| 1 |
edhill |
1.19 |
#! /usr/bin/env bash |
| 2 |
edhill |
1.1 |
# |
| 3 |
jmc |
1.80 |
# $Header: /u/gcmpack/MITgcm/verification/testreport,v 1.79 2006/06/07 01:20:26 heimbach Exp $ |
| 4 |
edhill |
1.12 |
# $Name: $ |
| 5 |
edhill |
1.1 |
# |
| 6 |
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| 7 |
|
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usage() |
| 8 |
|
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{ |
| 9 |
|
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echo |
| 10 |
|
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echo "Usage: $0 [OPTIONS]" |
| 11 |
|
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echo |
| 12 |
|
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echo "where possible OPTIONS are:" |
| 13 |
|
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echo " (-help|-h) print usage" |
| 14 |
edhill |
1.7 |
echo " (-mpi) use MPI input files" |
| 15 |
edhill |
1.10 |
echo " (-ieee|-noieee) if possible, use IEEE compiler flags" |
| 16 |
edhill |
1.41 |
echo " (DEF=\"-ieee\")" |
| 17 |
edhill |
1.6 |
echo " (-optfile=|-of=)STRING list of optfiles to use" |
| 18 |
edhill |
1.20 |
echo " (-a|-addr) STRING list of email recipients" |
| 19 |
edhill |
1.6 |
echo " (DEF=\"edhill@mitgcm.org\")" |
| 20 |
edhill |
1.20 |
echo " (-t|-tdir) STRING list of test dirs to use" |
| 21 |
edhill |
1.6 |
echo " (DEF=\"\" which builds all)" |
| 22 |
edhill |
1.20 |
echo " (-b|-bash) STRING preferred location of a \"bash\" or" |
| 23 |
|
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echo " Bourne-compatible \"sh\" shell" |
| 24 |
|
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echo " (DEF=\"\" for \"bash\")" |
| 25 |
edhill |
1.24 |
echo " (-adm|-ad) perform an adjoint run" |
| 26 |
edhill |
1.20 |
echo " (-command) STRING command to run" |
| 27 |
edhill |
1.6 |
echo " (DEF=\"make output.txt\")" |
| 28 |
edhill |
1.20 |
echo " (-m|-make) STRING command to use for \"make\"" |
| 29 |
edhill |
1.8 |
echo " (DEF=\"make\")" |
| 30 |
jmc |
1.70 |
echo " (-odir) STRING used to build output directory name" |
| 31 |
|
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echo " (DEF=\"hostname\")" |
| 32 |
edhill |
1.50 |
echo " (-ptracers|-ptr) STRING specify which ptracers to test" |
| 33 |
|
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echo " (DEF=\"1 2 3 4 5\")" |
| 34 |
edhill |
1.43 |
echo " (-j) JOBS use \"make -j JOBS\" for parallel builds" |
| 35 |
edhill |
1.10 |
echo " (-clean) *ONLY* run \"make CLEAN\"" |
| 36 |
|
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echo " (-quick|-q) same as \"-nogenmake -noclean -nodepend\"" |
| 37 |
|
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echo " (-nogenmake|-ng) skip the genmake stage" |
| 38 |
|
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echo " (-noclean|-nc) skip the \"make clean\" stage" |
| 39 |
|
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echo " (-nodepend|-nd) skip the \"make depend\" stage" |
| 40 |
edhill |
1.40 |
echo " (-deldir|-dd) on success, delete the output directory" |
| 41 |
edhill |
1.6 |
echo |
| 42 |
edhill |
1.50 |
echo "and where STRING can be a whitespace-delimited list" |
| 43 |
edhill |
1.6 |
echo "such as:" |
| 44 |
edhill |
1.50 |
echo |
| 45 |
edhill |
1.6 |
echo " -t 'exp0 exp2 exp3' " |
| 46 |
|
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echo " -addr='abc@123.com testing@home.org'" |
| 47 |
edhill |
1.1 |
echo |
| 48 |
edhill |
1.50 |
echo "provided that the expression is properly quoted within the current" |
| 49 |
|
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echo "shell (note the use of single quotes to protect white space)." |
| 50 |
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echo |
| 51 |
edhill |
1.1 |
exit 1 |
| 52 |
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} |
| 53 |
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| 54 |
|
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# build the mpack utility |
| 55 |
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build_mpack() |
| 56 |
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{ |
| 57 |
edhill |
1.34 |
printf "building the mpack utility... " |
| 58 |
edhill |
1.1 |
if test ! -x "$MPACKDIR/mpack" ; then |
| 59 |
|
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if test ! -d $MPACKDIR ; then |
| 60 |
edhill |
1.20 |
echo |
| 61 |
edhill |
1.1 |
echo "Error: can't find \"$MPACKDIR\"" |
| 62 |
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echo " are you sure this program is being run in the correct " |
| 63 |
|
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echo " (that is, \"MITGCM_ROOT\verification\") directory?" |
| 64 |
edhill |
1.20 |
echo |
| 65 |
|
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HAVE_MPACK=f |
| 66 |
edhill |
1.1 |
fi |
| 67 |
edhill |
1.34 |
printf "building mpack... " |
| 68 |
edhill |
1.26 |
if test "x$CC" = x ; then |
| 69 |
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export CC=cc |
| 70 |
|
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fi |
| 71 |
edhill |
1.25 |
( cd $MPACKDIR && ./configure && $MAKE ) > tr_build_mpack.out 2>&1 |
| 72 |
edhill |
1.1 |
RETVAL=$? |
| 73 |
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if test "x$RETVAL" != x0 ; then |
| 74 |
|
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echo |
| 75 |
|
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echo "Error building the mpack tools at: $MPACK_DIR" |
| 76 |
edhill |
1.20 |
echo |
| 77 |
|
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HAVE_MPACK=f |
| 78 |
|
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else |
| 79 |
edhill |
1.25 |
rm -f tr_build_mpack.out |
| 80 |
edhill |
1.20 |
HAVE_MPACK=t |
| 81 |
edhill |
1.1 |
fi |
| 82 |
edhill |
1.20 |
else |
| 83 |
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HAVE_MPACK=t |
| 84 |
edhill |
1.1 |
fi |
| 85 |
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echo "OK" |
| 86 |
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} |
| 87 |
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| 88 |
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testoutput_for_prop() |
| 89 |
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{ |
| 90 |
edhill |
1.34 |
# testoutput_for_prop dir s1 label subdir extension |
| 91 |
edhill |
1.1 |
# |
| 92 |
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# compares files in $dir/$subdir/output.txt and $dir/results/output.txt |
