1 |
edhill |
1.19 |
#! /usr/bin/env bash |
2 |
edhill |
1.1 |
# |
3 |
jmc |
1.85 |
# $Header: /u/gcmpack/MITgcm/verification/testreport,v 1.84 2006/07/07 21:47:35 jmc Exp $ |
4 |
edhill |
1.12 |
# $Name: $ |
5 |
edhill |
1.1 |
# |
6 |
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|
7 |
|
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usage() |
8 |
|
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{ |
9 |
|
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echo |
10 |
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echo "Usage: $0 [OPTIONS]" |
11 |
|
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echo |
12 |
|
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echo "where possible OPTIONS are:" |
13 |
|
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echo " (-help|-h) print usage" |
14 |
jmc |
1.83 |
echo " (-mth) run multi threaded (using eedata.mth)" |
15 |
|
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echo " (-mpi) compile and run using MPI" |
16 |
edhill |
1.10 |
echo " (-ieee|-noieee) if possible, use IEEE compiler flags" |
17 |
edhill |
1.41 |
echo " (DEF=\"-ieee\")" |
18 |
edhill |
1.6 |
echo " (-optfile=|-of=)STRING list of optfiles to use" |
19 |
edhill |
1.20 |
echo " (-a|-addr) STRING list of email recipients" |
20 |
edhill |
1.6 |
echo " (DEF=\"edhill@mitgcm.org\")" |
21 |
jmc |
1.84 |
echo " (-t|-tdir) STRING list of group and/or exp. dirs to test" |
22 |
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echo " (recognized groups: basic, tutorials)" |
23 |
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echo " (DEF=\"\" which test all)" |
24 |
edhill |
1.20 |
echo " (-b|-bash) STRING preferred location of a \"bash\" or" |
25 |
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echo " Bourne-compatible \"sh\" shell" |
26 |
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echo " (DEF=\"\" for \"bash\")" |
27 |
edhill |
1.24 |
echo " (-adm|-ad) perform an adjoint run" |
28 |
edhill |
1.20 |
echo " (-command) STRING command to run" |
29 |
edhill |
1.6 |
echo " (DEF=\"make output.txt\")" |
30 |
edhill |
1.20 |
echo " (-m|-make) STRING command to use for \"make\"" |
31 |
edhill |
1.8 |
echo " (DEF=\"make\")" |
32 |
jmc |
1.70 |
echo " (-odir) STRING used to build output directory name" |
33 |
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echo " (DEF=\"hostname\")" |
34 |
edhill |
1.50 |
echo " (-ptracers|-ptr) STRING specify which ptracers to test" |
35 |
|
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echo " (DEF=\"1 2 3 4 5\")" |
36 |
edhill |
1.43 |
echo " (-j) JOBS use \"make -j JOBS\" for parallel builds" |
37 |
edhill |
1.10 |
echo " (-clean) *ONLY* run \"make CLEAN\"" |
38 |
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echo " (-quick|-q) same as \"-nogenmake -noclean -nodepend\"" |
39 |
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echo " (-nogenmake|-ng) skip the genmake stage" |
40 |
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echo " (-noclean|-nc) skip the \"make clean\" stage" |
41 |
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echo " (-nodepend|-nd) skip the \"make depend\" stage" |
42 |
edhill |
1.40 |
echo " (-deldir|-dd) on success, delete the output directory" |
43 |
edhill |
1.6 |
echo |
44 |
edhill |
1.50 |
echo "and where STRING can be a whitespace-delimited list" |
45 |
edhill |
1.6 |
echo "such as:" |
46 |
edhill |
1.50 |
echo |
47 |
edhill |
1.6 |
echo " -t 'exp0 exp2 exp3' " |
48 |
|
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echo " -addr='abc@123.com testing@home.org'" |
49 |
edhill |
1.1 |
echo |
50 |
edhill |
1.50 |
echo "provided that the expression is properly quoted within the current" |
51 |
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echo "shell (note the use of single quotes to protect white space)." |
52 |
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echo |
53 |
edhill |
1.1 |
exit 1 |
54 |
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} |
55 |
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56 |
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# build the mpack utility |
57 |
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build_mpack() |
58 |
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{ |
59 |
edhill |
1.34 |
printf "building the mpack utility... " |
60 |
edhill |
1.1 |
if test ! -x "$MPACKDIR/mpack" ; then |
61 |
|
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if test ! -d $MPACKDIR ; then |
62 |
edhill |
1.20 |
echo |
63 |
edhill |
1.1 |
echo "Error: can't find \"$MPACKDIR\"" |
64 |
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echo " are you sure this program is being run in the correct " |
65 |
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echo " (that is, \"MITGCM_ROOT\verification\") directory?" |
66 |
edhill |
1.20 |
echo |
67 |
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HAVE_MPACK=f |
68 |
edhill |
1.1 |
fi |
69 |
edhill |
1.34 |
printf "building mpack... " |
70 |
edhill |
1.26 |
if test "x$CC" = x ; then |
71 |
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export CC=cc |
72 |
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fi |
73 |
edhill |
1.25 |
( cd $MPACKDIR && ./configure && $MAKE ) > tr_build_mpack.out 2>&1 |
74 |
edhill |
1.1 |
RETVAL=$? |
75 |
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if test "x$RETVAL" != x0 ; then |
76 |
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echo |
77 |
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echo "Error building the mpack tools at: $MPACK_DIR" |
78 |
edhill |
1.20 |
echo |
79 |
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HAVE_MPACK=f |
80 |
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else |
81 |
edhill |
1.25 |
rm -f tr_build_mpack.out |
82 |
edhill |
1.20 |
HAVE_MPACK=t |
83 |
edhill |
1.1 |
fi |
84 |
edhill |
1.20 |
else |
85 |
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HAVE_MPACK=t |
86 |
edhill |
1.1 |
fi |
87 |
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echo "OK" |
88 |
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} |
89 |
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90 |
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testoutput_for_prop() |
91 |
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{ |
92 |
edhill |
1.34 |
# testoutput_for_prop dir s1 label subdir extension |
93 |
edhill |
1.1 |
# |
94 |
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# compares files in $dir/$subdir/output.txt and $dir/results/output.txt |
95 |
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# using search strings s1 and text label |
96 |
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97 |
