat $1/$2/tr_checklist` ; fi |
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sVar=`echo $listChk | awk '{print $1}'` |
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# remove 1rst var and expand the list: + => min max mean s.d |
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listVar=`echo $listChk | sed 's/ [a-zA-Z0-9]*+/&mn &mx &av &sd/g' \ |
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| sed 's/+//g' | sed "s/^$sVar//"` |
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if [ $debug -gt 0 ]; then echo "testoutput_run: listVar(I)='$listVar'" 1>&2 ; fi |
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# check for ptracer output in reference_output file : |
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outpref=$1/results/$3 |
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ptr_mon="trcstat_ptracerXX_min trcstat_ptracerXX_max" |
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ptr_mon="$ptr_mon trcstat_ptracerXX_mean trcstat_ptracerXX_sd" |
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for ii in $PTRACERS_NUM ; do |
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ptrfound=0 |
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for jj in $ptr_mon ; do |
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name=`eval "echo $jj | sed -e 's|XX|0"$ii"|g'"` |
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tst=`grep $name $outpref | wc -l | awk '{print $1}'` |
| 209 |
if test ! "x$tst" = x0 ; then ptrfound=1 ; fi |
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done |
| 211 |
if test $ptrfound = '1' ; then |
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eval "HAVE_PTR0"$ii"=t" |
| 213 |
else |
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eval "HAVE_PTR0"$ii"=f" |
| 215 |
if test "x$ADM" = x -a "x$OADM" = x; then |
| 216 |
# remove this ptr from the list of output variable to check |
| 217 |
# echo "-- ptr test=" $tst "number of var=" `echo $listVar | awk '{print NF}'` 1>&2 |
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listVar=`echo "$listVar" | sed "s/ pt$ii..//g"` |
| 219 |
fi |
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fi |
| 221 |
# eval 'echo "HAVE_PTR0'$ii' = $HAVE_PTR0'$ii'"' 1>&2 |
| 222 |
done |
| 223 |
tst=`echo $sVar $listVar | awk '{ for(i=2;i<=NF;i++){if($i==$1)t+=1}; print t }'` |
| 224 |
if test $tst != 1 ; then |
| 225 |
if test $tst = 0 ; then echo "==> WARNING: selected var >$sVar< not found" 1>&2 |
| 226 |
else echo "==> WARNING: found selected var >$sVar< $tst times" 1>&2 ; fi |
| 227 |
echo "==> WARNING: in checked list:" $listVar 1>&2 |
| 228 |
#- put it back once: |
| 229 |
listVar=" $sVar "`echo "$listVar " | sed "s/ $sVar / /g"` |
| 230 |
fi |
| 231 |
if [ $debug -gt 0 ]; then echo "testoutput_run: listVar(M)='$listVar'" 1>&2 ; fi |
| 232 |
echo "listVar='$listVar'" > $CDIR"/summary.txt" |
| 233 |
allargs="" |
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for xx in $listVar |
| 235 |
do |
| 236 |
case $xx in |
| 237 |
'PS') if [ $debug -gt 0 ] |
| 238 |
then echo testoutput_run: testoutput_var $1 cg2d_init_res 1>&2 ; fi |
| 239 |
testoutput_var $1 "cg2d_init_res" "Press. Solver (cg2d)" $2 $3; yy=$? |
| 240 |
if [ $debug -gt 0 ] ; then echo testoutput_run: cg2dres=$yy 1>&2 ; fi ;; |
| 241 |
'Cost') testoutput_var $1 "ADM precision_derivative_cost" "ADM Cost" $2 $3; yy=$? ;; |
| 242 |
'Grad') testoutput_var $1 "ADM precision_derivative_grad" "ADM Grad" $2 $3; yy=$? ;; |
| 243 |
'Tmn') testoutput_var $1 "dynstat_theta_min" "Theta minimum" $2 $3; yy=$? ;; |
| 244 |
'Tmx') testoutput_var $1 "dynstat_theta_max" "Theta maximum" $2 $3; yy=$? ;; |
| 245 |
'Tav') testoutput_var $1 "dynstat_theta_mean" "Theta mean" $2 $3; yy=$? ;; |
| 246 |
'Tsd') testoutput_var $1 "dynstat_theta_sd" "Theta Std.Dev" $2 $3; yy=$? ;; |
| 247 |
'Smn') testoutput_var $1 "dynstat_salt_min" "Salt minimum" $2 $3; yy=$? ;; |
| 248 |
'Smx') testoutput_var $1 "dynstat_salt_max" "Salt maximum" $2 $3; yy=$? ;; |
| 249 |
'Sav') testoutput_var $1 "dynstat_salt_mean" "Salt mean" $2 $3; yy=$? ;; |
| 250 |
'Ssd') testoutput_var $1 "dynstat_salt_sd" "Salt Std.Dev" $2 $3; yy=$? ;; |
| 251 |
'Umn') testoutput_var $1 "dynstat_uvel_min" "U minimum" $2 $3; yy=$? ;; |
| 252 |
'Umx') testoutput_var $1 "dynstat_uvel_max" "U maximum" $2 $3; yy=$? ;; |
| 253 |
'Uav') testoutput_var $1 "dynstat_uvel_mean" "U mean" $2 $3; yy=$? ;; |
| 254 |
'Usd') testoutput_var $1 "dynstat_uvel_sd" "U Std.Dev" $2 $3; yy=$? ;; |
| 255 |
'Vmn') testoutput_var $1 "dynstat_vvel_min" "V minimum" $2 $3; yy=$? ;; |
| 256 |
'Vmx') testoutput_var $1 "dynstat_vvel_max" "V maximum" $2 $3; yy=$? ;; |
| 257 |
'Vav') testoutput_var $1 "dynstat_vvel_mean" "V mean" $2 $3; yy=$? ;; |
| 258 |
'Vsd') testoutput_var $1 "dynstat_vvel_sd" "V Std.Dev" $2 $3; yy=$? ;; |
| 259 |
'pt1mn'|'pt2mn'|'pt3mn'|'pt4mn'|'pt5mn') ii=`echo $xx | sed 's/pt//' | sed 's/..$//'` |
| 260 |
testoutput_var $1 "trcstat_ptracer0"$ii"_min" "p0"$ii"_min" $2 $3; yy=$? ;; |
| 261 |
'pt1mx'|'pt2mx'|'pt3mx'|'pt4mx'|'pt5mx') ii=`echo $xx | sed 's/pt//' | sed 's/..$//'` |
| 262 |
testoutput_var $1 "trcstat_ptracer0"$ii"_max" "p0"$ii"_max" $2 $3; yy=$? ;; |
