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#! /usr/bin/env bash |
2 |
# |
3 |
# $Header: /u/gcmpack/MITgcm/verification/testreport,v 1.121 2009/01/30 20:08:09 jmc Exp $ |
4 |
# $Name: $ |
5 |
# |
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|
7 |
usage() |
8 |
{ |
9 |
echo |
10 |
echo "Usage: $0 [OPTIONS]" |
11 |
echo |
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echo "where possible OPTIONS are:" |
13 |
echo " (-help|-h) print usage" |
14 |
echo " (-mth) run multi-threaded (using eedata.mth)" |
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echo " (-mpi) compile and run using MPI" |
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echo " (-ieee|-noieee) if possible, use IEEE compiler flags" |
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echo " (DEF=\"-ieee\")" |
18 |
echo " (-gsl) compile with \"-gsl\" flag" |
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echo " (-of=|-optfile=)STRING list of optfiles to use" |
20 |
echo " (-a|-addr) STRING list of email recipients" |
21 |
echo " (DEF=\"\" no email is sent)" |
22 |
echo " (-mpd|-mpackdir) DIR location of the mpack utility" |
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echo " (DEF=\"../tools/mpack-1.6\")" |
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echo " (-t|-tdir) STRING list of group and/or exp. dirs to test" |
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echo " (recognized groups: basic, tutorials)" |
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echo " (DEF=\"\" which test all)" |
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echo " (-skd|-skipdir) STRING list of exp. dirs to skip" |
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echo " (DEF=\"\" which test all)" |
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echo " (-b|-bash) STRING preferred location of a \"bash\" or" |
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echo " Bourne-compatible \"sh\" shell" |
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echo " (DEF=\"\" for \"bash\")" |
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echo " (-adm|-ad) perform an adjoint run" |
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echo " (-oad) perform an OpenAD adjoint run" |
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echo " (-command) STRING command to run" |
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echo " (DEF=\"make output.txt\")" |
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echo " (-m|-make) STRING command to use for \"make\"" |
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echo " (DEF=\"make\")" |
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echo " (-odir) STRING used to build output directory name" |
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echo " (DEF=\"hostname\")" |
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echo " (-ptr|-ptracers) STRING specify which ptracers to test" |
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echo " (DEF=\"1 2 3 4 5\")" |
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echo " (-match) NUMBER Matching Criteria (number of digits)" |
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echo " (DEF=\"12\")" |
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echo " (-j) JOBS use \"make -j JOBS\" for parallel builds" |
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echo " (-clean) *ONLY* run \"make CLEAN\"" |
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echo " (-quick|-q) same as \"-nogenmake -noclean -nodepend\"" |
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echo " (-nogenmake|-ng) skip the genmake stage" |
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echo " (-noclean|-nc) skip the \"make clean\" stage" |
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echo " (-nodepend|-nd) skip the \"make depend\" stage" |
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echo " (-deldir|-dd) on success, delete the output directory" |
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echo " (-ts) provide timing information per timestep" |
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echo " (-papis) provide MFlop/s per timestep using PAPI" |
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echo " (-pcls) provide MFlop/s per timestep using PCL" |
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echo |
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echo "and where STRING can be a whitespace-delimited list" |
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echo "such as:" |
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echo |
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echo " -t 'exp0 exp2 exp3' " |
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echo " -addr='abc@123.com testing@home.org'" |
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echo |
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echo "provided that the expression is properly quoted within the current" |
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echo "shell (note the use of single quotes to protect white space)." |
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echo |
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exit 1 |
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} |
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|
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# build the mpack utility |
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build_mpack() |
69 |
{ |
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printf "building the mpack utility... " |
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MPACK="$MPACKDIR/mpack" |
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if test ! -x $MPACK ; then |
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if test ! -d $MPACKDIR ; then |
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echo |
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echo "Error: can't find \"$MPACKDIR\"" |
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echo " are you sure this program is being run in the correct " |
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echo " (that is, \"MITGCM_ROOT\verification\") directory?" |
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echo |
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HAVE_MPACK=f |
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fi |
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if test "x$CC" = x ; then |
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export CC=cc |
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fi |
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printf "building mpack (using CC=$CC)... " |
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( cd $MPACKDIR && ./configure && $MAKE ) > tr_build_mpack.out 2>&1 |
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RETVAL=$? |