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if [ $debug -gt 0 ]; then |
98 |
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echo testoutput_for_prop: grep "$2" $1/$4/output.txt 1>&2 |
99 |
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fi |
100 |
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if [ -r $1/$4/output.txt ]; then |
101 |
edhill |
1.15 |
grep "$2" $1/$4/output.txt | sed 's/.*=//' | cat -n > tmp1.txt |
102 |
jmc |
1.67 |
lncntA=`wc -l tmp1.txt | awk '{print $1}' ` |
103 |
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if [ $lncntA -lt 3 ]; then |
104 |
edhill |
1.1 |
if [ $verbose -gt 0 ]; then |
105 |
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echo Not enough lines of output when searching for "$2" 1>&2 |
106 |
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fi |
107 |
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return 99 |
108 |
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fi |
109 |
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else |
110 |
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echo testoutput_for_prop: output.txt from model run was not readable 1>&2 |
111 |
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return 99 |
112 |
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fi |
113 |
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if [ $debug -gt 0 ]; then |
114 |
jmc |
1.85 |
echo testoutput_for_prop: grep "$2" $1/results/output.$5 1>&2 |
115 |
edhill |
1.1 |
fi |
116 |
jmc |
1.85 |
grep "$2" $1/results/output.$5 | sed 's/.*=//' | cat -n > tmp2.txt |
117 |
jmc |
1.67 |
lncntB=`wc -l tmp2.txt | awk '{print $1}' ` |
118 |
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if [ $lncntB -lt 3 ]; then |
119 |
edhill |
1.1 |
if [ $verbose -gt 0 ]; then |
120 |
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echo Not enough lines of output when searching for "$2" 1>&2 |
121 |
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fi |
122 |
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return 99 |
123 |
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fi |
124 |
jmc |
1.67 |
if [ $lncntA -ne $lncntB ]; then |
125 |
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if [ $verbose -gt 0 ]; then |
126 |
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echo Not same Nb of lines when searching for "$2" ":" $lncntA $lncntB 1>&2 |
127 |
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fi |
128 |
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return 99 |
129 |
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fi |
130 |
edhill |
1.72 |
has_nan=`cat tmp1.txt | grep -i nan | wc -l` |
131 |
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if [ $has_nan -gt 0 ] ; then |
132 |
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echo testoutput_for_prop: output.txt contains $has_nan NaN values 1>&2 |
133 |
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return 99 |
134 |
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fi |
135 |
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has_inf=`cat tmp1.txt | grep -i inf | wc -l` |
136 |
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if [ $has_inf -gt 0 ] ; then |
137 |
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echo testoutput_for_prop: output.txt contains $has_inf Inf values 1>&2 |
138 |
jmc |
1.71 |
return 99 |
139 |
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fi |
140 |
edhill |
1.1 |
if [ $debug -gt 0 ]; then |
141 |
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echo testoutput_for_prop: join tmp1.txt tmp2.txt 1>&2 |
142 |
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fi |
143 |
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join tmp1.txt tmp2.txt | awk '{print $1 " " $2 " " $3}' > tmp3.txt |
144 |
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if [ $debug -gt 0 ]; then |
145 |
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echo testoutput_for_prop: compare_lines 1>&2 |
146 |
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fi |
147 |
edhill |
1.22 |
if [ $verbose -gt 1 ]; then |
148 |
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cat tmp3.txt 1>&2 |
149 |
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fi |
150 |
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echo "-1" >> tmp3.txt |
151 |
edhill |
1.23 |
# On the SGI O3K (*not* the O2K), "cat -n" inserts a ":" after the line number |
152 |
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cat tmp3.txt | sed -e 's|:||g' > tmp4.txt |
153 |
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digits_of_similarity=`./tmp_cmpnum < tmp4.txt` |
154 |
edhill |
1.1 |
if [ $digits_of_similarity -eq 99 ]; then |
155 |
|
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if [ $verbose -gt 0 ]; then |
156 |
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echo testoutput_for_prop: No comparison was available for \"$2\" 1>&2 |
157 |
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fi |
158 |
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digits_of_similarity=99 |
159 |
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else |
160 |
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if [ $verbose -gt 0 ]; then |
161 |
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echo There were $digits_of_similarity decimal places of similarity for \"$2\" 1>&2 |
162 |
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fi |
163 |
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fi |
164 |
edhill |
1.23 |
rm -f tmp1.txt tmp2.txt tmp3.txt tmp4.txt |
165 |
edhill |
1.1 |
|
166 |
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return $digits_of_similarity |
167 |
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} |
168 |
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169 |
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dashnum() |
170 |
|
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{ |
171 |
|
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# dashnum n1 n2 n3 ... |
172 |
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# |
173 |
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# print numbers using %3i format or "--" if number = 99 |
174 |
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|
175 |
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for num in $@ ; do |
176 |
|
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if [ $num = 99 ]; then |
177 |
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printf ' --' |
178 |
|
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else |
179 |
|
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printf '%3i' $num |
180 |
|
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fi |
181 |
|