| 93 |
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# using search strings s1 and text label |
| 94 |
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| 95 |
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if [ $debug -gt 0 ]; then |
| 96 |
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echo testoutput_for_prop: grep "$2" $1/$4/output.txt 1>&2 |
| 97 |
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fi |
| 98 |
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if [ -r $1/$4/output.txt ]; then |
| 99 |
edhill |
1.15 |
grep "$2" $1/$4/output.txt | sed 's/.*=//' | cat -n > tmp1.txt |
| 100 |
jmc |
1.67 |
lncntA=`wc -l tmp1.txt | awk '{print $1}' ` |
| 101 |
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if [ $lncntA -lt 3 ]; then |
| 102 |
edhill |
1.1 |
if [ $verbose -gt 0 ]; then |
| 103 |
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echo Not enough lines of output when searching for "$2" 1>&2 |
| 104 |
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fi |
| 105 |
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return 99 |
| 106 |
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fi |
| 107 |
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else |
| 108 |
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echo testoutput_for_prop: output.txt from model run was not readable 1>&2 |
| 109 |
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return 99 |
| 110 |
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fi |
| 111 |
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if [ $debug -gt 0 ]; then |
| 112 |
edhill |
1.34 |
echo testoutput_for_prop: grep "$2" $1/results/output.txt$5 1>&2 |
| 113 |
edhill |
1.1 |
fi |
| 114 |
edhill |
1.34 |
grep "$2" $1/results/output.txt$5 | sed 's/.*=//' | cat -n > tmp2.txt |
| 115 |
jmc |
1.67 |
lncntB=`wc -l tmp2.txt | awk '{print $1}' ` |
| 116 |
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if [ $lncntB -lt 3 ]; then |
| 117 |
edhill |
1.1 |
if [ $verbose -gt 0 ]; then |
| 118 |
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echo Not enough lines of output when searching for "$2" 1>&2 |
| 119 |
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fi |
| 120 |
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return 99 |
| 121 |
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fi |
| 122 |
jmc |
1.67 |
if [ $lncntA -ne $lncntB ]; then |
| 123 |
|
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if [ $verbose -gt 0 ]; then |
| 124 |
|
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echo Not same Nb of lines when searching for "$2" ":" $lncntA $lncntB 1>&2 |
| 125 |
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fi |
| 126 |
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return 99 |
| 127 |
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fi |
| 128 |
edhill |
1.72 |
has_nan=`cat tmp1.txt | grep -i nan | wc -l` |
| 129 |
|
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if [ $has_nan -gt 0 ] ; then |
| 130 |
|
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echo testoutput_for_prop: output.txt contains $has_nan NaN values 1>&2 |
| 131 |
|
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return 99 |
| 132 |
|
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fi |
| 133 |
|
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has_inf=`cat tmp1.txt | grep -i inf | wc -l` |
| 134 |
|
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if [ $has_inf -gt 0 ] ; then |
| 135 |
|
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echo testoutput_for_prop: output.txt contains $has_inf Inf values 1>&2 |
| 136 |
jmc |
1.71 |
return 99 |
| 137 |
|
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fi |
| 138 |
edhill |
1.1 |
if [ $debug -gt 0 ]; then |
| 139 |
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echo testoutput_for_prop: join tmp1.txt tmp2.txt 1>&2 |
| 140 |
|
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fi |
| 141 |
|
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join tmp1.txt tmp2.txt | awk '{print $1 " " $2 " " $3}' > tmp3.txt |
| 142 |
|
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if [ $debug -gt 0 ]; then |
| 143 |
|
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echo testoutput_for_prop: compare_lines 1>&2 |
| 144 |
|
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fi |
| 145 |
edhill |
1.22 |
if [ $verbose -gt 1 ]; then |
| 146 |
|
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cat tmp3.txt 1>&2 |
| 147 |
|
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fi |
| 148 |
|
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echo "-1" >> tmp3.txt |
| 149 |
edhill |
1.23 |
# On the SGI O3K (*not* the O2K), "cat -n" inserts a ":" after the line number |
| 150 |
|
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cat tmp3.txt | sed -e 's|:||g' > tmp4.txt |
| 151 |
|
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digits_of_similarity=`./tmp_cmpnum < tmp4.txt` |
| 152 |
edhill |
1.1 |
if [ $digits_of_similarity -eq 99 ]; then |
| 153 |
|
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if [ $verbose -gt 0 ]; then |
| 154 |
|
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echo testoutput_for_prop: No comparison was available for \"$2\" 1>&2 |
| 155 |
|
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fi |
| 156 |
|
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digits_of_similarity=99 |
| 157 |
|
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else |
| 158 |
|
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if [ $verbose -gt 0 ]; then |
| 159 |
|
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echo There were $digits_of_similarity decimal places of similarity for \"$2\" 1>&2 |
| 160 |
|
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fi |
| 161 |
|
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fi |
| 162 |
edhill |
1.23 |
rm -f tmp1.txt tmp2.txt tmp3.txt tmp4.txt |
| 163 |
edhill |
1.1 |
|
| 164 |
|
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return $digits_of_similarity |
| 165 |
|
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} |
| 166 |
|
|
|
| 167 |
|
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dashnum() |
| 168 |
|
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{ |
| 169 |
|
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# dashnum n1 n2 n3 ... |
| 170 |
|
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# |