| 263 |
'pt1av'|'pt2av'|'pt3av'|'pt4av'|'pt5av') ii=`echo $xx | sed 's/pt//' | sed 's/..$//'` |
| 264 |
testoutput_var $1 "trcstat_ptracer0"$ii"_mean" "p0"$ii"_mean" $2 $3; yy=$? ;; |
| 265 |
'pt1sd'|'pt2sd'|'pt3sd'|'pt4sd'|'pt5sd') ii=`echo $xx | sed 's/pt//' | sed 's/..$//'` |
| 266 |
testoutput_var $1 "trcstat_ptracer0"$ii"_sd" "p0"$ii"_StDv" $2 $3; yy=$? ;; |
| 267 |
'Qntmn') testoutput_var $1 "extforcing_qnet_min" "Qnet minimum" $2 $3; yy=$? ;; |
| 268 |
'Qntmx') testoutput_var $1 "extforcing_qnet_max" "Qnet maximum" $2 $3; yy=$? ;; |
| 269 |
'Qntav') testoutput_var $1 "extforcing_qnet_mean" "Qnet mean" $2 $3; yy=$? ;; |
| 270 |
'Qntsd') testoutput_var $1 "extforcing_qnet_sd" "Qnet Std.Dev" $2 $3; yy=$? ;; |
| 271 |
'aSImn') testoutput_var $1 "seaice_area_min" "SIce Area min" $2 $3; yy=$? ;; |
| 272 |
'aSImx') testoutput_var $1 "seaice_area_max" "SIce Area max" $2 $3; yy=$? ;; |
| 273 |
'aSIav') testoutput_var $1 "seaice_area_mean" "SIce Area mean" $2 $3; yy=$? ;; |
| 274 |
'aSIsd') testoutput_var $1 "seaice_area_sd" "SIce Area StDv" $2 $3; yy=$? ;; |
| 275 |
'hSImn') testoutput_var $1 "seaice_heff_min" "SIce Heff min" $2 $3; yy=$? ;; |
| 276 |
'hSImx') testoutput_var $1 "seaice_heff_max" "SIce Hell max" $2 $3; yy=$? ;; |
| 277 |
'hSIav') testoutput_var $1 "seaice_heff_mean" "SIce Hell mean" $2 $3; yy=$? ;; |
| 278 |
'hSIsd') testoutput_var $1 "seaice_heff_sd" "SIce Hell StDv" $2 $3; yy=$? ;; |
| 279 |
'AthSiG') testoutput_var $1 "thSI_Ice_Area_G" "thSIc Area Global" $2 $3; yy=$? ;; |
| 280 |
'AthSiS') testoutput_var $1 "thSI_Ice_Area_S" "thSIc Area South" $2 $3; yy=$? ;; |
| 281 |
'AthSiN') testoutput_var $1 "thSI_Ice_Area_N" "thSIc Area North" $2 $3; yy=$? ;; |
| 282 |
'HthSiG') testoutput_var $1 "thSI_IceH_ave_G" "thSIc H Global" $2 $3; yy=$? ;; |
| 283 |
'HthSiS') testoutput_var $1 "thSI_IceH_ave_S" "thSIc H South" $2 $3; yy=$? ;; |
| 284 |
'HthSiN') testoutput_var $1 "thSI_IceH_ave_N" "thSIc H North" $2 $3; yy=$? ;; |
| 285 |
*) yy=99; echo "WARNING: asking for var=$xx : not recognized !" 1>&2 ;; |
| 286 |
esac |
| 287 |
if test $xx = $sVar |
| 288 |
then allargs="$allargs > $yy <" |
| 289 |
else allargs="$allargs $yy" |
| 290 |
fi |
| 291 |
done |
| 292 |
|
| 293 |
nbVar=`echo $listVar | awk '{print NF}'` |
| 294 |
if [ $nbVar -lt $LEN_CHECK_LIST ] ; then |
| 295 |
#-- fill line (up to standard length) with dot: |
| 296 |
adNul=`expr $LEN_CHECK_LIST - $nbVar | awk '{for(i=1;i<=$1;i++){print "."}}'` |
| 297 |
echo $allargs $adNul |
| 298 |
else |
| 299 |
echo $allargs |
| 300 |
fi |
| 301 |
# <-- same processing for adjoint & forward test |
| 302 |
} |
| 303 |
|
| 304 |
genmakemodel() |
| 305 |
{ |
| 306 |
# genmakemodel directory |
| 307 |
if test "x$NOGENMAKE" = xt ; then |
| 308 |
echo "genmake skipped!" |
| 309 |
else |
| 310 |
if test "x$BASH" = x ; then |
| 311 |
GENMAKE2="../../../tools/genmake2" |
| 312 |
else |
| 313 |
GENMAKE2="$BASH ../../../tools/genmake2 -bash $BASH" |
| 314 |
fi |
| 315 |
( |
| 316 |
cd $1; |
| 317 |
command="$GENMAKE2 -ds -m $MAKE" |
| 318 |
if test "x$ADM" = xt ; then |
| 319 |
command="$command --mods=../code_ad" |
| 320 |
elif test "x$OADM" = xt ; then |
| 321 |
command="$command -adof ../../../tools/adjoint_options/adjoint_oad -mods '../code_oad ../../OpenAD/code_oad_all'" |
| 322 |
else |
| 323 |
command="$command --mods=../code" |
| 324 |
fi |
| 325 |
if test "x$OPTFILE" != xNONE ; then |
| 326 |
command="$command --optfile=$OPTFILE" |
| 327 |
fi |
| 328 |
if test "x$IEEE" != x ; then |
| 329 |
command="$command -ieee" |
| 330 |
fi |
| 331 |
if test "x$GSL" = xt ; then |
| 332 |
command="$command -gsl" |
| 333 |
fi |
| 334 |
if test "x$MPI" = xt ; then |
| 335 |
command="$command -mpi" |
| 336 |
fi |
| 337 |
if test "x$MULTI_THREAD" = xt ; then |
| 338 |
#- run multi-threaded using OpenMP: |
| 339 |
command="$command -omp" |
| 340 |
fi |
| 341 |
if test "x$TS" = xt ; then |
| 342 |
command="$command -ts" |
| 343 |
fi |
| 344 |
if test "x$PAPIS" = xt ; then |
| 345 |
command="$command -papis" |
| 346 |
else |
| 347 |
if test "x$PCLS" = xt ; then |
| 348 |
command="$command -pcls" |
| 349 |
fi |
| 350 |
fi |
| 351 |
printf 'genmake ... ' 1>&2 |
| 352 |
# $command > make.log 2>&1 |
| 353 |
eval $command > make.log 2>&1 |
| 354 |
RETVAL=$? |
| 355 |
# Reduce the size of the testing emails! |
| 356 |
head -100 Makefile > $CDIR/Makefile_head |
| 357 |
if test "x$RETVAL" != x0 ; then |
| 358 |
tail make.log |
| 359 |
echo "genmakemodel: genmake failed" 1>&2 |
| 360 |
cp genmake_* make.log $CDIR |
| 361 |
return 1 |
| 362 |
else |
| 363 |
echo "successful" 1>&2 |
| 364 |
fi |
| 365 |
) |
| 366 |
fi |
| 367 |
} |
| 368 |
|
| 369 |
makeclean() |
| 370 |
{ |
| 371 |
# makeclean directory |
| 372 |
if test "x$NOCLEAN" = xt ; then |
| 373 |
echo "make Clean skipped!" |
| 374 |
else |
| 375 |
( |
| 376 |
cd $1; |
| 377 |
#if test -e $OUTPUTFILE ; then rm -f $OUTPUTFILE ; fi |
| 378 |
if test -r Makefile ; then |
| 379 |
printf 'clean build-dir: make Clean ... ' 2>&1 |
| 380 |
$MAKE Clean >> make.log 2>&1 |
| 381 |
RETVAL=$? |
| 382 |
if test "x$RETVAL" != x0 ; then |
| 383 |
tail make.log |
| 384 |
echo "makeclean: \"make Clean\" failed" 1>&2 |