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if test "x$RETVAL" != x0 ; then |
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echo |
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echo "Error building the mpack tools at: $MPACK_DIR" |
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echo |
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HAVE_MPACK=f |
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else |
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rm -f tr_build_mpack.out |
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HAVE_MPACK=t |
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echo "done" |
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fi |
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else |
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HAVE_MPACK=t |
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echo "already exist" |
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fi |
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} |
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|
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testoutput_var() |
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{ |
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# testoutput_var dir s1 label subdir reference_output |
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# |
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# compares 1 variable output selected from file $dir/$subdir/$OUTPUTFILE |
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# with same output from reference file $dir/results/$reference_output |
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# using search strings s1 and text label |
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|
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if [ $debug -gt 0 ]; then |
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echo testoutput_var: grep "$2" $1/$4/$OUTPUTFILE 1>&2 |
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fi |
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if [ -r $1/$4/$OUTPUTFILE ]; then |
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grep "$2" $1/$4/$OUTPUTFILE | sed 's/.*=//' | cat -n > tmp1.txt |
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lncntA=`wc -l tmp1.txt | awk '{print $1}' ` |
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if [ $lncntA -lt 2 ]; then |
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if [ $verbose -gt 0 ]; then |
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echo Not enough lines of output when searching for "$2" 1>&2 |
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fi |
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return 99 |
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fi |
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else |
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echo testoutput_var: $OUTPUTFILE from model run was not readable 1>&2 |
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return 99 |
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fi |
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if [ $debug -gt 0 ]; then |
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echo testoutput_var: grep "$2" $1/results/$5 1>&2 |
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fi |
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grep "$2" $1/results/$5 | sed 's/.*=//' | cat -n > tmp2.txt |
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lncntB=`wc -l tmp2.txt | awk '{print $1}' ` |
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if [ $lncntB -lt 2 ]; then |
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if [ $verbose -gt 0 ]; then |
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echo Not enough lines of output when searching for "$2" 1>&2 |
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fi |
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return 99 |
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fi |
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if [ $lncntA -ne $lncntB ]; then |
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if [ $verbose -gt 0 ]; then |
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echo Not same Nb of lines when searching for "$2" ":" $lncntA $lncntB 1>&2 |
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fi |
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return 99 |
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fi |
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has_nan=`cat tmp1.txt | grep -i nan | wc -l` |
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if [ $has_nan -gt 0 ] ; then |
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echo testoutput_var: $OUTPUTFILE contains $has_nan NaN values 1>&2 |
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return 99 |
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fi |
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has_inf=`cat tmp1.txt | grep -i inf | wc -l` |
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if [ $has_inf -gt 0 ] ; then |
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echo testoutput_var: $OUTPUTFILE contains $has_inf Inf values 1>&2 |
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return 99 |
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fi |
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if [ $debug -gt 0 ]; then |
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echo testoutput_var: join tmp1.txt tmp2.txt 1>&2 |
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fi |
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join tmp1.txt tmp2.txt | awk '{print $1 " " $2 " " $3}' > tmp3.txt |
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if [ $debug -gt 0 ]; then |
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echo testoutput_var: compare_lines 1>&2 |
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fi |
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if [ $verbose -gt 1 ]; then |
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cat tmp3.txt 1>&2 |
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fi |
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echo "-1" >> tmp3.txt |
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# On the SGI O3K (*not* the O2K), "cat -n" inserts a ":" after the line number |
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cat tmp3.txt | sed -e 's|:||g' > tmp4.txt |
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digits_of_similarity=`./tr_cmpnum < tmp4.txt` |
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if [ $digits_of_similarity -eq 99 ]; then |
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if [ $verbose -gt 0 ]; then |
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echo testoutput_var: No comparison was available for \"$3\" 1>&2 |
