1 |
edhill |
1.19 |
#! /usr/bin/env bash |
2 |
edhill |
1.1 |
# |
3 |
edhill |
1.74 |
# $Header: /u/gcmpack/MITgcm/verification/testreport,v 1.73 2005/12/03 23:23:41 jmc Exp $ |
4 |
edhill |
1.12 |
# $Name: $ |
5 |
edhill |
1.1 |
# |
6 |
|
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|
7 |
|
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usage() |
8 |
|
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{ |
9 |
|
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echo |
10 |
|
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echo "Usage: $0 [OPTIONS]" |
11 |
|
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echo |
12 |
|
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echo "where possible OPTIONS are:" |
13 |
|
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echo " (-help|-h) print usage" |
14 |
edhill |
1.7 |
echo " (-mpi) use MPI input files" |
15 |
edhill |
1.10 |
echo " (-ieee|-noieee) if possible, use IEEE compiler flags" |
16 |
edhill |
1.41 |
echo " (DEF=\"-ieee\")" |
17 |
edhill |
1.6 |
echo " (-optfile=|-of=)STRING list of optfiles to use" |
18 |
edhill |
1.20 |
echo " (-a|-addr) STRING list of email recipients" |
19 |
edhill |
1.6 |
echo " (DEF=\"edhill@mitgcm.org\")" |
20 |
edhill |
1.20 |
echo " (-t|-tdir) STRING list of test dirs to use" |
21 |
edhill |
1.6 |
echo " (DEF=\"\" which builds all)" |
22 |
edhill |
1.20 |
echo " (-b|-bash) STRING preferred location of a \"bash\" or" |
23 |
|
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echo " Bourne-compatible \"sh\" shell" |
24 |
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echo " (DEF=\"\" for \"bash\")" |
25 |
edhill |
1.24 |
echo " (-adm|-ad) perform an adjoint run" |
26 |
edhill |
1.20 |
echo " (-command) STRING command to run" |
27 |
edhill |
1.6 |
echo " (DEF=\"make output.txt\")" |
28 |
edhill |
1.20 |
echo " (-m|-make) STRING command to use for \"make\"" |
29 |
edhill |
1.8 |
echo " (DEF=\"make\")" |
30 |
jmc |
1.70 |
echo " (-odir) STRING used to build output directory name" |
31 |
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echo " (DEF=\"hostname\")" |
32 |
edhill |
1.50 |
echo " (-ptracers|-ptr) STRING specify which ptracers to test" |
33 |
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echo " (DEF=\"1 2 3 4 5\")" |
34 |
edhill |
1.43 |
echo " (-j) JOBS use \"make -j JOBS\" for parallel builds" |
35 |
edhill |
1.10 |
echo " (-clean) *ONLY* run \"make CLEAN\"" |
36 |
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echo " (-quick|-q) same as \"-nogenmake -noclean -nodepend\"" |
37 |
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echo " (-nogenmake|-ng) skip the genmake stage" |
38 |
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echo " (-noclean|-nc) skip the \"make clean\" stage" |
39 |
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echo " (-nodepend|-nd) skip the \"make depend\" stage" |
40 |
edhill |
1.40 |
echo " (-deldir|-dd) on success, delete the output directory" |
41 |
edhill |
1.6 |
echo |
42 |
edhill |
1.50 |
echo "and where STRING can be a whitespace-delimited list" |
43 |
edhill |
1.6 |
echo "such as:" |
44 |
edhill |
1.50 |
echo |
45 |
edhill |
1.6 |
echo " -t 'exp0 exp2 exp3' " |
46 |
|
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echo " -addr='abc@123.com testing@home.org'" |
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edhill |
1.1 |
echo |
48 |
edhill |
1.50 |
echo "provided that the expression is properly quoted within the current" |
49 |
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echo "shell (note the use of single quotes to protect white space)." |
50 |
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echo |
51 |
edhill |
1.1 |
exit 1 |
52 |
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} |
53 |
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54 |
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# build the mpack utility |
55 |
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build_mpack() |
56 |
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{ |
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edhill |
1.34 |
printf "building the mpack utility... " |
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edhill |
1.1 |
if test ! -x "$MPACKDIR/mpack" ; then |
59 |
|
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if test ! -d $MPACKDIR ; then |
60 |
edhill |
1.20 |
echo |
61 |
edhill |
1.1 |
echo "Error: can't find \"$MPACKDIR\"" |
62 |
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echo " are you sure this program is being run in the correct " |
63 |
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echo " (that is, \"MITGCM_ROOT\verification\") directory?" |
64 |
edhill |
1.20 |
echo |
65 |
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HAVE_MPACK=f |
66 |
edhill |
1.1 |
fi |
67 |
edhill |
1.34 |
printf "building mpack... " |
68 |
edhill |
1.26 |
if test "x$CC" = x ; then |
69 |
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export CC=cc |
70 |
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fi |
71 |
edhill |
1.25 |
( cd $MPACKDIR && ./configure && $MAKE ) > tr_build_mpack.out 2>&1 |
72 |
edhill |
1.1 |
RETVAL=$? |
73 |
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if test "x$RETVAL" != x0 ; then |
74 |
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echo |
75 |
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echo "Error building the mpack tools at: $MPACK_DIR" |
76 |
edhill |
1.20 |
echo |
77 |
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HAVE_MPACK=f |
78 |
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else |
79 |
edhill |
1.25 |
rm -f tr_build_mpack.out |
80 |
edhill |
1.20 |
HAVE_MPACK=t |
81 |
edhill |
1.1 |
fi |
82 |
edhill |
1.20 |
else |
83 |
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HAVE_MPACK=t |
84 |
edhill |
1.1 |