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done |
182 |
|
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} |
183 |
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|
184 |
edhill |
1.24 |
testoutput_ad() |
185 |
|
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{ |
186 |
jmc |
1.78 |
grep $3 $1/results_ad/output_adm.txt | awk '{print NR " " $5}' > t05.txt |
187 |
|
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grep $3 $1/$2/output_adm.txt | awk '{print NR " " $5}' > t15.txt |
188 |
|
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grep $3 $1/results_ad/output_adm.txt | awk '{print NR " " $6}' > t06.txt |
189 |
|
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grep $3 $1/$2/output_adm.txt | awk '{print NR " " $6}' > t16.txt |
190 |
edhill |
1.24 |
join t05.txt t15.txt > t5.txt |
191 |
|
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join t06.txt t16.txt > t6.txt |
192 |
|
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echo "-1" >> t5.txt |
193 |
|
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echo "-1" >> t6.txt |
194 |
|
|
digits_5=`./tmp_cmpnum < t5.txt` |
195 |
|
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digits_6=`./tmp_cmpnum < t6.txt` |
196 |
|
|
dashnum $digits_5 $digits_6 |
197 |
|
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rm -f t[01][56].txt t[56].txt |
198 |
|
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} |
199 |
|
|
|
200 |
edhill |
1.49 |
check_for_add_mon_output() |
201 |
|
|
{ |
202 |
|
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# Check for additional types of monitor output |
203 |
|
|
if test "x$1" = x ; then |
204 |
|
|
return |
205 |
|
|
fi |
206 |
|
|
|
207 |
edhill |
1.50 |
for ii in $PTRACERS_NUM ; do |
208 |
|
|
eval "HAVE_PTR0"$ii"=f" |
209 |
|
|
done |
210 |
|
|
|
211 |
edhill |
1.49 |
ptr_add="trcstat_ptracerXX_min trcstat_ptracerXX_max" |
212 |
|
|
ptr_add="$ptr_add trcstat_ptracerXX_mean trcstat_ptracerXX_sd" |
213 |
edhill |
1.50 |
for ii in $PTRACERS_NUM ; do |
214 |
edhill |
1.49 |
for jj in $ptr_add ; do |
215 |
|
|
name=`eval "echo $jj | sed -e 's|XX|0"$ii"|g'"` |
216 |
|
|
tst=`grep $name $1 | wc -l | awk '{print $1}'` |
217 |
|
|
if test ! "x$tst" = x0 ; then |
218 |
|
|
eval "HAVE_PTR0"$ii"=t" |
219 |
|
|
fi |
220 |
|
|
done |
221 |
|
|
# eval 'echo "HAVE_PTR0'$ii' = $HAVE_PTR0'$ii'"' |
222 |
|
|
done |
223 |
|
|
} |
224 |
|
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|
225 |
edhill |
1.1 |
testoutput() |
226 |
|
|
{ |
227 |
edhill |
1.34 |
# testoutput directory subdir extension |
228 |
edhill |
1.1 |
# |
229 |
|
|
# test output in "directory" |
230 |
edhill |
1.24 |
if test "x$ADM" = x ; then |
231 |
|
|
if [ $debug -gt 0 ]; then |
232 |
|
|
echo testoutput: testoutput_for_prop $1 cg2d_init_res 1>&2 |
233 |
|
|
fi |
234 |
edhill |
1.34 |
testoutput_for_prop $1 "cg2d_init_res" "cg2d init. residual" $2 $3; cg2dres=$? |
235 |
edhill |
1.24 |
if [ $debug -gt 0 ]; then |
236 |
|
|
echo testoutput: cg2dres=$cg2dres 1>&2 |
237 |
|
|
fi |
238 |
edhill |
1.34 |
testoutput_for_prop $1 "dynstat_theta_min" "theta minimum" $2 $3; tmin=$? |
239 |
|
|
testoutput_for_prop $1 "dynstat_theta_max" "theta maximum" $2 $3; tmax=$? |
240 |
|
|
testoutput_for_prop $1 "dynstat_theta_mean" "theta mean" $2 $3; tmean=$? |
241 |
|
|
testoutput_for_prop $1 "dynstat_theta_sd" "theta s.d." $2 $3; tsd=$? |
242 |
|
|
testoutput_for_prop $1 "dynstat_salt_min" "salt minimum" $2 $3; smin=$? |
243 |
|
|
testoutput_for_prop $1 "dynstat_salt_max" "salt maximum" $2 $3; smax=$? |
244 |
|
|
testoutput_for_prop $1 "dynstat_salt_mean" "salt mean" $2 $3; smean=$? |
245 |
|
|
testoutput_for_prop $1 "dynstat_salt_sd" "salt s.d." $2 $3; ssd=$? |
246 |
|
|
testoutput_for_prop $1 "dynstat_uvel_min" "U minimum" $2 $3; umin=$? |
247 |
|
|
testoutput_for_prop $1 "dynstat_uvel_max" "U maximum" $2 $3; umax=$? |
248 |
|
|
testoutput_for_prop $1 "dynstat_uvel_mean" "U mean" $2 $3; umean=$? |
249 |
|
|
testoutput_for_prop $1 "dynstat_uvel_sd" "U s.d." $2 $3; usd=$? |
250 |
|
|
testoutput_for_prop $1 "dynstat_vvel_min" "V minimum" $2 $3; vmin=$? |
251 |
|
|
testoutput_for_prop $1 "dynstat_vvel_max" "V maximum" $2 $3; vmax=$? |
252 |
|
|
testoutput_for_prop $1 "dynstat_vvel_mean" "V mean" $2 $3; vmean=$? |
253 |
|
|
testoutput_for_prop $1 "dynstat_vvel_sd" "V s.d." $2 $3; vsd=$? |
254 |
edhill |
1.49 |
|
255 |
edhill |
1.50 |
# This is for PTRACERS |
256 |
|
|
for ii in $PTRACERS_NUM ; do |
257 |
|
|
eval `echo "p0"$ii"_min=99"` |
258 |
|
|
eval `echo "p0"$ii"_max=99"` |
259 |
|
|
eval `echo "p0"$ii"_mean=99"` |
260 |
|
|
eval `echo "p0"$ii"_sd=99"` |
261 |
|
|
tst=`eval 'echo "$HAVE_PTR0'$ii'"'` |
262 |
|
|
#echo 'tst = '$tst |
263 |
|
|
if test "x$tst" = xt ; then |
264 |
|
|
a="trcstat_ptracer0" |
265 |
|
|
testoutput_for_prop $1 "$a"$ii"_min" "p0"$ii"_min" $2 $3 |
266 |
|
|
RETVAL=$? ; eval `echo "p0"$ii"_min="$RETVAL` |
267 |
|
|
testoutput_for_prop $1 "$a"$ii"_max" "p0"$ii"_max" $2 $3 |
268 |
|
|
RETVAL=$? ; eval `echo "p0"$ii"_max="$RETVAL` |
269 |
|
|
testoutput_for_prop $1 "$a"$ii"_mean" "p0"$ii"_mean" $2 $3 |
270 |
|
|
RETVAL=$? ; eval `echo "p0"$ii"_mean="$RETVAL` |
271 |
|
|
testoutput_for_prop $1 "$a"$ii"_sd" "p0"$ii"_sd" $2 $3 |
272 |
|
|
RETVAL=$? ; eval `echo "p0"$ii"_sd="$RETVAL` |
273 |
|
|
fi |
274 |
edhill |
1.49 |
done |
275 |
|
|
|
276 |
|
|
allargs="$cg2dres $tmin $tmax $tmean $tsd $smin $smax $smean $ssd" |
277 |
|
|
allargs="$allargs $umin $umax $umean $usd $vmin $vmax $vmean $vsd" |
278 |
|
|
allargs="$allargs $p01_min $p01_max $p01_mean $p01_sd" |
279 |
|
|
allargs="$allargs $p02_min $p02_max $p02_mean $p02_sd" |
280 |
|
|
allargs="$allargs $p03_min $p03_max $p03_mean $p03_sd" |
281 |
|
|
allargs="$allargs $p04_min $p04_max $p04_mean $p04_sd" |
282 |
|
|
allargs="$allargs $p05_min $p05_max $p05_mean $p05_sd" |
283 |
|
|
|
284 |
|
|
eval "dashnum $allargs" |
285 |
|
|
|
286 |
edhill |
1.24 |
else |
287 |
|
|
testoutput_ad $1 $2 "precision_grdchk_result" |
288 |
edhill |
1.1 |
fi |
289 |
|
|
} |
290 |
|
|
|
291 |
|
|
genmakemodel() |
292 |
|
|
{ |
293 |
|
|
# genmakemodel directory |
294 |
edhill |
1.10 |
if test "x$NOGENMAKE" = xt ; then |
295 |
|
|
echo "genmake skipped!" |
296 |
|
|
else |
297 |
edhill |
1.34 |
if test "x$BASH" = x ; then |
298 |
|
|
GENMAKE2="../../../tools/genmake2" |
299 |
|
|
else |
300 |
|
|
GENMAKE2="$BASH ../../../tools/genmake2 -bash $BASH" |
301 |
|
|
fi |
302 |
edhill |
1.10 |
( |
303 |
|
|
cd $1; |
304 |
edhill |
1.24 |
command="$GENMAKE2 -ds -m $MAKE" |
305 |
|
|
if test "x$ADM" = x ; then |
306 |
|
|
command="$command --mods=../code" |
307 |
|
|
else |
308 |
|
|
command="$command --mods=../code_ad" |
309 |
|
|
fi |
310 |
edhill |
1.10 |