| 171 |
|
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# print numbers using %3i format or "--" if number = 99 |
| 172 |
|
|
|
| 173 |
|
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for num in $@ ; do |
| 174 |
|
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if [ $num = 99 ]; then |
| 175 |
|
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printf ' --' |
| 176 |
|
|
else |
| 177 |
|
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printf '%3i' $num |
| 178 |
|
|
fi |
| 179 |
|
|
done |
| 180 |
|
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} |
| 181 |
|
|
|
| 182 |
edhill |
1.24 |
testoutput_ad() |
| 183 |
|
|
{ |
| 184 |
jmc |
1.78 |
grep $3 $1/results_ad/output_adm.txt | awk '{print NR " " $5}' > t05.txt |
| 185 |
|
|
grep $3 $1/$2/output_adm.txt | awk '{print NR " " $5}' > t15.txt |
| 186 |
|
|
grep $3 $1/results_ad/output_adm.txt | awk '{print NR " " $6}' > t06.txt |
| 187 |
|
|
grep $3 $1/$2/output_adm.txt | awk '{print NR " " $6}' > t16.txt |
| 188 |
edhill |
1.24 |
join t05.txt t15.txt > t5.txt |
| 189 |
|
|
join t06.txt t16.txt > t6.txt |
| 190 |
|
|
echo "-1" >> t5.txt |
| 191 |
|
|
echo "-1" >> t6.txt |
| 192 |
|
|
digits_5=`./tmp_cmpnum < t5.txt` |
| 193 |
|
|
digits_6=`./tmp_cmpnum < t6.txt` |
| 194 |
|
|
dashnum $digits_5 $digits_6 |
| 195 |
|
|
rm -f t[01][56].txt t[56].txt |
| 196 |
|
|
} |
| 197 |
|
|
|
| 198 |
edhill |
1.49 |
check_for_add_mon_output() |
| 199 |
|
|
{ |
| 200 |
|
|
# Check for additional types of monitor output |
| 201 |
|
|
if test "x$1" = x ; then |
| 202 |
|
|
return |
| 203 |
|
|
fi |
| 204 |
|
|
|
| 205 |
edhill |
1.50 |
for ii in $PTRACERS_NUM ; do |
| 206 |
|
|
eval "HAVE_PTR0"$ii"=f" |
| 207 |
|
|
done |
| 208 |
|
|
|
| 209 |
edhill |
1.49 |
ptr_add="trcstat_ptracerXX_min trcstat_ptracerXX_max" |
| 210 |
|
|
ptr_add="$ptr_add trcstat_ptracerXX_mean trcstat_ptracerXX_sd" |
| 211 |
edhill |
1.50 |
for ii in $PTRACERS_NUM ; do |
| 212 |
edhill |
1.49 |
for jj in $ptr_add ; do |
| 213 |
|
|
name=`eval "echo $jj | sed -e 's|XX|0"$ii"|g'"` |
| 214 |
|
|
tst=`grep $name $1 | wc -l | awk '{print $1}'` |
| 215 |
|
|
if test ! "x$tst" = x0 ; then |
| 216 |
|
|
eval "HAVE_PTR0"$ii"=t" |
| 217 |
|
|
fi |
| 218 |
|
|
done |
| 219 |
|
|
# eval 'echo "HAVE_PTR0'$ii' = $HAVE_PTR0'$ii'"' |
| 220 |
|
|
done |
| 221 |
|
|
} |
| 222 |
|
|
|
| 223 |
edhill |
1.1 |
testoutput() |
| 224 |
|
|
{ |
| 225 |
edhill |
1.34 |
# testoutput directory subdir extension |
| 226 |
edhill |
1.1 |
# |
| 227 |
|
|
# test output in "directory" |
| 228 |
edhill |
1.24 |
if test "x$ADM" = x ; then |
| 229 |
|
|
if [ $debug -gt 0 ]; then |
| 230 |
|
|
echo testoutput: testoutput_for_prop $1 cg2d_init_res 1>&2 |
| 231 |
|
|
fi |
| 232 |
edhill |
1.34 |
testoutput_for_prop $1 "cg2d_init_res" "cg2d init. residual" $2 $3; cg2dres=$? |
| 233 |
edhill |
1.24 |
if [ $debug -gt 0 ]; then |
| 234 |
|
|
echo testoutput: cg2dres=$cg2dres 1>&2 |
| 235 |
|
|
fi |
| 236 |
edhill |
1.34 |
testoutput_for_prop $1 "dynstat_theta_min" "theta minimum" $2 $3; tmin=$? |
| 237 |
|
|
testoutput_for_prop $1 "dynstat_theta_max" "theta maximum" $2 $3; tmax=$? |
| 238 |
|
|
testoutput_for_prop $1 "dynstat_theta_mean" "theta mean" $2 $3; tmean=$? |
| 239 |
|
|
testoutput_for_prop $1 "dynstat_theta_sd" "theta s.d." $2 $3; tsd=$? |
| 240 |
|
|
testoutput_for_prop $1 "dynstat_salt_min" "salt minimum" $2 $3; smin=$? |
| 241 |
|
|
testoutput_for_prop $1 "dynstat_salt_max" "salt maximum" $2 $3; smax=$? |
| 242 |
|
|
testoutput_for_prop $1 "dynstat_salt_mean" "salt mean" $2 $3; smean=$? |
| 243 |
|
|
testoutput_for_prop $1 "dynstat_salt_sd" "salt s.d." $2 $3; ssd=$? |
| 244 |
|
|
testoutput_for_prop $1 "dynstat_uvel_min" "U minimum" $2 $3; umin=$? |
| 245 |
|
|
testoutput_for_prop $1 "dynstat_uvel_max" "U maximum" $2 $3; umax=$? |
| 246 |
|
|
testoutput_for_prop $1 "dynstat_uvel_mean" "U mean" $2 $3; umean=$? |
| 247 |
|
|
testoutput_for_prop $1 "dynstat_uvel_sd" "U s.d." $2 $3; usd=$? |
| 248 |
|
|
testoutput_for_prop $1 "dynstat_vvel_min" "V minimum" $2 $3; vmin=$? |
| 249 |
|
|
testoutput_for_prop $1 "dynstat_vvel_max" "V maximum" $2 $3; vmax=$? |
| 250 |
|
|
testoutput_for_prop $1 "dynstat_vvel_mean" "V mean" $2 $3; vmean=$? |
| 251 |
|
|
testoutput_for_prop $1 "dynstat_vvel_sd" "V s.d." $2 $3; vsd=$? |
| 252 |
edhill |
1.49 |
|
| 253 |
edhill |
1.50 |
# This is for PTRACERS |
| 254 |
|
|
for ii in $PTRACERS_NUM ; do |
| 255 |
|
|
eval `echo "p0"$ii"_min=99"` |
| 256 |
|
|
eval `echo "p0"$ii"_max=99"` |
| 257 |
|
|
eval `echo "p0"$ii"_mean=99"` |
| 258 |
|
|
eval `echo "p0"$ii"_sd=99"` |
| 259 |
|
|
tst=`eval 'echo "$HAVE_PTR0'$ii'"'` |
| 260 |
|
|
#echo 'tst = '$tst |
| 261 |
|
|
if test "x$tst" = xt ; then |
| 262 |
|
|
a="trcstat_ptracer0" |
| 263 |
|
|
testoutput_for_prop $1 "$a"$ii"_min" "p0"$ii"_min" $2 $3 |
| 264 |
|
|
RETVAL=$? ; eval `echo "p0"$ii"_min="$RETVAL` |
| 265 |
|
|
testoutput_for_prop $1 "$a"$ii"_max" "p0"$ii"_max" $2 $3 |
| 266 |
|
|
RETVAL=$? ; eval `echo "p0"$ii"_max="$RETVAL` |
| 267 |
|
|
testoutput_for_prop $1 "$a"$ii"_mean" "p0"$ii"_mean" $2 $3 |
| 268 |
|
|
RETVAL=$? ; eval `echo "p0"$ii"_mean="$RETVAL` |
| 269 |
|
|
testoutput_for_prop $1 "$a"$ii"_sd" "p0"$ii"_sd" $2 $3 |
| 270 |
|
|
RETVAL=$? ; eval `echo "p0"$ii"_sd="$RETVAL` |
| 271 |
|
|
fi |
| 272 |
edhill |
1.49 |
done |
| 273 |
|
|
|
| 274 |
|
|
allargs="$cg2dres $tmin $tmax $tmean $tsd $smin $smax $smean $ssd" |
| 275 |
|
|
allargs="$allargs $umin $umax $umean $usd $vmin $vmax $vmean $vsd" |
| 276 |
|
|
allargs="$allargs $p01_min $p01_max $p01_mean $p01_sd" |
| 277 |
|
|
allargs="$allargs $p02_min $p02_max $p02_mean $p02_sd" |
| 278 |
|
|
allargs="$allargs $p03_min $p03_max $p03_mean $p03_sd" |
| 279 |
|
|
allargs="$allargs $p04_min $p04_max $p04_mean $p04_sd" |
| 280 |
|
|
allargs="$allargs $p05_min $p05_max $p05_mean $p05_sd" |
| 281 |
|
|
|
| 282 |
|
|
eval "dashnum $allargs" |
| 283 |
|
|
|
| 284 |
edhill |
1.24 |
else |
| 285 |
|
|
testoutput_ad $1 $2 "precision_grdchk_result" |
| 286 |
edhill |
1.1 |
fi |
| 287 |
|
|
} |
| 288 |
|
|
|
| 289 |
|
|
genmakemodel() |
| 290 |
|
|
{ |
| 291 |
|
|
# genmakemodel directory |
| 292 |
edhill |
1.10 |
if test "x$NOGENMAKE" = xt ; then |
| 293 |
|
|
echo "genmake skipped!" |
| 294 |
|
|
else |
| 295 |
edhill |
1.34 |
if test "x$BASH" = x ; then |
| 296 |
|
|
GENMAKE2="../../../tools/genmake2" |
| 297 |
|
|
else |
| 298 |
|
|
GENMAKE2="$BASH ../../../tools/genmake2 -bash $BASH" |
| 299 |
|
|
fi |
| 300 |