| 385 |
cp make.log $CDIR"/make.log" |
| 386 |
return 1 |
| 387 |
fi |
| 388 |
fi |
| 389 |
echo successful 1>&2 |
| 390 |
exit 0 |
| 391 |
) |
| 392 |
fi |
| 393 |
} |
| 394 |
|
| 395 |
run_clean() |
| 396 |
{ |
| 397 |
# run_clean directory |
| 398 |
if test "x$NOCLEAN" = xt ; then |
| 399 |
echo "run_clean skipped!" |
| 400 |
else |
| 401 |
( |
| 402 |
cd $1; |
| 403 |
printf 'clean run-dir ... ' 2>&1 |
| 404 |
# part of what is done after "make clean" when doing "make CLEAN" |
| 405 |
find . -name "*.meta" -exec rm {} \; |
| 406 |
find . -name "*.data" -exec rm {} \; |
| 407 |
find . -name "fort.*" -exec rm {} \; |
| 408 |
find . -type l -exec rm {} \; |
| 409 |
rm -f $EXECUTABLE *.txt STD* *diagnostics.log datetime |
| 410 |
rm -rf mnc_test_* |
| 411 |
rm -f *_MIT_CE_000.opt0000 costfunction*0000 |
| 412 |
echo successful 1>&2 |
| 413 |
exit 0 |
| 414 |
) |
| 415 |
fi |
| 416 |
} |
| 417 |
|
| 418 |
makedependmodel() |
| 419 |
{ |
| 420 |
# makedependmodel directory |
| 421 |
if test "x$NODEPEND" = xt ; then |
| 422 |
echo "make depend skipped!" |
| 423 |
else |
| 424 |
( |
| 425 |
cd $1; |
| 426 |
printf 'make depend ... ' 1>&2 |
| 427 |
$MAKE depend >> make.log 2>&1 |
| 428 |
RETVAL=$? |
| 429 |
if test "x$RETVAL" != x0 ; then |
| 430 |
tail make.log |
| 431 |
echo "makedependmodel: make depend failed" 1>&2 |
| 432 |
cp make.log $CDIR"/make.log" |
| 433 |
return 1 |
| 434 |
else |
| 435 |
echo successful 1>&2 |
| 436 |
fi |
| 437 |
) |
| 438 |
fi |
| 439 |
} |
| 440 |
|
| 441 |
makemodel() |
| 442 |
{ |
| 443 |
# makemodel directory |
| 444 |
( |
| 445 |
cd $1; |
| 446 |
if test -r Makefile ; then |
| 447 |
printf 'make ... ' 1>&2 |
| 448 |
if test "x$ADM" = xt ; then |
| 449 |
$MAKE adall >> make.log 2>&1 |
| 450 |
elif test "x$OADM" = xt ; then |
| 451 |
$MAKE adAll >> make.log 2>&1 |
| 452 |
else |
| 453 |
if test "x$JOBS" = x ; then |
| 454 |
$MAKE >> make.log 2>&1 |
| 455 |
else |
| 456 |
$MAKE -j $JOBS >> make.log 2>&1 |
| 457 |
fi |
| 458 |
fi |
| 459 |
RETVAL=$? |
| 460 |
if test "x$RETVAL" != x0 ; then |
| 461 |
tail make.log |
| 462 |
echo failed 1>&2 |
| 463 |
cp make.log $CDIR"/make.log" |
| 464 |
return 1 |
| 465 |
else |
| 466 |
echo successful 1>&2 |
| 467 |
fi |
| 468 |
fi |
| 469 |
) |
| 470 |
} |
| 471 |
|
| 472 |
symlink_mpifiles() |
| 473 |
{ |
| 474 |
# Put special links so that MPI specific files are used |
| 475 |
# This MUST be invoked between makeclean and makelinks because |
| 476 |
# the Makefile will link to non-mpi files by default |
| 477 |
|
| 478 |
dir=$1 |
| 479 |
code_dir=$2 |
| 480 |
BUILD_DIR=$dir/$3 |
| 481 |
CODE_DIR=$dir/$code_dir |
| 482 |
|
| 483 |
# These are files that should replace their counter-part when using -mpi |
| 484 |
MPI_FILES=`(cd $CODE_DIR; find . -name "*_mpi" -print)` |
| 485 |
|
| 486 |
# Is this an MPI run? |
| 487 |
if test "x$MPI" = xt ; then |
| 488 |
# YES: We symbolically link these files to the build |
| 489 |
# dir so long as there is no real file in place |
| 490 |
for ii in $MPI_FILES ; do |
| 491 |
i=`echo $ii | sed 's:^\./::'` |
| 492 |
name=`echo $i | sed 's:_mpi::' ` |
| 493 |
cmp $CODE_DIR/$i $BUILD_DIR/$name > /dev/null 2>&1 |
| 494 |
RETVAL=$? |
| 495 |
if test "x$RETVAL" != x0 ; then |
| 496 |
if ! test -f $BUILD_DIR/$i ; then |
| 497 |
#echo Linking $name to $i |
| 498 |
(cd $BUILD_DIR; ln -sf ../$code_dir/$i $name) |
| 499 |
fi |
| 500 |
fi |
| 501 |
done |
| 502 |
else |
| 503 |
# NO: We undo any _mpi symbolically linked files |
| 504 |
for ii in $MPI_FILES ; do |
| 505 |
i=`echo $ii | sed 's:^\./::'` |
| 506 |
name=`echo $i | sed 's:_mpi::' ` |
| 507 |
if test -L $BUILD_DIR/$name ; then |
| 508 |
cmp $BUILD_DIR/$name "../$code_dir/$name"_mpi > /dev/null 2>&1 |
| 509 |
RETVAL=$? |
| 510 |
if test "x$RETVAL" = x0 ; then |
| 511 |
#echo Un-linking $name from $linktarg |
| 512 |
rm -f $BUILD_DIR/$name |
| 513 |
fi |
| 514 |
fi |
| 515 |
done |
| 516 |
fi |
| 517 |
|
| 518 |
} |
| 519 |
|
| 520 |
linkdata() |
| 521 |
{ |
| 522 |
# linkdata run_dir input_dir_1 input_dir_2 ... |
| 523 |
# |
| 524 |
# symbolically link data files to run directory |
| 525 |
if test -d $1 ; then |
| 526 |
( |
| 527 |
cd $1 ; shift |
| 528 |
if test -r "../"$1"/eedata.mth" ; then |
| 529 |
# found eedata.mth in 1rst input dir and it is readable |
| 530 |
if test "x$MULTI_THREAD" = "xt" ; then |
| 531 |
# multi-threaded test: remove symbolic link & link eedata.mth |
| 532 |
if test -h eedata ; then rm -f eedata ; fi |
| 533 |
if test ! -r eedata ; then |
| 534 |
ln -sf "../"$1"/eedata.mth" eedata ; |
| 535 |
printf 'eedata.mth ' 1>&2 |
| 536 |
fi |
| 537 |
else |
| 538 |
# not multi-threaded test: remove eedata symbolic link |
| 539 |
if test -h eedata ; then rm -f eedata ; fi |
| 540 |
fi |
| 541 |
fi |
| 542 |
prevDir='NONE' |
| 543 |
for ldir in $* ; do |
| 544 |
if test -d "../"$ldir -a $ldir != $prevDir ; then |
| 545 |
printf 'ldir='${ldir} 1>&2 |
| 546 |
files=`( cd "../"$ldir ; ls -1 | grep -v CVS )` |
| 547 |
for i in $files ; do |
| 548 |
if test ! -d "../"$ldir/$i ; then |
| 549 |
if test ! -r $i ; then |
| 550 |
printf ' '$i 1>&2 |
| 551 |
ln -sf "../"$ldir"/"$i $i |