if test "x$OPTFILE" != xNONE ; then |
311 |
|
|
command="$command --optfile=$OPTFILE" |
312 |
|
|
fi |
313 |
|
|
if test "x$IEEE" != x ; then |
314 |
|
|
command="$command -ieee" |
315 |
|
|
fi |
316 |
edhill |
1.66 |
if test "x$MPI" = xt ; then |
317 |
|
|
command="$command -mpi" |
318 |
|
|
fi |
319 |
edhill |
1.10 |
printf 'genmake ... ' 1>&2 |
320 |
|
|
$command > make.log 2>&1 |
321 |
|
|
RETVAL=$? |
322 |
edhill |
1.44 |
# Reduce the size of the testing emails! |
323 |
edhill |
1.47 |
head -100 Makefile > $CDIR/Makefile_head |
324 |
edhill |
1.10 |
if test "x$RETVAL" != x0 ; then |
325 |
|
|
tail make.log |
326 |
|
|
echo "genmakemodel: genmake failed" 1>&2 |
327 |
edhill |
1.21 |
cp genmake_* make.log $CDIR |
328 |
edhill |
1.10 |
return 1 |
329 |
|
|
else |
330 |
edhill |
1.20 |
echo "successful" 1>&2 |
331 |
edhill |
1.1 |
fi |
332 |
edhill |
1.10 |
) |
333 |
|
|
fi |
334 |
edhill |
1.1 |
} |
335 |
|
|
|
336 |
|
|
makeclean() |
337 |
|
|
{ |
338 |
|
|
# makeclean directory |
339 |
edhill |
1.10 |
if test "x$NOCLEAN" = xt ; then |
340 |
jmc |
1.83 |
echo "make Clean skipped!" |
341 |
edhill |
1.10 |
else |
342 |
|
|
( |
343 |
|
|
cd $1; |
344 |
jmc |
1.83 |
#if test -e output.txt ; then rm -f output.txt ; fi |
345 |
edhill |
1.10 |
if test -r Makefile ; then |
346 |
jmc |
1.83 |
printf 'clean build-dir: make Clean ... ' 2>&1 |
347 |
|
|
$MAKE Clean >> make.log 2>&1 |
348 |
edhill |
1.10 |
RETVAL=$? |
349 |
|
|
if test "x$RETVAL" != x0 ; then |
350 |
|
|
tail make.log |
351 |
jmc |
1.83 |
echo "makeclean: \"make Clean\" failed" 1>&2 |
352 |
edhill |
1.10 |
cp make.log $CDIR"/make.log" |
353 |
|
|
return 1 |
354 |
|
|
fi |
355 |
|
|
fi |
356 |
edhill |
1.20 |
echo successful 1>&2 |
357 |
edhill |
1.10 |
exit 0 |
358 |
|
|
) |
359 |
|
|
fi |
360 |
|
|
} |
361 |
|
|
|
362 |
jmc |
1.83 |
run_clean() |
363 |
edhill |
1.68 |
{ |
364 |
jmc |
1.83 |
# run_clean directory |
365 |
|
|
if test "x$NOCLEAN" = xt ; then |
366 |
|
|
echo "run_clean skipped!" |
367 |
|
|
else |
368 |
edhill |
1.68 |
( |
369 |
|
|
cd $1; |
370 |
jmc |
1.83 |
printf 'clean run-dir ... ' 2>&1 |
371 |
|
|
# part of what is done after "make clean" when doing "make CLEAN" |
372 |
|
|
find . -name "*.meta" -exec rm {} \; |
373 |
|
|
find . -name "*.data" -exec rm {} \; |
374 |
|
|
find . -name "fort.*" -exec rm {} \; |
375 |
|
|
find . -type l -exec rm {} \; |
376 |
|
|
rm -f $EXECUTABLE *.txt STD* *diagnostics.log datetime |
377 |
|
|
rm -rf mnc_test_* |
378 |
|
|
echo successful 1>&2 |
379 |
edhill |
1.68 |
exit 0 |
380 |
|
|
) |
381 |
|
|
fi |
382 |
|
|
} |
383 |
|
|
|
384 |
edhill |
1.10 |
makedependmodel() |
385 |
|
|
{ |
386 |
|
|
# makedependmodel directory |
387 |
|
|
if test "x$NODEPEND" = xt ; then |
388 |
|
|
echo "make depend skipped!" |
389 |
|
|
else |
390 |
|
|
( |
391 |
|
|
cd $1; |
392 |
|
|
printf 'make depend ... ' 1>&2 |
393 |
|
|
$MAKE depend >> make.log 2>&1 |
394 |
edhill |
1.1 |
RETVAL=$? |
395 |
|
|
if test "x$RETVAL" != x0 ; then |
396 |
|
|
tail make.log |
397 |
edhill |
1.10 |
echo "makedependmodel: make depend failed" 1>&2 |
398 |
edhill |
1.1 |
cp make.log $CDIR"/make.log" |
399 |
|
|
return 1 |
400 |
edhill |
1.10 |
else |
401 |
edhill |
1.20 |
echo successful 1>&2 |
402 |
edhill |
1.1 |
fi |
403 |
edhill |
1.10 |
) |
404 |
|
|
fi |
405 |
edhill |
1.1 |
} |
406 |
|
|
|
407 |
|
|
makemodel() |
408 |
|
|
{ |
409 |
|
|
# makemodel directory |
410 |
|
|
( |
411 |
|
|
cd $1; |
412 |
|
|
if test -r Makefile ; then |
413 |
|
|
printf 'make ... ' 1>&2 |
414 |
edhill |
1.24 |
if test "x$ADM" = x ; then |
415 |
edhill |
1.43 |
if test "x$JOBS" = x ; then |
416 |
|
|
$MAKE >> make.log 2>&1 |
417 |
|
|
else |
418 |
|
|
$MAKE -j $JOBS >> make.log 2>&1 |
419 |
|
|
fi |
420 |
edhill |
1.24 |
else |
421 |
|
|
$MAKE adall >> make.log 2>&1 |
422 |
|
|
fi |
423 |
edhill |
1.1 |
RETVAL=$? |
424 |
|
|
if test "x$RETVAL" != x0 ; then |
425 |
|
|
tail make.log |
426 |
|
|
echo failed 1>&2 |
427 |
|
|
cp make.log $CDIR"/make.log" |
428 |
|
|
return 1 |
429 |
|
|
else |
430 |
edhill |
1.20 |
echo successful 1>&2 |
431 |
edhill |
1.1 |
fi |
432 |
|
|
fi |
433 |
|
|
) |
434 |
|
|
} |
435 |
|
|
|
436 |
edhill |
1.27 |
symlink_mpifiles() |
437 |
|
|
{ |
438 |
|
|
# Put special links so that MPI specific files are used |
439 |
|
|
# This MUST be invoked between makeclean and makelinks because |
440 |
|
|
# the Makefile will link to non-mpi files by default |
441 |
|
|
|
442 |
|
|
dir=$1 |
443 |
|
|
code_dir=$2 |
444 |
|
|
BUILD_DIR=$dir/$3 |
445 |
|
|
CODE_DIR=$dir/$code_dir |
446 |
edhill |
1.45 |
|
447 |
edhill |
1.27 |
# These are files that should replace their counter-part when using -mpi |
448 |
|
|
MPI_FILES=`(cd $CODE_DIR; find . -name "*_mpi")` |
449 |
|
|
|
450 |
|
|
# Is this an MPI run? |
451 |
|
|
if test "x$MPI" = xt ; then |
452 |
|
|
# YES: We symbolically link these files to the build |
453 |
|
|
# dir so long as there is no real file in place |
454 |
|
|
for ii in $MPI_FILES ; do |
455 |
|
|
i=`echo $ii | sed 's:^\./::'` |
456 |
|
|
name=`echo $i | sed 's:_mpi::' ` |
457 |
|
|
cmp $CODE_DIR/$i $BUILD_DIR/$name > /dev/null 2>&1 |
458 |
|
|
RETVAL=$? |
459 |
|
|
if test "x$RETVAL" != x0 ; then |
460 |
|
|
if ! test -f $BUILD_DIR/$i ; then |
461 |
edhill |
1.45 |
#echo Linking $name to $i |
462 |
edhill |
1.27 |
(cd $BUILD_DIR; ln -sf ../$code_dir/$i $name) |
463 |
|
|
fi |
464 |
|
|
fi |
465 |
|
|
done |
466 |
|
|
else |
467 |
edhill |
1.45 |
# NO: We undo any _mpi symbolically linked files |
468 |
edhill |
1.27 |
for ii in $MPI_FILES ; do |
469 |
|
|
i=`echo $ii | sed 's:^\./::'` |
470 |
|
|
name=`echo $i | sed 's:_mpi::' ` |
471 |
|
|
if test -L $BUILD_DIR/$name ; then |
472 |
edhill |
1.45 |
cmp $BUILD_DIR/$name "../$code_dir/$name"_mpi > /dev/null 2>&1 |
473 |
|
|
RETVAL=$? |
474 |
|
|
if test "x$RETVAL" = x0 ; then |
475 |
|
|
#echo Un-linking $name from $linktarg |
476 |
edhill |
1.27 |
rm -f $BUILD_DIR/$name |
477 |
|
|
fi |
478 |
|
|
fi |
479 |
|
|
done |
480 |
|
|
fi |
481 |
|
|
|
482 |
|
|
} |
483 |
|
|
|
484 |
edhill |
1.1 |
linkdata() |
485 |
|
|
{ |
486 |
jmc |
1.83 |
# linkdata run_dir input_dir_1 input_dir_2 ... |
487 |
edhill |
1.1 |
# |
488 |
|
|
# symbolically link data files to run directory |
489 |
jmc |
1.83 |
if test -d $1 ; then |
490 |
edhill |
1.12 |
( |
491 |
jmc |
1.83 |
cd $1 ; shift |
492 |
|
|
if test -r "../"$1"/eedata.mth" ; then |
493 |
|
|
# found eedata.mth in 1rst input dir and it is readable |
494 |
|
|
if test "x$MULTI_THREAD" = "xt" ; then |
495 |
|
|
# multi-threaded test: remove symbolic link & link eedata.mth |
496 |
|
|
if test -h eedata ; then rm -f eedata ; fi |
497 |
|
|
if test ! -r eedata ; then |
498 |
|
|
ln -sf "../"$1"/eedata.mth" eedata ; |
499 |
|
|
printf 'eedata.mth ' 1>&2 |