edhill |
1.10 |
( |
| 301 |
|
|
cd $1; |
| 302 |
edhill |
1.24 |
command="$GENMAKE2 -ds -m $MAKE" |
| 303 |
|
|
if test "x$ADM" = x ; then |
| 304 |
|
|
command="$command --mods=../code" |
| 305 |
|
|
else |
| 306 |
|
|
command="$command --mods=../code_ad" |
| 307 |
|
|
fi |
| 308 |
edhill |
1.10 |
if test "x$OPTFILE" != xNONE ; then |
| 309 |
|
|
command="$command --optfile=$OPTFILE" |
| 310 |
|
|
fi |
| 311 |
|
|
if test "x$IEEE" != x ; then |
| 312 |
|
|
command="$command -ieee" |
| 313 |
|
|
fi |
| 314 |
edhill |
1.66 |
if test "x$MPI" = xt ; then |
| 315 |
|
|
command="$command -mpi" |
| 316 |
|
|
fi |
| 317 |
edhill |
1.10 |
printf 'genmake ... ' 1>&2 |
| 318 |
|
|
$command > make.log 2>&1 |
| 319 |
|
|
RETVAL=$? |
| 320 |
edhill |
1.44 |
# Reduce the size of the testing emails! |
| 321 |
edhill |
1.47 |
head -100 Makefile > $CDIR/Makefile_head |
| 322 |
edhill |
1.10 |
if test "x$RETVAL" != x0 ; then |
| 323 |
|
|
tail make.log |
| 324 |
|
|
echo "genmakemodel: genmake failed" 1>&2 |
| 325 |
edhill |
1.21 |
cp genmake_* make.log $CDIR |
| 326 |
edhill |
1.10 |
return 1 |
| 327 |
|
|
else |
| 328 |
edhill |
1.20 |
echo "successful" 1>&2 |
| 329 |
edhill |
1.1 |
fi |
| 330 |
edhill |
1.10 |
) |
| 331 |
|
|
fi |
| 332 |
edhill |
1.1 |
} |
| 333 |
|
|
|
| 334 |
|
|
makeclean() |
| 335 |
|
|
{ |
| 336 |
|
|
# makeclean directory |
| 337 |
edhill |
1.10 |
if test "x$NOCLEAN" = xt ; then |
| 338 |
|
|
echo "make CLEAN skipped!" |
| 339 |
|
|
else |
| 340 |
|
|
( |
| 341 |
|
|
cd $1; |
| 342 |
|
|
if test -e output.txt ; then |
| 343 |
|
|
rm -f output.txt |
| 344 |
|
|
fi |
| 345 |
|
|
printf 'make CLEAN ... ' 2>&1 |
| 346 |
|
|
if test -r Makefile ; then |
| 347 |
|
|
$MAKE CLEAN >> make.log 2>&1 |
| 348 |
|
|
RETVAL=$? |
| 349 |
|
|
if test "x$RETVAL" != x0 ; then |
| 350 |
|
|
tail make.log |
| 351 |
|
|
echo "makeclean: \"make CLEAN\" failed" 1>&2 |
| 352 |
|
|
cp make.log $CDIR"/make.log" |
| 353 |
|
|
return 1 |
| 354 |
|
|
fi |
| 355 |
|
|
fi |
| 356 |
edhill |
1.20 |
echo successful 1>&2 |
| 357 |
edhill |
1.10 |
exit 0 |
| 358 |
|
|
) |
| 359 |
|
|
fi |
| 360 |
|
|
} |
| 361 |
|
|
|
| 362 |
edhill |
1.68 |
postclean() |
| 363 |
|
|
{ |
| 364 |
|
|
# postclean directory |
| 365 |
|
|
if test "x$POSTCLEAN" = xt ; then |
| 366 |
|
|
( |
| 367 |
|
|
cd $1; |
| 368 |
|
|
if test -r Makefile ; then |
| 369 |
|
|
$MAKE CLEAN >> /dev/null 2>&1 |
| 370 |
|
|
fi |
| 371 |
|
|
exit 0 |
| 372 |
|
|
) |
| 373 |
|
|
fi |
| 374 |
|
|
} |
| 375 |
|
|
|
| 376 |
edhill |
1.10 |
makedependmodel() |
| 377 |
|
|
{ |
| 378 |
|
|
# makedependmodel directory |
| 379 |
|
|
if test "x$NODEPEND" = xt ; then |
| 380 |
|
|
echo "make depend skipped!" |
| 381 |
|
|
else |
| 382 |
|
|
( |
| 383 |
|
|
cd $1; |
| 384 |
|
|
printf 'make depend ... ' 1>&2 |
| 385 |
|
|
$MAKE depend >> make.log 2>&1 |
| 386 |
edhill |
1.1 |
RETVAL=$? |
| 387 |
|
|
if test "x$RETVAL" != x0 ; then |
| 388 |
|
|
tail make.log |
| 389 |
edhill |
1.10 |
echo "makedependmodel: make depend failed" 1>&2 |
| 390 |
edhill |
1.1 |
cp make.log $CDIR"/make.log" |
| 391 |
|
|
return 1 |
| 392 |
edhill |
1.10 |
else |
| 393 |
edhill |
1.20 |
echo successful 1>&2 |
| 394 |
edhill |
1.1 |
fi |
| 395 |
edhill |
1.10 |
) |
| 396 |
|
|
fi |
| 397 |
edhill |
1.1 |
} |
| 398 |
|
|
|
| 399 |
|
|
makemodel() |
| 400 |
|
|
{ |
| 401 |
|
|
# makemodel directory |
| 402 |
|
|
( |
| 403 |
|
|
cd $1; |
| 404 |
|
|
if test -r Makefile ; then |
| 405 |
|
|
printf 'make ... ' 1>&2 |
| 406 |
edhill |
1.24 |
if test "x$ADM" = x ; then |
| 407 |
edhill |
1.43 |
if test "x$JOBS" = x ; then |
| 408 |
|
|
$MAKE >> make.log 2>&1 |
| 409 |
|
|
else |
| 410 |
|
|
$MAKE -j $JOBS >> make.log 2>&1 |
| 411 |
|
|
fi |
| 412 |
edhill |
1.24 |
else |
| 413 |
|
|
$MAKE adall >> make.log 2>&1 |
| 414 |
|
|
fi |
| 415 |
edhill |
1.1 |
RETVAL=$? |
| 416 |
|
|
if test "x$RETVAL" != x0 ; then |
| 417 |
|
|
tail make.log |
| 418 |
|
|
echo failed 1>&2 |
| 419 |
|
|
cp make.log $CDIR"/make.log" |
| 420 |
|
|
return 1 |
| 421 |
|
|
else |
| 422 |
edhill |
1.20 |
echo successful 1>&2 |
| 423 |
edhill |
1.1 |
fi |
| 424 |
|
|
fi |
| 425 |
|
|
) |
| 426 |
|
|
} |
| 427 |
|
|
|
| 428 |
edhill |
1.27 |
symlink_mpifiles() |
| 429 |
|
|
{ |
| 430 |
|
|
# Put special links so that MPI specific files are used |
| 431 |
|
|
# This MUST be invoked between makeclean and makelinks because |
| 432 |
|
|
# the Makefile will link to non-mpi files by default |
| 433 |
|
|
|
| 434 |
|
|
dir=$1 |
| 435 |
|
|
code_dir=$2 |
| 436 |
|
|
BUILD_DIR=$dir/$3 |
| 437 |
|
|
CODE_DIR=$dir/$code_dir |
| 438 |
edhill |
1.45 |
|
| 439 |
edhill |
1.27 |
# These are files that should replace their counter-part when using -mpi |
| 440 |
|
|
MPI_FILES=`(cd $CODE_DIR; find . -name "*_mpi")` |
| 441 |
|
|
|
| 442 |
|
|
# Is this an MPI run? |
| 443 |
|
|
if test "x$MPI" = xt ; then |
| 444 |
|
|
# YES: We symbolically link these files to the build |
| 445 |
|
|
# dir so long as there is no real file in place |
| 446 |
|
|
for ii in $MPI_FILES ; do |
| 447 |
|
|
i=`echo $ii | sed 's:^\./::'` |
| 448 |
|
|
name=`echo $i | sed 's:_mpi::' ` |
| 449 |
|
|
cmp $CODE_DIR/$i $BUILD_DIR/$name > /dev/null 2>&1 |
| 450 |
|
|
RETVAL=$? |
| 451 |
|
|
if test "x$RETVAL" != x0 ; then |
| 452 |
|
|
if ! test -f $BUILD_DIR/$i ; then |
| 453 |
edhill |
1.45 |
#echo Linking $name to $i |
| 454 |
edhill |
1.27 |
(cd $BUILD_DIR; ln -sf ../$code_dir/$i $name) |
| 455 |
|
|
fi |
| 456 |
|
|
fi |
| 457 |
|
|
done |
| 458 |
|
|
else |
| 459 |
edhill |
1.45 |
# NO: We undo any _mpi symbolically linked files |
| 460 |
edhill |
1.27 |
for ii in $MPI_FILES ; do |
| 461 |
|
|
i=`echo $ii | sed 's:^\./::'` |
| 462 |
|
|
name=`echo $i | sed 's:_mpi::' ` |
| 463 |
|
|
if test -L $BUILD_DIR/$name ; then |
| 464 |
edhill |
1.45 |
cmp $BUILD_DIR/$name "../$code_dir/$name"_mpi > /dev/null 2>&1 |
| 465 |
|
|
RETVAL=$? |
| 466 |
|
|
if test "x$RETVAL" = x0 ; then |
| 467 |
|
|
#echo Un-linking $name from $linktarg |
| 468 |
edhill |
1.27 |
rm -f $BUILD_DIR/$name |
| 469 |
|
|
fi |
| 470 |
|
|
fi |
| 471 |
|
|
done |
| 472 |
|
|
fi |
| 473 |
|
|
|
| 474 |
|
|
} |
| 475 |
|
|
|
| 476 |
edhill |
1.1 |
linkdata() |
| 477 |
|
|
{ |
| 478 |
|
|
# linkdata flag |
| 479 |
|
|
# |
| 480 |
|
|
# symbolically link data files to run directory |
| 481 |
edhill |
1.12 |
if test "x$1" = x1 ; then |
| 482 |
|
|
( |
| 483 |
|
|
cd $2 |
| 484 |
edhill |
1.24 |
if test "x$ADM" = x ; then |
| 485 |
|
|
files=`( cd ../input ; ls -1 | grep -v CVS )` |