| 552 |
fi |
| 553 |
fi |
| 554 |
done |
| 555 |
if test -x "../"$ldir"/"prepare_run ; then |
| 556 |
"../"$ldir"/"prepare_run |
| 557 |
fi |
| 558 |
printf ' ; ' 1>&2 |
| 559 |
fi |
| 560 |
prevDir=$ldir |
| 561 |
done |
| 562 |
) |
| 563 |
fi |
| 564 |
} |
| 565 |
|
| 566 |
runmodel() |
| 567 |
{ |
| 568 |
# runmodel directory |
| 569 |
# |
| 570 |
# runs "$COMMAND in "directory" |
| 571 |
# (where "$COMMAND" is relative to "directory") |
| 572 |
( |
| 573 |
cd $1 |
| 574 |
printf 'runmodel in %s ...' $1 1>&2 |
| 575 |
# make output.txt |
| 576 |
echo |
| 577 |
if test -L $EXECUTABLE -a -x "../"$builddir"/"$EXECUTABLE ; then |
| 578 |
diff -q $EXECUTABLE "../"$builddir"/"$EXECUTABLE > /dev/null 2>&1 |
| 579 |
outD=$? ; if test $outD != 0 ; then rm -f $EXECUTABLE ; fi |
| 580 |
fi |
| 581 |
if test ! -x $EXECUTABLE -a -x "../"$builddir"/"$EXECUTABLE ; then |
| 582 |
echo " link" $EXECUTABLE "from dir ../"$builddir > run.log_tmp |
| 583 |
ln -sf "../"$builddir"/"$EXECUTABLE . |
| 584 |
fi |
| 585 |
if test ! -x $EXECUTABLE ; then |
| 586 |
rm -f $RUNLOG ; touch $RUNLOG |
| 587 |
if test -f run.log_tmp ; then cat run.log_tmp >> $RUNLOG ; fi |
| 588 |
echo " no executable:" $EXECUTABLE >> $RUNLOG |
| 589 |
RETVAL=8 |
| 590 |
ENDVAL=-1 |
| 591 |
else |
| 592 |
if test ! -f $OUTPUTFILE -o $OUTPUTFILE -ot $EXECUTABLE ; then |
| 593 |
# output do not exist or is older than executable: |
| 594 |
rm -f $RUNLOG ; touch $RUNLOG |
| 595 |
if test -f run.log_tmp ; then cat run.log_tmp >> $RUNLOG ; fi |
| 596 |
( eval $COMMAND ) >> $RUNLOG 2>&1 |
| 597 |
RETVAL=$? |
| 598 |
else |
| 599 |
RETVAL=0 |
| 600 |
if test -f $RUNLOG ; then |
| 601 |
if test -f run.log_tmp ; then cat run.log_tmp >> $RUNLOG ; fi |
| 602 |
echo "---------->> $OUTPUTFILE is up to date " >> $RUNLOG 2>&1 |
| 603 |
else |
| 604 |
touch $RUNLOG |
| 605 |
if test -f run.log_tmp ; then cat run.log_tmp >> $RUNLOG ; fi |
| 606 |
echo "---------->> $OUTPUTFILE is up to date " >> $RUNLOG 2>&1 |
| 607 |
echo " no previous $RUNLOG: assume NORMAL END" >> $RUNLOG 2>&1 |
| 608 |
fi |
| 609 |
fi |
| 610 |
ENDVAL=`cat $RUNLOG | grep -v 'ABNORMAL END' | grep -c 'NORMAL END'` |
| 611 |
fi |
| 612 |
rm -f run.log_tmp |
| 613 |
#if test "x$RETVAL" = x0 ; then |
| 614 |
if [ $RETVAL -eq 0 -a $ENDVAL -gt 0 ] ; then |
| 615 |
tail $RUNLOG |
| 616 |
echo successful 1>&2 |
| 617 |
# === Reduce the size of the testing emails! |
| 618 |
#cp $OUTPUTFILE $CDIR"/"$OUTPUTFILE |
| 619 |
if test -s STDERR.0000 ; then cp STDERR.0000 $CDIR"/STDERR.0000" ; fi |
| 620 |
return 0 |
| 621 |
else |
| 622 |
tail $RUNLOG |
| 623 |
echo failed '(run:' $RETVAL ' end:' $ENDVAL ')' 1>&2 |
| 624 |
cp $RUNLOG $CDIR"/"$RUNLOG |
| 625 |
if test -s STDERR.0000 ; then cp STDERR.0000 $CDIR"/STDERR.0000" ; fi |
| 626 |
return 1 |
| 627 |
fi |
| 628 |
) |
| 629 |
} |
| 630 |
|
| 631 |
createcodelet() |
| 632 |
{ |
| 633 |
# create codelet for comparing model output |
| 634 |
|
| 635 |
printf "creating the comparison code (using CC=$CC)... " |
| 636 |
cat > tr_cmpnum.c <<EOF |
| 637 |
#include <stdio.h> |
| 638 |
#include <math.h> |
| 639 |
int main( int argc, char** argv ) { |
| 640 |
int linnum,cmplin,best,lncnt; |
| 641 |
double a,b,abave,relerr; |
| 642 |
best = -22; |
| 643 |
lncnt = 0; |
| 644 |
while( 1 & ( (lncnt+=1) < 999 ) ) { |
| 645 |
scanf("%d", &linnum); |
| 646 |
if (linnum == -1) break; |
| 647 |
scanf("%lf", &a); scanf("%lf", &b); |
| 648 |
abave = 0.5*(fabs(a)+fabs(b)); |
| 649 |
if ( abave == abave ) { |
| 650 |
if (abave > 0.0) { |
| 651 |
relerr=fabs(a-b)/abave; |
| 652 |
if (relerr > 0.0) { cmplin = (int)rint(log10(relerr)); } |
| 653 |
else { cmplin = -16 ; } |
| 654 |
best = (best > cmplin) ? best : cmplin; } |
| 655 |
else { cmplin = -22 ; } |
| 656 |
/* printf("%d ; %lf ; %lf\n",cmplin,a,b); */ |
| 657 |
} |
| 658 |
else { |
| 659 |
/* printf("%lf ; %lf ; %lf\n",abave,a,b); */ |
| 660 |
break; } |
| 661 |
} |
| 662 |
if (lncnt == 999) best=-29; |
| 663 |
if (linnum != -1) best=-99; |
| 664 |
printf("%d\n", -best); |
| 665 |
return 0; |
| 666 |
} |
| 667 |
EOF |
| 668 |
$CC -o tr_cmpnum tr_cmpnum.c -lm |
| 669 |
|
| 670 |
if [ -x ./tr_cmpnum ]; then |
| 671 |
echo "OK" |
| 672 |
return 0 |
| 673 |
else |
| 674 |
echo |
| 675 |
echo "ERROR: failed to compile comparison code -- please specify" |
| 676 |
echo " a C compiler using the CC environment variable." |
| 677 |
exit 1 |
| 678 |
fi |
| 679 |
} |
| 680 |
|
| 681 |
formatresults() |
| 682 |
{ |
| 683 |
# formatresults expt genmake depend make run results* |
| 684 |
|
| 685 |
nm=$1 |
| 686 |
printf '%s %s %s %s' $2 $3 $4 $5 |
| 687 |
shift; shift; shift; shift; shift; |
| 688 |
listPrt=$@ |
| 689 |
listRes=`echo $listPrt | sed 's/>//' | sed 's/<//'` |
| 690 |
xx=`echo $listPrt | sed 's/.*>//' | sed 's/<.*//' | awk '{print $1}'` |
| 691 |
printf '%3s' $listPrt |
| 692 |
# line below does not work on hp-ux_ia64 : do those substitutions later on |
| 693 |
# printf '%3s' $listPrt | sed 's/ 99/ --/g' | sed 's/ > />/' | sed 's/ < /</' |
| 694 |
|
| 695 |
if [ $xx = '..' ]; then |
| 696 |
printf ' N/O ' |
| 697 |
elif [ $xx = '--' ]; then |
| 698 |
printf ' N/O ' |
| 699 |
elif [ $xx = 99 ]; then |