500 |
edhill |
1.24 |
fi |
501 |
jmc |
1.83 |
else |
502 |
|
|
# not multi-threaded test: remove eedata symbolic link |
503 |
|
|
if test -h eedata ; then rm -f eedata ; fi |
504 |
|
|
fi |
505 |
|
|
fi |
506 |
|
|
for ldir in $* ; do |
507 |
|
|
if test -d "../"$ldir ; then |
508 |
|
|
printf 'ldir='${ldir} 1>&2 |
509 |
|
|
files=`( cd "../"$ldir ; ls -1 | grep -v CVS )` |
510 |
|
|
for i in $files ; do |
511 |
|
|
if test ! -d "../"$ldir/$i ; then |
512 |
|
|
if test ! -r $i ; then |
513 |
|
|
printf ' '$i 1>&2 |
514 |
|
|
ln -sf "../"$ldir"/"$i $i |
515 |
|
|
fi |
516 |
|
|
fi |
517 |
|
|
done |
518 |
|
|
if test -x "../"$ldir"/"prepare_run ; then |
519 |
|
|
"../"$ldir"/"prepare_run |
520 |
edhill |
1.24 |
fi |
521 |
jmc |
1.83 |
printf ' ; ' 1>&2 |
522 |
jmc |
1.82 |
fi |
523 |
jmc |
1.83 |
done |
524 |
edhill |
1.12 |
) |
525 |
edhill |
1.1 |
fi |
526 |
|
|
} |
527 |
|
|
|
528 |
|
|
runmodel() |
529 |
|
|
{ |
530 |
edhill |
1.6 |
# runmodel directory |
531 |
edhill |
1.1 |
# |
532 |
edhill |
1.24 |
# runs "$COMMAND in "directory" |
533 |
edhill |
1.6 |
# (where "$COMMAND" is relative to "directory") |
534 |
edhill |
1.1 |
( |
535 |
|
|
cd $1 |
536 |
jmc |
1.75 |
printf 'runmodel in %s ...' $1 1>&2 |
537 |
edhill |
1.6 |
# make output.txt |
538 |
edhill |
1.38 |
echo |
539 |
jmc |
1.46 |
rm -f run.log |
540 |
jmc |
1.83 |
if test ! -x $EXECUTABLE -a -x "../"$builddir"/"$EXECUTABLE ; then |
541 |
|
|
echo " link" $EXECUTABLE "from dir ../"$builddir > run.log |
542 |
|
|
ln -sf "../"$builddir"/"$EXECUTABLE . |
543 |
|
|
else |
544 |
|
|
touch run.log |
545 |
|
|
fi |
546 |
|
|
if test ! -x $EXECUTABLE ; then |
547 |
|
|
echo " no executable:" $EXECUTABLE >> run.log |
548 |
|
|
RETVAL=8 |
549 |
jmc |
1.75 |
else |
550 |
jmc |
1.83 |
if test $OUTPUTFILE -ot $EXECUTABLE ; then |
551 |
|
|
( eval $COMMAND ) >> run.log 2>&1 |
552 |
|
|
RETVAL=$? |
553 |
|
|
else |
554 |
|
|
echo " $OUTPUTFILE is up to date " >> run.log 2>&1 |
555 |
|
|
RETVAL=0 |
556 |
|
|
fi |
557 |
jmc |
1.75 |
fi |
558 |
edhill |
1.39 |
# echo "COMMAND='$COMMAND'" |
559 |
|
|
# echo "pwd='"`pwd`"'" |
560 |
edhill |
1.6 |
if test "x$RETVAL" = x0 ; then |
561 |
jmc |
1.46 |
tail run.log |
562 |
edhill |
1.20 |
echo successful 1>&2 |
563 |
edhill |
1.44 |
# === Reduce the size of the testing emails! |
564 |
|
|
# if test "x$ADM" = x ; then |
565 |
|
|
# cp output.txt $CDIR"/output.txt" |
566 |
|
|
# else |
567 |
jmc |
1.78 |
# cp output_adm.txt $CDIR"/output_adm.txt" |
568 |
edhill |
1.44 |
# fi |
569 |
jmc |
1.48 |
if test -s STDERR.0000 ; then cp STDERR.0000 $CDIR"/STDERR.0000" ; fi |
570 |
edhill |
1.6 |
return 0 |
571 |
|
|
else |
572 |
edhill |
1.20 |
tail run.log |
573 |
|
|
echo failed 1>&2 |
574 |
|
|
cp run.log $CDIR"/run.log" |
575 |
jmc |
1.48 |
if test -s STDERR.0000 ; then cp STDERR.0000 $CDIR"/STDERR.0000" ; fi |
576 |
edhill |
1.6 |
return 1 |
577 |
edhill |
1.1 |
fi |
578 |
|
|
) |
579 |
|
|
} |
580 |
|
|
|
581 |
|
|
createcodelet() |
582 |
|
|
{ |
583 |
|
|
# create codelet for comparing model output |
584 |
|
|
|
585 |
edhill |
1.34 |
printf "creating the comparison code... " |
586 |
edhill |
1.22 |
cat > tmp_cmpnum.c <<EOF |
587 |
|
|
#include <stdio.h> |
588 |
|
|
#include <math.h> |
589 |
|
|
int main( int argc, char** argv ) { |
590 |
adcroft |
1.33 |
int linnum,best,lncnt; |
591 |
edhill |
1.52 |
double a,b,abave,relerr; |
592 |
jmc |
1.57 |
best = -22; |
593 |
adcroft |
1.33 |
lncnt = 0; |
594 |
|
|
while( 1 & (lncnt+=1) < 999 ) { |
595 |
edhill |
1.22 |
scanf("%d", &linnum); |
596 |
|
|
if (linnum == -1) break; |
597 |
|
|
scanf("%lf", &a); scanf("%lf", &b); |
598 |
edhill |
1.52 |
abave = 0.5*(fabs(a)+fabs(b)); |
599 |
|
|
if (abave > 0.0) { |
600 |
|
|
relerr=fabs(a-b)/abave; |
601 |
edhill |
1.64 |
if (relerr > 0.0) { linnum = (int)rint(log10(relerr)); } |
602 |
jmc |
1.57 |
else { linnum = -16 ; } |
603 |
|
|
best = (best > linnum) ? best : linnum; |
604 |
edhill |
1.22 |
} |
605 |
|
|
} |
606 |
adcroft |
1.33 |
if (lncnt == 999) best=-29; |
607 |
edhill |
1.22 |
printf("%d\n", -best); |
608 |
|
|
return 0; |
609 |
|
|
} |
610 |
|
|
EOF |
611 |
edhill |
1.58 |
$CC -o tmp_cmpnum tmp_cmpnum.c -lm |
612 |
edhill |
1.1 |
|
613 |
edhill |
1.22 |
if [ -x ./tmp_cmpnum ]; then |
614 |
edhill |
1.1 |
echo "OK" |
615 |
|
|
return 0 |
616 |
|
|
else |
617 |
|
|
echo |
618 |
edhill |
1.58 |
echo "ERROR: failed to compile comparison code -- please specify" |
619 |
|
|
echo " a C compiler using the CC environment variable." |
620 |
edhill |
1.1 |
exit 1 |
621 |
|
|
fi |
622 |
|
|
} |
623 |
|
|
|
624 |
|
|
formatresults() |
625 |
|
|
{ |
626 |
|
|
# formatresults expt genmake depend make run results* |
627 |
|
|
|
628 |
|
|
nm=$1 |
629 |
|
|
printf '%s %s %s %s' $2 $3 $4 $5 |
630 |
|
|
shift; shift; shift; shift; shift; |
631 |
|
|
printf '%3s' $@ |
632 |
|
|
|
633 |
|
|
if [ $1 = '--' ]; then |
634 |
|
|
printf ' N/O ' |
635 |
|
|
else |
636 |
|
|
if [ $1 -gt 12 ]; then |
637 |
|
|
printf ' pass' |
638 |
|
|
else |
639 |
|
|
printf ' FAIL' |
640 |
|
|
fi |
641 |
|
|
fi |
642 |
|
|
printf ' %s' $nm |
643 |
|
|
printf '\n' |
644 |
|
|
|
645 |
|
|
} |
646 |
|
|
|
647 |
|
|
show_help() |
648 |
|
|
{ |
649 |
|
|
cat - << EOF |
650 |
|
|
$0 [-help] [-quick] [-verbose] dir1 [dir2] [...] |
651 |
edhill |
1.10 |
|
652 |
|
|
-help|-h Show this help message |
653 |
edhill |
1.1 |
-quiet Reduce the amount of output |
654 |
|
|
-verbose Produce copious amounts of output |
655 |
|
|
-debug Produce even more output which will mean nothing to most |
656 |
|
|
-force Do "make CLEAN" before compiling. This forces a complete rebuild. |
657 |
|
|
-clean Do "make CLEAN" after compiling and testing. |
658 |
|
|
-cleanup Aggresively removes all model output, executables and object files |
659 |
|
|
and then exits. Use with care. |
660 |
|
|
|
661 |
|
|
Normal usage: |
662 |
|
|
$0 * Configure, compile, run and analyze in all experiment directories |
663 |
|
|
EOF |
664 |
|
|
} |
665 |
|
|
|
666 |
|
|
scandirs() |
667 |
|
|
{ |
668 |
jmc |
1.81 |
if [ $# -eq 1 ]; then |
669 |
|
|
for arg in * ; do |
670 |
|
|
test -d $arg/$1 && echo $arg |
671 |
|
|
done |
672 |
edhill |
1.1 |
else |
673 |
jmc |
1.81 |
echo $* |
674 |
edhill |
1.1 |
fi |
675 |
|
|
} |
676 |
|
|
|
677 |
|
|
|
678 |
|
|
############################################################################### |
679 |
|
|
|
680 |
|
|
|
681 |
|
|
# Default properties |
682 |
|
|
debug=0 |
683 |
|
|
verbose=1 |
684 |
|
|
clean=0 |
685 |
|
|
expts='' |
686 |
edhill |
1.6 |
# ieee=1 |
687 |
edhill |
1.10 |
|
688 |
edhill |
1.40 |
IEEE=true |
689 |
edhill |
1.10 |
if test "x$MITGCM_IEEE" != x ; then |
690 |
|
|
IEEE=$MITGCM_IEEE |
691 |
|
|
fi |
692 |
|
|
|
693 |
|
|
|
694 |
|
|