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fi |
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digits_of_similarity=99 |
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else |
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if [ $verbose -gt 0 ]; then |
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echo There were $digits_of_similarity decimal places of similarity for \"$3\" 1>&2 |
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fi |
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fi |
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rm -f tmp1.txt tmp2.txt tmp3.txt tmp4.txt |
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|
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return $digits_of_similarity |
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} |
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|
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testoutput_run() |
184 |
{ |
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# testoutput_run directory subdir reference_output |
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# |
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# test output from 1 run in "directory" |
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# --> same processing for adjoint & forward test |
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# default list of output variables to be checked: |
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# 1rst : main variable used to decide if it pass or FAIL |
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# others : number of matching digits to be printed in summary.txt |
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listChk=$DEF_CHECK_LIST |
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# load experiment-specific list from file "tr_checklist" (if it exist) |
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if test -r $1/$2/tr_checklist ; then listChk=`cat $1/$2/tr_checklist` ; fi |
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sVar=`echo $listChk | awk '{print $1}'` |
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# remove 1rst var and expand the list: + => min max mean s.d |
197 |
listVar=`echo $listChk | sed 's/ [a-zA-Z0-9]*+/&mn &mx &av &sd/g' \ |
198 |
| sed 's/+//g' | sed "s/^$sVar//"` |
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if [ $debug -gt 0 ]; then echo "testoutput_run: listVar(I)='$listVar'" 1>&2 ; fi |
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# check for ptracer output in reference_output file : |
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outpref=$1/results/$3 |
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ptr_mon="trcstat_ptracerXX_min trcstat_ptracerXX_max" |
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ptr_mon="$ptr_mon trcstat_ptracerXX_mean trcstat_ptracerXX_sd" |
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for ii in $PTRACERS_NUM ; do |
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ptrfound=0 |
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for jj in $ptr_mon ; do |
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name=`eval "echo $jj | sed -e 's|XX|0"$ii"|g'"` |
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tst=`grep $name $outpref | wc -l | awk '{print $1}'` |
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if test ! "x$tst" = x0 ; then ptrfound=1 ; fi |
210 |
done |
211 |
if test $ptrfound = '1' ; then |
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eval "HAVE_PTR0"$ii"=t" |
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else |
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eval "HAVE_PTR0"$ii"=f" |
215 |
if test "x$ADM" = x -a "x$OADM" = x; then |
216 |
# remove this ptr from the list of output variable to check |
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# echo "-- ptr test=" $tst "number of var=" `echo $listVar | awk '{print NF}'` 1>&2 |
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listVar=`echo "$listVar" | sed "s/ pt$ii..//g"` |
219 |
fi |
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fi |
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# eval 'echo "HAVE_PTR0'$ii' = $HAVE_PTR0'$ii'"' 1>&2 |
222 |
done |
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tst=`echo $sVar $listVar | awk '{ for(i=2;i<=NF;i++){if($i==$1)t+=1}; print t }'` |
224 |
if test $tst != 1 ; then |
225 |
if test $tst = 0 ; then echo "==> WARNING: selected var >$sVar< not found" 1>&2 |
226 |
else echo "==> WARNING: found selected var >$sVar< $tst times" 1>&2 ; fi |
227 |
echo "==> WARNING: in checked list:" $listVar 1>&2 |
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#- put it back once: |
229 |
listVar=" $sVar "`echo "$listVar " | sed "s/ $sVar / /g"` |
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fi |
231 |
if [ $debug -gt 0 ]; then echo "testoutput_run: listVar(M)='$listVar'" 1>&2 ; fi |
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echo "listVar='$listVar'" > $CDIR"/summary.txt" |
233 |
allargs="" |
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for xx in $listVar |
235 |
do |
236 |
case $xx in |
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'PS') if [ $debug -gt 0 ] |
238 |
then echo testoutput_run: testoutput_var $1 cg2d_init_res 1>&2 ; fi |
239 |
testoutput_var $1 "cg2d_init_res" "Press. Solver (cg2d)" $2 $3; yy=$? |
240 |
if [ $debug -gt 0 ] ; then echo testoutput_run: cg2dres=$yy 1>&2 ; fi ;; |
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'Cost') testoutput_var $1 "ADM precision_derivative_cost" "ADM Cost" $2 $3; yy=$? ;; |
242 |
'Grad') testoutput_var $1 "ADM precision_derivative_grad" "ADM Grad" $2 $3; yy=$? ;; |
243 |
'Tmn') testoutput_var $1 "dynstat_theta_min" "Theta minimum" $2 $3; yy=$? ;; |
244 |
'Tmx') testoutput_var $1 "dynstat_theta_max" "Theta maximum" $2 $3; yy=$? ;; |
245 |
'Tav') testoutput_var $1 "dynstat_theta_mean" "Theta mean" $2 $3; yy=$? ;; |
246 |
'Tsd') testoutput_var $1 "dynstat_theta_sd" "Theta Std.Dev" $2 $3; yy=$? ;; |
247 |
'Smn') testoutput_var $1 "dynstat_salt_min" "Salt minimum" $2 $3; yy=$? ;; |
248 |
'Smx') testoutput_var $1 "dynstat_salt_max" "Salt maximum" $2 $3; yy=$? ;; |
249 |
'Sav') testoutput_var $1 "dynstat_salt_mean" "Salt mean" $2 $3; yy=$? ;; |
250 |
'Ssd') testoutput_var $1 "dynstat_salt_sd" "Salt Std.Dev" $2 $3; yy=$? ;; |
251 |
'Umn') testoutput_var $1 "dynstat_uvel_min" "U minimum" $2 $3; yy=$? ;; |
252 |
'Umx') testoutput_var $1 "dynstat_uvel_max" "U maximum" $2 $3; yy=$? ;; |
253 |
'Uav') testoutput_var $1 "dynstat_uvel_mean" "U mean" $2 $3; yy=$? ;; |
254 |
'Usd') testoutput_var $1 "dynstat_uvel_sd" "U Std.Dev" $2 $3; yy=$? ;; |
255 |
'Vmn') testoutput_var $1 "dynstat_vvel_min" "V minimum" $2 $3; yy=$? ;; |
256 |
'Vmx') testoutput_var $1 "dynstat_vvel_max" "V maximum" $2 $3; yy=$? ;; |
257 |