| 700 |
printf ' N/O ' |
| 701 |
else |
| 702 |
if [ $xx -ge $MATCH_CRIT ]; then |
| 703 |
printf ' pass' |
| 704 |
else |
| 705 |
printf ' FAIL' |
| 706 |
fi |
| 707 |
fi |
| 708 |
printf ' %s' $nm |
| 709 |
printf '\n' |
| 710 |
|
| 711 |
} |
| 712 |
|
| 713 |
scandirs() |
| 714 |
{ |
| 715 |
if [ $# -eq 1 ]; then |
| 716 |
for arg in * ; do |
| 717 |
test -f $arg/$1 && echo $arg |
| 718 |
done |
| 719 |
else |
| 720 |
echo $* |
| 721 |
fi |
| 722 |
} |
| 723 |
|
| 724 |
|
| 725 |
############################################################################### |
| 726 |
|
| 727 |
|
| 728 |
# Default properties |
| 729 |
debug=0 |
| 730 |
verbose=1 |
| 731 |
clean=0 |
| 732 |
|
| 733 |
IEEE=true |
| 734 |
if test "x$MITGCM_IEEE" != x ; then |
| 735 |
IEEE=$MITGCM_IEEE |
| 736 |
fi |
| 737 |
GSL=f |
| 738 |
|
| 739 |
CLEANUP=f |
| 740 |
QUICK=f |
| 741 |
NOGENMAKE=f |
| 742 |
NOCLEAN=f |
| 743 |
NODEPEND=f |
| 744 |
POSTCLEAN=f |
| 745 |
|
| 746 |
BASH= |
| 747 |
OPTFILE=NONE |
| 748 |
ADDRESSES= |
| 749 |
TESTDIRS= |
| 750 |
SKIPDIRS= |
| 751 |
MPACKDIR="../tools/mpack-1.6" |
| 752 |
HAVE_MPACK= |
| 753 |
MPACK= |
| 754 |
COMMAND= |
| 755 |
if test "x$MAKE" = x ; then |
| 756 |
MAKE=make |
| 757 |
fi |
| 758 |
if test "x$CC" = x ; then |
| 759 |
CC=cc |
| 760 |
fi |
| 761 |
JOBS= |
| 762 |
MPI=f |
| 763 |
MULTI_THREAD=f |
| 764 |
OUTDIR= |
| 765 |
DELDIR= |
| 766 |
|
| 767 |
ADM= |
| 768 |
OADM= |
| 769 |
|
| 770 |
# list of pTracers to check for monitor output |
| 771 |
PTRACERS_NUM="1 2 3 4 5" |
| 772 |
|
| 773 |
MATCH_CRIT=13 |
| 774 |
|
| 775 |
printf "parsing options... " |
| 776 |
|
| 777 |
ac_prev= |
| 778 |
for ac_option ; do |
| 779 |
|
| 780 |
# If the previous option needs an argument, assign it. |
| 781 |
if test -n "$ac_prev"; then |
| 782 |
eval "$ac_prev=\$ac_option" |
| 783 |
ac_prev= |
| 784 |
continue |
| 785 |
fi |
| 786 |
|
| 787 |
ac_optarg=`expr "x$ac_option" : 'x[^=]*=\(.*\)'` |
| 788 |
|
| 789 |
case $ac_option in |
| 790 |
|
| 791 |
-help | --help | -h | --h) |
| 792 |
usage ;; |
| 793 |
|
| 794 |
-optfile | --optfile | -of | --of) |
| 795 |
ac_prev=OPTFILE ;; |
| 796 |
-optfile=* | --optfile=* | -of=* | --of=*) |
| 797 |
OPTFILE=$ac_optarg ;; |
| 798 |
|
| 799 |
-addr | --addr | -a | --a) |
| 800 |
ac_prev=ADDRESSES ;; |
| 801 |
-addr=* | --addr=*) |
| 802 |
ADDRESSES=$ac_optarg ;; |
| 803 |
-mpackdir | --mpackdir | -mpd | --mpd) |
| 804 |
ac_prev=MPACKDIR ;; |
| 805 |
-mpackdir=* | --mpackdir=* | -mpd=* | --mpd=*) |
| 806 |
MPACKDIR=$ac_optarg ;; |
| 807 |
|
| 808 |
-tdir | --tdir | -t | --t) |
| 809 |
ac_prev=TESTDIRS ;; |
| 810 |
-tdir=* | --tdir=*) |
| 811 |
TESTDIRS=$ac_optarg ;; |
| 812 |
|
| 813 |
-skipdir | --skipdir | -skd | --skd) |
| 814 |
ac_prev=SKIPDIRS ;; |
| 815 |
-skipdir=* | --skipdir=*) |
| 816 |
SKIPDIRS=$ac_optarg ;; |
| 817 |
|
| 818 |
-bash | --bash | -b | --b) |
| 819 |
ac_prev=BASH ;; |
| 820 |
-bash=* | --bash=*) |
| 821 |
BASH=$ac_optarg ;; |
| 822 |
|
| 823 |
-command | --command | -c | --c) |
| 824 |
ac_prev=COMMAND ;; |
| 825 |
-command=* | --command=*) |
| 826 |
COMMAND=$ac_optarg ;; |
| 827 |
|
| 828 |
-make | --make | -m | --m) |
| 829 |
ac_prev=MAKE ;; |
| 830 |
-make=* | --make=*) |
| 831 |
MAKE=$ac_optarg ;; |
| 832 |
|
| 833 |
-odir | --odir) |
| 834 |
ac_prev=OUTDIR ;; |
| 835 |
-odir=* | --odir=*) |
| 836 |
OUTDIR=$ac_optarg ;; |
| 837 |
|
| 838 |
-ptracers | --ptracers | -ptr | --ptr) |
| 839 |
ac_prev=PTRACERS_NUM ;; |
| 840 |
-ptracers=* | --ptracers=* | -ptr=* | --ptr=*) |
| 841 |
PTRACERS_NUM=$ac_optarg ;; |
| 842 |
|
| 843 |
-match | --match ) ac_prev=MATCH_CRIT ;; |
| 844 |
-match=* | --match=* ) MATCH_CRIT=$ac_optarg ;; |
| 845 |
|
| 846 |
-j) ac_prev=JOBS ;; |
| 847 |
-j=*) JOBS=$ac_optarg ;; |
| 848 |
|
| 849 |
-clean | --clean) |
| 850 |
CLEANUP=t ; DELDIR=t ;; |
| 851 |
|
| 852 |
-quick | --quick | -q | --q) |
| 853 |
QUICK=t ;; |
| 854 |
-nogenmake | --nogenmake | -ng | --ng) |
| 855 |
NOGENMAKE=t ;; |
| 856 |
-noclean | --noclean | -nc | --nc) |
| 857 |
NOCLEAN=t ;; |
| 858 |
-nodepend | --nodepend | -nd | --nd) |
| 859 |
NODEPEND=t ;; |
| 860 |
|
| 861 |
-postclean | --postclean | -pc | --pc) |
| 862 |
POSTCLEAN=t ;; |
| 863 |
|
| 864 |
-mpi) MPI=t ;; |
| 865 |
|
| 866 |
-mth) MULTI_THREAD=t ;; |
| 867 |
|
| 868 |
-adm | -ad) ADM=t ;; |
| 869 |
|
| 870 |
-oad) OADM=t; NODEPEND=t ;; |
| 871 |
|
| 872 |
-ieee) IEEE=true ;; |
| 873 |
-noieee) IEEE= ;; |
| 874 |
-gsl) GSL=t ;; |
| 875 |
|
| 876 |
-verbose) verbose=2 ;; |
| 877 |
-debug) debug=1 ;; |
| 878 |
-quiet) verbose=0 ;; |
| 879 |
|
| 880 |
-deldir | -dd) DELDIR=t ;; |
| 881 |
|
| 882 |
-ts) TS=t;; |
| 883 |
|
| 884 |
-papis) PAPIS=t;; |
| 885 |
|
| 886 |
-pcls) PCL=t;; |
| 887 |
|
| 888 |
-*) |
| 889 |
echo "Error: unrecognized option: "$ac_option |
| 890 |
usage |
| 891 |
;; |
| 892 |
|
| 893 |
*) |
| 894 |
echo "Error: unrecognized argument: "$ac_option |
| 895 |
usage |
| 896 |
;; |
| 897 |
|
| 898 |
esac |
| 899 |
|
| 900 |
done |
| 901 |
|
| 902 |
if test "x$QUICK" = xt ; then |
| 903 |
NOGENMAKE=t |
| 904 |
NOCLEAN=t |
| 905 |
NODEPEND=t |
| 906 |
fi |
| 907 |
|
| 908 |
#- setting for forward or ADM testing |