CLEANUP=f |
695 |
|
|
QUICK=f |
696 |
|
|
NOGENMAKE=f |
697 |
|
|
NOCLEAN=f |
698 |
|
|
NODEPEND=f |
699 |
edhill |
1.68 |
POSTCLEAN=f |
700 |
edhill |
1.1 |
|
701 |
edhill |
1.4 |
BASH= |
702 |
edhill |
1.10 |
OPTFILE=NONE |
703 |
|
|
ADDRESSES= |
704 |
edhill |
1.1 |
TESTDIRS= |
705 |
|
|
MPACKDIR="../tools/mpack-1.6" |
706 |
edhill |
1.20 |
HAVE_MPACK= |
707 |
edhill |
1.1 |
MPACK="$MPACKDIR/mpack" |
708 |
edhill |
1.24 |
COMMAND= |
709 |
edhill |
1.59 |
if test "x$MAKE" = x ; then |
710 |
|
|
MAKE=make |
711 |
|
|
fi |
712 |
|
|
if test "x$CC" = x ; then |
713 |
|
|
CC=cc |
714 |
|
|
fi |
715 |
edhill |
1.43 |
JOBS= |
716 |
edhill |
1.7 |
MPI=f |
717 |
jmc |
1.83 |
MULTI_THREAD=f |
718 |
jmc |
1.70 |
OUTDIR= |
719 |
edhill |
1.40 |
DELDIR= |
720 |
edhill |
1.1 |
|
721 |
edhill |
1.24 |
ADM= |
722 |
|
|
|
723 |
edhill |
1.49 |
# Additional monitor types |
724 |
edhill |
1.50 |
PTRACERS_NUM="1 2 3 4 5" |
725 |
edhill |
1.49 |
|
726 |
edhill |
1.34 |
printf "parsing options... " |
727 |
edhill |
1.1 |
|
728 |
|
|
ac_prev= |
729 |
|
|
for ac_option ; do |
730 |
|
|
|
731 |
|
|
# If the previous option needs an argument, assign it. |
732 |
|
|
if test -n "$ac_prev"; then |
733 |
|
|
eval "$ac_prev=\$ac_option" |
734 |
|
|
ac_prev= |
735 |
|
|
continue |
736 |
|
|
fi |
737 |
|
|
|
738 |
|
|
ac_optarg=`expr "x$ac_option" : 'x[^=]*=\(.*\)'` |
739 |
|
|
|
740 |
|
|
case $ac_option in |
741 |
|
|
|
742 |
|
|
-help | --help | -h | --h) |
743 |
|
|
usage ;; |
744 |
|
|
|
745 |
edhill |
1.2 |
-optfile | --optfile | -of | --of) |
746 |
edhill |
1.10 |
ac_prev=OPTFILE ;; |
747 |
edhill |
1.2 |
-optfile=* | --optfile=* | -of=* | --of=*) |
748 |
edhill |
1.10 |
OPTFILE=$ac_optarg ;; |
749 |
edhill |
1.1 |
|
750 |
|
|
-addr | --addr | -a | --a) |
751 |
|
|
ac_prev=ADDRESSES ;; |
752 |
|
|
-addr=* | --addr=*) |
753 |
|
|
ADDRESSES=$ac_optarg ;; |
754 |
|
|
|
755 |
|
|
-tdir | --tdir | -t | --t) |
756 |
|
|
ac_prev=TESTDIRS ;; |
757 |
|
|
-tdir=* | --tdir=*) |
758 |
|
|
TESTDIRS=$ac_optarg ;; |
759 |
edhill |
1.4 |
|
760 |
|
|
-bash | --bash | -b | --b) |
761 |
|
|
ac_prev=BASH ;; |
762 |
|
|
-bash=* | --bash=*) |
763 |
|
|
BASH=$ac_optarg ;; |
764 |
edhill |
1.5 |
|
765 |
edhill |
1.6 |
-command | --command | -c | --c) |
766 |
|
|
ac_prev=COMMAND ;; |
767 |
|
|
-command=* | --command=*) |
768 |
|
|
COMMAND=$ac_optarg ;; |
769 |
edhill |
1.8 |
|
770 |
|
|
-make | --make | -m | --m) |
771 |
|
|
ac_prev=MAKE ;; |
772 |
|
|
-make=* | --make=*) |
773 |
|
|
MAKE=$ac_optarg ;; |
774 |
edhill |
1.1 |
|
775 |
jmc |
1.70 |
-odir | --odir) |
776 |
|
|
ac_prev=OUTDIR ;; |
777 |
|
|
-odir=* | --odir=*) |
778 |
|
|
OUTDIR=$ac_optarg ;; |
779 |
|
|
|
780 |
edhill |
1.50 |
-ptracers | --ptracers | -ptr | --ptr) |
781 |
|
|
ac_prev=PTRACERS_NUM ;; |
782 |
|
|
-ptracers=* | --ptracers=* | -ptr=* | --ptr=*) |
783 |
|
|
PTRACERS_NUM=$ac_optarg ;; |
784 |
|
|
|
785 |
edhill |
1.43 |
-j) ac_prev=JOBS ;; |
786 |
|
|
-j=*) JOBS=$ac_optarg ;; |
787 |
|
|
|
788 |
edhill |
1.10 |
-clean | --clean) |
789 |
jmc |
1.69 |
CLEANUP=t ; DELDIR=t ;; |
790 |
edhill |
1.10 |
|
791 |
|
|
-quick | --quick | -q | --q) |
792 |
|
|
QUICK=t ;; |
793 |
|
|
-nogenmake | --nogenmake | -ng | --ng) |
794 |
|
|
NOGENMAKE=t ;; |
795 |
|
|
-noclean | --noclean | -nc | --nc) |
796 |
|
|
NOCLEAN=t ;; |
797 |
|
|
-nodepend | --nodepend | -nd | --nd) |
798 |
|
|
NODEPEND=t ;; |
799 |
|
|
|
800 |
edhill |
1.68 |
-postclean | --postclean | -pc | --pc) |
801 |
|
|
POSTCLEAN=t ;; |
802 |
|
|
|
803 |
edhill |
1.18 |
-mpi) MPI=t ;; |
804 |
edhill |
1.10 |
|
805 |
jmc |
1.83 |
-mth) MULTI_THREAD=t ;; |
806 |
|
|
|
807 |
edhill |
1.24 |
-adm | -ad) ADM=t ;; |
808 |
|
|
|
809 |
edhill |
1.10 |
-ieee) IEEE=true ;; |
810 |
|
|
-noieee) IEEE= ;; |
811 |
|
|
|
812 |
edhill |
1.1 |
-verbose) verbose=2 ;; |
813 |
|
|
-debug) debug=1 ;; |
814 |
|
|
-quiet) verbose=0 ;; |
815 |
|
|
|
816 |
edhill |
1.40 |
-deldir | -dd) DELDIR=t ;; |
817 |
|
|
|
818 |
edhill |
1.1 |
-*) |
819 |
|
|
echo "Error: unrecognized option: "$ac_option |
820 |
|
|
usage |
821 |
|
|
;; |
822 |
|
|
|
823 |
|
|
*) |
824 |
|
|
echo "Error: unrecognized argument: "$ac_option |
825 |
|
|
usage |
826 |
|
|
;; |
827 |
|
|
|
828 |
|
|
esac |
829 |
|
|
|
830 |
|
|
done |
831 |
|
|
|
832 |
edhill |
1.10 |
if test "x$QUICK" = xt ; then |
833 |
|
|
NOGENMAKE=t |
834 |
|
|
NOCLEAN=t |
835 |
|
|
NODEPEND=t |
836 |
|
|
fi |
837 |
|
|
|
838 |
edhill |
1.1 |
if test "x$TESTDIRS" = x ; then |
839 |
jmc |
1.81 |
if test "x$ADM" = xt ; then |
840 |
|
|
TESTDIRS=`scandirs results_ad` |
841 |
|
|
else |
842 |
|
|
TESTDIRS=`scandirs results` |
843 |
|
|
fi |
844 |
jmc |
1.84 |
else |
845 |
|
|
#- expand group of experiments: |
846 |
|
|
LIST=" " |
847 |
|
|
for xx in $TESTDIRS |
848 |
|
|
do |
849 |
|
|
case $xx in |
850 |
|
|
'basic') LIST=${LIST}" aim.5l_cs front_relax global_ocean.90x40x15" |
851 |
|
|
LIST=${LIST}" hs94.128x64x5 tutorial_barotropic_gyre" |
852 |
|
|
LIST=${LIST}" tutorial_global_oce_biogeo tutorial_plume_on_slope" |
853 |
|
|
;; |
854 |
|
|
'tutorials') |
855 |
|
|
LIST=${LIST}" "`ls | grep 'tutorial_'` ;; |
856 |
|
|
*) LIST=${LIST}" "$xx ;; |
857 |
|
|
esac |
858 |
|
|
done |
859 |
|
|
#echo 'LIST='${LIST}'<' |
860 |
|
|
#- remove duplicate and non-directory: |
861 |
|
|
TESTDIRS=" " |
862 |
|
|
for xx in $LIST |
863 |
|
|
do |
864 |
|
|
if test -d $xx ; then |
865 |
|
|
yy=`echo $TESTDIRS | grep -c $xx` |
866 |
|
|
if test $yy = 0 ; then TESTDIRS=${TESTDIRS}" "$xx ; fi |
867 |
|
|
else |
868 |
|
|
echo " -- skip \"$xx\" : not a directory !" |
869 |
|
|
fi |
870 |
|
|
done |
871 |
edhill |
1.1 |
fi |
872 |
jmc |
1.84 |
#echo 'TESTDIRS='${TESTDIRS}'<' |
873 |
edhill |
1.1 |
|
874 |
edhill |
1.10 |
if test "x$OPTFILE" = xNONE -a "x$MITGCM_OF" != x ; then |
875 |
|
|
OPTFILE=$MITGCM_OF |
876 |
|
|
fi |
877 |
|
|
|
878 |
jmc |
1.76 |
if test "x$ADM" = xt ; then |
879 |
|
|
EXECUTABLE="mitgcmuv_ad" |
880 |
jmc |
1.78 |
OUTPUTFILE="output_adm.txt" |
881 |
jmc |
1.76 |
else |
882 |
|
|
EXECUTABLE="mitgcmuv" |
883 |
|
|
OUTPUTFILE="output.txt" |
884 |
|
|
fi |
885 |
|
|
|
886 |
edhill |
1.24 |
if test "x$ADM" = xt -a "x$COMMAND" = x ; then |
887 |
jmc |
1.77 |
COMMAND="./$EXECUTABLE > $OUTPUTFILE" |
888 |
edhill |
1.24 |
fi |
889 |
|
|
|
890 |
|
|
if test "x$COMMAND" = x ; then |
891 |
jmc |
1.76 |
COMMAND="./$EXECUTABLE > $OUTPUTFILE" |
892 |
edhill |
1.24 |
fi |
893 |
|
|
|
894 |
jmc |
1.76 |
#echo "OK" |
895 |
|
|
echo "OK (COMMAND= $COMMAND )" |
896 |
edhill |
1.1 |
|
897 |
|
|
# create the FORTRAN comparison code |
898 |
|
|
createcodelet |
899 |
|
|
|
900 |
|
|
# build the mpack utility |
901 |
edhill |
1.31 |
if test "x$ADDRESSES" = xNONE -o "x$ADDRESSES" = x ; then |
902 |
edhill |
1.32 |
echo "skipping mpack build" |