'Vav') testoutput_var $1 "dynstat_vvel_mean" "V mean" $2 $3; yy=$? ;; |
258 |
'Vsd') testoutput_var $1 "dynstat_vvel_sd" "V Std.Dev" $2 $3; yy=$? ;; |
259 |
'pt1mn'|'pt2mn'|'pt3mn'|'pt4mn'|'pt5mn') ii=`echo $xx | sed 's/pt//' | sed 's/..$//'` |
260 |
testoutput_var $1 "trcstat_ptracer0"$ii"_min" "p0"$ii"_min" $2 $3; yy=$? ;; |
261 |
'pt1mx'|'pt2mx'|'pt3mx'|'pt4mx'|'pt5mx') ii=`echo $xx | sed 's/pt//' | sed 's/..$//'` |
262 |
testoutput_var $1 "trcstat_ptracer0"$ii"_max" "p0"$ii"_max" $2 $3; yy=$? ;; |
263 |
'pt1av'|'pt2av'|'pt3av'|'pt4av'|'pt5av') ii=`echo $xx | sed 's/pt//' | sed 's/..$//'` |
264 |
testoutput_var $1 "trcstat_ptracer0"$ii"_mean" "p0"$ii"_mean" $2 $3; yy=$? ;; |
265 |
'pt1sd'|'pt2sd'|'pt3sd'|'pt4sd'|'pt5sd') ii=`echo $xx | sed 's/pt//' | sed 's/..$//'` |
266 |
testoutput_var $1 "trcstat_ptracer0"$ii"_sd" "p0"$ii"_StDv" $2 $3; yy=$? ;; |
267 |
'Qntmn') testoutput_var $1 "extforcing_qnet_min" "Qnet minimum" $2 $3; yy=$? ;; |
268 |
'Qntmx') testoutput_var $1 "extforcing_qnet_max" "Qnet maximum" $2 $3; yy=$? ;; |
269 |
'Qntav') testoutput_var $1 "extforcing_qnet_mean" "Qnet mean" $2 $3; yy=$? ;; |
270 |
'Qntsd') testoutput_var $1 "extforcing_qnet_sd" "Qnet Std.Dev" $2 $3; yy=$? ;; |
271 |
'aSImn') testoutput_var $1 "seaice_area_min" "SIce Area min" $2 $3; yy=$? ;; |
272 |
'aSImx') testoutput_var $1 "seaice_area_max" "SIce Area max" $2 $3; yy=$? ;; |
273 |
'aSIav') testoutput_var $1 "seaice_area_mean" "SIce Area mean" $2 $3; yy=$? ;; |
274 |
'aSIsd') testoutput_var $1 "seaice_area_sd" "SIce Area StDv" $2 $3; yy=$? ;; |
275 |
'hSImn') testoutput_var $1 "seaice_heff_min" "SIce Heff min" $2 $3; yy=$? ;; |
276 |
'hSImx') testoutput_var $1 "seaice_heff_max" "SIce Hell max" $2 $3; yy=$? ;; |
277 |
'hSIav') testoutput_var $1 "seaice_heff_mean" "SIce Hell mean" $2 $3; yy=$? ;; |
278 |
'hSIsd') testoutput_var $1 "seaice_heff_sd" "SIce Hell StDv" $2 $3; yy=$? ;; |
279 |
'AthSiG') testoutput_var $1 "thSI_Ice_Area_G" "thSIc Area Global" $2 $3; yy=$? ;; |
280 |
'AthSiS') testoutput_var $1 "thSI_Ice_Area_S" "thSIc Area South" $2 $3; yy=$? ;; |
281 |
'AthSiN') testoutput_var $1 "thSI_Ice_Area_N" "thSIc Area North" $2 $3; yy=$? ;; |
282 |
'HthSiG') testoutput_var $1 "thSI_IceH_ave_G" "thSIc H Global" $2 $3; yy=$? ;; |
283 |
'HthSiS') testoutput_var $1 "thSI_IceH_ave_S" "thSIc H South" $2 $3; yy=$? ;; |
284 |
'HthSiN') testoutput_var $1 "thSI_IceH_ave_N" "thSIc H North" $2 $3; yy=$? ;; |
285 |
*) yy=99; echo "WARNING: asking for var=$xx : not recognized !" 1>&2 ;; |
286 |
esac |
287 |
if test $xx = $sVar |
288 |
then allargs="$allargs > $yy <" |
289 |
else allargs="$allargs $yy" |
290 |
fi |
291 |
done |
292 |
|
293 |
nbVar=`echo $listVar | awk '{print NF}'` |
294 |
if [ $nbVar -lt $LEN_CHECK_LIST ] ; then |
295 |
#-- fill line (up to standard length) with dot: |
296 |
adNul=`expr $LEN_CHECK_LIST - $nbVar | awk '{for(i=1;i<=$1;i++){print "."}}'` |
297 |
echo $allargs $adNul |
298 |
else |
299 |
echo $allargs |
300 |
fi |
301 |
# <-- same processing for adjoint & forward test |
302 |
} |
303 |
|
304 |
genmakemodel() |
305 |
{ |
306 |
# genmakemodel directory |
307 |
if test "x$NOGENMAKE" = xt ; then |
308 |
echo "genmake skipped!" |
309 |
else |
310 |
if test "x$BASH" = x ; then |
311 |
GENMAKE2="../../../tools/genmake2" |
312 |
else |
313 |
GENMAKE2="$BASH ../../../tools/genmake2 -bash $BASH" |
314 |
fi |
315 |
( |
316 |
cd $1; |
317 |
command="$GENMAKE2 -ds -m $MAKE" |
318 |
if test "x$ADM" = xt ; then |
319 |
command="$command --mods=../code_ad" |
320 |
elif test "x$OADM" = xt ; then |
321 |
command="$command -adof ../../../tools/adjoint_options/adjoint_oad -mods '../code_oad ../../OpenAD/code_oad_all'" |
322 |
else |
323 |
command="$command --mods=../code" |
324 |
fi |
325 |
if test "x$OPTFILE" != xNONE ; then |
326 |
command="$command --optfile=$OPTFILE" |
327 |
fi |
328 |
if test "x$IEEE" != x ; then |
329 |
command="$command -ieee" |
330 |
fi |
331 |
if test "x$GSL" = xt ; then |
332 |
command="$command -gsl" |
333 |
fi |
334 |
if test "x$MPI" = xt ; then |
335 |
command="$command -mpi" |
336 |
fi |
337 |
if test "x$MULTI_THREAD" = xt ; then |
338 |
#- run multi-threaded using OpenMP: |
339 |
command="$command -omp" |
340 |
fi |
341 |
if test "x$TS" = xt ; then |
342 |
command="$command -ts" |
343 |
fi |
344 |
if test "x$PAPIS" = xt ; then |
345 |
command="$command -papis" |
346 |
else |
347 |
if test "x$PCLS" = xt ; then |
348 |
command="$command -pcls" |
349 |
fi |
350 |
fi |
351 |
printf 'genmake ... ' 1>&2 |
352 |
# $command > make.log 2>&1 |
353 |
eval $command > make.log 2>&1 |
354 |
RETVAL=$? |
355 |
# Reduce the size of the testing emails! |
356 |
head -100 Makefile > $CDIR/Makefile_head |
357 |
if test "x$RETVAL" != x0 ; then |
358 |
tail make.log |
359 |
echo "genmakemodel: genmake failed" 1>&2 |
360 |
cp genmake_* make.log $CDIR |
361 |
return 1 |
362 |
else |
363 |
echo "successful" 1>&2 |
364 |
fi |
365 |
) |
366 |
fi |
367 |
} |
368 |
|
369 |
makeclean() |
370 |
{ |
371 |
# makeclean directory |
372 |
if test "x$NOCLEAN" = xt ; then |
373 |
echo "make Clean skipped!" |
374 |
else |
375 |
( |
376 |
cd $1; |
377 |
#if test -e $OUTPUTFILE ; then rm -f $OUTPUTFILE ; fi |
378 |
if test -r Makefile ; then |
379 |
printf 'clean build-dir: make Clean ... ' 2>&1 |
380 |
$MAKE Clean >> make.log 2>&1 |
381 |
RETVAL=$? |
382 |
if test "x$RETVAL" != x0 ; then |
383 |
tail make.log |
384 |
echo "makeclean: \"make Clean\" failed" 1>&2 |
385 |
cp make.log $CDIR"/make.log" |
386 |
return 1 |
387 |
fi |
388 |
fi |
389 |
echo successful 1>&2 |
390 |
exit 0 |
391 |
) |
392 |
fi |
393 |
} |
394 |
|
395 |
run_clean() |
396 |
{ |
397 |
# run_clean directory |
398 |
if test "x$NOCLEAN" = xt ; then |
399 |
echo "run_clean skipped!" |
400 |
else |
401 |
( |
402 |
cd $1; |
403 |
printf 'clean run-dir ... ' 2>&1 |
404 |
# part of what is done after "make clean" when doing "make CLEAN" |
405 |
find . -name "*.meta" -exec rm {} \; |
406 |
find . -name "*.data" -exec rm {} \; |
407 |
find . -name "fort.*" -exec rm {} \; |
408 |
find . -type l -exec rm {} \; |
409 |
rm -f $EXECUTABLE *.txt STD* *diagnostics.log datetime |
410 |
rm -rf mnc_test_* |
411 |
rm -f *_MIT_CE_000.opt0000 costfunction*0000 |
412 |
echo successful 1>&2 |
413 |
exit 0 |
414 |
) |
415 |
fi |
416 |
} |
417 |
|
418 |
makedependmodel() |
419 |
{ |
420 |
# makedependmodel directory |
421 |
if test "x$NODEPEND" = xt ; then |
422 |
echo "make depend skipped!" |
423 |
else |
424 |
( |
425 |
cd $1; |
426 |
printf 'make depend ... ' 1>&2 |
427 |
$MAKE depend >> make.log 2>&1 |
428 |
RETVAL=$? |
429 |
if test "x$RETVAL" != x0 ; then |
430 |
tail make.log |
431 |
echo "makedependmodel: make depend failed" 1>&2 |
432 |
cp make.log $CDIR"/make.log" |
433 |
return 1 |
434 |
else |
435 |
echo successful 1>&2 |
436 |
fi |
437 |
) |
438 |
fi |
439 |
} |
440 |
|
441 |
makemodel() |
442 |
{ |
443 |
# makemodel directory |
444 |