fi |
85 |
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echo "OK" |
86 |
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} |
87 |
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88 |
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testoutput_for_prop() |
89 |
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{ |
90 |
edhill |
1.34 |
# testoutput_for_prop dir s1 label subdir extension |
91 |
edhill |
1.1 |
# |
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# compares files in $dir/$subdir/output.txt and $dir/results/output.txt |
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# using search strings s1 and text label |
94 |
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95 |
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if [ $debug -gt 0 ]; then |
96 |
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echo testoutput_for_prop: grep "$2" $1/$4/output.txt 1>&2 |
97 |
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fi |
98 |
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if [ -r $1/$4/output.txt ]; then |
99 |
edhill |
1.15 |
grep "$2" $1/$4/output.txt | sed 's/.*=//' | cat -n > tmp1.txt |
100 |
jmc |
1.67 |
lncntA=`wc -l tmp1.txt | awk '{print $1}' ` |
101 |
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if [ $lncntA -lt 3 ]; then |
102 |
edhill |
1.1 |
if [ $verbose -gt 0 ]; then |
103 |
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echo Not enough lines of output when searching for "$2" 1>&2 |
104 |
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fi |
105 |
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return 99 |
106 |
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fi |
107 |
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else |
108 |
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echo testoutput_for_prop: output.txt from model run was not readable 1>&2 |
109 |
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return 99 |
110 |
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fi |
111 |
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if [ $debug -gt 0 ]; then |
112 |
edhill |
1.34 |
echo testoutput_for_prop: grep "$2" $1/results/output.txt$5 1>&2 |
113 |
edhill |
1.1 |
fi |
114 |
edhill |
1.34 |
grep "$2" $1/results/output.txt$5 | sed 's/.*=//' | cat -n > tmp2.txt |
115 |
jmc |
1.67 |
lncntB=`wc -l tmp2.txt | awk '{print $1}' ` |
116 |
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if [ $lncntB -lt 3 ]; then |
117 |
edhill |
1.1 |
if [ $verbose -gt 0 ]; then |
118 |
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echo Not enough lines of output when searching for "$2" 1>&2 |
119 |
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fi |
120 |
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return 99 |
121 |
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fi |
122 |
jmc |
1.67 |
if [ $lncntA -ne $lncntB ]; then |
123 |
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if [ $verbose -gt 0 ]; then |
124 |
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echo Not same Nb of lines when searching for "$2" ":" $lncntA $lncntB 1>&2 |
125 |
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fi |
126 |
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return 99 |
127 |
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fi |
128 |
edhill |
1.72 |
has_nan=`cat tmp1.txt | grep -i nan | wc -l` |
129 |
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if [ $has_nan -gt 0 ] ; then |
130 |
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echo testoutput_for_prop: output.txt contains $has_nan NaN values 1>&2 |
131 |
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return 99 |
132 |
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fi |
133 |
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has_inf=`cat tmp1.txt | grep -i inf | wc -l` |
134 |
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if [ $has_inf -gt 0 ] ; then |
135 |
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echo testoutput_for_prop: output.txt contains $has_inf Inf values 1>&2 |
136 |
jmc |
1.71 |
return 99 |
137 |
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fi |
138 |
edhill |
1.1 |
if [ $debug -gt 0 ]; then |
139 |
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echo testoutput_for_prop: join tmp1.txt tmp2.txt 1>&2 |
140 |
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fi |
141 |
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join tmp1.txt tmp2.txt | awk '{print $1 " " $2 " " $3}' > tmp3.txt |
142 |
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if [ $debug -gt 0 ]; then |
143 |
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echo testoutput_for_prop: compare_lines 1>&2 |
144 |
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fi |
145 |
edhill |
1.22 |
if [ $verbose -gt 1 ]; then |
146 |
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cat tmp3.txt 1>&2 |
147 |
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fi |
148 |
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echo "-1" >> tmp3.txt |
149 |
edhill |
1.23 |
# On the SGI O3K (*not* the O2K), "cat -n" inserts a ":" after the line number |
150 |
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cat tmp3.txt | sed -e 's|:||g' > tmp4.txt |
151 |
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digits_of_similarity=`./tmp_cmpnum < tmp4.txt` |
152 |
edhill |
1.1 |
if [ $digits_of_similarity -eq 99 ]; then |
153 |
|
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if [ $verbose -gt 0 ]; then |
154 |
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echo testoutput_for_prop: No comparison was available for \"$2\" 1>&2 |
155 |
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fi |
156 |
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digits_of_similarity=99 |
157 |