903 |
|
|
else |
904 |
edhill |
1.31 |
build_mpack |
905 |
|
|
fi |
906 |
edhill |
1.1 |
|
907 |
|
|
# Create a uniquely named directory to store results |
908 |
|
|
MACH=`hostname` |
909 |
edhill |
1.2 |
UNAMEA=`uname -a` |
910 |
edhill |
1.1 |
DATE=`date +%Y%m%d` |
911 |
edhill |
1.25 |
BASE="tr_"$MACH"_"$DATE"_" |
912 |
jmc |
1.70 |
if test "x$OUTDIR" != x ; then |
913 |
|
|
BASE="tr_"$OUTDIR"_"$DATE"_" |
914 |
|
|
fi |
915 |
edhill |
1.1 |
DNUM=0 |
916 |
|
|
DRESULTS="$BASE$DNUM" |
917 |
|
|
while test -e $DRESULTS ; do |
918 |
|
|
DNUM=$(( $DNUM + 1 )) |
919 |
|
|
DRESULTS="$BASE$DNUM" |
920 |
|
|
done |
921 |
|
|
mkdir $DRESULTS |
922 |
|
|
RETVAL=$? |
923 |
|
|
if test "x$RETVAL" != x0 ; then |
924 |
edhill |
1.20 |
echo "ERROR: Can't create results directory \"./$DRESULTS\"" |
925 |
edhill |
1.1 |
exit 1 |
926 |
|
|
fi |
927 |
|
|
SUMMARY="$DRESULTS/summary.txt" |
928 |
edhill |
1.34 |
printf "Start time: " >> $SUMMARY |
929 |
edhill |
1.16 |
start_date=`date` |
930 |
edhill |
1.17 |
echo $start_date > $SUMMARY |
931 |
edhill |
1.1 |
|
932 |
edhill |
1.11 |
of_path= |
933 |
edhill |
1.10 |
if test "x$OPTFILE" != xNONE ; then |
934 |
|
|
if test -r $OPTFILE ; then |
935 |
edhill |
1.11 |
# get the path |
936 |
|
|
path=${OPTFILE%/*} |
937 |
|
|
if test "x$path" = x ; then |
938 |
|
|
of_path=`pwd` |
939 |
|
|
else |
940 |
|
|
of_path=`( cd $path > /dev/null 2>&1 ; pwd )` |
941 |
|
|
fi |
942 |
|
|
file=${OPTFILE##*/} |
943 |
|
|
OPTFILE=$of_path/$file |
944 |
edhill |
1.21 |
cp $OPTFILE $DRESULTS |
945 |
|
|
echo >> $SUMMARY |
946 |
|
|
echo " OPTFILE=$OPTFILE" >> $SUMMARY |
947 |
edhill |
1.11 |
else |
948 |
edhill |
1.21 |
echo | tee $SUMMARY |
949 |
|
|
echo "ERROR: can't read OPTFILE=\"$OPTFILE\"" | tee $SUMMARY |
950 |
|
|
exit 1 |
951 |
edhill |
1.10 |
fi |
952 |
edhill |
1.21 |
else |
953 |
|
|
echo >> $SUMMARY |
954 |
|
|
echo "No \"OPTFILE\" was explicitly specified by testreport," >> $SUMMARY |
955 |
|
|
echo " so the genmake default will be used." >> $SUMMARY |
956 |
edhill |
1.10 |
fi |
957 |
|
|
echo |
958 |
|
|
echo >> $SUMMARY |
959 |
edhill |
1.24 |
if test "x$ADM" = x ; then |
960 |
edhill |
1.49 |
line_0=" ----T----- ----S----- ----U----- ----V-----" |
961 |
|
|
line_1="G D M c m s m s m s m s" |
962 |
|
|
line_2="E p a R g m m e . m m e . m m e . m m e ." |
963 |
|
|
line_3="N n k u 2 i a a d i a a d i a a d i a a d" |
964 |
|
|
line_4="2 d e n d n x n . n x n . n x n . n x n ." |
965 |
edhill |
1.50 |
for ii in $PTRACERS_NUM ; do |
966 |
edhill |
1.49 |
# tst=`eval 'echo $HAVE_PTR0'$ii` |
967 |
|
|
# if test "x$tst" = xt ; then |
968 |
|
|
line_0="$line_0 --PTR 0"$ii"--" |
969 |
|
|
line_1="$line_1 m s" |
970 |
|
|
line_2="$line_2 m m e ." |
971 |
|
|
line_3="$line_3 i a a d" |
972 |
|
|
line_4="$line_4 n x n ." |
973 |
|
|
# fi |
974 |
|
|
done |
975 |
|
|
echo "$line_0" | tee -a $SUMMARY |
976 |
|
|
echo "$line_1" | tee -a $SUMMARY |
977 |
|
|
echo "$line_2" | tee -a $SUMMARY |
978 |
|
|
echo "$line_3" | tee -a $SUMMARY |
979 |
|
|
echo "$line_4" | tee -a $SUMMARY |
980 |
|
|
echo " " | tee -a $SUMMARY |
981 |
edhill |
1.24 |
else |
982 |
|
|
echo "ADJOINT=true" >> $SUMMARY |
983 |
|
|
echo >> $SUMMARY |
984 |
|
|
cat << EOF | tee -a $SUMMARY |
985 |
|
|
G D M C G |
986 |
|
|
E p a R o r |
987 |
|
|
N n k u s a |
988 |
|
|
2 d e n t d |
989 |
|
|
|
990 |
|
|
EOF |
991 |
|
|
fi |
992 |
edhill |
1.1 |
|
993 |
edhill |
1.10 |
# ...and each test directory... |
994 |
|
|
for dir in $TESTDIRS ; do |
995 |
|
|
|
996 |
|
|
# Cleanup only! |
997 |
|
|
if test "x$CLEANUP" = xt ; then |
998 |
|
|
if test -r $dir/build/Makefile ; then |
999 |
jmc |
1.83 |
echo ' ------ clean dir:' $dir/build |
1000 |
edhill |
1.10 |
( cd $dir/build ; make CLEAN ) |
1001 |
|
|
fi |
1002 |
jmc |
1.83 |
if test -d $dir/run/CVS ; then |
1003 |
|
|
echo ' ------ clean dir:' $dir/run |
1004 |
|
|
run_clean $dir/run |
1005 |
edhill |
1.10 |
fi |
1006 |
edhill |
1.62 |
( |
1007 |
|
|
cd $dir |
1008 |
|
|
rm -rf tr_run.* |
1009 |
|
|
) |
1010 |
edhill |
1.10 |
continue |
1011 |
edhill |
1.1 |
fi |
1012 |
edhill |
1.3 |
|
1013 |
edhill |
1.10 |
# Verify that the testdir exists and contains previous |
1014 |
|
|
# results in the correct location--or skip this directory! |
1015 |
edhill |
1.24 |
fout= |
1016 |
|
|
if test "x$ADM" = x ; then |
1017 |
|
|
fout=$dir"/results/output.txt" |
1018 |
|
|
else |
1019 |
jmc |
1.78 |
fout=$dir"/results_ad/output_adm.txt" |
1020 |
edhill |
1.24 |
fi |
1021 |
|
|
if test ! -r $fout ; then |
1022 |
|
|
echo "can't read \"$fout\" -- skipping $dir" |
1023 |
edhill |
1.10 |
continue |
1024 |
|
|
fi |
1025 |
edhill |
1.53 |
if test "x$ADM" = x ; then |
1026 |
|
|
check_for_add_mon_output $fout |
1027 |
|
|
fi |
1028 |
edhill |
1.7 |
|
1029 |
edhill |
1.49 |
# Check for additional types of monitor output |
1030 |
|
|
|
1031 |
jmc |
1.83 |
builddir="build" |
1032 |
|
|
if test ! -d $dir/$builddir ; then mkdir $dir/$builddir ; fi |
1033 |
|
|
rundir="run" |
1034 |
|
|
#rundir=$builddir |
1035 |
|
|
if test ! -d $dir/$rundir ; then |
1036 |
|
|
rundir=$builddir |
1037 |
edhill |
1.10 |
fi |
1038 |
|
|
|
1039 |
edhill |
1.24 |
if test "x$ADM" = x ; then |
1040 |
edhill |
1.27 |
code_dir=code |
1041 |
edhill |
1.24 |
CODE_DIR=$dir/code |
1042 |
jmc |
1.83 |
input_dirs='input' |
1043 |
edhill |
1.24 |
else |
1044 |
edhill |
1.27 |
code_dir=code_ad |
1045 |
edhill |
1.24 |
CODE_DIR=$dir/code_ad |
1046 |
jmc |
1.83 |
input_dirs='input_ad input' |
1047 |
edhill |
1.24 |
fi |
1048 |
edhill |
1.10 |
BUILD_DIR=$dir/$builddir |
1049 |
edhill |
1.28 |
|
1050 |
edhill |
1.30 |
if test ! -r $CODE_DIR"/SIZE.h_mpi" -a "x$MPI" = "xt" ; then |
1051 |
edhill |
1.28 |
echo "can't find \"$CODE_DIR/SIZE.h_mpi\" -- skipping $dir" |
1052 |
|
|
continue |
1053 |
|
|
fi |
1054 |
jmc |
1.83 |
if test ! -r $dir"/input/eedata.mth" -a "x$MULTI_THREAD" = "xt" ; then |
1055 |
|
|
echo "can't find \"$dir/input/eedata.mth\" -- skipping $dir" |
1056 |
|
|
continue |
1057 |
|
|
fi |
1058 |
|
|
|
1059 |
|
|
# Check whether there are "extra runs" for this testdir |
1060 |
|
|
extra_runs= |
1061 |
|
|
if test "x$ADM" = x ; then |
1062 |
|
|
ex_run_dirs=`( cd $dir ; echo input.* )` |
1063 |
|
|
#echo "ex_run_dirs='$ex_run_dirs'" |
1064 |
|
|
for exd in $ex_run_dirs ; do |
1065 |
|
|
name=`echo $exd | sed -e 's/input.//g'` |
1066 |
jmc |
1.85 |
outf="$dir/results/output.$name.txt" |
1067 |
jmc |
1.83 |
if test -f $outf -a -r $outf ; then |
1068 |
|
|
if test "x$MULTI_THREAD" = "xt" ; then |
1069 |
|
|
if test -r $dir"/"$exd"/eedata.mth" ; then |
1070 |
|
|
extra_runs="$extra_runs $name" |
1071 |
|
|
#else echo $dir"/"$exd"/eedata.mth: not found" |
1072 |
|
|
fi |
1073 |
|
|
else |
1074 |
|
|