( |
445 |
cd $1; |
446 |
if test -r Makefile ; then |
447 |
printf 'make ... ' 1>&2 |
448 |
if test "x$ADM" = xt ; then |
449 |
$MAKE adall >> make.log 2>&1 |
450 |
elif test "x$OADM" = xt ; then |
451 |
$MAKE adAll >> make.log 2>&1 |
452 |
else |
453 |
if test "x$JOBS" = x ; then |
454 |
$MAKE >> make.log 2>&1 |
455 |
else |
456 |
$MAKE -j $JOBS >> make.log 2>&1 |
457 |
fi |
458 |
fi |
459 |
RETVAL=$? |
460 |
if test "x$RETVAL" != x0 ; then |
461 |
tail make.log |
462 |
echo failed 1>&2 |
463 |
cp make.log $CDIR"/make.log" |
464 |
return 1 |
465 |
else |
466 |
echo successful 1>&2 |
467 |
fi |
468 |
fi |
469 |
) |
470 |
} |
471 |
|
472 |
symlink_mpifiles() |
473 |
{ |
474 |
# Put special links so that MPI specific files are used |
475 |
# This MUST be invoked between makeclean and makelinks because |
476 |
# the Makefile will link to non-mpi files by default |
477 |
|
478 |
dir=$1 |
479 |
code_dir=$2 |
480 |
BUILD_DIR=$dir/$3 |
481 |
CODE_DIR=$dir/$code_dir |
482 |
|
483 |
# These are files that should replace their counter-part when using -mpi |
484 |
MPI_FILES=`(cd $CODE_DIR; find . -name "*_mpi" -print)` |
485 |
|
486 |
# Is this an MPI run? |
487 |
if test "x$MPI" = xt ; then |
488 |
# YES: We symbolically link these files to the build |
489 |
# dir so long as there is no real file in place |
490 |
for ii in $MPI_FILES ; do |
491 |
i=`echo $ii | sed 's:^\./::'` |
492 |
name=`echo $i | sed 's:_mpi::' ` |
493 |
cmp $CODE_DIR/$i $BUILD_DIR/$name > /dev/null 2>&1 |
494 |
RETVAL=$? |
495 |
if test "x$RETVAL" != x0 ; then |
496 |
if ! test -f $BUILD_DIR/$i ; then |
497 |
#echo Linking $name to $i |
498 |
(cd $BUILD_DIR; ln -sf ../$code_dir/$i $name) |
499 |
fi |
500 |
fi |
501 |
done |
502 |
else |
503 |
# NO: We undo any _mpi symbolically linked files |
504 |
for ii in $MPI_FILES ; do |
505 |
i=`echo $ii | sed 's:^\./::'` |
506 |
name=`echo $i | sed 's:_mpi::' ` |
507 |
if test -L $BUILD_DIR/$name ; then |
508 |
cmp $BUILD_DIR/$name "../$code_dir/$name"_mpi > /dev/null 2>&1 |
509 |
RETVAL=$? |
510 |
if test "x$RETVAL" = x0 ; then |
511 |
#echo Un-linking $name from $linktarg |
512 |
rm -f $BUILD_DIR/$name |
513 |
fi |
514 |
fi |
515 |
done |
516 |
fi |
517 |
|
518 |
} |
519 |
|
520 |
linkdata() |
521 |
{ |
522 |
# linkdata run_dir input_dir_1 input_dir_2 ... |
523 |
# |
524 |
# symbolically link data files to run directory |
525 |
if test -d $1 ; then |
526 |
( |
527 |
cd $1 ; shift |
528 |
if test -r "../"$1"/eedata.mth" ; then |
529 |
# found eedata.mth in 1rst input dir and it is readable |
530 |
if test "x$MULTI_THREAD" = "xt" ; then |
531 |
# multi-threaded test: remove symbolic link & link eedata.mth |
532 |
if test -h eedata ; then rm -f eedata ; fi |
533 |
if test ! -r eedata ; then |
534 |
ln -sf "../"$1"/eedata.mth" eedata ; |
535 |
printf 'eedata.mth ' 1>&2 |
536 |
fi |
537 |
else |
538 |
# not multi-threaded test: remove eedata symbolic link |
539 |
if test -h eedata ; then rm -f eedata ; fi |
540 |
fi |
541 |
fi |
542 |
prevDir='NONE' |
543 |
for ldir in $* ; do |
544 |
if test -d "../"$ldir -a $ldir != $prevDir ; then |
545 |
printf 'ldir='${ldir} 1>&2 |
546 |
files=`( cd "../"$ldir ; ls -1 | grep -v CVS )` |
547 |
for i in $files ; do |
548 |
if test ! -d "../"$ldir/$i ; then |
549 |
if test ! -r $i ; then |
550 |
printf ' '$i 1>&2 |
551 |
ln -sf "../"$ldir"/"$i $i |
552 |
fi |
553 |
fi |
554 |
done |
555 |
if test -x "../"$ldir"/"prepare_run ; then |
556 |
"../"$ldir"/"prepare_run |
557 |
fi |
558 |
printf ' ; ' 1>&2 |
559 |
fi |
560 |
prevDir=$ldir |
561 |
done |
562 |
) |
563 |
fi |
564 |
} |
565 |
|
566 |
runmodel() |
567 |
{ |
568 |
# runmodel directory |
569 |
# |
570 |
# runs "$COMMAND in "directory" |
571 |
# (where "$COMMAND" is relative to "directory") |
572 |
( |
573 |
cd $1 |
574 |
printf 'runmodel in %s ...' $1 1>&2 |
575 |
# make output.txt |
576 |
echo |
577 |
if test -L $EXECUTABLE -a -x "../"$builddir"/"$EXECUTABLE ; then |
578 |
diff -q $EXECUTABLE "../"$builddir"/"$EXECUTABLE > /dev/null 2>&1 |
579 |
outD=$? ; if test $outD != 0 ; then rm -f $EXECUTABLE ; fi |
580 |
fi |
581 |
if test ! -x $EXECUTABLE -a -x "../"$builddir"/"$EXECUTABLE ; then |
582 |
echo " link" $EXECUTABLE "from dir ../"$builddir > run.log_tmp |
583 |
ln -sf "../"$builddir"/"$EXECUTABLE . |
584 |
fi |
585 |
if test ! -x $EXECUTABLE ; then |
586 |
rm -f $RUNLOG ; touch $RUNLOG |
587 |
if test -f run.log_tmp ; then cat run.log_tmp >> $RUNLOG ; fi |
588 |
echo " no executable:" $EXECUTABLE >> $RUNLOG |
589 |
RETVAL=8 |
590 |
ENDVAL=-1 |
591 |
else |
592 |
if test ! -f $OUTPUTFILE -o $OUTPUTFILE -ot $EXECUTABLE ; then |
593 |
# output do not exist or is older than executable: |
594 |
rm -f $RUNLOG ; touch $RUNLOG |
595 |
if test -f run.log_tmp ; then cat run.log_tmp >> $RUNLOG ; fi |
596 |
( eval $COMMAND ) >> $RUNLOG 2>&1 |
597 |
RETVAL=$? |
598 |
else |
599 |
RETVAL=0 |
600 |
if test -f $RUNLOG ; then |
601 |
if test -f run.log_tmp ; then cat run.log_tmp >> $RUNLOG ; fi |
602 |
echo "---------->> $OUTPUTFILE is up to date " >> $RUNLOG 2>&1 |
603 |
else |
604 |
touch $RUNLOG |
605 |
if test -f run.log_tmp ; then cat run.log_tmp >> $RUNLOG ; fi |
606 |
echo "---------->> $OUTPUTFILE is up to date " >> $RUNLOG 2>&1 |
607 |
echo " no previous $RUNLOG: assume NORMAL END" >> $RUNLOG 2>&1 |
608 |
fi |
609 |
fi |
610 |
ENDVAL=`cat $RUNLOG | grep -v 'ABNORMAL END' | grep -c 'NORMAL END'` |
611 |
fi |
612 |
rm -f run.log_tmp |
613 |
#if test "x$RETVAL" = x0 ; then |
614 |
if [ $RETVAL -eq 0 -a $ENDVAL -gt 0 ] ; then |
615 |
tail $RUNLOG |
616 |
echo successful 1>&2 |
617 |
# === Reduce the size of the testing emails! |
618 |
#cp $OUTPUTFILE $CDIR"/"$OUTPUTFILE |
619 |
if test -s STDERR.0000 ; then cp STDERR.0000 $CDIR"/STDERR.0000" ; fi |
620 |
return 0 |
621 |
else |
622 |
tail $RUNLOG |
623 |
echo failed '(run:' $RETVAL ' end:' $ENDVAL ')' 1>&2 |
624 |
cp $RUNLOG $CDIR"/"$RUNLOG |
625 |
if test -s STDERR.0000 ; then cp STDERR.0000 $CDIR"/STDERR.0000" ; fi |
626 |
return 1 |
627 |
fi |
628 |
) |
629 |
} |
630 |
|
631 |
createcodelet() |
632 |
{ |
633 |
# create codelet for comparing model output |
634 |
|
635 |
printf "creating the comparison code (using CC=$CC)... " |
636 |
cat > tr_cmpnum.c <<EOF |
637 |
#include <stdio.h> |
638 |
#include <math.h> |
639 |
int main( int argc, char** argv ) { |
640 |
int linnum,cmplin,best,lncnt; |
641 |
double a,b,abave,relerr; |
642 |
best = -22; |
643 |
lncnt = 0; |
644 |
while( 1 & ( (lncnt+=1) < 999 ) ) { |
645 |
scanf("%d", &linnum); |
646 |
if (linnum == -1) break; |
647 |
scanf("%lf", &a); scanf("%lf", &b); |
648 |
abave = 0.5*(fabs(a)+fabs(b)); |
649 |
if ( abave == abave ) { |
650 |
if (abave > 0.0) { |
651 |
relerr=fabs(a-b)/abave; |
652 |
if (relerr > 0.0) { cmplin = (int)rint(log10(relerr)); } |
653 |
else { cmplin = -16 ; } |
654 |
best = (best > cmplin) ? best : cmplin; } |
655 |
else { cmplin = -22 ; } |
656 |