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else |
158 |
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if [ $verbose -gt 0 ]; then |
159 |
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echo There were $digits_of_similarity decimal places of similarity for \"$2\" 1>&2 |
160 |
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fi |
161 |
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fi |
162 |
edhill |
1.23 |
rm -f tmp1.txt tmp2.txt tmp3.txt tmp4.txt |
163 |
edhill |
1.1 |
|
164 |
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return $digits_of_similarity |
165 |
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} |
166 |
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167 |
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dashnum() |
168 |
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{ |
169 |
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# dashnum n1 n2 n3 ... |
170 |
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# |
171 |
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# print numbers using %3i format or "--" if number = 99 |
172 |
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|
173 |
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for num in $@ ; do |
174 |
|
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if [ $num = 99 ]; then |
175 |
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printf ' --' |
176 |
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else |
177 |
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printf '%3i' $num |
178 |
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fi |
179 |
|
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done |
180 |
|
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} |
181 |
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|
182 |
edhill |
1.24 |
testoutput_ad() |
183 |
|
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{ |
184 |
|
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grep $3 $1/results_ad/output.txt_adm | awk '{print NR " " $5}' > t05.txt |
185 |
|
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grep $3 $1/$2/output.txt_adm | awk '{print NR " " $5}' > t15.txt |
186 |
|
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grep $3 $1/results_ad/output.txt_adm | awk '{print NR " " $6}' > t06.txt |
187 |
|
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grep $3 $1/$2/output.txt_adm | awk '{print NR " " $6}' > t16.txt |
188 |
|
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join t05.txt t15.txt > t5.txt |
189 |
|
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join t06.txt t16.txt > t6.txt |
190 |
|
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echo "-1" >> t5.txt |
191 |
|
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echo "-1" >> t6.txt |
192 |
|
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digits_5=`./tmp_cmpnum < t5.txt` |
193 |
|
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digits_6=`./tmp_cmpnum < t6.txt` |
194 |
|
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dashnum $digits_5 $digits_6 |
195 |
|
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rm -f t[01][56].txt t[56].txt |
196 |
|
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} |
197 |
|
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|
198 |
edhill |
1.49 |
check_for_add_mon_output() |
199 |
|
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{ |
200 |
|
|
# Check for additional types of monitor output |
201 |
|
|
if test "x$1" = x ; then |
202 |
|
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return |
203 |
|
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fi |
204 |
|
|
|
205 |
edhill |
1.50 |
for ii in $PTRACERS_NUM ; do |
206 |
|
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eval "HAVE_PTR0"$ii"=f" |
207 |
|
|
done |
208 |
|
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|
209 |
edhill |
1.49 |
ptr_add="trcstat_ptracerXX_min trcstat_ptracerXX_max" |
210 |
|
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ptr_add="$ptr_add trcstat_ptracerXX_mean trcstat_ptracerXX_sd" |
211 |
edhill |
1.50 |
for ii in $PTRACERS_NUM ; do |
212 |
edhill |
1.49 |
for jj in $ptr_add ; do |
213 |
|
|
name=`eval "echo $jj | sed -e 's|XX|0"$ii"|g'"` |
214 |
|
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tst=`grep $name $1 | wc -l | awk '{print $1}'` |
215 |
|
|
if test ! "x$tst" = x0 ; then |
216 |
|
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eval "HAVE_PTR0"$ii"=t" |
217 |
|
|
fi |
218 |
|
|
done |
219 |
|
|
# eval 'echo "HAVE_PTR0'$ii' = $HAVE_PTR0'$ii'"' |
220 |
|
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done |
221 |
|
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} |
222 |
|
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|
223 |
edhill |
1.1 |
testoutput() |
224 |
|
|
{ |
225 |
edhill |
1.34 |
# testoutput directory subdir extension |
226 |
edhill |
1.1 |
# |
227 |
|
|
# test output in "directory" |
228 |
edhill |
1.24 |
if test "x$ADM" = x ; then |
229 |
|
|
if [ $debug -gt 0 ]; then |
230 |
|
|
echo testoutput: testoutput_for_prop $1 cg2d_init_res 1>&2 |
231 |
|
|
fi |
232 |
edhill |
1.34 |
testoutput_for_prop $1 "cg2d_init_res" "cg2d init. residual" $2 $3; cg2dres=$? |
233 |
edhill |
1.24 |
if [ $debug -gt 0 ]; then |
234 |
|
|
echo testoutput: cg2dres=$cg2dres 1>&2 |
235 |
|
|
fi |
236 |
edhill |
1.34 |
testoutput_for_prop $1 "dynstat_theta_min" "theta minimum" $2 $3; tmin=$? |
237 |
|
|
testoutput_for_prop $1 "dynstat_theta_max" "theta maximum" $2 $3; tmax=$? |
238 |
|
|
testoutput_for_prop $1 "dynstat_theta_mean" "theta mean" $2 $3; tmean=$? |
239 |
|
|
testoutput_for_prop $1 "dynstat_theta_sd" "theta s.d." $2 $3; tsd=$? |
240 |
|
|
testoutput_for_prop $1 "dynstat_salt_min" "salt minimum" $2 $3; smin=$? |
241 |
|