| 486 |
|
|
for i in $files ; do |
| 487 |
edhill |
1.60 |
if test ! -d "../input/"$i -a ! -f $i ; then |
| 488 |
edhill |
1.24 |
ln -sf "../input/"$i $i |
| 489 |
|
|
fi |
| 490 |
|
|
done |
| 491 |
|
|
else |
| 492 |
jmc |
1.80 |
files=`( cd ../input_ad ; ls -1 | grep -v CVS )` |
| 493 |
edhill |
1.24 |
for i in $files ; do |
| 494 |
jmc |
1.80 |
if test ! -d "../input_ad/"$i ; then |
| 495 |
|
|
ln -sf "../input_ad/"$i $i |
| 496 |
edhill |
1.24 |
fi |
| 497 |
|
|
done |
| 498 |
jmc |
1.80 |
files=`( cd ../input ; ls -1 | grep -v CVS )` |
| 499 |
edhill |
1.24 |
for i in $files ; do |
| 500 |
jmc |
1.80 |
if test ! -d "../input/"$i ; then |
| 501 |
|
|
if test ! -r $i ; then |
| 502 |
|
|
ln -sf "../input/"$i $i |
| 503 |
|
|
fi |
| 504 |
edhill |
1.24 |
fi |
| 505 |
|
|
done |
| 506 |
|
|
fi |
| 507 |
edhill |
1.12 |
) |
| 508 |
edhill |
1.1 |
fi |
| 509 |
|
|
} |
| 510 |
|
|
|
| 511 |
|
|
runmodel() |
| 512 |
|
|
{ |
| 513 |
edhill |
1.6 |
# runmodel directory |
| 514 |
edhill |
1.1 |
# |
| 515 |
edhill |
1.24 |
# runs "$COMMAND in "directory" |
| 516 |
edhill |
1.6 |
# (where "$COMMAND" is relative to "directory") |
| 517 |
edhill |
1.1 |
( |
| 518 |
|
|
cd $1 |
| 519 |
jmc |
1.75 |
printf 'runmodel in %s ...' $1 1>&2 |
| 520 |
edhill |
1.6 |
# make output.txt |
| 521 |
edhill |
1.38 |
echo |
| 522 |
jmc |
1.46 |
rm -f run.log |
| 523 |
jmc |
1.76 |
if test $OUTPUTFILE -ot $EXECUTABLE ; then |
| 524 |
jmc |
1.75 |
( eval $COMMAND ) > run.log 2>&1 |
| 525 |
|
|
RETVAL=$? |
| 526 |
|
|
else |
| 527 |
jmc |
1.76 |
echo " $OUTPUTFILE is up to date " > run.log 2>&1 |
| 528 |
jmc |
1.75 |
RETVAL=0 |
| 529 |
|
|
fi |
| 530 |
edhill |
1.39 |
# echo "COMMAND='$COMMAND'" |
| 531 |
|
|
# echo "pwd='"`pwd`"'" |
| 532 |
edhill |
1.6 |
if test "x$RETVAL" = x0 ; then |
| 533 |
jmc |
1.46 |
tail run.log |
| 534 |
edhill |
1.20 |
echo successful 1>&2 |
| 535 |
edhill |
1.44 |
# === Reduce the size of the testing emails! |
| 536 |
|
|
# if test "x$ADM" = x ; then |
| 537 |
|
|
# cp output.txt $CDIR"/output.txt" |
| 538 |
|
|
# else |
| 539 |
jmc |
1.78 |
# cp output_adm.txt $CDIR"/output_adm.txt" |
| 540 |
edhill |
1.44 |
# fi |
| 541 |
jmc |
1.48 |
if test -s STDERR.0000 ; then cp STDERR.0000 $CDIR"/STDERR.0000" ; fi |
| 542 |
edhill |
1.6 |
return 0 |
| 543 |
|
|
else |
| 544 |
edhill |
1.20 |
tail run.log |
| 545 |
|
|
echo failed 1>&2 |
| 546 |
|
|
cp run.log $CDIR"/run.log" |
| 547 |
jmc |
1.48 |
if test -s STDERR.0000 ; then cp STDERR.0000 $CDIR"/STDERR.0000" ; fi |
| 548 |
edhill |
1.6 |
return 1 |
| 549 |
edhill |
1.1 |
fi |
| 550 |
|
|
) |
| 551 |
|
|
} |
| 552 |
|
|
|
| 553 |
|
|
createcodelet() |
| 554 |
|
|
{ |
| 555 |
|
|
# create codelet for comparing model output |
| 556 |
|
|
|
| 557 |
edhill |
1.34 |
printf "creating the comparison code... " |
| 558 |
edhill |
1.22 |
cat > tmp_cmpnum.c <<EOF |
| 559 |
|
|
#include <stdio.h> |
| 560 |
|
|
#include <math.h> |
| 561 |
|
|
int main( int argc, char** argv ) { |
| 562 |
adcroft |
1.33 |
int linnum,best,lncnt; |
| 563 |
edhill |
1.52 |
double a,b,abave,relerr; |
| 564 |
jmc |
1.57 |
best = -22; |
| 565 |
adcroft |
1.33 |
lncnt = 0; |
| 566 |
|
|
while( 1 & (lncnt+=1) < 999 ) { |
| 567 |
edhill |
1.22 |
scanf("%d", &linnum); |
| 568 |
|
|
if (linnum == -1) break; |
| 569 |
|
|
scanf("%lf", &a); scanf("%lf", &b); |
| 570 |
edhill |
1.52 |
abave = 0.5*(fabs(a)+fabs(b)); |
| 571 |
|
|
if (abave > 0.0) { |
| 572 |
|
|
relerr=fabs(a-b)/abave; |
| 573 |
edhill |
1.64 |
if (relerr > 0.0) { linnum = (int)rint(log10(relerr)); } |
| 574 |
jmc |
1.57 |
else { linnum = -16 ; } |
| 575 |
|
|
best = (best > linnum) ? best : linnum; |
| 576 |
edhill |
1.22 |
} |
| 577 |
|
|
} |
| 578 |
adcroft |
1.33 |
if (lncnt == 999) best=-29; |
| 579 |
edhill |
1.22 |
printf("%d\n", -best); |
| 580 |
|
|
return 0; |
| 581 |
|
|
} |
| 582 |
|
|
EOF |
| 583 |
edhill |
1.58 |
$CC -o tmp_cmpnum tmp_cmpnum.c -lm |
| 584 |
edhill |
1.1 |
|
| 585 |
edhill |
1.22 |
if [ -x ./tmp_cmpnum ]; then |
| 586 |
edhill |
1.1 |
echo "OK" |
| 587 |
|
|
return 0 |
| 588 |
|
|
else |
| 589 |
|
|
echo |
| 590 |
edhill |
1.58 |
echo "ERROR: failed to compile comparison code -- please specify" |
| 591 |
|
|
echo " a C compiler using the CC environment variable." |
| 592 |
edhill |
1.1 |
exit 1 |
| 593 |
|
|
fi |
| 594 |
|
|
} |
| 595 |
|
|
|
| 596 |
|
|
formatresults() |
| 597 |
|
|
{ |
| 598 |
|
|
# formatresults expt genmake depend make run results* |
| 599 |
|
|
|
| 600 |
|
|
nm=$1 |
| 601 |
|
|
printf '%s %s %s %s' $2 $3 $4 $5 |
| 602 |
|
|
shift; shift; shift; shift; shift; |
| 603 |
|
|
printf '%3s' $@ |
| 604 |
|
|
|
| 605 |
|
|
if [ $1 = '--' ]; then |
| 606 |
|
|
printf ' N/O ' |
| 607 |
|
|
else |
| 608 |
|
|
if [ $1 -gt 12 ]; then |
| 609 |
|
|
printf ' pass' |
| 610 |
|
|
else |
| 611 |
|
|
printf ' FAIL' |
| 612 |
|
|
fi |
| 613 |
|
|
fi |
| 614 |
|
|
printf ' %s' $nm |
| 615 |
|
|
printf '\n' |
| 616 |
|
|
|
| 617 |
|
|
} |
| 618 |
|
|
|
| 619 |
|
|
show_help() |
| 620 |
|
|
{ |
| 621 |
|
|
cat - << EOF |
| 622 |
|
|
$0 [-help] [-quick] [-verbose] dir1 [dir2] [...] |
| 623 |
edhill |
1.10 |
|
| 624 |
|
|
-help|-h Show this help message |
| 625 |
edhill |
1.1 |
-quiet Reduce the amount of output |
| 626 |
|
|
-verbose Produce copious amounts of output |
| 627 |
|
|
-debug Produce even more output which will mean nothing to most |
| 628 |
|
|
-force Do "make CLEAN" before compiling. This forces a complete rebuild. |
| 629 |
|
|
-clean Do "make CLEAN" after compiling and testing. |
| 630 |
|
|
-cleanup Aggresively removes all model output, executables and object files |
| 631 |
|
|
and then exits. Use with care. |
| 632 |
|
|
|
| 633 |
|
|
Normal usage: |
| 634 |
|
|
$0 * Configure, compile, run and analyze in all experiment directories |
| 635 |
|
|
EOF |
| 636 |
|
|
} |
| 637 |
|
|
|
| 638 |
|
|
scandirs() |
| 639 |
|
|
{ |
| 640 |
|
|
if [ $# -eq 0 ]; then |
| 641 |
|
|
for arg in * ; do |
| 642 |
|
|
test -d $arg/input && echo $arg |
| 643 |
|
|
done |
| 644 |
|
|
else |
| 645 |
|
|
echo $* |
| 646 |
|
|
fi |
| 647 |
|
|
} |
| 648 |
|
|
|
| 649 |
|
|
|
| 650 |
|
|
############################################################################### |
| 651 |
|
|
|
| 652 |
|
|
|
| 653 |
|
|
# Default properties |
| 654 |
|
|
debug=0 |
| 655 |
|
|
verbose=1 |
| 656 |
|
|
clean=0 |
| 657 |
|
|
expts='' |
| 658 |
edhill |
1.6 |
# ieee=1 |
| 659 |
edhill |
1.10 |
|
| 660 |
edhill |
1.40 |
IEEE=true |
| 661 |
edhill |
1.10 |