| 909 |
if test "x$ADM" = xt ; then |
| 910 |
code_dir=code_ad |
| 911 |
inputdir=input_ad |
| 912 |
ref_outp="output_adm.txt" |
| 913 |
EXECUTABLE="mitgcmuv_ad" |
| 914 |
elif test "x$OADM" = xt ; then |
| 915 |
code_dir=code_oad |
| 916 |
inputdir=input_oad |
| 917 |
ref_outp="output_oadm.txt" |
| 918 |
EXECUTABLE="mitgcmuv_ad" |
| 919 |
else |
| 920 |
code_dir=code |
| 921 |
inputdir=input |
| 922 |
ref_outp="output.txt" |
| 923 |
EXECUTABLE="mitgcmuv" |
| 924 |
fi |
| 925 |
|
| 926 |
if test "x$TESTDIRS" = x ; then |
| 927 |
LIST=`scandirs results/$ref_outp` |
| 928 |
else |
| 929 |
#- expand group of experiments: |
| 930 |
LIST=" " |
| 931 |
for xx in $TESTDIRS |
| 932 |
do |
| 933 |
case $xx in |
| 934 |
'basic') LIST=${LIST}" aim.5l_cs hs94.128x64x5 ideal_2D_oce" |
| 935 |
LIST=${LIST}" lab_sea tutorial_baroclinic_gyre" |
| 936 |
LIST=${LIST}" tutorial_global_oce_latlon tutorial_plume_on_slope" |
| 937 |
;; |
| 938 |
'tutorials') |
| 939 |
LIST=${LIST}" "`ls | grep 'tutorial_'` ;; |
| 940 |
*) LIST=${LIST}" "$xx ;; |
| 941 |
esac |
| 942 |
done |
| 943 |
fi |
| 944 |
#echo 'LIST='${LIST}'<' |
| 945 |
#- skip dirs, remove duplicate and non-directory: |
| 946 |
TESTDIRS=" " |
| 947 |
count=0 |
| 948 |
for xx in $LIST |
| 949 |
do |
| 950 |
yy=`echo $SKIPDIRS | grep -c $xx` |
| 951 |
if test $yy = 0 ; then |
| 952 |
if test -d $xx ; then |
| 953 |
yy=`echo $TESTDIRS | grep -c $xx` |
| 954 |
if test $yy = 0 ; then TESTDIRS=${TESTDIRS}" "$xx ; fi |
| 955 |
else count=1 ; |
| 956 |
echo ""; echo -n " -- skip \"$xx\" (not a directory !)" |
| 957 |
fi |
| 958 |
else |
| 959 |
if test $count = 1 ; then echo -n ", \"$xx\"" |
| 960 |
else count=1 ; echo "" ; echo -n " skip: \"$xx\"" |
| 961 |
fi |
| 962 |
fi |
| 963 |
done |
| 964 |
if test $count = 1 ; then echo "" ; echo -n " ... " ; fi |
| 965 |
#echo 'TESTDIRS='${TESTDIRS}'<' |
| 966 |
|
| 967 |
if test "x$OPTFILE" = xNONE -a "x$MITGCM_OF" != x ; then |
| 968 |
OPTFILE=$MITGCM_OF |
| 969 |
fi |
| 970 |
|
| 971 |
RUNLOG="run.log" |
| 972 |
OUTPUTFILE=$ref_outp |
| 973 |
if test "x$COMMAND" = x ; then |
| 974 |
COMMAND="./$EXECUTABLE > $OUTPUTFILE" |
| 975 |
fi |
| 976 |
if test "x$MPI" = xt ; then |
| 977 |
OUTPUTFILE="STDOUT.0000" |
| 978 |
fi |
| 979 |
|
| 980 |
echo "OK (COMMAND= $COMMAND )" |
| 981 |
|
| 982 |
# set the Default List of output variables to be checked: |
| 983 |
# (use default or load experiment-specific list from file "tr_checklist") |
| 984 |
# content : 1rst = main variable used to decide if it pass or FAIL |
| 985 |
# others = number of matching digits to be printed in summary.txt |
| 986 |
if test "x$ADM" = x -a "x$OADM" = x; then |
| 987 |
DEF_CHECK_LIST='PS PS T+ S+ U+ V+ pt1+ pt2+ pt3+ pt4+ pt5+' |
| 988 |
EMPTY_RESULTS='.. .. .. .. .. .. .. .. .. .. .. .. .. .. .. .. ..' |
| 989 |
LEN_CHECK_LIST=`echo $DEF_CHECK_LIST | sed 's/ [a-zA-Z0-9]*+/&mn &mx &av &sd/g' | awk '{print NF-1}'` |
| 990 |
ii=`echo $EMPTY_RESULTS | awk '{print NF}'` |
| 991 |
EMPTY_RESULTS=$EMPTY_RESULTS`expr $LEN_CHECK_LIST - $ii | awk 'BEGIN{FS=":"}{for(i=1;i<=$1;i++){printf " ."}}'` |
| 992 |
else |
| 993 |
DEF_CHECK_LIST='Grad Cost Grad' |
| 994 |
EMPTY_RESULTS='.. ..' |
| 995 |
LEN_CHECK_LIST=`echo $DEF_CHECK_LIST | sed 's/ [a-zA-Z0-9]*+/&mn &mx &av &sd/g' | awk '{print NF-1}'` |
| 996 |
fi |
| 997 |
|
| 998 |
# create the FORTRAN comparison code |
| 999 |
createcodelet |
| 1000 |
|
| 1001 |
# build the mpack utility (if ADDRESSES = NONE, do it to test the build) |
| 1002 |
if test "x$ADDRESSES" = x ; then |
| 1003 |
echo "skipping mpack build" |
| 1004 |
else |
| 1005 |
build_mpack |
| 1006 |
fi |
| 1007 |
|
| 1008 |
# Create a uniquely named directory to store results |
| 1009 |
CMDLINE=$0 |
| 1010 |
for xx in "$@" ; do nw=`echo $xx | wc -w` |
| 1011 |
if test $nw = '1' ; then CMDLINE="$CMDLINE $xx" |
| 1012 |
else CMDLINE="$CMDLINE '$xx'" ; fi |
| 1013 |
done |
| 1014 |
#for xx in "$@" ; do CMDLINE="$CMDLINE '$xx'" ; done |
| 1015 |
MACH=`hostname` |
| 1016 |
UNAMEA=`uname -a` |
| 1017 |
DATE=`date +%Y%m%d` |
| 1018 |
BASE="tr_"$MACH"_"$DATE"_" |
| 1019 |
if test "x$OUTDIR" != x ; then |
| 1020 |
BASE="tr_"$OUTDIR"_"$DATE"_" |
| 1021 |
else |
| 1022 |
short_name=`hostname | sed 's/\..*$//'` |
| 1023 |
BASE="tr_"$short_name"_"$DATE"_" |
| 1024 |
fi |
| 1025 |
DNUM=0 |
| 1026 |
DRESULTS="$BASE$DNUM" |
| 1027 |
while test -e $DRESULTS ; do |
| 1028 |
DNUM=$(( $DNUM + 1 )) |
| 1029 |
DRESULTS="$BASE$DNUM" |
| 1030 |
done |
| 1031 |
mkdir $DRESULTS |
| 1032 |
RETVAL=$? |
| 1033 |
if test "x$RETVAL" != x0 ; then |
| 1034 |
echo "ERROR: Can't create results directory \"./$DRESULTS\"" |
| 1035 |
exit 1 |
| 1036 |
fi |
| 1037 |
SUMMARY="$DRESULTS/summary.txt" |
| 1038 |
start_date=`date` |
| 1039 |
echo $start_date > $SUMMARY |
| 1040 |
echo 'run:' $CMDLINE >> $SUMMARY |
| 1041 |
echo 'on :' $UNAMEA >> $SUMMARY |
| 1042 |
|
| 1043 |
of_path= |
| 1044 |
if test "x$OPTFILE" != xNONE ; then |
| 1045 |
if test -r $OPTFILE ; then |
| 1046 |
# get the path |
| 1047 |
path=${OPTFILE%/*} |
| 1048 |
if test "x$path" = x ; then |
| 1049 |
of_path=`pwd` |
| 1050 |
else |
| 1051 |
of_path=`( cd $path > /dev/null 2>&1 ; pwd )` |