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testoutput_for_prop $1 "dynstat_salt_max" "salt maximum" $2 $3; smax=$? |
242 |
|
|
testoutput_for_prop $1 "dynstat_salt_mean" "salt mean" $2 $3; smean=$? |
243 |
|
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testoutput_for_prop $1 "dynstat_salt_sd" "salt s.d." $2 $3; ssd=$? |
244 |
|
|
testoutput_for_prop $1 "dynstat_uvel_min" "U minimum" $2 $3; umin=$? |
245 |
|
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testoutput_for_prop $1 "dynstat_uvel_max" "U maximum" $2 $3; umax=$? |
246 |
|
|
testoutput_for_prop $1 "dynstat_uvel_mean" "U mean" $2 $3; umean=$? |
247 |
|
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testoutput_for_prop $1 "dynstat_uvel_sd" "U s.d." $2 $3; usd=$? |
248 |
|
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testoutput_for_prop $1 "dynstat_vvel_min" "V minimum" $2 $3; vmin=$? |
249 |
|
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testoutput_for_prop $1 "dynstat_vvel_max" "V maximum" $2 $3; vmax=$? |
250 |
|
|
testoutput_for_prop $1 "dynstat_vvel_mean" "V mean" $2 $3; vmean=$? |
251 |
|
|
testoutput_for_prop $1 "dynstat_vvel_sd" "V s.d." $2 $3; vsd=$? |
252 |
edhill |
1.49 |
|
253 |
edhill |
1.50 |
# This is for PTRACERS |
254 |
|
|
for ii in $PTRACERS_NUM ; do |
255 |
|
|
eval `echo "p0"$ii"_min=99"` |
256 |
|
|
eval `echo "p0"$ii"_max=99"` |
257 |
|
|
eval `echo "p0"$ii"_mean=99"` |
258 |
|
|
eval `echo "p0"$ii"_sd=99"` |
259 |
|
|
tst=`eval 'echo "$HAVE_PTR0'$ii'"'` |
260 |
|
|
#echo 'tst = '$tst |
261 |
|
|
if test "x$tst" = xt ; then |
262 |
|
|
a="trcstat_ptracer0" |
263 |
|
|
testoutput_for_prop $1 "$a"$ii"_min" "p0"$ii"_min" $2 $3 |
264 |
|
|
RETVAL=$? ; eval `echo "p0"$ii"_min="$RETVAL` |
265 |
|
|
testoutput_for_prop $1 "$a"$ii"_max" "p0"$ii"_max" $2 $3 |
266 |
|
|
RETVAL=$? ; eval `echo "p0"$ii"_max="$RETVAL` |
267 |
|
|
testoutput_for_prop $1 "$a"$ii"_mean" "p0"$ii"_mean" $2 $3 |
268 |
|
|
RETVAL=$? ; eval `echo "p0"$ii"_mean="$RETVAL` |
269 |
|
|
testoutput_for_prop $1 "$a"$ii"_sd" "p0"$ii"_sd" $2 $3 |
270 |
|
|
RETVAL=$? ; eval `echo "p0"$ii"_sd="$RETVAL` |
271 |
|
|
fi |
272 |
edhill |
1.49 |
done |
273 |
|
|
|
274 |
|
|
allargs="$cg2dres $tmin $tmax $tmean $tsd $smin $smax $smean $ssd" |
275 |
|
|
allargs="$allargs $umin $umax $umean $usd $vmin $vmax $vmean $vsd" |
276 |
|
|
allargs="$allargs $p01_min $p01_max $p01_mean $p01_sd" |
277 |
|
|
allargs="$allargs $p02_min $p02_max $p02_mean $p02_sd" |
278 |
|
|
allargs="$allargs $p03_min $p03_max $p03_mean $p03_sd" |
279 |
|
|
allargs="$allargs $p04_min $p04_max $p04_mean $p04_sd" |
280 |
|
|
allargs="$allargs $p05_min $p05_max $p05_mean $p05_sd" |
281 |
|
|
|
282 |
|
|
eval "dashnum $allargs" |
283 |
|
|
|
284 |
edhill |
1.24 |
else |
285 |
|
|
testoutput_ad $1 $2 "precision_grdchk_result" |
286 |
edhill |
1.1 |
fi |
287 |
|
|
} |
288 |
|
|
|
289 |
|
|
genmakemodel() |
290 |
|
|
{ |
291 |
|
|
# genmakemodel directory |
292 |
edhill |
1.10 |
if test "x$NOGENMAKE" = xt ; then |
293 |
|
|
echo "genmake skipped!" |
294 |
|
|
else |
295 |
edhill |
1.34 |
if test "x$BASH" = x ; then |
296 |
|
|
GENMAKE2="../../../tools/genmake2" |
297 |
|
|
else |
298 |
|
|
GENMAKE2="$BASH ../../../tools/genmake2 -bash $BASH" |
299 |
|
|
fi |
300 |
edhill |
1.10 |
( |
301 |
|
|
cd $1; |
302 |
edhill |
1.24 |
command="$GENMAKE2 -ds -m $MAKE" |
303 |
|
|
if test "x$ADM" = x ; then |
304 |
|
|
command="$command --mods=../code" |
305 |
|
|
else |
306 |
|
|
command="$command --mods=../code_ad" |
307 |
|
|
command="$command -adof=../../../tools/adjoint_options/adjoint_staf" |
308 |
|
|
fi |
309 |
edhill |
1.10 |
if test "x$OPTFILE" != xNONE ; then |
310 |
|
|
command="$command --optfile=$OPTFILE" |
311 |
|
|
fi |
312 |
|
|
if test "x$IEEE" != x ; then |
313 |
|
|
command="$command -ieee" |
314 |
|
|
fi |
315 |
edhill |
1.66 |
if test "x$MPI" = xt ; then |
316 |
|
|
command="$command -mpi" |
317 |
|
|
fi |
318 |
edhill |
1.10 |
printf 'genmake ... ' 1>&2 |
319 |
|
|
$command > make.log 2>&1 |
320 |
|
|
RETVAL=$? |
321 |
edhill |
1.44 |
# Reduce the size of the testing emails! |
322 |
edhill |
1.47 |
head -100 Makefile > $CDIR/Makefile_head |
323 |
edhill |
1.10 |
if test "x$RETVAL" != x0 ; then |
324 |
|
|
tail make.log |
325 |
|
|
echo "genmakemodel: genmake failed" 1>&2 |
326 |
edhill |
1.21 |
cp genmake_* make.log $CDIR |
327 |
edhill |
1.10 |
return 1 |
328 |
|
|
else |
329 |
edhill |
1.20 |
echo "successful" 1>&2 |
330 |
edhill |
1.1 |
fi |
331 |
edhill |
1.10 |
) |
332 |
|
|
fi |
333 |
edhill |
1.1 |
} |
334 |
|
|
|
335 |
|
|
makeclean() |
336 |
|
|
{ |
337 |
|
|
# makeclean directory |
338 |
edhill |
1.10 |
if test "x$NOCLEAN" = xt ; then |
339 |
|
|
echo "make CLEAN skipped!" |
340 |
|
|
else |
341 |
|
|
( |
342 |
|
|
cd $1; |
343 |
|
|
if test -e output.txt ; then |
344 |
|
|
rm -f output.txt |
345 |
|
|
fi |
346 |
|
|
printf 'make CLEAN ... ' 2>&1 |
347 |
|
|
if test -r Makefile ; then |
348 |
|
|
$MAKE CLEAN >> make.log 2>&1 |
349 |
|
|
RETVAL=$? |
350 |
|
|
if test "x$RETVAL" != x0 ; then |
351 |
|
|
tail make.log |
352 |
|
|
echo "makeclean: \"make CLEAN\" failed" 1>&2 |
353 |
|
|
cp make.log $CDIR"/make.log" |
354 |
|
|
return 1 |
355 |
|
|
fi |
356 |
|
|
fi |
357 |
edhill |
1.20 |
echo successful 1>&2 |
358 |
edhill |
1.10 |
exit 0 |
359 |
|
|
) |
360 |
|
|
fi |
361 |
|
|
} |
362 |
|
|
|
363 |
edhill |
1.68 |
postclean() |
364 |
|
|
{ |
365 |
|
|
# postclean directory |
366 |
|
|
if test "x$POSTCLEAN" = xt ; then |
367 |
|
|
( |
368 |
|
|
cd $1; |
369 |
|
|
if test -r Makefile ; then |
370 |
|
|
$MAKE CLEAN >> /dev/null 2>&1 |
371 |
|
|
fi |
372 |
|
|
exit 0 |
373 |
|
|
) |
374 |
|
|
fi |
375 |
|
|
} |
376 |
|
|
|
377 |
edhill |
1.10 |
makedependmodel() |
378 |
|
|
{ |
379 |
|
|
# makedependmodel directory |
380 |
|
|
if test "x$NODEPEND" = xt ; then |
381 |
|
|
echo "make depend skipped!" |
382 |
|
|
else |
383 |
|
|
( |
384 |
|
|
cd $1; |