if test "x$MITGCM_IEEE" != x ; then |
| 662 |
|
|
IEEE=$MITGCM_IEEE |
| 663 |
|
|
fi |
| 664 |
|
|
|
| 665 |
|
|
|
| 666 |
|
|
CLEANUP=f |
| 667 |
|
|
QUICK=f |
| 668 |
|
|
NOGENMAKE=f |
| 669 |
|
|
NOCLEAN=f |
| 670 |
|
|
NODEPEND=f |
| 671 |
edhill |
1.68 |
POSTCLEAN=f |
| 672 |
edhill |
1.1 |
|
| 673 |
edhill |
1.4 |
BASH= |
| 674 |
edhill |
1.10 |
OPTFILE=NONE |
| 675 |
|
|
ADDRESSES= |
| 676 |
edhill |
1.1 |
TESTDIRS= |
| 677 |
|
|
MPACKDIR="../tools/mpack-1.6" |
| 678 |
edhill |
1.20 |
HAVE_MPACK= |
| 679 |
edhill |
1.1 |
MPACK="$MPACKDIR/mpack" |
| 680 |
edhill |
1.24 |
COMMAND= |
| 681 |
edhill |
1.59 |
if test "x$MAKE" = x ; then |
| 682 |
|
|
MAKE=make |
| 683 |
|
|
fi |
| 684 |
|
|
if test "x$CC" = x ; then |
| 685 |
|
|
CC=cc |
| 686 |
|
|
fi |
| 687 |
edhill |
1.43 |
JOBS= |
| 688 |
edhill |
1.7 |
MPI=f |
| 689 |
jmc |
1.70 |
OUTDIR= |
| 690 |
edhill |
1.40 |
DELDIR= |
| 691 |
edhill |
1.1 |
|
| 692 |
edhill |
1.24 |
ADM= |
| 693 |
|
|
|
| 694 |
edhill |
1.49 |
# Additional monitor types |
| 695 |
edhill |
1.50 |
PTRACERS_NUM="1 2 3 4 5" |
| 696 |
edhill |
1.49 |
|
| 697 |
edhill |
1.34 |
printf "parsing options... " |
| 698 |
edhill |
1.1 |
|
| 699 |
|
|
ac_prev= |
| 700 |
|
|
for ac_option ; do |
| 701 |
|
|
|
| 702 |
|
|
# If the previous option needs an argument, assign it. |
| 703 |
|
|
if test -n "$ac_prev"; then |
| 704 |
|
|
eval "$ac_prev=\$ac_option" |
| 705 |
|
|
ac_prev= |
| 706 |
|
|
continue |
| 707 |
|
|
fi |
| 708 |
|
|
|
| 709 |
|
|
ac_optarg=`expr "x$ac_option" : 'x[^=]*=\(.*\)'` |
| 710 |
|
|
|
| 711 |
|
|
case $ac_option in |
| 712 |
|
|
|
| 713 |
|
|
-help | --help | -h | --h) |
| 714 |
|
|
usage ;; |
| 715 |
|
|
|
| 716 |
edhill |
1.2 |
-optfile | --optfile | -of | --of) |
| 717 |
edhill |
1.10 |
ac_prev=OPTFILE ;; |
| 718 |
edhill |
1.2 |
-optfile=* | --optfile=* | -of=* | --of=*) |
| 719 |
edhill |
1.10 |
OPTFILE=$ac_optarg ;; |
| 720 |
edhill |
1.1 |
|
| 721 |
|
|
-addr | --addr | -a | --a) |
| 722 |
|
|
ac_prev=ADDRESSES ;; |
| 723 |
|
|
-addr=* | --addr=*) |
| 724 |
|
|
ADDRESSES=$ac_optarg ;; |
| 725 |
|
|
|
| 726 |
|
|
-tdir | --tdir | -t | --t) |
| 727 |
|
|
ac_prev=TESTDIRS ;; |
| 728 |
|
|
-tdir=* | --tdir=*) |
| 729 |
|
|
TESTDIRS=$ac_optarg ;; |
| 730 |
edhill |
1.4 |
|
| 731 |
|
|
-bash | --bash | -b | --b) |
| 732 |
|
|
ac_prev=BASH ;; |
| 733 |
|
|
-bash=* | --bash=*) |
| 734 |
|
|
BASH=$ac_optarg ;; |
| 735 |
edhill |
1.5 |
|
| 736 |
edhill |
1.6 |
-command | --command | -c | --c) |
| 737 |
|
|
ac_prev=COMMAND ;; |
| 738 |
|
|
-command=* | --command=*) |
| 739 |
|
|
COMMAND=$ac_optarg ;; |
| 740 |
edhill |
1.8 |
|
| 741 |
|
|
-make | --make | -m | --m) |
| 742 |
|
|
ac_prev=MAKE ;; |
| 743 |
|
|
-make=* | --make=*) |
| 744 |
|
|
MAKE=$ac_optarg ;; |
| 745 |
edhill |
1.1 |
|
| 746 |
jmc |
1.70 |
-odir | --odir) |
| 747 |
|
|
ac_prev=OUTDIR ;; |
| 748 |
|
|
-odir=* | --odir=*) |
| 749 |
|
|
OUTDIR=$ac_optarg ;; |
| 750 |
|
|
|
| 751 |
edhill |
1.50 |
-ptracers | --ptracers | -ptr | --ptr) |
| 752 |
|
|
ac_prev=PTRACERS_NUM ;; |
| 753 |
|
|
-ptracers=* | --ptracers=* | -ptr=* | --ptr=*) |
| 754 |
|
|
PTRACERS_NUM=$ac_optarg ;; |
| 755 |
|
|
|
| 756 |
edhill |
1.43 |
-j) ac_prev=JOBS ;; |
| 757 |
|
|
-j=*) JOBS=$ac_optarg ;; |
| 758 |
|
|
|
| 759 |
edhill |
1.10 |
-clean | --clean) |
| 760 |
jmc |
1.69 |
CLEANUP=t ; DELDIR=t ;; |
| 761 |
edhill |
1.10 |
|
| 762 |
|
|
-quick | --quick | -q | --q) |
| 763 |
|
|
QUICK=t ;; |
| 764 |
|
|
-nogenmake | --nogenmake | -ng | --ng) |
| 765 |
|
|
NOGENMAKE=t ;; |
| 766 |
|
|
-noclean | --noclean | -nc | --nc) |
| 767 |
|
|
NOCLEAN=t ;; |
| 768 |
|
|
-nodepend | --nodepend | -nd | --nd) |
| 769 |
|
|
NODEPEND=t ;; |
| 770 |
|
|
|
| 771 |
edhill |
1.68 |
-postclean | --postclean | -pc | --pc) |
| 772 |
|
|
POSTCLEAN=t ;; |
| 773 |
|
|
|
| 774 |
edhill |
1.18 |
-mpi) MPI=t ;; |
| 775 |
edhill |
1.10 |
|
| 776 |
edhill |
1.24 |
-adm | -ad) ADM=t ;; |
| 777 |
|
|
|
| 778 |
edhill |
1.10 |
-ieee) IEEE=true ;; |
| 779 |
|
|
-noieee) IEEE= ;; |
| 780 |
|
|
|
| 781 |
edhill |
1.1 |
-verbose) verbose=2 ;; |
| 782 |
|
|
-debug) debug=1 ;; |
| 783 |
|
|
-quiet) verbose=0 ;; |
| 784 |
|
|
|
| 785 |
edhill |
1.40 |
-deldir | -dd) DELDIR=t ;; |
| 786 |
|
|
|
| 787 |
edhill |
1.1 |
-*) |
| 788 |
|
|
echo "Error: unrecognized option: "$ac_option |
| 789 |
|
|
usage |
| 790 |
|
|
;; |
| 791 |
|
|
|
| 792 |
|
|
*) |
| 793 |
|
|
echo "Error: unrecognized argument: "$ac_option |
| 794 |
|
|
usage |
| 795 |
|
|
;; |
| 796 |
|
|
|
| 797 |
|
|
esac |
| 798 |
|
|
|
| 799 |
|
|
done |
| 800 |
|
|
|
| 801 |
edhill |
1.10 |
if test "x$QUICK" = xt ; then |
| 802 |
|
|
NOGENMAKE=t |
| 803 |
|
|
NOCLEAN=t |
| 804 |
|
|
NODEPEND=t |
| 805 |
|
|
fi |
| 806 |
|
|
|
| 807 |
edhill |
1.1 |
if test "x$TESTDIRS" = x ; then |
| 808 |
|
|
TESTDIRS=`scandirs` |
| 809 |
|
|
fi |
| 810 |
|
|
|
| 811 |
edhill |
1.10 |
if test "x$OPTFILE" = xNONE -a "x$MITGCM_OF" != x ; then |
| 812 |
|
|
OPTFILE=$MITGCM_OF |
| 813 |
|
|
fi |
| 814 |
|
|
|
| 815 |
jmc |
1.76 |
if test "x$ADM" = xt ; then |
| 816 |
|
|
EXECUTABLE="mitgcmuv_ad" |
| 817 |
jmc |
1.78 |
OUTPUTFILE="output_adm.txt" |
| 818 |
jmc |
1.76 |
else |
| 819 |
|
|
EXECUTABLE="mitgcmuv" |
| 820 |
|
|
OUTPUTFILE="output.txt" |
| 821 |
|
|
fi |
| 822 |
|
|
|
| 823 |
edhill |
1.24 |
if test "x$ADM" = xt -a "x$COMMAND" = x ; then |
| 824 |
jmc |
1.77 |
COMMAND="./$EXECUTABLE > $OUTPUTFILE" |
| 825 |
edhill |
1.24 |
fi |
| 826 |
|
|
|
| 827 |
|
|
if test "x$COMMAND" = x ; then |
| 828 |
jmc |
1.76 |
COMMAND="./$EXECUTABLE > $OUTPUTFILE" |
| 829 |
edhill |
1.24 |
fi |
| 830 |
|
|
|
| 831 |
jmc |
1.76 |
#echo "OK" |
| 832 |
|
|
echo "OK (COMMAND= $COMMAND )" |
| 833 |
edhill |
1.1 |
|
| 834 |
|
|
# create the FORTRAN comparison code |
| 835 |
|
|
createcodelet |
| 836 |
|
|
|
| 837 |
|
|
# build the mpack utility |
| 838 |
edhill |
1.31 |
if test "x$ADDRESSES" = xNONE -o "x$ADDRESSES" = x ; then |
| 839 |
edhill |
1.32 |
echo "skipping mpack build" |
| 840 |
|
|
else |
| 841 |
edhill |
1.31 |
build_mpack |
| 842 |
|
|
fi |
| 843 |
edhill |
1.1 |
|
| 844 |
|
|
# Create a uniquely named directory to store results |
| 845 |
|
|
MACH=`hostname` |
| 846 |
edhill |
1.2 |
UNAMEA=`uname -a` |
| 847 |
edhill |
1.1 |
DATE=`date +%Y%m%d` |
| 848 |
edhill |
1.25 |
BASE="tr_"$MACH"_"$DATE"_" |
| 849 |
jmc |
1.70 |
if test "x$OUTDIR" != x ; then |
| 850 |
|
|
BASE="tr_"$OUTDIR"_"$DATE"_" |
| 851 |
|
|
fi |
| 852 |
edhill |
1.1 |
DNUM=0 |
| 853 |
|
|
DRESULTS="$BASE$DNUM" |
| 854 |