/* printf("%d ; %lf ; %lf\n",cmplin,a,b); */ |
657 |
} |
658 |
else { |
659 |
/* printf("%lf ; %lf ; %lf\n",abave,a,b); */ |
660 |
break; } |
661 |
} |
662 |
if (lncnt == 999) best=-29; |
663 |
if (linnum != -1) best=-99; |
664 |
printf("%d\n", -best); |
665 |
return 0; |
666 |
} |
667 |
EOF |
668 |
$CC -o tr_cmpnum tr_cmpnum.c -lm |
669 |
|
670 |
if [ -x ./tr_cmpnum ]; then |
671 |
echo "OK" |
672 |
return 0 |
673 |
else |
674 |
echo |
675 |
echo "ERROR: failed to compile comparison code -- please specify" |
676 |
echo " a C compiler using the CC environment variable." |
677 |
exit 1 |
678 |
fi |
679 |
} |
680 |
|
681 |
formatresults() |
682 |
{ |
683 |
# formatresults expt genmake depend make run results* |
684 |
|
685 |
nm=$1 |
686 |
printf '%s %s %s %s' $2 $3 $4 $5 |
687 |
shift; shift; shift; shift; shift; |
688 |
listPrt=$@ |
689 |
listRes=`echo $listPrt | sed 's/>//' | sed 's/<//'` |
690 |
xx=`echo $listPrt | sed 's/.*>//' | sed 's/<.*//' | awk '{print $1}'` |
691 |
printf '%3s' $listPrt |
692 |
# line below does not work on hp-ux_ia64 : do those substitutions later on |
693 |
# printf '%3s' $listPrt | sed 's/ 99/ --/g' | sed 's/ > />/' | sed 's/ < /</' |
694 |
|
695 |
if [ $xx = '..' ]; then |
696 |
printf ' N/O ' |
697 |
elif [ $xx = '--' ]; then |
698 |
printf ' N/O ' |
699 |
elif [ $xx = 99 ]; then |
700 |
printf ' N/O ' |
701 |
else |
702 |
if [ $xx -ge $MATCH_CRIT ]; then |
703 |
printf ' pass' |
704 |
else |
705 |
printf ' FAIL' |
706 |
fi |
707 |
fi |
708 |
printf ' %s' $nm |
709 |
printf '\n' |
710 |
|
711 |
} |
712 |
|
713 |
scandirs() |
714 |
{ |
715 |
if [ $# -eq 1 ]; then |
716 |
for arg in * ; do |
717 |
test -f $arg/$1 && echo $arg |
718 |
done |
719 |
else |
720 |
echo $* |
721 |
fi |
722 |
} |
723 |
|
724 |
|
725 |
############################################################################### |
726 |
|
727 |
|
728 |
# Default properties |
729 |
debug=0 |
730 |
verbose=1 |
731 |
clean=0 |
732 |
|
733 |
IEEE=true |
734 |
if test "x$MITGCM_IEEE" != x ; then |
735 |
IEEE=$MITGCM_IEEE |
736 |
fi |
737 |
GSL=f |
738 |
|
739 |
CLEANUP=f |
740 |
QUICK=f |
741 |
NOGENMAKE=f |
742 |
NOCLEAN=f |
743 |
NODEPEND=f |
744 |
POSTCLEAN=f |
745 |
|
746 |
BASH= |
747 |
OPTFILE=NONE |
748 |
ADDRESSES= |
749 |
TESTDIRS= |
750 |
SKIPDIRS= |
751 |
MPACKDIR="../tools/mpack-1.6" |
752 |
HAVE_MPACK= |
753 |
MPACK= |
754 |
COMMAND= |
755 |
if test "x$MAKE" = x ; then |
756 |
MAKE=make |
757 |
fi |
758 |
if test "x$CC" = x ; then |
759 |
CC=cc |
760 |
fi |
761 |
JOBS= |
762 |
MPI=f |
763 |
MULTI_THREAD=f |
764 |
OUTDIR= |
765 |
DELDIR= |
766 |
|
767 |
ADM= |
768 |
OADM= |
769 |
|
770 |
# list of pTracers to check for monitor output |
771 |
PTRACERS_NUM="1 2 3 4 5" |
772 |
|
773 |
MATCH_CRIT=13 |
774 |
|
775 |
printf "parsing options... " |
776 |
|
777 |
ac_prev= |
778 |
for ac_option ; do |
779 |
|
780 |
# If the previous option needs an argument, assign it. |
781 |
if test -n "$ac_prev"; then |
782 |
eval "$ac_prev=\$ac_option" |
783 |
ac_prev= |
784 |
continue |
785 |
fi |
786 |
|
787 |
ac_optarg=`expr "x$ac_option" : 'x[^=]*=\(.*\)'` |
788 |
|
789 |
case $ac_option in |
790 |
|
791 |
-help | --help | -h | --h) |
792 |
usage ;; |
793 |
|
794 |
-optfile | --optfile | -of | --of) |
795 |
ac_prev=OPTFILE ;; |
796 |
-optfile=* | --optfile=* | -of=* | --of=*) |
797 |
OPTFILE=$ac_optarg ;; |
798 |
|
799 |
-addr | --addr | -a | --a) |
800 |
ac_prev=ADDRESSES ;; |
801 |
-addr=* | --addr=*) |
802 |
ADDRESSES=$ac_optarg ;; |
803 |
-mpackdir | --mpackdir | -mpd | --mpd) |
804 |
ac_prev=MPACKDIR ;; |
805 |
-mpackdir=* | --mpackdir=* | -mpd=* | --mpd=*) |
806 |
MPACKDIR=$ac_optarg ;; |
807 |
|
808 |
-tdir | --tdir | -t | --t) |
809 |
ac_prev=TESTDIRS ;; |
810 |
-tdir=* | --tdir=*) |
811 |
TESTDIRS=$ac_optarg ;; |
812 |
|
813 |
-skipdir | --skipdir | -skd | --skd) |
814 |
ac_prev=SKIPDIRS ;; |
815 |
-skipdir=* | --skipdir=*) |
816 |
SKIPDIRS=$ac_optarg ;; |
817 |
|
818 |
-bash | --bash | -b | --b) |
819 |
ac_prev=BASH ;; |
820 |
-bash=* | --bash=*) |
821 |
BASH=$ac_optarg ;; |
822 |
|
823 |
-command | --command | -c | --c) |
824 |
ac_prev=COMMAND ;; |
825 |
-command=* | --command=*) |
826 |
COMMAND=$ac_optarg ;; |
827 |
|
828 |
-make | --make | -m | --m) |
829 |
ac_prev=MAKE ;; |
830 |
-make=* | --make=*) |
831 |
MAKE=$ac_optarg ;; |
832 |
|
833 |
-odir | --odir) |
834 |
ac_prev=OUTDIR ;; |
835 |
-odir=* | --odir=*) |
836 |
OUTDIR=$ac_optarg ;; |
837 |
|
838 |
-ptracers | --ptracers | -ptr | --ptr) |
839 |
ac_prev=PTRACERS_NUM ;; |
840 |
-ptracers=* | --ptracers=* | -ptr=* | --ptr=*) |
841 |
PTRACERS_NUM=$ac_optarg ;; |
842 |
|
843 |
-match | --match ) ac_prev=MATCH_CRIT ;; |
844 |
-match=* | --match=* ) MATCH_CRIT=$ac_optarg ;; |
845 |
|
846 |
-j) ac_prev=JOBS ;; |
847 |
-j=*) JOBS=$ac_optarg ;; |
848 |
|
849 |
-clean | --clean) |
850 |
CLEANUP=t ; DELDIR=t ;; |
851 |
|
852 |
-quick | --quick | -q | --q) |
853 |
QUICK=t ;; |
854 |
-nogenmake | --nogenmake | -ng | --ng) |
855 |
NOGENMAKE=t ;; |
856 |
-noclean | --noclean | -nc | --nc) |
857 |
NOCLEAN=t ;; |
858 |
-nodepend | --nodepend | -nd | --nd) |
859 |
NODEPEND=t ;; |
860 |
|
861 |
-postclean | --postclean | -pc | --pc) |
862 |
POSTCLEAN=t ;; |
863 |
|
864 |
-mpi) MPI=t ;; |
865 |
|
866 |
-mth) MULTI_THREAD=t ;; |
867 |
|
868 |
-adm | -ad) ADM=t ;; |
869 |
|
870 |
-oad) OADM=t; NODEPEND=t ;; |
871 |
|
872 |
-ieee) IEEE=true ;; |
873 |
-noieee) IEEE= ;; |
874 |
-gsl) GSL=t ;; |
875 |
|
876 |
-verbose) verbose=2 ;; |
877 |
-debug) debug=1 ;; |
878 |
-quiet) verbose=0 ;; |
879 |
|
880 |
-deldir | -dd) DELDIR=t ;; |
881 |
|
882 |
-ts) TS=t;; |
883 |
|
884 |
-papis) PAPIS=t;; |
885 |
|
886 |
-pcls) PCL=t;; |
887 |
|
888 |
-*) |
889 |
echo "Error: unrecognized option: "$ac_option |
890 |
usage |
891 |
;; |
892 |
|
893 |
*) |
894 |
echo "Error: unrecognized argument: "$ac_option |
895 |
usage |
896 |
;; |
897 |
|
898 |
esac |
899 |
|
900 |
done |
901 |
|
902 |
if test "x$QUICK" = xt ; then |
903 |
NOGENMAKE=t |
904 |
NOCLEAN=t |
905 |
NODEPEND=t |
906 |
fi |
907 |
|
908 |
#- setting for forward or ADM testing |
909 |
if test "x$ADM" = xt ; then |
910 |
code_dir=code_ad |
911 |
inputdir=input_ad |
912 |
ref_outp="output_adm.txt" |
913 |
EXECUTABLE="mitgcmuv_ad" |
914 |
elif test "x$OADM" = xt ; then |
915 |
code_dir=code_oad |
916 |
inputdir=input_oad |
917 |
ref_outp="output_oadm.txt" |
918 |
EXECUTABLE="mitgcmuv_ad" |
919 |
else |
920 |
code_dir=code |
921 |
inputdir=input |
922 |
ref_outp="output.txt" |
923 |
EXECUTABLE="mitgcmuv" |
924 |
fi |
925 |
|
926 |
if test "x$TESTDIRS" = x ; then |
927 |
LIST=`scandirs results/$ref_outp` |
928 |
else |
929 |
#- expand group of experiments: |
930 |
LIST=" " |
931 |
for xx in $TESTDIRS |
932 |
do |
933 |
case $xx in |
934 |
'basic') LIST=${LIST}" aim.5l_cs hs94.128x64x5 ideal_2D_oce" |
935 |
LIST=${LIST}" lab_sea tutorial_baroclinic_gyre" |
936 |
LIST=${LIST}" tutorial_global_oce_latlon tutorial_plume_on_slope" |