385 |
|
|
printf 'make depend ... ' 1>&2 |
386 |
|
|
$MAKE depend >> make.log 2>&1 |
387 |
edhill |
1.1 |
RETVAL=$? |
388 |
|
|
if test "x$RETVAL" != x0 ; then |
389 |
|
|
tail make.log |
390 |
edhill |
1.10 |
echo "makedependmodel: make depend failed" 1>&2 |
391 |
edhill |
1.1 |
cp make.log $CDIR"/make.log" |
392 |
|
|
return 1 |
393 |
edhill |
1.10 |
else |
394 |
edhill |
1.20 |
echo successful 1>&2 |
395 |
edhill |
1.1 |
fi |
396 |
edhill |
1.10 |
) |
397 |
|
|
fi |
398 |
edhill |
1.1 |
} |
399 |
|
|
|
400 |
|
|
makemodel() |
401 |
|
|
{ |
402 |
|
|
# makemodel directory |
403 |
|
|
( |
404 |
|
|
cd $1; |
405 |
|
|
if test -r Makefile ; then |
406 |
|
|
printf 'make ... ' 1>&2 |
407 |
edhill |
1.24 |
if test "x$ADM" = x ; then |
408 |
edhill |
1.43 |
if test "x$JOBS" = x ; then |
409 |
|
|
$MAKE >> make.log 2>&1 |
410 |
|
|
else |
411 |
|
|
$MAKE -j $JOBS >> make.log 2>&1 |
412 |
|
|
fi |
413 |
edhill |
1.24 |
else |
414 |
|
|
$MAKE adall >> make.log 2>&1 |
415 |
|
|
fi |
416 |
edhill |
1.1 |
RETVAL=$? |
417 |
|
|
if test "x$RETVAL" != x0 ; then |
418 |
|
|
tail make.log |
419 |
|
|
echo failed 1>&2 |
420 |
|
|
cp make.log $CDIR"/make.log" |
421 |
|
|
return 1 |
422 |
|
|
else |
423 |
edhill |
1.20 |
echo successful 1>&2 |
424 |
edhill |
1.1 |
fi |
425 |
|
|
fi |
426 |
|
|
) |
427 |
|
|
} |
428 |
|
|
|
429 |
edhill |
1.27 |
symlink_mpifiles() |
430 |
|
|
{ |
431 |
|
|
# Put special links so that MPI specific files are used |
432 |
|
|
# This MUST be invoked between makeclean and makelinks because |
433 |
|
|
# the Makefile will link to non-mpi files by default |
434 |
|
|
|
435 |
|
|
dir=$1 |
436 |
|
|
code_dir=$2 |
437 |
|
|
BUILD_DIR=$dir/$3 |
438 |
|
|
CODE_DIR=$dir/$code_dir |
439 |
edhill |
1.45 |
|
440 |
edhill |
1.27 |
# These are files that should replace their counter-part when using -mpi |
441 |
|
|
MPI_FILES=`(cd $CODE_DIR; find . -name "*_mpi")` |
442 |
|
|
|
443 |
|
|
# Is this an MPI run? |
444 |
|
|
if test "x$MPI" = xt ; then |
445 |
|
|
# YES: We symbolically link these files to the build |
446 |
|
|
# dir so long as there is no real file in place |
447 |
|
|
for ii in $MPI_FILES ; do |
448 |
|
|
i=`echo $ii | sed 's:^\./::'` |
449 |
|
|
name=`echo $i | sed 's:_mpi::' ` |
450 |
|
|
cmp $CODE_DIR/$i $BUILD_DIR/$name > /dev/null 2>&1 |
451 |
|
|
RETVAL=$? |
452 |
|
|
if test "x$RETVAL" != x0 ; then |
453 |
|
|
if ! test -f $BUILD_DIR/$i ; then |
454 |
edhill |
1.45 |
#echo Linking $name to $i |
455 |
edhill |
1.27 |
(cd $BUILD_DIR; ln -sf ../$code_dir/$i $name) |
456 |
|
|
fi |
457 |
|
|
fi |
458 |
|
|
done |
459 |
|
|
else |
460 |
edhill |
1.45 |
# NO: We undo any _mpi symbolically linked files |
461 |
edhill |
1.27 |
for ii in $MPI_FILES ; do |
462 |
|
|
i=`echo $ii | sed 's:^\./::'` |
463 |
|
|
name=`echo $i | sed 's:_mpi::' ` |
464 |
|
|
if test -L $BUILD_DIR/$name ; then |
465 |
edhill |
1.45 |
cmp $BUILD_DIR/$name "../$code_dir/$name"_mpi > /dev/null 2>&1 |
466 |
|
|
RETVAL=$? |
467 |
|
|
if test "x$RETVAL" = x0 ; then |
468 |
|
|
#echo Un-linking $name from $linktarg |
469 |
edhill |
1.27 |
rm -f $BUILD_DIR/$name |
470 |
|
|
fi |
471 |
|
|
fi |
472 |
|
|
done |
473 |
|
|
fi |
474 |
|
|
|
475 |
|
|
} |
476 |
|
|
|
477 |
edhill |
1.1 |
linkdata() |
478 |
|
|
{ |
479 |
|
|
# linkdata flag |
480 |
|
|
# |
481 |
|
|
# symbolically link data files to run directory |
482 |
edhill |
1.12 |
if test "x$1" = x1 ; then |
483 |
|
|
( |
484 |
|
|
cd $2 |
485 |
edhill |
1.24 |
if test "x$ADM" = x ; then |
486 |
|
|
files=`( cd ../input ; ls -1 | grep -v CVS )` |
487 |
|
|
for i in $files ; do |
488 |
edhill |
1.60 |
if test ! -d "../input/"$i -a ! -f $i ; then |
489 |
edhill |
1.24 |
ln -sf "../input/"$i $i |
490 |
|
|
fi |
491 |
|
|
done |
492 |
|
|
else |
493 |
|
|
files=`( cd ../input ; ls -1 *.bin | grep -v CVS )` |
494 |
|
|
for i in $files ; do |
495 |
|
|
if test ! -d "../input/"$i ; then |
496 |
|
|
ln -sf "../input/"$i $i |
497 |
|
|
fi |
498 |
|
|
done |
499 |
|
|
files=`( cd ../input_ad ; ls -1 | grep -v CVS )` |
500 |
|
|
for i in $files ; do |
501 |
|
|
if test ! -d "../input_ad/"$i ; then |
502 |
|
|
ln -sf "../input_ad/"$i $i |
503 |
|
|
fi |
504 |
|
|
done |
505 |
|
|
fi |
506 |
edhill |
1.12 |
) |
507 |
edhill |
1.1 |
fi |
508 |
|
|
} |
509 |
|
|
|
510 |
|
|
runmodel() |
511 |
|
|
{ |
512 |
edhill |
1.6 |
# runmodel directory |
513 |
edhill |
1.1 |
# |
514 |
edhill |
1.24 |
# runs "$COMMAND in "directory" |
515 |
edhill |
1.6 |
# (where "$COMMAND" is relative to "directory") |
516 |
edhill |
1.1 |
( |
517 |
|
|
cd $1 |
518 |
edhill |
1.20 |
printf 'runmodel ... ' 1>&2 |
519 |
edhill |
1.6 |
# make output.txt |
520 |
edhill |
1.38 |
echo |
521 |
jmc |
1.46 |
rm -f run.log |
522 |
edhill |
1.39 |
# echo "COMMAND='$COMMAND'" |
523 |
|
|
# echo "pwd='"`pwd`"'" |
524 |
jmc |
1.46 |
( eval $COMMAND ) > run.log 2>&1 |
525 |
edhill |
1.6 |
RETVAL=$? |
526 |
|
|
if test "x$RETVAL" = x0 ; then |
527 |
jmc |
1.46 |
tail run.log |
528 |
edhill |
1.20 |
echo successful 1>&2 |
529 |
edhill |
1.44 |
# === Reduce the size of the testing emails! |
530 |
|
|
# if test "x$ADM" = x ; then |
531 |
|
|
# cp output.txt $CDIR"/output.txt" |
532 |
|
|
# else |
533 |
|
|
# cp output.txt_adm $CDIR"/output.txt_adm" |
534 |
|
|
# fi |
535 |
jmc |
1.48 |
if test -s STDERR.0000 ; then cp STDERR.0000 $CDIR"/STDERR.0000" ; fi |
536 |
edhill |
1.6 |
return 0 |
537 |
|
|
else |
538 |
edhill |
1.20 |
tail run.log |
539 |
|
|
echo failed 1>&2 |
540 |
|
|
cp run.log $CDIR"/run.log" |
541 |
jmc |
1.48 |
if test -s STDERR.0000 ; then cp STDERR.0000 $CDIR"/STDERR.0000" ; fi |
542 |
edhill |
1.6 |
return 1 |
543 |
edhill |
1.1 |
fi |
544 |
|
|
) |
545 |
|
|
} |
546 |
|
|
|
547 |
|
|
createcodelet() |
548 |
|
|
{ |
549 |
|
|
# create codelet for comparing model output |
550 |
|
|
|
551 |
edhill |
1.34 |
printf "creating the comparison code... " |