extra_runs="$extra_runs $name" |
1075 |
|
|
fi |
1076 |
|
|
fi |
1077 |
|
|
done |
1078 |
|
|
fi |
1079 |
edhill |
1.28 |
|
1080 |
|
|
echo "-------------------------------------------------------------------------------" |
1081 |
|
|
echo |
1082 |
jmc |
1.83 |
if test "x$extra_runs" = "x" ; then |
1083 |
|
|
echo "Experiment: $dir" |
1084 |
|
|
else |
1085 |
|
|
echo "Experiment: $dir ; extra_runs=$extra_runs" |
1086 |
|
|
fi |
1087 |
edhill |
1.28 |
echo |
1088 |
|
|
unset genmake makedepend make run |
1089 |
jmc |
1.73 |
results='-- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- --' |
1090 |
edhill |
1.10 |
|
1091 |
|
|
# Create an output dir for each OPTFILE/tdir combination |
1092 |
edhill |
1.20 |
rel_CDIR=$DRESULTS"/"$dir |
1093 |
|
|
mkdir $rel_CDIR |
1094 |
|
|
CDIR=`pwd`"/$rel_CDIR" |
1095 |
edhill |
1.10 |
|
1096 |
|
|
if test "x$CLEANUP" = xt ; then |
1097 |
jmc |
1.83 |
echo '====>>> this is to check that we never go through this part <<< ===' |
1098 |
|
|
makeclean $dir/$builddir \ |
1099 |
|
|
&& run_clean $dir/$rundir |
1100 |
edhill |
1.10 |
else |
1101 |
edhill |
1.1 |
genmakemodel $dir/$builddir && genmake=Y \ |
1102 |
|
|
&& makeclean $dir/$builddir \ |
1103 |
jmc |
1.83 |
&& run_clean $dir/$rundir \ |
1104 |
edhill |
1.27 |
&& symlink_mpifiles $dir $code_dir $builddir \ |
1105 |
edhill |
1.1 |
&& makedependmodel $dir/$builddir && makedepend=Y \ |
1106 |
|
|
&& makemodel $dir/$builddir && make=Y \ |
1107 |
jmc |
1.83 |
&& linkdata $dir/$rundir $input_dirs \ |
1108 |
edhill |
1.12 |
&& runmodel $dir/$rundir && run=Y \ |
1109 |
jmc |
1.85 |
&& results=`testoutput $dir $rundir "txt"` |
1110 |
edhill |
1.10 |
fi |
1111 |
|
|
|
1112 |
|
|
echo |
1113 |
edhill |
1.24 |
if test "x$ADM" = x ; then |
1114 |
|
|
fres=`formatresults $dir ${genmake:-N} ${makedepend:-N} ${make:-N} ${run:-N} $results` |
1115 |
edhill |
1.34 |
echo |
1116 |
|
|
echo "$fres" >> $SUMMARY |
1117 |
|
|
echo "fresults='$fres'" > $CDIR"/summary.txt" |
1118 |
|
|
echo "MACH='$MACH'" >> $CDIR"/summary.txt" |
1119 |
|
|
echo "UNAMEA='$UNAMEA'" >> $CDIR"/summary.txt" |
1120 |
|
|
echo "DATE='$DATE'" >> $CDIR"/summary.txt" |
1121 |
|
|
echo "tdir='$dir'" >> $CDIR"/summary.txt" |
1122 |
|
|
|
1123 |
|
|
for ex in $extra_runs ; do |
1124 |
jmc |
1.73 |
unset run |
1125 |
|
|
results='-- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- --' |
1126 |
|
|
# Create an output dir for each OPTFILE/tdir.ex combination |
1127 |
|
|
rel_CDIR=$DRESULTS"/"$dir"."$ex |
1128 |
|
|
mkdir $rel_CDIR |
1129 |
|
|
CDIR=`pwd`"/$rel_CDIR" |
1130 |
edhill |
1.61 |
test ! -e "$dir/tr_run.$ex" && mkdir "$dir/tr_run.$ex" |
1131 |
jmc |
1.83 |
run_clean $dir/tr_run.$ex |
1132 |
|
|
linkdata $dir/tr_run.$ex input.$ex input |
1133 |
jmc |
1.42 |
runmodel $dir/tr_run.$ex && run=Y \ |
1134 |
jmc |
1.85 |
&& results=`testoutput $dir tr_run.$ex ${ex}".txt"` |
1135 |
edhill |
1.34 |
fres=`printf '%s %s %s %s' ${genmake:-N} ${makedepend:-N} ${make:-N} ${run:-N}` |
1136 |
|
|
fres=`formatresults $dir ${genmake:-N} ${makedepend:-N} ${make:-N} ${run:-N} $results` |
1137 |
|
|
fres="$fres.$ex" |
1138 |
|
|
echo |
1139 |
|
|
echo "$fres" >> $SUMMARY |
1140 |
|
|
echo "fresults='$fres'" > $CDIR"/summary.txt" |
1141 |
|
|
echo "MACH='$MACH'" >> $CDIR"/summary.txt" |
1142 |
|
|
echo "UNAMEA='$UNAMEA'" >> $CDIR"/summary.txt" |
1143 |
|
|
echo "DATE='$DATE'" >> $CDIR"/summary.txt" |
1144 |
jmc |
1.73 |
echo "tdir='$dir.$ex'" >> $CDIR"/summary.txt" |
1145 |
jmc |
1.83 |
if test "x$POSTCLEAN" = xt ; then |
1146 |
|
|
run_clean $dir/tr_run.$ex |
1147 |
|
|
fi |
1148 |
edhill |
1.34 |
done |
1149 |
edhill |
1.24 |
else |
1150 |
|
|
fres=`printf '%s %s %s %s' ${genmake:-N} ${makedepend:-N} ${make:-N} ${run:-N}` |
1151 |
|
|
fres=$fres"$results $dir" |
1152 |
edhill |
1.34 |
echo |
1153 |
|
|
echo "$fres" >> $SUMMARY |
1154 |
|
|
echo "fresults='$fres'" > $CDIR"/summary.txt" |
1155 |
|
|
echo "MACH='$MACH'" >> $CDIR"/summary.txt" |
1156 |
|
|
echo "UNAMEA='$UNAMEA'" >> $CDIR"/summary.txt" |
1157 |
|
|
echo "DATE='$DATE'" >> $CDIR"/summary.txt" |
1158 |
|
|
echo "tdir='$dir'" >> $CDIR"/summary.txt" |
1159 |
jmc |
1.77 |
grep -A3 'Seconds in section "ALL' $dir/$rundir/$OUTPUTFILE \ |
1160 |
|
|
>> $CDIR"/summary.txt" |
1161 |
edhill |
1.24 |
fi |
1162 |
edhill |
1.68 |
|
1163 |
jmc |
1.83 |
#postclean $dir/$builddir |
1164 |
|
|
if test "x$POSTCLEAN" = xt ; then |
1165 |
|
|
makeclean $dir/$builddir \ |
1166 |
|
|
&& run_clean $dir/$rundir |
1167 |
|
|
fi |
1168 |
edhill |
1.10 |
|
1169 |
|
|
echo "-------------------------------------------------------------------------------" |
1170 |
|
|
|
1171 |
edhill |
1.1 |
done |
1172 |
|
|
|
1173 |
edhill |
1.34 |
printf "Start time: " >> $SUMMARY |
1174 |
edhill |
1.16 |
echo $start_date >> $SUMMARY |
1175 |
edhill |
1.34 |
printf "End time: " >> $SUMMARY |
1176 |
edhill |
1.13 |
date >> $SUMMARY |
1177 |
edhill |
1.20 |
|
1178 |
|
|
# If addresses were supplied and mpack built successfully, then try |
1179 |
|
|
# to send email using mpack. |
1180 |
|
|
if test "x$ADDRESSES" = xNONE -o "x$ADDRESSES" = x ; then |
1181 |
|
|
echo "No results email was sent." |
1182 |
|
|
else |
1183 |
|
|
if test "x$HAVE_MPACK" = xt ; then |
1184 |
|
|
tar -cf $DRESULTS".tar" $DRESULTS > /dev/null 2>&1 \ |
1185 |
|
|
&& gzip $DRESULTS".tar" \ |
1186 |
edhill |
1.44 |
&& $MPACK -s MITgcm-test -m 3555000 $DRESULTS".tar.gz" $ADDRESSES |
1187 |
edhill |
1.20 |
RETVAL=$? |
1188 |
|
|
if test "x$RETVAL" != x0 ; then |
1189 |
|
|
echo |
1190 |
|
|
echo "Warning: The tar, gzip, & mpack step failed. Please send email" |
1191 |
|
|
echo " to <MITgcm-support@mitgcm.org> for help. You may copy the " |
1192 |
|
|
echo " summary of results from the directory \"$DRESULTS\"." |
1193 |
|
|
echo |
1194 |
|
|
else |
1195 |
|
|
echo |
1196 |
|
|
echo "An email containing results was sent to the following addresses:" |
1197 |
|
|
echo " \"$ADDRESSES\"" |
1198 |
|
|
echo |
1199 |
|
|
fi |
1200 |
|
|
test -f $DRESULTS".tar" && rm -f $DRESULTS".tar" |
1201 |
|
|
test -f $DRESULTS".tar.gz" && rm -f $DRESULTS".tar.gz" |
1202 |
|
|
fi |
1203 |
|
|
fi |
1204 |
edhill |
1.13 |
|
1205 |
edhill |
1.22 |
# rm -f tmp_cmpnum.f a.out |
1206 |
|
|
rm -f tmp_cmpnum.c tmp_cmpnum |
1207 |
edhill |
1.1 |
|
1208 |
edhill |
1.12 |
if test "x$CLEANUP" != xt ; then |
1209 |
jmc |
1.65 |
cat $SUMMARY | sed 's/ -- -- -- --//g' |
1210 |
edhill |
1.25 |
if test -e tr_out.txt ; then |
1211 |
|
|
mv tr_out.txt tr_out.txt.old |
1212 |
edhill |
1.14 |
fi |
1213 |
jmc |
1.65 |
cat $SUMMARY | sed 's/ -- -- -- --//g' > tr_out.txt |
1214 |
edhill |
1.12 |
fi |
1215 |
edhill |
1.1 |
|
1216 |
edhill |
1.40 |
if test "x$DELDIR" = xt ; then |
1217 |
|
|
rm -rf $DRESULTS |
1218 |
|
|
fi |
1219 |
|
|
|