937 |
;; |
938 |
'tutorials') |
939 |
LIST=${LIST}" "`ls | grep 'tutorial_'` ;; |
940 |
*) LIST=${LIST}" "$xx ;; |
941 |
esac |
942 |
done |
943 |
fi |
944 |
#echo 'LIST='${LIST}'<' |
945 |
#- skip dirs, remove duplicate and non-directory: |
946 |
TESTDIRS=" " |
947 |
count=0 |
948 |
for xx in $LIST |
949 |
do |
950 |
yy=`echo $SKIPDIRS | grep -c $xx` |
951 |
if test $yy = 0 ; then |
952 |
if test -d $xx ; then |
953 |
yy=`echo $TESTDIRS | grep -c $xx` |
954 |
if test $yy = 0 ; then TESTDIRS=${TESTDIRS}" "$xx ; fi |
955 |
else count=1 ; |
956 |
echo ""; echo -n " -- skip \"$xx\" (not a directory !)" |
957 |
fi |
958 |
else |
959 |
if test $count = 1 ; then echo -n ", \"$xx\"" |
960 |
else count=1 ; echo "" ; echo -n " skip: \"$xx\"" |
961 |
fi |
962 |
fi |
963 |
done |
964 |
if test $count = 1 ; then echo "" ; echo -n " ... " ; fi |
965 |
#echo 'TESTDIRS='${TESTDIRS}'<' |
966 |
|
967 |
if test "x$OPTFILE" = xNONE -a "x$MITGCM_OF" != x ; then |
968 |
OPTFILE=$MITGCM_OF |
969 |
fi |
970 |
|
971 |
RUNLOG="run.log" |
972 |
OUTPUTFILE=$ref_outp |
973 |
if test "x$COMMAND" = x ; then |
974 |
COMMAND="./$EXECUTABLE > $OUTPUTFILE" |
975 |
fi |
976 |
if test "x$MPI" = xt ; then |
977 |
OUTPUTFILE="STDOUT.0000" |
978 |
fi |
979 |
|
980 |
echo "OK (COMMAND= $COMMAND )" |
981 |
|
982 |
# set the Default List of output variables to be checked: |
983 |
# (use default or load experiment-specific list from file "tr_checklist") |
984 |
# content : 1rst = main variable used to decide if it pass or FAIL |
985 |
# others = number of matching digits to be printed in summary.txt |
986 |
if test "x$ADM" = x -a "x$OADM" = x; then |
987 |
DEF_CHECK_LIST='PS PS T+ S+ U+ V+ pt1+ pt2+ pt3+ pt4+ pt5+' |
988 |
EMPTY_RESULTS='.. .. .. .. .. .. .. .. .. .. .. .. .. .. .. .. ..' |
989 |
LEN_CHECK_LIST=`echo $DEF_CHECK_LIST | sed 's/ [a-zA-Z0-9]*+/&mn &mx &av &sd/g' | awk '{print NF-1}'` |
990 |
ii=`echo $EMPTY_RESULTS | awk '{print NF}'` |
991 |
EMPTY_RESULTS=$EMPTY_RESULTS`expr $LEN_CHECK_LIST - $ii | awk 'BEGIN{FS=":"}{for(i=1;i<=$1;i++){printf " ."}}'` |
992 |
else |
993 |
DEF_CHECK_LIST='Grad Cost Grad' |
994 |
EMPTY_RESULTS='.. ..' |
995 |
LEN_CHECK_LIST=`echo $DEF_CHECK_LIST | sed 's/ [a-zA-Z0-9]*+/&mn &mx &av &sd/g' | awk '{print NF-1}'` |
996 |
fi |
997 |
|
998 |
# create the FORTRAN comparison code |
999 |
createcodelet |
1000 |
|
1001 |
# build the mpack utility (if ADDRESSES = NONE, do it to test the build) |
1002 |
if test "x$ADDRESSES" = x ; then |
1003 |
echo "skipping mpack build" |
1004 |
else |
1005 |
build_mpack |
1006 |
fi |
1007 |
|
1008 |
# Create a uniquely named directory to store results |
1009 |
CMDLINE=$0 |
1010 |
for xx in "$@" ; do nw=`echo $xx | wc -w` |
1011 |
if test $nw = '1' ; then CMDLINE="$CMDLINE $xx" |
1012 |
else CMDLINE="$CMDLINE '$xx'" ; fi |
1013 |
done |
1014 |
#for xx in "$@" ; do CMDLINE="$CMDLINE '$xx'" ; done |
1015 |
MACH=`hostname` |
1016 |
UNAMEA=`uname -a` |
1017 |
DATE=`date +%Y%m%d` |
1018 |
BASE="tr_"$MACH"_"$DATE"_" |
1019 |
if test "x$OUTDIR" != x ; then |
1020 |
BASE="tr_"$OUTDIR"_"$DATE"_" |
1021 |
else |
1022 |
short_name=`hostname | sed 's/\..*$//'` |
1023 |
BASE="tr_"$short_name"_"$DATE"_" |
1024 |
fi |
1025 |
DNUM=0 |
1026 |
DRESULTS="$BASE$DNUM" |
1027 |
while test -e $DRESULTS ; do |
1028 |
DNUM=$(( $DNUM + 1 )) |
1029 |
DRESULTS="$BASE$DNUM" |
1030 |
done |
1031 |
mkdir $DRESULTS |
1032 |
RETVAL=$? |
1033 |
if test "x$RETVAL" != x0 ; then |
1034 |
echo "ERROR: Can't create results directory \"./$DRESULTS\"" |
1035 |
exit 1 |
1036 |
fi |
1037 |
SUMMARY="$DRESULTS/summary.txt" |
1038 |
start_date=`date` |
1039 |
echo $start_date > $SUMMARY |
1040 |
echo 'run:' $CMDLINE >> $SUMMARY |
1041 |
echo 'on :' $UNAMEA >> $SUMMARY |
1042 |
|
1043 |
of_path= |
1044 |
if test "x$OPTFILE" != xNONE ; then |
1045 |
if test -r $OPTFILE ; then |
1046 |
# get the path |
1047 |
path=${OPTFILE%/*} |
1048 |
if test "x$path" = x ; then |
1049 |
of_path=`pwd` |
1050 |
else |
1051 |
of_path=`( cd $path > /dev/null 2>&1 ; pwd )` |
1052 |
fi |
1053 |
file=${OPTFILE##*/} |
1054 |
OPTFILE=$of_path/$file |
1055 |
cp $OPTFILE $DRESULTS |
1056 |
echo >> $SUMMARY |
1057 |
echo " OPTFILE=$OPTFILE" >> $SUMMARY |
1058 |
else |
1059 |
echo | tee $SUMMARY |
1060 |
echo "ERROR: can't read OPTFILE=\"$OPTFILE\"" | tee $SUMMARY |
1061 |
exit 1 |
1062 |
fi |
1063 |
else |
1064 |
echo >> $SUMMARY |
1065 |
echo "No \"OPTFILE\" was explicitly specified by testreport," >> $SUMMARY |
1066 |
echo " so the genmake default will be used." >> $SUMMARY |
1067 |
fi |
1068 |
echo |
1069 |
echo >> $SUMMARY |
1070 |
if test "x$ADM" = x -a "x$OADM" = x; then |
1071 |
if [ $MATCH_CRIT -lt 10 ] ; |
1072 |
then line_0="default "$MATCH_CRIT ; |
1073 |
else line_0="default "$MATCH_CRIT ; fi |
1074 |
line_0="$line_0 ----T----- ----S----- ----U----- ----V-----" |
1075 |
# line_0=" ----T----- ----S----- ----U----- ----V-----" |
1076 |
line_1="G D M c m s m s m s m s" |
1077 |
line_2="E p a R g m m e . m m e . m m e . m m e ." |
1078 |
line_3="N n k u 2 i a a d i a a d i a a d i a a d" |
1079 |
line_4="2 d e n d n x n . n x n . n x n . n x n ." |
1080 |
for ii in $PTRACERS_NUM ; do |
1081 |
line_0="$line_0 --PTR 0"$ii"--" |
1082 |
line_1="$line_1 m s" |
1083 |
line_2="$line_2 m m e ." |
1084 |
line_3="$line_3 i a a d" |
1085 |
line_4="$line_4 n x n ." |
1086 |
done |
1087 |
echo "$line_0" | tee -a $SUMMARY |
1088 |
echo "$line_1" | tee -a $SUMMARY |
1089 |
echo "$line_2" | tee -a $SUMMARY |
1090 |
echo "$line_3" | tee -a $SUMMARY |
1091 |
echo "$line_4" | tee -a $SUMMARY |
1092 |
echo " " | tee -a $SUMMARY |
1093 |
else |
1094 |
echo "ADJOINT=true" >> $SUMMARY |
1095 |
echo >> $SUMMARY |
1096 |
if [ $MATCH_CRIT -lt 10 ] ; |
1097 |
then line_0="default "$MATCH_CRIT ; |
1098 |
else line_0="default "$MATCH_CRIT ; fi |
1099 |
echo "$line_0" | tee -a $SUMMARY |
1100 |
cat << EOF | tee -a $SUMMARY |
1101 |
G D M C G |
1102 |
E p a R o r |
1103 |
N n k u s a |
1104 |
2 d e n t d |
1105 |
|
1106 |
EOF |
1107 |
fi |
1108 |
|
1109 |
# ...and each test directory... |
1110 |
for dir in $TESTDIRS ; do |
1111 |
|
1112 |
# set builddir & rundir: |
1113 |
builddir="build" |
1114 |
if test ! -d $dir/$builddir ; then mkdir $dir/$builddir ; fi |
1115 |
rundir="run" |
1116 |
if test ! -d $dir/$rundir ; then |
1117 |
rundir=$builddir |
1118 |
fi |
1119 |
CODE_DIR=$dir/$code_dir |
1120 |
BUILD_DIR=$dir/$builddir |
1121 |
|
1122 |
# Cleanup only! |
1123 |
if test "x$CLEANUP" = xt ; then |
1124 |
if test -r $BUILD_DIR/Makefile ; then |
1125 |
echo ' ------ clean dir:' $dir/$builddir |
1126 |
( cd $BUILD_DIR ; make CLEAN ) |
1127 |
fi |
1128 |
if test -d $dir/$rundir/CVS ; then |
1129 |
echo ' ------ clean dir:' $dir/$rundir |
1130 |
run_clean $dir/$rundir |
1131 |
fi |
1132 |
( |
1133 |
cd $dir |
1134 |
rm -rf tr_run.* |
1135 |
) |
1136 |
continue |
1137 |
fi |
1138 |
|
1139 |