| 1052 |
fi |
| 1053 |
file=${OPTFILE##*/} |
| 1054 |
OPTFILE=$of_path/$file |
| 1055 |
cp $OPTFILE $DRESULTS |
| 1056 |
echo >> $SUMMARY |
| 1057 |
echo " OPTFILE=$OPTFILE" >> $SUMMARY |
| 1058 |
else |
| 1059 |
echo | tee $SUMMARY |
| 1060 |
echo "ERROR: can't read OPTFILE=\"$OPTFILE\"" | tee $SUMMARY |
| 1061 |
exit 1 |
| 1062 |
fi |
| 1063 |
else |
| 1064 |
echo >> $SUMMARY |
| 1065 |
echo "No \"OPTFILE\" was explicitly specified by testreport," >> $SUMMARY |
| 1066 |
echo " so the genmake default will be used." >> $SUMMARY |
| 1067 |
fi |
| 1068 |
echo |
| 1069 |
echo >> $SUMMARY |
| 1070 |
if test "x$ADM" = x -a "x$OADM" = x; then |
| 1071 |
if [ $MATCH_CRIT -lt 10 ] ; |
| 1072 |
then line_0="default "$MATCH_CRIT ; |
| 1073 |
else line_0="default "$MATCH_CRIT ; fi |
| 1074 |
line_0="$line_0 ----T----- ----S----- ----U----- ----V-----" |
| 1075 |
# line_0=" ----T----- ----S----- ----U----- ----V-----" |
| 1076 |
line_1="G D M c m s m s m s m s" |
| 1077 |
line_2="E p a R g m m e . m m e . m m e . m m e ." |
| 1078 |
line_3="N n k u 2 i a a d i a a d i a a d i a a d" |
| 1079 |
line_4="2 d e n d n x n . n x n . n x n . n x n ." |
| 1080 |
for ii in $PTRACERS_NUM ; do |
| 1081 |
line_0="$line_0 --PTR 0"$ii"--" |
| 1082 |
line_1="$line_1 m s" |
| 1083 |
line_2="$line_2 m m e ." |
| 1084 |
line_3="$line_3 i a a d" |
| 1085 |
line_4="$line_4 n x n ." |
| 1086 |
done |
| 1087 |
echo "$line_0" | tee -a $SUMMARY |
| 1088 |
echo "$line_1" | tee -a $SUMMARY |
| 1089 |
echo "$line_2" | tee -a $SUMMARY |
| 1090 |
echo "$line_3" | tee -a $SUMMARY |
| 1091 |
echo "$line_4" | tee -a $SUMMARY |
| 1092 |
echo " " | tee -a $SUMMARY |
| 1093 |
else |
| 1094 |
echo "ADJOINT=true" >> $SUMMARY |
| 1095 |
echo >> $SUMMARY |
| 1096 |
if [ $MATCH_CRIT -lt 10 ] ; |
| 1097 |
then line_0="default "$MATCH_CRIT ; |
| 1098 |
else line_0="default "$MATCH_CRIT ; fi |
| 1099 |
echo "$line_0" | tee -a $SUMMARY |
| 1100 |
cat << EOF | tee -a $SUMMARY |
| 1101 |
G D M C G |
| 1102 |
E p a R o r |
| 1103 |
N n k u s a |
| 1104 |
2 d e n t d |
| 1105 |
|
| 1106 |
EOF |
| 1107 |
fi |
| 1108 |
|
| 1109 |
# ...and each test directory... |
| 1110 |
for dir in $TESTDIRS ; do |
| 1111 |
|
| 1112 |
# set builddir & rundir: |
| 1113 |
builddir="build" |
| 1114 |
if test ! -d $dir/$builddir ; then mkdir $dir/$builddir ; fi |
| 1115 |
rundir="run" |
| 1116 |
if test ! -d $dir/$rundir ; then |
| 1117 |
rundir=$builddir |
| 1118 |
fi |
| 1119 |
CODE_DIR=$dir/$code_dir |
| 1120 |
BUILD_DIR=$dir/$builddir |
| 1121 |
|
| 1122 |
# Cleanup only! |
| 1123 |
if test "x$CLEANUP" = xt ; then |
| 1124 |
if test -r $BUILD_DIR/Makefile ; then |
| 1125 |
echo ' ------ clean dir:' $dir/$builddir |
| 1126 |
( cd $BUILD_DIR ; make CLEAN ) |
| 1127 |
fi |
| 1128 |
if test -d $dir/$rundir/CVS ; then |
| 1129 |
echo ' ------ clean dir:' $dir/$rundir |
| 1130 |
run_clean $dir/$rundir |
| 1131 |
fi |
| 1132 |
( |
| 1133 |
cd $dir |
| 1134 |
rm -rf tr_run.* |
| 1135 |
) |
| 1136 |
continue |
| 1137 |
fi |
| 1138 |
|
| 1139 |
# Verify that the testdir exists and contains previous |
| 1140 |
# results in the correct location--or skip this directory! |
| 1141 |
fout=$dir"/results/"$ref_outp |
| 1142 |
if test ! -r $fout ; then |
| 1143 |
echo "can't read \"$fout\" -- skipping $dir" |
| 1144 |
continue |
| 1145 |
fi |
| 1146 |
|
| 1147 |
# Check for specific files for particular type of run |
| 1148 |
|
| 1149 |
if test ! -r $CODE_DIR"/SIZE.h_mpi" -a "x$MPI" = "xt" ; then |
| 1150 |
echo "can't find \"$CODE_DIR/SIZE.h_mpi\" -- skipping $dir" |
| 1151 |
continue |
| 1152 |
fi |
| 1153 |
if test ! -r $dir"/input/eedata.mth" -a "x$MULTI_THREAD" = "xt" ; then |
| 1154 |
echo "can't find \"$dir/input/eedata.mth\" -- skipping $dir" |
| 1155 |
continue |
| 1156 |
fi |
| 1157 |
|
| 1158 |
# Check whether there are "extra runs" for this testdir |
| 1159 |
extra_runs= |
| 1160 |
ex_run_dirs=`( cd $dir ; echo $inputdir.* )` |
| 1161 |
#echo "ex_run_dirs='$ex_run_dirs'" |
| 1162 |
for exd in $ex_run_dirs ; do |
| 1163 |
name=`echo $exd | sed -e "s/$inputdir\.//"` |
| 1164 |
refExOut=`echo $ref_outp | sed "s/\./.${name}./"` |
| 1165 |
outf="$dir/results/$refExOut" |
| 1166 |
if test -f $outf -a -r $outf ; then |
| 1167 |
if test "x$MULTI_THREAD" = "xt" ; then |
| 1168 |
if test -r $dir"/"$exd"/eedata.mth" ; then |
| 1169 |
extra_runs="$extra_runs $name" |
| 1170 |
#else echo $dir"/"$exd"/eedata.mth: not found" |
| 1171 |
fi |
| 1172 |
else |
| 1173 |
extra_runs="$extra_runs $name" |
| 1174 |
fi |
| 1175 |
fi |
| 1176 |
done |
| 1177 |
|
| 1178 |
echo "-------------------------------------------------------------------------------" |
| 1179 |
echo |
| 1180 |
if test "x$extra_runs" = "x" ; then |
| 1181 |
echo "Experiment: $dir" |
| 1182 |
else |
| 1183 |
echo "Experiment: $dir ; extra_runs=$extra_runs" |
| 1184 |
fi |
| 1185 |
echo |
| 1186 |
unset genmake makedepend make run |
| 1187 |
results=$EMPTY_RESULTS |
| 1188 |
|
| 1189 |
# Create an output dir for each OPTFILE/tdir combination |
| 1190 |
rel_CDIR=$DRESULTS"/"$dir |
| 1191 |
mkdir $rel_CDIR |
| 1192 |
CDIR=`pwd`"/$rel_CDIR" |
| 1193 |
|
| 1194 |
if test "x$CLEANUP" = xt ; then |
| 1195 |