552 |
edhill |
1.22 |
cat > tmp_cmpnum.c <<EOF |
553 |
|
|
#include <stdio.h> |
554 |
|
|
#include <math.h> |
555 |
|
|
int main( int argc, char** argv ) { |
556 |
adcroft |
1.33 |
int linnum,best,lncnt; |
557 |
edhill |
1.52 |
double a,b,abave,relerr; |
558 |
jmc |
1.57 |
best = -22; |
559 |
adcroft |
1.33 |
lncnt = 0; |
560 |
|
|
while( 1 & (lncnt+=1) < 999 ) { |
561 |
edhill |
1.22 |
scanf("%d", &linnum); |
562 |
|
|
if (linnum == -1) break; |
563 |
|
|
scanf("%lf", &a); scanf("%lf", &b); |
564 |
edhill |
1.52 |
abave = 0.5*(fabs(a)+fabs(b)); |
565 |
|
|
if (abave > 0.0) { |
566 |
|
|
relerr=fabs(a-b)/abave; |
567 |
edhill |
1.64 |
if (relerr > 0.0) { linnum = (int)rint(log10(relerr)); } |
568 |
jmc |
1.57 |
else { linnum = -16 ; } |
569 |
|
|
best = (best > linnum) ? best : linnum; |
570 |
edhill |
1.22 |
} |
571 |
|
|
} |
572 |
adcroft |
1.33 |
if (lncnt == 999) best=-29; |
573 |
edhill |
1.22 |
printf("%d\n", -best); |
574 |
|
|
return 0; |
575 |
|
|
} |
576 |
|
|
EOF |
577 |
edhill |
1.58 |
$CC -o tmp_cmpnum tmp_cmpnum.c -lm |
578 |
edhill |
1.1 |
|
579 |
edhill |
1.22 |
if [ -x ./tmp_cmpnum ]; then |
580 |
edhill |
1.1 |
echo "OK" |
581 |
|
|
return 0 |
582 |
|
|
else |
583 |
|
|
echo |
584 |
edhill |
1.58 |
echo "ERROR: failed to compile comparison code -- please specify" |
585 |
|
|
echo " a C compiler using the CC environment variable." |
586 |
edhill |
1.1 |
exit 1 |
587 |
|
|
fi |
588 |
|
|
} |
589 |
|
|
|
590 |
|
|
formatresults() |
591 |
|
|
{ |
592 |
|
|
# formatresults expt genmake depend make run results* |
593 |
|
|
|
594 |
|
|
nm=$1 |
595 |
|
|
printf '%s %s %s %s' $2 $3 $4 $5 |
596 |
|
|
shift; shift; shift; shift; shift; |
597 |
|
|
printf '%3s' $@ |
598 |
|
|
|
599 |
|
|
if [ $1 = '--' ]; then |
600 |
|
|
printf ' N/O ' |
601 |
|
|
else |
602 |
|
|
if [ $1 -gt 12 ]; then |
603 |
|
|
printf ' pass' |
604 |
|
|
else |
605 |
|
|
printf ' FAIL' |
606 |
|
|
fi |
607 |
|
|
fi |
608 |
|
|
printf ' %s' $nm |
609 |
|
|
printf '\n' |
610 |
|
|
|
611 |
|
|
} |
612 |
|
|
|
613 |
|
|
show_help() |
614 |
|
|
{ |
615 |
|
|
cat - << EOF |
616 |
|
|
$0 [-help] [-quick] [-verbose] dir1 [dir2] [...] |
617 |
edhill |
1.10 |
|
618 |
|
|
-help|-h Show this help message |
619 |
edhill |
1.1 |
-quiet Reduce the amount of output |
620 |
|
|
-verbose Produce copious amounts of output |
621 |
|
|
-debug Produce even more output which will mean nothing to most |
622 |
|
|
-force Do "make CLEAN" before compiling. This forces a complete rebuild. |
623 |
|
|
-clean Do "make CLEAN" after compiling and testing. |
624 |
|
|
-cleanup Aggresively removes all model output, executables and object files |
625 |
|
|
and then exits. Use with care. |
626 |
|
|
|
627 |
|
|
Normal usage: |
628 |
|
|
$0 * Configure, compile, run and analyze in all experiment directories |
629 |
|
|
EOF |
630 |
|
|
} |
631 |
|
|
|
632 |
|
|
scandirs() |
633 |
|
|
{ |
634 |
|
|
if [ $# -eq 0 ]; then |
635 |
|
|
for arg in * ; do |
636 |
|
|
test -d $arg/input && echo $arg |
637 |
|
|
done |
638 |
|
|
else |
639 |
|
|
echo $* |
640 |
|
|
fi |
641 |
|
|
} |
642 |
|
|
|
643 |
|
|
|
644 |
|
|
############################################################################### |
645 |
|
|
|
646 |
|
|
|
647 |
|
|
# Default properties |
648 |
|
|
debug=0 |
649 |
|
|
verbose=1 |
650 |
|
|
clean=0 |
651 |
|
|
expts='' |
652 |
edhill |
1.6 |
# ieee=1 |
653 |
edhill |
1.10 |
|
654 |
edhill |
1.40 |
IEEE=true |
655 |
edhill |
1.10 |
if test "x$MITGCM_IEEE" != x ; then |
656 |
|
|
IEEE=$MITGCM_IEEE |
657 |
|
|
fi |
658 |
|
|
|
659 |
|
|
|
660 |
|
|
CLEANUP=f |
661 |
|
|
QUICK=f |
662 |
|
|
NOGENMAKE=f |
663 |
|
|
NOCLEAN=f |
664 |
|
|
NODEPEND=f |
665 |
edhill |
1.68 |
POSTCLEAN=f |
666 |
edhill |
1.1 |
|
667 |
edhill |
1.4 |
BASH= |
668 |
edhill |
1.10 |
OPTFILE=NONE |
669 |
|
|
ADDRESSES= |
670 |
edhill |
1.1 |
TESTDIRS= |
671 |
|
|
MPACKDIR="../tools/mpack-1.6" |
672 |
edhill |
1.20 |
HAVE_MPACK= |
673 |
edhill |
1.1 |
MPACK="$MPACKDIR/mpack" |
674 |
edhill |
1.24 |
COMMAND= |
675 |
edhill |
1.59 |
if test "x$MAKE" = x ; then |
676 |
|
|
MAKE=make |
677 |
|
|
fi |
678 |
|
|
if test "x$CC" = x ; then |
679 |
|
|
CC=cc |
680 |
|
|
fi |
681 |
edhill |
1.43 |
JOBS= |
682 |
edhill |
1.7 |
MPI=f |
683 |
jmc |
1.70 |
OUTDIR= |
684 |
edhill |
1.40 |
DELDIR= |
685 |
edhill |
1.1 |
|
686 |
edhill |
1.24 |
ADM= |
687 |
|
|
|
688 |
edhill |
1.49 |
# Additional monitor types |
689 |
edhill |
1.50 |
PTRACERS_NUM="1 2 3 4 5" |
690 |
edhill |
1.49 |
|
691 |
edhill |
1.34 |
printf "parsing options... " |
692 |
edhill |
1.1 |
|
693 |
|
|
ac_prev= |
694 |
|
|
for ac_option ; do |
695 |
|
|
|
696 |
|
|
# If the previous option needs an argument, assign it. |
697 |
|
|
if test -n "$ac_prev"; then |
698 |
|
|
eval "$ac_prev=\$ac_option" |
699 |
|
|
ac_prev= |
700 |
|
|
continue |
701 |
|
|
fi |
702 |
|
|
|
703 |
|
|
ac_optarg=`expr "x$ac_option" : 'x[^=]*=\(.*\)'` |
704 |
|
|
|
705 |
|
|
case $ac_option in |
706 |
|
|
|
707 |
|
|
-help | --help | -h | --h) |
708 |
|
|
usage ;; |
709 |
|
|
|
710 |
edhill |
1.2 |
-optfile | --optfile | -of | --of) |
711 |
edhill |
1.10 |
ac_prev=OPTFILE ;; |
712 |
edhill |
1.2 |
-optfile=* | --optfile=* | -of=* | --of=*) |
713 |
edhill |
1.10 |
OPTFILE=$ac_optarg ;; |
714 |
edhill |
1.1 |
|
715 |
|
|
-addr | --addr | -a | --a) |
716 |
|
|
ac_prev=ADDRESSES ;; |
717 |
|
|
-addr=* | --addr=*) |
718 |
|
|
ADDRESSES=$ac_optarg ;; |
719 |
|
|
|
720 |
|
|
-tdir | --tdir | -t | --t) |
721 |
|
|
ac_prev=TESTDIRS ;; |
722 |
|
|
-tdir=* | --tdir=*) |
723 |
|
|
TESTDIRS=$ac_optarg ;; |
724 |
edhill |
1.4 |
|
725 |
|
|
-bash | --bash | -b | --b) |
726 |
|
|
ac_prev=BASH ;; |
727 |
|
|
-bash=* | --bash=*) |
728 |
|
|
BASH=$ac_optarg ;; |
729 |
edhill |
1.5 |
|
730 |
edhill |
1.6 |
-command | --command | -c | --c) |
731 |
|
|
ac_prev=COMMAND ;; |
732 |
|
|
-command=* | --command=*) |
733 |
|