|
|
while test -e $DRESULTS ; do |
| 855 |
|
|
DNUM=$(( $DNUM + 1 )) |
| 856 |
|
|
DRESULTS="$BASE$DNUM" |
| 857 |
|
|
done |
| 858 |
|
|
mkdir $DRESULTS |
| 859 |
|
|
RETVAL=$? |
| 860 |
|
|
if test "x$RETVAL" != x0 ; then |
| 861 |
edhill |
1.20 |
echo "ERROR: Can't create results directory \"./$DRESULTS\"" |
| 862 |
edhill |
1.1 |
exit 1 |
| 863 |
|
|
fi |
| 864 |
|
|
SUMMARY="$DRESULTS/summary.txt" |
| 865 |
edhill |
1.34 |
printf "Start time: " >> $SUMMARY |
| 866 |
edhill |
1.16 |
start_date=`date` |
| 867 |
edhill |
1.17 |
echo $start_date > $SUMMARY |
| 868 |
edhill |
1.1 |
|
| 869 |
edhill |
1.11 |
of_path= |
| 870 |
edhill |
1.10 |
if test "x$OPTFILE" != xNONE ; then |
| 871 |
|
|
if test -r $OPTFILE ; then |
| 872 |
edhill |
1.11 |
# get the path |
| 873 |
|
|
path=${OPTFILE%/*} |
| 874 |
|
|
if test "x$path" = x ; then |
| 875 |
|
|
of_path=`pwd` |
| 876 |
|
|
else |
| 877 |
|
|
of_path=`( cd $path > /dev/null 2>&1 ; pwd )` |
| 878 |
|
|
fi |
| 879 |
|
|
file=${OPTFILE##*/} |
| 880 |
|
|
OPTFILE=$of_path/$file |
| 881 |
edhill |
1.21 |
cp $OPTFILE $DRESULTS |
| 882 |
|
|
echo >> $SUMMARY |
| 883 |
|
|
echo " OPTFILE=$OPTFILE" >> $SUMMARY |
| 884 |
edhill |
1.11 |
else |
| 885 |
edhill |
1.21 |
echo | tee $SUMMARY |
| 886 |
|
|
echo "ERROR: can't read OPTFILE=\"$OPTFILE\"" | tee $SUMMARY |
| 887 |
|
|
exit 1 |
| 888 |
edhill |
1.10 |
fi |
| 889 |
edhill |
1.21 |
else |
| 890 |
|
|
echo >> $SUMMARY |
| 891 |
|
|
echo "No \"OPTFILE\" was explicitly specified by testreport," >> $SUMMARY |
| 892 |
|
|
echo " so the genmake default will be used." >> $SUMMARY |
| 893 |
edhill |
1.10 |
fi |
| 894 |
|
|
echo |
| 895 |
|
|
echo >> $SUMMARY |
| 896 |
edhill |
1.24 |
if test "x$ADM" = x ; then |
| 897 |
edhill |
1.49 |
line_0=" ----T----- ----S----- ----U----- ----V-----" |
| 898 |
|
|
line_1="G D M c m s m s m s m s" |
| 899 |
|
|
line_2="E p a R g m m e . m m e . m m e . m m e ." |
| 900 |
|
|
line_3="N n k u 2 i a a d i a a d i a a d i a a d" |
| 901 |
|
|
line_4="2 d e n d n x n . n x n . n x n . n x n ." |
| 902 |
edhill |
1.50 |
for ii in $PTRACERS_NUM ; do |
| 903 |
edhill |
1.49 |
# tst=`eval 'echo $HAVE_PTR0'$ii` |
| 904 |
|
|
# if test "x$tst" = xt ; then |
| 905 |
|
|
line_0="$line_0 --PTR 0"$ii"--" |
| 906 |
|
|
line_1="$line_1 m s" |
| 907 |
|
|
line_2="$line_2 m m e ." |
| 908 |
|
|
line_3="$line_3 i a a d" |
| 909 |
|
|
line_4="$line_4 n x n ." |
| 910 |
|
|
# fi |
| 911 |
|
|
done |
| 912 |
|
|
echo "$line_0" | tee -a $SUMMARY |
| 913 |
|
|
echo "$line_1" | tee -a $SUMMARY |
| 914 |
|
|
echo "$line_2" | tee -a $SUMMARY |
| 915 |
|
|
echo "$line_3" | tee -a $SUMMARY |
| 916 |
|
|
echo "$line_4" | tee -a $SUMMARY |
| 917 |
|
|
echo " " | tee -a $SUMMARY |
| 918 |
edhill |
1.24 |
else |
| 919 |
|
|
echo "ADJOINT=true" >> $SUMMARY |
| 920 |
|
|
echo >> $SUMMARY |
| 921 |
|
|
cat << EOF | tee -a $SUMMARY |
| 922 |
|
|
G D M C G |
| 923 |
|
|
E p a R o r |
| 924 |
|
|
N n k u s a |
| 925 |
|
|
2 d e n t d |
| 926 |
|
|
|
| 927 |
|
|
EOF |
| 928 |
|
|
fi |
| 929 |
edhill |
1.1 |
|
| 930 |
edhill |
1.10 |
# ...and each test directory... |
| 931 |
|
|
for dir in $TESTDIRS ; do |
| 932 |
|
|
|
| 933 |
|
|
# Cleanup only! |
| 934 |
|
|
if test "x$CLEANUP" = xt ; then |
| 935 |
|
|
if test -r $dir/build/Makefile ; then |
| 936 |
|
|
( cd $dir/build ; make CLEAN ) |
| 937 |
|
|
fi |
| 938 |
|
|
if test -r $dir/input/Makefile ; then |
| 939 |
|
|
( cd $dir/input ; make CLEAN ) |
| 940 |
|
|
fi |
| 941 |
edhill |
1.62 |
( |
| 942 |
|
|
cd $dir |
| 943 |
|
|
rm -rf tr_run.* |
| 944 |
|
|
) |
| 945 |
edhill |
1.10 |
continue |
| 946 |
edhill |
1.1 |
fi |
| 947 |
edhill |
1.3 |
|
| 948 |
edhill |
1.10 |
# Verify that the testdir exists and contains previous |
| 949 |
|
|
# results in the correct location--or skip this directory! |
| 950 |
edhill |
1.24 |
fout= |
| 951 |
|
|
if test "x$ADM" = x ; then |
| 952 |
|
|
fout=$dir"/results/output.txt" |
| 953 |
|
|
else |
| 954 |
jmc |
1.78 |
fout=$dir"/results_ad/output_adm.txt" |
| 955 |
edhill |
1.24 |
fi |
| 956 |
|
|
if test ! -r $fout ; then |
| 957 |
|
|
echo "can't read \"$fout\" -- skipping $dir" |
| 958 |
edhill |
1.10 |
continue |
| 959 |
|
|
fi |
| 960 |
edhill |
1.53 |
if test "x$ADM" = x ; then |
| 961 |
|
|
check_for_add_mon_output $fout |
| 962 |
|
|
fi |
| 963 |
edhill |
1.7 |
|
| 964 |
edhill |
1.49 |
# Check for additional types of monitor output |
| 965 |
|
|
|
| 966 |
edhill |
1.12 |
builddir="input" |
| 967 |
|
|
rundir="input" |
| 968 |
|
|
use_seperate_build=0 |
| 969 |
|
|
if test -d $dir/build -a -r $dir/build ; then |
| 970 |
|
|
builddir="build" |
| 971 |
|
|
rundir="build" |
| 972 |
|
|
use_seperate_build=1 |
| 973 |
|
|
linkdata $use_seperate_build $dir/$rundir |
| 974 |
edhill |
1.10 |
fi |
| 975 |
|
|
|
| 976 |
edhill |
1.34 |
# Check whether there are "extra runs" for this testdir |
| 977 |
|
|
extra_runs= |
| 978 |
|
|
if test "x$ADM" = x -a "x$use_seperate_build" = x1 ; then |
| 979 |
|
|
ex_run_dirs=`( cd $dir ; echo input.* )` |
| 980 |
|
|
echo "ex_run_dirs='$ex_run_dirs'" |
| 981 |
|
|
for exd in $ex_run_dirs ; do |
| 982 |
|
|
name=`echo $exd | sed -e 's/input.//g'` |
| 983 |
|
|
outf="$dir/results/output.txt.$name" |
| 984 |
|
|
if test -f $outf -a -r $outf ; then |
| 985 |
|
|
extra_runs="$extra_runs $name" |
| 986 |
|
|
fi |
| 987 |
|
|
done |
| 988 |
|
|
fi |
| 989 |
|
|
|
| 990 |
edhill |
1.24 |
if test "x$ADM" = x ; then |
| 991 |
edhill |
1.27 |
code_dir=code |
| 992 |
edhill |
1.24 |
CODE_DIR=$dir/code |
| 993 |
|
|
else |
| 994 |
edhill |
1.27 |
code_dir=code_ad |
| 995 |
edhill |
1.24 |
CODE_DIR=$dir/code_ad |
| 996 |
|
|
fi |
| 997 |
edhill |
1.10 |
BUILD_DIR=$dir/$builddir |
| 998 |
edhill |
1.28 |
|
| 999 |
edhill |
1.30 |
if test ! -r $CODE_DIR"/SIZE.h_mpi" -a "x$MPI" = "xt" ; then |
| 1000 |
edhill |
1.28 |
echo "can't find \"$CODE_DIR/SIZE.h_mpi\" -- skipping $dir" |
| 1001 |
|
|
continue |
| 1002 |
|
|
fi |
| 1003 |
|
|
|
| 1004 |
|
|
echo "-------------------------------------------------------------------------------" |
| 1005 |
|
|
echo |
| 1006 |
|
|
echo "Experiment: $dir" |
| 1007 |
|
|
echo |
| 1008 |
|
|
unset genmake makedepend make run |
| 1009 |
jmc |
1.73 |
results='-- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- --' |
| 1010 |
edhill |
1.10 |
|
| 1011 |
|
|
# Create an output dir for each OPTFILE/tdir combination |
| 1012 |
edhill |
1.20 |
rel_CDIR=$DRESULTS"/"$dir |
| 1013 |
|
|
mkdir $rel_CDIR |
| 1014 |
|
|