echo '====>>> this is to check that we never go through this part <<< ===' |
| 1196 |
makeclean $dir/$builddir \ |
| 1197 |
&& run_clean $dir/$rundir |
| 1198 |
else |
| 1199 |
genmakemodel $dir/$builddir && genmake=Y \ |
| 1200 |
&& makeclean $dir/$builddir \ |
| 1201 |
&& run_clean $dir/$rundir \ |
| 1202 |
&& symlink_mpifiles $dir $code_dir $builddir \ |
| 1203 |
&& makedependmodel $dir/$builddir && makedepend=Y \ |
| 1204 |
&& makemodel $dir/$builddir && make=Y \ |
| 1205 |
&& linkdata $dir/$rundir $inputdir input \ |
| 1206 |
&& runmodel $dir/$rundir && run=Y \ |
| 1207 |
&& results=`testoutput_run $dir $rundir $ref_outp` |
| 1208 |
fi |
| 1209 |
|
| 1210 |
echo |
| 1211 |
fres=`formatresults $dir ${genmake:-N} ${makedepend:-N} ${make:-N} ${run:-N} $results` |
| 1212 |
echo |
| 1213 |
echo "$fres" | sed 's/ 99/ --/g' | sed 's/ > />/' | sed 's/ < /</' >> $SUMMARY |
| 1214 |
touch $CDIR"/summary.txt" |
| 1215 |
echo "fresults='$fres'" | sed 's/ 99/ --/g' >> $CDIR"/summary.txt" |
| 1216 |
echo "MACH='$MACH'" >> $CDIR"/summary.txt" |
| 1217 |
echo "UNAMEA='$UNAMEA'" >> $CDIR"/summary.txt" |
| 1218 |
echo "DATE='$DATE'" >> $CDIR"/summary.txt" |
| 1219 |
echo "tdir='$dir'" >> $CDIR"/summary.txt" |
| 1220 |
if test "x$ADM" = xt ; then |
| 1221 |
head -1 $dir/$builddir/taf_ad.log >> $CDIR"/summary.txt" |
| 1222 |
grep -A3 'Seconds in section "ALL' $dir/$rundir/$OUTPUTFILE \ |
| 1223 |
>> $CDIR"/summary.txt" |
| 1224 |
fi |
| 1225 |
|
| 1226 |
for ex in $extra_runs ; do |
| 1227 |
unset run |
| 1228 |
results=$EMPTY_RESULTS |
| 1229 |
# reference output file |
| 1230 |
refExOut=`echo $ref_outp | sed "s/\./.${ex}./g"` |
| 1231 |
# Create an output dir for each OPTFILE/tdir.ex combination |
| 1232 |
rel_CDIR=$DRESULTS"/"$dir"."$ex |
| 1233 |
mkdir $rel_CDIR |
| 1234 |
CDIR=`pwd`"/$rel_CDIR" |
| 1235 |
test ! -e "$dir/tr_run.$ex" && mkdir "$dir/tr_run.$ex" |
| 1236 |
run_clean $dir/tr_run.$ex |
| 1237 |
linkdata $dir/tr_run.$ex $inputdir.$ex $inputdir input |
| 1238 |
runmodel $dir/tr_run.$ex && run=Y \ |
| 1239 |
&& results=`testoutput_run $dir tr_run.$ex $refExOut` |
| 1240 |
fres=`formatresults $dir ${genmake:-N} ${makedepend:-N} ${make:-N} ${run:-N} $results` |
| 1241 |
fres="$fres.$ex" |
| 1242 |
echo |
| 1243 |
echo "$fres" | sed 's/ 99/ --/g' | sed 's/ > />/' | sed 's/ < /</' >> $SUMMARY |
| 1244 |
touch $CDIR"/summary.txt" |
| 1245 |
echo "fresults='$fres'" | sed 's/ 99/ --/g' >> $CDIR"/summary.txt" |
| 1246 |
echo "MACH='$MACH'" >> $CDIR"/summary.txt" |
| 1247 |
echo "UNAMEA='$UNAMEA'" >> $CDIR"/summary.txt" |
| 1248 |
echo "DATE='$DATE'" >> $CDIR"/summary.txt" |
| 1249 |
echo "tdir='$dir.$ex'" >> $CDIR"/summary.txt" |
| 1250 |
if test "x$ADM" = xt ; then |
| 1251 |
head -1 $dir/$builddir/taf_ad.log >> $CDIR"/summary.txt" |
| 1252 |
grep -A3 'Seconds in section "ALL' $dir/tr_run.$ex/$OUTPUTFILE \ |
| 1253 |
>> $CDIR"/summary.txt" |
| 1254 |
fi |
| 1255 |
if test "x$POSTCLEAN" = xt ; then |
| 1256 |
run_clean $dir/tr_run.$ex |
| 1257 |
fi |
| 1258 |
done |
| 1259 |
|
| 1260 |
#postclean $dir/$builddir |
| 1261 |
if test "x$POSTCLEAN" = xt ; then |
| 1262 |
makeclean $dir/$builddir \ |
| 1263 |
&& run_clean $dir/$rundir |
| 1264 |
fi |
| 1265 |
|
| 1266 |
echo "-------------------------------------------------------------------------------" |
| 1267 |
|
| 1268 |
done |
| 1269 |
|
| 1270 |
printf "Start time: " >> $SUMMARY |
| 1271 |
echo "$start_date" >> $SUMMARY |
| 1272 |
printf "End time: " >> $SUMMARY |
| 1273 |
date >> $SUMMARY |
| 1274 |
|
| 1275 |
# If addresses were supplied and mpack built successfully, then try |
| 1276 |
# to send email using mpack. |
| 1277 |
if test "x$ADDRESSES" = xNONE -o "x$ADDRESSES" = x ; then |
| 1278 |
echo "No results email was sent." |
| 1279 |
else |
| 1280 |
if test "x$HAVE_MPACK" = xt ; then |
| 1281 |
tar -cf $DRESULTS".tar" $DRESULTS > /dev/null 2>&1 \ |
| 1282 |
&& gzip $DRESULTS".tar" \ |
| 1283 |
&& $MPACK -s MITgcm-test -m 3555000 $DRESULTS".tar.gz" $ADDRESSES |
| 1284 |
RETVAL=$? |
| 1285 |
if test "x$RETVAL" != x0 ; then |
| 1286 |
echo |
| 1287 |
echo "Warning: The tar, gzip, & mpack step failed. Please send email" |
| 1288 |
echo " to <MITgcm-support@mitgcm.org> for help. You may copy the " |
| 1289 |
echo " summary of results from the directory \"$DRESULTS\"." |
| 1290 |
echo |
| 1291 |
else |
| 1292 |
echo |
| 1293 |
echo "An email containing results was sent to the following addresses:" |
| 1294 |
echo " \"$ADDRESSES\"" |
| 1295 |
echo |
| 1296 |
fi |
| 1297 |
test -f $DRESULTS".tar" && rm -f $DRESULTS".tar" |
| 1298 |
test -f $DRESULTS".tar.gz" && rm -f $DRESULTS".tar.gz" |
| 1299 |
fi |
| 1300 |
fi |
| 1301 |
|
| 1302 |
rm -f tr_cmpnum.c tr_cmpnum |
| 1303 |
|
| 1304 |
if test "x$CLEANUP" != xt ; then |
| 1305 |
cat $SUMMARY | sed 's/ \. \. \. \. \. \. \. \. \. \. \. \. //' |
| 1306 |
if test -e tr_out.txt ; then |
| 1307 |
mv tr_out.txt tr_out.txt.old |
| 1308 |
fi |
| 1309 |
cat $SUMMARY | sed '/^[YN] [YN] [YN] [YN]/ s/ \. //g' > tr_out.txt |
| 1310 |
fi |
| 1311 |
|
| 1312 |
if test "x$DELDIR" = xt ; then |
| 1313 |
rm -rf $DRESULTS |
| 1314 |
fi |
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