|
COMMAND=$ac_optarg ;; |
734 |
edhill |
1.8 |
|
735 |
|
|
-make | --make | -m | --m) |
736 |
|
|
ac_prev=MAKE ;; |
737 |
|
|
-make=* | --make=*) |
738 |
|
|
MAKE=$ac_optarg ;; |
739 |
edhill |
1.1 |
|
740 |
jmc |
1.70 |
-odir | --odir) |
741 |
|
|
ac_prev=OUTDIR ;; |
742 |
|
|
-odir=* | --odir=*) |
743 |
|
|
OUTDIR=$ac_optarg ;; |
744 |
|
|
|
745 |
edhill |
1.50 |
-ptracers | --ptracers | -ptr | --ptr) |
746 |
|
|
ac_prev=PTRACERS_NUM ;; |
747 |
|
|
-ptracers=* | --ptracers=* | -ptr=* | --ptr=*) |
748 |
|
|
PTRACERS_NUM=$ac_optarg ;; |
749 |
|
|
|
750 |
edhill |
1.43 |
-j) ac_prev=JOBS ;; |
751 |
|
|
-j=*) JOBS=$ac_optarg ;; |
752 |
|
|
|
753 |
edhill |
1.10 |
-clean | --clean) |
754 |
jmc |
1.69 |
CLEANUP=t ; DELDIR=t ;; |
755 |
edhill |
1.10 |
|
756 |
|
|
-quick | --quick | -q | --q) |
757 |
|
|
QUICK=t ;; |
758 |
|
|
-nogenmake | --nogenmake | -ng | --ng) |
759 |
|
|
NOGENMAKE=t ;; |
760 |
|
|
-noclean | --noclean | -nc | --nc) |
761 |
|
|
NOCLEAN=t ;; |
762 |
|
|
-nodepend | --nodepend | -nd | --nd) |
763 |
|
|
NODEPEND=t ;; |
764 |
|
|
|
765 |
edhill |
1.68 |
-postclean | --postclean | -pc | --pc) |
766 |
|
|
POSTCLEAN=t ;; |
767 |
|
|
|
768 |
edhill |
1.18 |
-mpi) MPI=t ;; |
769 |
edhill |
1.10 |
|
770 |
edhill |
1.24 |
-adm | -ad) ADM=t ;; |
771 |
|
|
|
772 |
edhill |
1.10 |
-ieee) IEEE=true ;; |
773 |
|
|
-noieee) IEEE= ;; |
774 |
|
|
|
775 |
edhill |
1.1 |
-verbose) verbose=2 ;; |
776 |
|
|
-debug) debug=1 ;; |
777 |
|
|
-quiet) verbose=0 ;; |
778 |
|
|
|
779 |
edhill |
1.40 |
-deldir | -dd) DELDIR=t ;; |
780 |
|
|
|
781 |
edhill |
1.1 |
-*) |
782 |
|
|
echo "Error: unrecognized option: "$ac_option |
783 |
|
|
usage |
784 |
|
|
;; |
785 |
|
|
|
786 |
|
|
*) |
787 |
|
|
echo "Error: unrecognized argument: "$ac_option |
788 |
|
|
usage |
789 |
|
|
;; |
790 |
|
|
|
791 |
|
|
esac |
792 |
|
|
|
793 |
|
|
done |
794 |
|
|
|
795 |
edhill |
1.10 |
if test "x$QUICK" = xt ; then |
796 |
|
|
NOGENMAKE=t |
797 |
|
|
NOCLEAN=t |
798 |
|
|
NODEPEND=t |
799 |
|
|
fi |
800 |
|
|
|
801 |
edhill |
1.1 |
if test "x$TESTDIRS" = x ; then |
802 |
|
|
TESTDIRS=`scandirs` |
803 |
|
|
fi |
804 |
|
|
|
805 |
edhill |
1.10 |
if test "x$OPTFILE" = xNONE -a "x$MITGCM_OF" != x ; then |
806 |
|
|
OPTFILE=$MITGCM_OF |
807 |
|
|
fi |
808 |
|
|
|
809 |
edhill |
1.24 |
if test "x$ADM" = xt -a "x$COMMAND" = x ; then |
810 |
|
|
COMMAND="./mitgcmuv_ad > output.txt_adm 2>&1" |
811 |
|
|
fi |
812 |
|
|
|
813 |
|
|
if test "x$COMMAND" = x ; then |
814 |
edhill |
1.45 |
COMMAND="$MAKE output.txt" |
815 |
edhill |
1.24 |
fi |
816 |
|
|
|
817 |
edhill |
1.1 |
echo "OK" |
818 |
|
|
|
819 |
|
|
# create the FORTRAN comparison code |
820 |
|
|
createcodelet |
821 |
|
|
|
822 |
|
|
# build the mpack utility |
823 |
edhill |
1.31 |
if test "x$ADDRESSES" = xNONE -o "x$ADDRESSES" = x ; then |
824 |
edhill |
1.32 |
echo "skipping mpack build" |
825 |
|
|
else |
826 |
edhill |
1.31 |
build_mpack |
827 |
|
|
fi |
828 |
edhill |
1.1 |
|
829 |
|
|
# Create a uniquely named directory to store results |
830 |
|
|
MACH=`hostname` |
831 |
edhill |
1.2 |
UNAMEA=`uname -a` |
832 |
edhill |
1.1 |
DATE=`date +%Y%m%d` |
833 |
edhill |
1.25 |
BASE="tr_"$MACH"_"$DATE"_" |
834 |
jmc |
1.70 |
if test "x$OUTDIR" != x ; then |
835 |
|
|
BASE="tr_"$OUTDIR"_"$DATE"_" |
836 |
|
|
fi |
837 |
edhill |
1.1 |
DNUM=0 |
838 |
|
|
DRESULTS="$BASE$DNUM" |
839 |
|
|
while test -e $DRESULTS ; do |
840 |
|
|
DNUM=$(( $DNUM + 1 )) |
841 |
|
|
DRESULTS="$BASE$DNUM" |
842 |
|
|
done |
843 |
|
|
mkdir $DRESULTS |
844 |
|
|
RETVAL=$? |
845 |
|
|
if test "x$RETVAL" != x0 ; then |
846 |
edhill |
1.20 |
echo "ERROR: Can't create results directory \"./$DRESULTS\"" |
847 |
edhill |
1.1 |
exit 1 |
848 |
|
|
fi |
849 |
|
|
SUMMARY="$DRESULTS/summary.txt" |
850 |
edhill |
1.34 |
printf "Start time: " >> $SUMMARY |
851 |
edhill |
1.16 |
start_date=`date` |
852 |
edhill |
1.17 |
echo $start_date > $SUMMARY |
853 |
edhill |
1.1 |
|
854 |
edhill |
1.11 |
of_path= |
855 |
edhill |
1.10 |
if test "x$OPTFILE" != xNONE ; then |
856 |
|
|
if test -r $OPTFILE ; then |
857 |
edhill |
1.11 |
# get the path |
858 |
|
|
path=${OPTFILE%/*} |
859 |
|
|
if test "x$path" = x ; then |
860 |
|
|
of_path=`pwd` |
861 |
|
|
else |
862 |
|
|
of_path=`( cd $path > /dev/null 2>&1 ; pwd )` |
863 |
|
|
fi |
864 |
|
|
file=${OPTFILE##*/} |
865 |
|
|
OPTFILE=$of_path/$file |
866 |
edhill |
1.21 |
cp $OPTFILE $DRESULTS |
867 |
|
|
echo >> $SUMMARY |
868 |
|
|
echo " OPTFILE=$OPTFILE" >> $SUMMARY |
869 |
edhill |
1.11 |
else |
870 |
edhill |
1.21 |
echo | tee $SUMMARY |
871 |
|
|
echo "ERROR: can't read OPTFILE=\"$OPTFILE\"" | tee $SUMMARY |
872 |
|
|
exit 1 |
873 |
edhill |
1.10 |
fi |
874 |
edhill |
1.21 |
else |
875 |
|
|
echo >> $SUMMARY |
876 |
|
|
echo "No \"OPTFILE\" was explicitly specified by testreport," >> $SUMMARY |
877 |
|
|
echo " so the genmake default will be used." >> $SUMMARY |
878 |
edhill |
1.10 |
fi |
879 |
|
|
echo |
880 |
|
|
echo >> $SUMMARY |
881 |
edhill |
1.24 |
if test "x$ADM" = x ; then |
882 |
edhill |
1.49 |
line_0=" ----T----- ----S----- ----U----- ----V-----" |
883 |
|
|
line_1="G D M c m s m s m s m s" |
884 |
|
|
line_2="E p a R g m m e . m m e . m m e . m m e ." |
885 |
|
|
line_3="N n k u 2 i a a d i a a d i a a d i a a d" |
886 |
|
|
line_4="2 d e n d n x n . n x n . n x n . n x n ." |
887 |
edhill |
1.50 |
for ii in $PTRACERS_NUM ; do |
888 |
edhill |
1.49 |
# tst=`eval 'echo $HAVE_PTR0'$ii` |
889 |
|
|
# if test "x$tst" = xt ; then |
890 |
|
|
line_0="$line_0 --PTR 0"$ii"--" |
891 |
|
|
line_1="$line_1 m s" |
892 |
|
|
line_2="$line_2 m m e ." |
893 |
|
|
line_3="$line_3 i a a d" |
894 |
|
|
line_4="$line_4 n x n ." |
895 |
|
|
# fi |
896 |
|
|
done |
897 |
|
|
echo "$line_0" | tee -a $SUMMARY |
898 |
|
|
echo "$line_1" | tee -a $SUMMARY |
899 |
|
|
echo "$line_2" | tee -a $SUMMARY |
900 |
|
|