# Verify that the testdir exists and contains previous |
1140 |
# results in the correct location--or skip this directory! |
1141 |
fout=$dir"/results/"$ref_outp |
1142 |
if test ! -r $fout ; then |
1143 |
echo "can't read \"$fout\" -- skipping $dir" |
1144 |
continue |
1145 |
fi |
1146 |
|
1147 |
# Check for specific files for particular type of run |
1148 |
|
1149 |
if test ! -r $CODE_DIR"/SIZE.h_mpi" -a "x$MPI" = "xt" ; then |
1150 |
echo "can't find \"$CODE_DIR/SIZE.h_mpi\" -- skipping $dir" |
1151 |
continue |
1152 |
fi |
1153 |
if test ! -r $dir"/input/eedata.mth" -a "x$MULTI_THREAD" = "xt" ; then |
1154 |
echo "can't find \"$dir/input/eedata.mth\" -- skipping $dir" |
1155 |
continue |
1156 |
fi |
1157 |
|
1158 |
# Check whether there are "extra runs" for this testdir |
1159 |
extra_runs= |
1160 |
ex_run_dirs=`( cd $dir ; echo $inputdir.* )` |
1161 |
#echo "ex_run_dirs='$ex_run_dirs'" |
1162 |
for exd in $ex_run_dirs ; do |
1163 |
name=`echo $exd | sed -e "s/$inputdir\.//"` |
1164 |
refExOut=`echo $ref_outp | sed "s/\./.${name}./"` |
1165 |
outf="$dir/results/$refExOut" |
1166 |
if test -f $outf -a -r $outf ; then |
1167 |
if test "x$MULTI_THREAD" = "xt" ; then |
1168 |
if test -r $dir"/"$exd"/eedata.mth" ; then |
1169 |
extra_runs="$extra_runs $name" |
1170 |
#else echo $dir"/"$exd"/eedata.mth: not found" |
1171 |
fi |
1172 |
else |
1173 |
extra_runs="$extra_runs $name" |
1174 |
fi |
1175 |
fi |
1176 |
done |
1177 |
|
1178 |
echo "-------------------------------------------------------------------------------" |
1179 |
echo |
1180 |
if test "x$extra_runs" = "x" ; then |
1181 |
echo "Experiment: $dir" |
1182 |
else |
1183 |
echo "Experiment: $dir ; extra_runs=$extra_runs" |
1184 |
fi |
1185 |
echo |
1186 |
unset genmake makedepend make run |
1187 |
results=$EMPTY_RESULTS |
1188 |
|
1189 |
# Create an output dir for each OPTFILE/tdir combination |
1190 |
rel_CDIR=$DRESULTS"/"$dir |
1191 |
mkdir $rel_CDIR |
1192 |
CDIR=`pwd`"/$rel_CDIR" |
1193 |
|
1194 |
if test "x$CLEANUP" = xt ; then |
1195 |
echo '====>>> this is to check that we never go through this part <<< ===' |
1196 |
makeclean $dir/$builddir \ |
1197 |
&& run_clean $dir/$rundir |
1198 |
else |
1199 |
genmakemodel $dir/$builddir && genmake=Y \ |
1200 |
&& makeclean $dir/$builddir \ |
1201 |
&& run_clean $dir/$rundir \ |
1202 |
&& symlink_mpifiles $dir $code_dir $builddir \ |
1203 |
&& makedependmodel $dir/$builddir && makedepend=Y \ |
1204 |
&& makemodel $dir/$builddir && make=Y \ |
1205 |
&& linkdata $dir/$rundir $inputdir input \ |
1206 |
&& runmodel $dir/$rundir && run=Y \ |
1207 |
&& results=`testoutput_run $dir $rundir $ref_outp` |
1208 |
fi |
1209 |
|
1210 |
echo |
1211 |
fres=`formatresults $dir ${genmake:-N} ${makedepend:-N} ${make:-N} ${run:-N} $results` |
1212 |
echo |
1213 |
echo "$fres" | sed 's/ 99/ --/g' | sed 's/ > />/' | sed 's/ < /</' >> $SUMMARY |
1214 |
touch $CDIR"/summary.txt" |
1215 |
echo "fresults='$fres'" | sed 's/ 99/ --/g' >> $CDIR"/summary.txt" |
1216 |
echo "MACH='$MACH'" >> $CDIR"/summary.txt" |
1217 |
echo "UNAMEA='$UNAMEA'" >> $CDIR"/summary.txt" |
1218 |
echo "DATE='$DATE'" >> $CDIR"/summary.txt" |
1219 |
echo "tdir='$dir'" >> $CDIR"/summary.txt" |
1220 |
if test "x$ADM" = xt ; then |
1221 |
head -1 $dir/$builddir/taf_ad.log >> $CDIR"/summary.txt" |
1222 |
grep -A3 'Seconds in section "ALL' $dir/$rundir/$OUTPUTFILE \ |
1223 |
>> $CDIR"/summary.txt" |
1224 |
fi |
1225 |
|
1226 |
for ex in $extra_runs ; do |
1227 |
unset run |
1228 |
results=$EMPTY_RESULTS |
1229 |
# reference output file |
1230 |
refExOut=`echo $ref_outp | sed "s/\./.${ex}./g"` |
1231 |
# Create an output dir for each OPTFILE/tdir.ex combination |
1232 |
rel_CDIR=$DRESULTS"/"$dir"."$ex |
1233 |
mkdir $rel_CDIR |
1234 |
CDIR=`pwd`"/$rel_CDIR" |
1235 |
test ! -e "$dir/tr_run.$ex" && mkdir "$dir/tr_run.$ex" |
1236 |
run_clean $dir/tr_run.$ex |
1237 |
linkdata $dir/tr_run.$ex $inputdir.$ex $inputdir input |
1238 |
runmodel $dir/tr_run.$ex && run=Y \ |
1239 |
&& results=`testoutput_run $dir tr_run.$ex $refExOut` |
1240 |
fres=`formatresults $dir ${genmake:-N} ${makedepend:-N} ${make:-N} ${run:-N} $results` |
1241 |
fres="$fres.$ex" |
1242 |
echo |
1243 |
echo "$fres" | sed 's/ 99/ --/g' | sed 's/ > />/' | sed 's/ < /</' >> $SUMMARY |
1244 |
touch $CDIR"/summary.txt" |
1245 |
echo "fresults='$fres'" | sed 's/ 99/ --/g' >> $CDIR"/summary.txt" |
1246 |
echo "MACH='$MACH'" >> $CDIR"/summary.txt" |
1247 |
echo "UNAMEA='$UNAMEA'" >> $CDIR"/summary.txt" |
1248 |
echo "DATE='$DATE'" >> $CDIR"/summary.txt" |
1249 |
echo "tdir='$dir.$ex'" >> $CDIR"/summary.txt" |
1250 |
if test "x$ADM" = xt ; then |
1251 |
head -1 $dir/$builddir/taf_ad.log >> $CDIR"/summary.txt" |
1252 |
grep -A3 'Seconds in section "ALL' $dir/tr_run.$ex/$OUTPUTFILE \ |
1253 |
>> $CDIR"/summary.txt" |
1254 |
fi |
1255 |
if test "x$POSTCLEAN" = xt ; then |
1256 |
run_clean $dir/tr_run.$ex |
1257 |
fi |
1258 |
done |
1259 |
|
1260 |
#postclean $dir/$builddir |
1261 |
if test "x$POSTCLEAN" = xt ; then |
1262 |
makeclean $dir/$builddir \ |
1263 |
&& run_clean $dir/$rundir |
1264 |
fi |
1265 |
|
1266 |
echo "-------------------------------------------------------------------------------" |
1267 |
|
1268 |
done |
1269 |
|
1270 |
printf "Start time: " >> $SUMMARY |
1271 |
echo "$start_date" >> $SUMMARY |
1272 |
printf "End time: " >> $SUMMARY |
1273 |
date >> $SUMMARY |
1274 |
|
1275 |
# If addresses were supplied and mpack built successfully, then try |
1276 |
# to send email using mpack. |
1277 |
if test "x$ADDRESSES" = xNONE -o "x$ADDRESSES" = x ; then |
1278 |
echo "No results email was sent." |
1279 |
else |
1280 |
if test "x$HAVE_MPACK" = xt ; then |
1281 |
tar -cf $DRESULTS".tar" $DRESULTS > /dev/null 2>&1 \ |
1282 |
&& gzip $DRESULTS".tar" \ |
1283 |
&& $MPACK -s MITgcm-test -m 3555000 $DRESULTS".tar.gz" $ADDRESSES |
1284 |
RETVAL=$? |
1285 |
if test "x$RETVAL" != x0 ; then |
1286 |
echo |
1287 |
echo "Warning: The tar, gzip, & mpack step failed. Please send email" |
1288 |
echo " to <MITgcm-support@mitgcm.org> for help. You may copy the " |
1289 |
echo " summary of results from the directory \"$DRESULTS\"." |
1290 |
echo |
1291 |
else |
1292 |
echo |
1293 |
echo "An email containing results was sent to the following addresses:" |
1294 |
echo " \"$ADDRESSES\"" |
1295 |
echo |
1296 |
fi |
1297 |
test -f $DRESULTS".tar" && rm -f $DRESULTS".tar" |
1298 |
test -f $DRESULTS".tar.gz" && rm -f $DRESULTS".tar.gz" |
1299 |
fi |
1300 |
fi |
1301 |
|
1302 |
rm -f tr_cmpnum.c tr_cmpnum |
1303 |
|
1304 |
if test "x$CLEANUP" != xt ; then |
1305 |
cat $SUMMARY | sed 's/ \. \. \. \. \. \. \. \. \. \. \. \. //' |
1306 |
if test -e tr_out.txt ; then |
1307 |
mv tr_out.txt tr_out.txt.old |
1308 |
fi |
1309 |
cat $SUMMARY | sed '/^[YN] [YN] [YN] [YN]/ s/ \. //g' > tr_out.txt |
1310 |
fi |
1311 |
|
1312 |
if test "x$DELDIR" = xt ; then |
1313 |
rm -rf $DRESULTS |
1314 |
fi |