CDIR=`pwd`"/$rel_CDIR" |
| 1015 |
edhill |
1.10 |
|
| 1016 |
|
|
if test "x$CLEANUP" = xt ; then |
| 1017 |
|
|
makeclean $dir/$builddir |
| 1018 |
|
|
else |
| 1019 |
edhill |
1.1 |
genmakemodel $dir/$builddir && genmake=Y \ |
| 1020 |
|
|
&& makeclean $dir/$builddir \ |
| 1021 |
edhill |
1.27 |
&& symlink_mpifiles $dir $code_dir $builddir \ |
| 1022 |
edhill |
1.1 |
&& makedependmodel $dir/$builddir && makedepend=Y \ |
| 1023 |
|
|
&& makemodel $dir/$builddir && make=Y \ |
| 1024 |
edhill |
1.12 |
&& linkdata $use_seperate_build $dir/$rundir \ |
| 1025 |
|
|
&& runmodel $dir/$rundir && run=Y \ |
| 1026 |
edhill |
1.1 |
&& results=`testoutput $dir $rundir` |
| 1027 |
edhill |
1.10 |
fi |
| 1028 |
|
|
|
| 1029 |
|
|
echo |
| 1030 |
edhill |
1.24 |
if test "x$ADM" = x ; then |
| 1031 |
|
|
fres=`formatresults $dir ${genmake:-N} ${makedepend:-N} ${make:-N} ${run:-N} $results` |
| 1032 |
edhill |
1.34 |
echo |
| 1033 |
|
|
echo "$fres" >> $SUMMARY |
| 1034 |
|
|
echo "fresults='$fres'" > $CDIR"/summary.txt" |
| 1035 |
|
|
echo "MACH='$MACH'" >> $CDIR"/summary.txt" |
| 1036 |
|
|
echo "UNAMEA='$UNAMEA'" >> $CDIR"/summary.txt" |
| 1037 |
|
|
echo "DATE='$DATE'" >> $CDIR"/summary.txt" |
| 1038 |
|
|
echo "tdir='$dir'" >> $CDIR"/summary.txt" |
| 1039 |
|
|
|
| 1040 |
|
|
for ex in $extra_runs ; do |
| 1041 |
jmc |
1.73 |
unset run |
| 1042 |
|
|
results='-- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- --' |
| 1043 |
|
|
# Create an output dir for each OPTFILE/tdir.ex combination |
| 1044 |
|
|
rel_CDIR=$DRESULTS"/"$dir"."$ex |
| 1045 |
|
|
mkdir $rel_CDIR |
| 1046 |
|
|
CDIR=`pwd`"/$rel_CDIR" |
| 1047 |
edhill |
1.61 |
test ! -e "$dir/tr_run.$ex" && mkdir "$dir/tr_run.$ex" |
| 1048 |
edhill |
1.62 |
for ldir in input.$ex input ; do |
| 1049 |
edhill |
1.61 |
( |
| 1050 |
|
|
cd "$dir/$ldir" > /dev/null 2>&1 |
| 1051 |
|
|
ls -1 2>/dev/null \ |
| 1052 |
|
|
| sed -e 's|^CVS$||g' | sed -e 's|^output.txt$||g' |
| 1053 |
|
|
) > tr_exrun_links |
| 1054 |
|
|
( |
| 1055 |
|
|
cd "$dir/tr_run.$ex" |
| 1056 |
|
|
cat ../../tr_exrun_links | while read i ; do |
| 1057 |
|
|
if test ! "x$i" = x ; then |
| 1058 |
edhill |
1.62 |
test ! -r $i && ln -s "../"$ldir"/"$i $i |
| 1059 |
edhill |
1.61 |
fi |
| 1060 |
|
|
done |
| 1061 |
|
|
) |
| 1062 |
|
|
test -e tr_exrun_links && rm -f tr_exrun_links |
| 1063 |
|
|
done |
| 1064 |
edhill |
1.62 |
ldir=build |
| 1065 |
|
|
( |
| 1066 |
jmc |
1.75 |
cd $dir/tr_run.$ex |
| 1067 |
|
|
test ! -e mitgcmuv && ln -s "../"$ldir"/"mitgcmuv . |
| 1068 |
edhill |
1.62 |
) |
| 1069 |
jmc |
1.42 |
runmodel $dir/tr_run.$ex && run=Y \ |
| 1070 |
|
|
&& results=`testoutput $dir tr_run.$ex "."$ex` |
| 1071 |
edhill |
1.34 |
fres=`printf '%s %s %s %s' ${genmake:-N} ${makedepend:-N} ${make:-N} ${run:-N}` |
| 1072 |
|
|
fres=`formatresults $dir ${genmake:-N} ${makedepend:-N} ${make:-N} ${run:-N} $results` |
| 1073 |
|
|
fres="$fres.$ex" |
| 1074 |
|
|
echo |
| 1075 |
|
|
echo "$fres" >> $SUMMARY |
| 1076 |
|
|
echo "fresults='$fres'" > $CDIR"/summary.txt" |
| 1077 |
|
|
echo "MACH='$MACH'" >> $CDIR"/summary.txt" |
| 1078 |
|
|
echo "UNAMEA='$UNAMEA'" >> $CDIR"/summary.txt" |
| 1079 |
|
|
echo "DATE='$DATE'" >> $CDIR"/summary.txt" |
| 1080 |
jmc |
1.73 |
echo "tdir='$dir.$ex'" >> $CDIR"/summary.txt" |
| 1081 |
edhill |
1.34 |
done |
| 1082 |
edhill |
1.24 |
else |
| 1083 |
|
|
fres=`printf '%s %s %s %s' ${genmake:-N} ${makedepend:-N} ${make:-N} ${run:-N}` |
| 1084 |
|
|
fres=$fres"$results $dir" |
| 1085 |
edhill |
1.34 |
echo |
| 1086 |
|
|
echo "$fres" >> $SUMMARY |
| 1087 |
|
|
echo "fresults='$fres'" > $CDIR"/summary.txt" |
| 1088 |
|
|
echo "MACH='$MACH'" >> $CDIR"/summary.txt" |
| 1089 |
|
|
echo "UNAMEA='$UNAMEA'" >> $CDIR"/summary.txt" |
| 1090 |
|
|
echo "DATE='$DATE'" >> $CDIR"/summary.txt" |
| 1091 |
|
|
echo "tdir='$dir'" >> $CDIR"/summary.txt" |
| 1092 |
jmc |
1.77 |
grep -A3 'Seconds in section "ALL' $dir/$rundir/$OUTPUTFILE \ |
| 1093 |
|
|
>> $CDIR"/summary.txt" |
| 1094 |
edhill |
1.24 |
fi |
| 1095 |
edhill |
1.68 |
|
| 1096 |
|
|
postclean $dir/$builddir |
| 1097 |
edhill |
1.10 |
|
| 1098 |
|
|
echo "-------------------------------------------------------------------------------" |
| 1099 |
|
|
|
| 1100 |
edhill |
1.1 |
done |
| 1101 |
|
|
|
| 1102 |
edhill |
1.34 |
printf "Start time: " >> $SUMMARY |
| 1103 |
edhill |
1.16 |
echo $start_date >> $SUMMARY |
| 1104 |
edhill |
1.34 |
printf "End time: " >> $SUMMARY |
| 1105 |
edhill |
1.13 |
date >> $SUMMARY |
| 1106 |
edhill |
1.20 |
|
| 1107 |
|
|
# If addresses were supplied and mpack built successfully, then try |
| 1108 |
|
|
# to send email using mpack. |
| 1109 |
|
|
if test "x$ADDRESSES" = xNONE -o "x$ADDRESSES" = x ; then |
| 1110 |
|
|
echo "No results email was sent." |
| 1111 |
|
|
else |
| 1112 |
|
|
if test "x$HAVE_MPACK" = xt ; then |
| 1113 |
|
|
tar -cf $DRESULTS".tar" $DRESULTS > /dev/null 2>&1 \ |
| 1114 |
|
|
&& gzip $DRESULTS".tar" \ |
| 1115 |
edhill |
1.44 |
&& $MPACK -s MITgcm-test -m 3555000 $DRESULTS".tar.gz" $ADDRESSES |
| 1116 |
edhill |
1.20 |
RETVAL=$? |
| 1117 |
|
|
if test "x$RETVAL" != x0 ; then |
| 1118 |
|
|
echo |
| 1119 |
|
|
echo "Warning: The tar, gzip, & mpack step failed. Please send email" |
| 1120 |
|
|
echo " to <MITgcm-support@mitgcm.org> for help. You may copy the " |
| 1121 |
|
|
echo " summary of results from the directory \"$DRESULTS\"." |
| 1122 |
|
|
echo |
| 1123 |
|
|
else |
| 1124 |
|
|
echo |
| 1125 |
|
|
echo "An email containing results was sent to the following addresses:" |
| 1126 |
|
|
echo " \"$ADDRESSES\"" |
| 1127 |
|
|
echo |
| 1128 |
|
|
fi |
| 1129 |
|
|
test -f $DRESULTS".tar" && rm -f $DRESULTS".tar" |
| 1130 |
|
|
test -f $DRESULTS".tar.gz" && rm -f $DRESULTS".tar.gz" |
| 1131 |
|
|
fi |
| 1132 |
|
|
fi |
| 1133 |
edhill |
1.13 |
|
| 1134 |
edhill |
1.22 |
# rm -f tmp_cmpnum.f a.out |
| 1135 |
|
|
rm -f tmp_cmpnum.c tmp_cmpnum |
| 1136 |
edhill |
1.1 |
|
| 1137 |
edhill |
1.12 |
if test "x$CLEANUP" != xt ; then |
| 1138 |
jmc |
1.65 |
cat $SUMMARY | sed 's/ -- -- -- --//g' |
| 1139 |
edhill |
1.25 |
if test -e tr_out.txt ; then |
| 1140 |
|
|
mv tr_out.txt tr_out.txt.old |
| 1141 |
edhill |
1.14 |
fi |
| 1142 |
jmc |
1.65 |
cat $SUMMARY | sed 's/ -- -- -- --//g' > tr_out.txt |
| 1143 |
edhill |
1.12 |
fi |
| 1144 |
edhill |
1.1 |
|
| 1145 |
edhill |
1.40 |
if test "x$DELDIR" = xt ; then |
| 1146 |
|
|
rm -rf $DRESULTS |
| 1147 |
|
|
fi |
| 1148 |
|
|
|
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