--- MITgcm/verification/testreport	2004/12/09 15:52:33	1.55
+++ MITgcm/verification/testreport	2004/12/16 20:25:11	1.61
@@ -1,6 +1,6 @@
 #! /usr/bin/env bash
 #
-#  $Header: /home/ubuntu/mnt/e9_copy/MITgcm/verification/testreport,v 1.55 2004/12/09 15:52:33 edhill Exp $
+#  $Header: /home/ubuntu/mnt/e9_copy/MITgcm/verification/testreport,v 1.61 2004/12/16 20:25:11 edhill Exp $
 #  $Name:  $
 #
 
@@ -450,7 +450,7 @@
 	    if test "x$ADM" = x ; then
 		files=`( cd ../input ; ls -1 | grep -v CVS )`
 		for i in $files ; do
-		    if test ! -d "../input/"$i ; then
+		    if test ! -d "../input/"$i -a ! -f $i ; then
 			ln -sf "../input/"$i $i
 		    fi
 		done
@@ -520,7 +520,7 @@
 int main( int argc, char** argv )  {
   int linnum,best,lncnt;
   double a,b,abave,relerr;
-  best = -16;
+  best = -22;
   lncnt = 0;
   while( 1 & (lncnt+=1) < 999 )  {
     scanf("%d", &linnum);
@@ -529,13 +529,9 @@
     abave = 0.5*(fabs(a)+fabs(b));
     if (abave > 0.0) {
       relerr=fabs(a-b)/abave;
-      if (relerr > 0.0) {
-        linnum = (int)log10(relerr);
-        best = (best > linnum) ? best : linnum;
-      }
-    }
-    else {
-      if (best == -16)  best = -22;
+      if (relerr > 0.0) { linnum = (int)log10(relerr); }
+      else { linnum = -16 ; }
+      best = (best > linnum) ? best : linnum;
     }
   }
   if (lncnt == 999) best=-29;
@@ -543,14 +539,15 @@
   return 0;
 }
 EOF
-    cc -o tmp_cmpnum tmp_cmpnum.c -lm
+    $CC -o tmp_cmpnum tmp_cmpnum.c -lm
 
     if [ -x ./tmp_cmpnum ]; then
 	echo "OK"
 	return 0
     else
 	echo
-	echo "ERROR: failed to compile comparison code" 
+	echo "ERROR: failed to compile comparison code -- please specify" 
+	echo "  a C compiler using the CC environment variable."
 	exit 1
     fi
 }
@@ -639,7 +636,12 @@
 HAVE_MPACK=
 MPACK="$MPACKDIR/mpack"
 COMMAND=
-MAKE=make
+if test "x$MAKE" = x ; then
+    MAKE=make
+fi
+if test "x$CC" = x ; then
+    CC=cc
+fi
 JOBS=
 MPI=f
 DELDIR=
@@ -968,27 +970,25 @@
 	echo "DATE='$DATE'" >> $CDIR"/summary.txt"
 	echo "tdir='$dir'" >> $CDIR"/summary.txt"
 
-	OLD_COMMAND=$COMMAND
-	# COMMAND="./mitgcmuv > output.txt"
 	for ex in $extra_runs ; do
-	    test -e "$dir/tr_run.$ex" && rm -rf "$dir/tr_run.$ex"
-	    mkdir "$dir/tr_run.$ex"
-	    links=`( cd "$dir/input" > /dev/null 2>&1 ; ls -1 | grep -v CVS )`
-	    (
-		cd "$dir/tr_run.$ex"
-		for i in $links; do
-		    ln -s ../input/$i $i
-		done
-	    )
-	    links=`( cd "$dir/input.$ex" > /dev/null 2>&1 ; ls -1 | grep -v CVS )`
-	    ( 
-		cd "$dir/tr_run.$ex"
-		for i in $links; do
-		    test -e $i  &&  rm -f $i
-		    ln -s ../input.$ex/$i $i
-		done
-		ln -s ../$builddir/mitgcmuv mitgcmuv
-	    )
+	    test ! -e "$dir/tr_run.$ex" && mkdir "$dir/tr_run.$ex"
+	    for ldir in build input input.$ex ; do
+		(
+		    cd "$dir/$ldir" > /dev/null 2>&1
+		    ls -1 2>/dev/null \
+			| sed -e 's|^CVS$||g' | sed -e 's|^output.txt$||g'
+		) > tr_exrun_links
+		(
+		    cd "$dir/tr_run.$ex"
+		    cat ../../tr_exrun_links | while read i ; do
+			if test ! "x$i" = x ; then
+			    test -e $i  &&  rm -f $i
+			    ln -s "../"$ldir"/"$i $i
+			fi
+		    done
+		)
+		test -e tr_exrun_links  &&  rm -f tr_exrun_links
+	    done
 	    runmodel $dir/tr_run.$ex && run=Y \
 		&& results=`testoutput $dir tr_run.$ex "."$ex`
 	    fres=`printf '%s %s %s %s' ${genmake:-N} ${makedepend:-N} ${make:-N} ${run:-N}`
@@ -1002,7 +1002,6 @@
 	    echo "DATE='$DATE'" >> $CDIR"/summary.txt"
 	    echo "tdir='$dir'" >> $CDIR"/summary.txt"
 	done
-	COMMAND=$OLD_COMMAND
     else
 	fres=`printf '%s %s %s %s' ${genmake:-N} ${makedepend:-N} ${make:-N} ${run:-N}`
 	fres=$fres"$results   $dir"