echo "$line_3" | tee -a $SUMMARY |
901 |
|
|
echo "$line_4" | tee -a $SUMMARY |
902 |
|
|
echo " " | tee -a $SUMMARY |
903 |
edhill |
1.24 |
else |
904 |
|
|
echo "ADJOINT=true" >> $SUMMARY |
905 |
|
|
echo >> $SUMMARY |
906 |
|
|
cat << EOF | tee -a $SUMMARY |
907 |
|
|
G D M C G |
908 |
|
|
E p a R o r |
909 |
|
|
N n k u s a |
910 |
|
|
2 d e n t d |
911 |
|
|
|
912 |
|
|
EOF |
913 |
|
|
fi |
914 |
edhill |
1.1 |
|
915 |
edhill |
1.10 |
# ...and each test directory... |
916 |
|
|
for dir in $TESTDIRS ; do |
917 |
|
|
|
918 |
|
|
# Cleanup only! |
919 |
|
|
if test "x$CLEANUP" = xt ; then |
920 |
|
|
if test -r $dir/build/Makefile ; then |
921 |
|
|
( cd $dir/build ; make CLEAN ) |
922 |
|
|
fi |
923 |
|
|
if test -r $dir/input/Makefile ; then |
924 |
|
|
( cd $dir/input ; make CLEAN ) |
925 |
|
|
fi |
926 |
edhill |
1.62 |
( |
927 |
|
|
cd $dir |
928 |
|
|
rm -rf tr_run.* |
929 |
|
|
) |
930 |
edhill |
1.10 |
continue |
931 |
edhill |
1.1 |
fi |
932 |
edhill |
1.3 |
|
933 |
edhill |
1.10 |
# Verify that the testdir exists and contains previous |
934 |
|
|
# results in the correct location--or skip this directory! |
935 |
edhill |
1.24 |
fout= |
936 |
|
|
if test "x$ADM" = x ; then |
937 |
|
|
fout=$dir"/results/output.txt" |
938 |
|
|
else |
939 |
|
|
fout=$dir"/results_ad/output.txt_adm" |
940 |
|
|
fi |
941 |
|
|
if test ! -r $fout ; then |
942 |
|
|
echo "can't read \"$fout\" -- skipping $dir" |
943 |
edhill |
1.10 |
continue |
944 |
|
|
fi |
945 |
edhill |
1.53 |
if test "x$ADM" = x ; then |
946 |
|
|
check_for_add_mon_output $fout |
947 |
|
|
fi |
948 |
edhill |
1.7 |
|
949 |
edhill |
1.49 |
# Check for additional types of monitor output |
950 |
|
|
|
951 |
edhill |
1.12 |
builddir="input" |
952 |
|
|
rundir="input" |
953 |
|
|
use_seperate_build=0 |
954 |
|
|
if test -d $dir/build -a -r $dir/build ; then |
955 |
|
|
builddir="build" |
956 |
|
|
rundir="build" |
957 |
|
|
use_seperate_build=1 |
958 |
|
|
linkdata $use_seperate_build $dir/$rundir |
959 |
edhill |
1.10 |
fi |
960 |
|
|
|
961 |
edhill |
1.34 |
# Check whether there are "extra runs" for this testdir |
962 |
|
|
extra_runs= |
963 |
|
|
if test "x$ADM" = x -a "x$use_seperate_build" = x1 ; then |
964 |
|
|
ex_run_dirs=`( cd $dir ; echo input.* )` |
965 |
|
|
echo "ex_run_dirs='$ex_run_dirs'" |
966 |
|
|
for exd in $ex_run_dirs ; do |
967 |
|
|
name=`echo $exd | sed -e 's/input.//g'` |
968 |
|
|
outf="$dir/results/output.txt.$name" |
969 |
|
|
if test -f $outf -a -r $outf ; then |
970 |
|
|
extra_runs="$extra_runs $name" |
971 |
|
|
fi |
972 |
|
|
done |
973 |
|
|
fi |
974 |
|
|
|
975 |
edhill |
1.24 |
if test "x$ADM" = x ; then |
976 |
edhill |
1.27 |
code_dir=code |
977 |
edhill |
1.24 |
CODE_DIR=$dir/code |
978 |
|
|
else |
979 |
edhill |
1.27 |
code_dir=code_ad |
980 |
edhill |
1.24 |
CODE_DIR=$dir/code_ad |
981 |
|
|
fi |
982 |
edhill |
1.10 |
BUILD_DIR=$dir/$builddir |
983 |
edhill |
1.28 |
|
984 |
edhill |
1.30 |
if test ! -r $CODE_DIR"/SIZE.h_mpi" -a "x$MPI" = "xt" ; then |
985 |
edhill |
1.28 |
echo "can't find \"$CODE_DIR/SIZE.h_mpi\" -- skipping $dir" |
986 |
|
|
continue |
987 |
|
|
fi |
988 |
|
|
|
989 |
|
|
echo "-------------------------------------------------------------------------------" |
990 |
|
|
echo |
991 |
|
|
echo "Experiment: $dir" |
992 |
|
|
echo |
993 |
|
|
unset genmake makedepend make run |
994 |
jmc |
1.73 |
results='-- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- --' |
995 |
edhill |
1.10 |
|
996 |
|
|
# Create an output dir for each OPTFILE/tdir combination |
997 |
edhill |
1.20 |
rel_CDIR=$DRESULTS"/"$dir |
998 |
|
|
mkdir $rel_CDIR |
999 |
|
|
CDIR=`pwd`"/$rel_CDIR" |
1000 |
edhill |
1.10 |
|
1001 |
|
|
if test "x$CLEANUP" = xt ; then |
1002 |
|
|
makeclean $dir/$builddir |
1003 |
|
|
else |
1004 |
edhill |
1.1 |
genmakemodel $dir/$builddir && genmake=Y \ |
1005 |
|
|
&& makeclean $dir/$builddir \ |
1006 |
edhill |
1.27 |
&& symlink_mpifiles $dir $code_dir $builddir \ |
1007 |
edhill |
1.1 |
&& makedependmodel $dir/$builddir && makedepend=Y \ |
1008 |
|
|
&& makemodel $dir/$builddir && make=Y \ |
1009 |
edhill |
1.12 |
&& linkdata $use_seperate_build $dir/$rundir \ |
1010 |
|
|
&& runmodel $dir/$rundir && run=Y \ |
1011 |
edhill |
1.1 |
&& results=`testoutput $dir $rundir` |
1012 |
edhill |
1.10 |
fi |
1013 |
|
|
|
1014 |
|
|
echo |
1015 |
edhill |
1.24 |
if test "x$ADM" = x ; then |
1016 |
|
|
fres=`formatresults $dir ${genmake:-N} ${makedepend:-N} ${make:-N} ${run:-N} $results` |
1017 |
edhill |
1.34 |
echo |
1018 |
|
|
echo "$fres" >> $SUMMARY |
1019 |
|
|
echo "fresults='$fres'" > $CDIR"/summary.txt" |
1020 |
|
|
echo "MACH='$MACH'" >> $CDIR"/summary.txt" |
1021 |
|
|
echo "UNAMEA='$UNAMEA'" >> $CDIR"/summary.txt" |
1022 |
|
|
echo "DATE='$DATE'" >> $CDIR"/summary.txt" |
1023 |
|
|
echo "tdir='$dir'" >> $CDIR"/summary.txt" |
1024 |
|
|
|
1025 |
|
|
for ex in $extra_runs ; do |
1026 |
jmc |
1.73 |
unset run |
1027 |
|
|
results='-- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- -- --' |
1028 |
|
|
# Create an output dir for each OPTFILE/tdir.ex combination |
1029 |
|
|
rel_CDIR=$DRESULTS"/"$dir"."$ex |
1030 |
|
|
mkdir $rel_CDIR |
1031 |
|
|
CDIR=`pwd`"/$rel_CDIR" |
1032 |
edhill |
1.61 |
test ! -e "$dir/tr_run.$ex" && mkdir "$dir/tr_run.$ex" |
1033 |
edhill |
1.62 |
for ldir in input.$ex input ; do |
1034 |
edhill |
1.61 |
( |
1035 |
|
|
cd "$dir/$ldir" > /dev/null 2>&1 |
1036 |
|
|
ls -1 2>/dev/null \ |
1037 |
|
|
| sed -e 's|^CVS$||g' | sed -e 's|^output.txt$||g' |
1038 |
|
|
) > tr_exrun_links |
1039 |
|
|
( |
1040 |
|
|
cd "$dir/tr_run.$ex" |
1041 |
|
|
cat ../../tr_exrun_links | while read i ; do |
1042 |
|
|
if test ! "x$i" = x ; then |
1043 |
edhill |
1.62 |
test ! -r $i && ln -s "../"$ldir"/"$i $i |
1044 |
edhill |
1.61 |
fi |
1045 |
|
|
done |
1046 |
|
|
) |
1047 |
|
|
test -e tr_exrun_links && rm -f tr_exrun_links |
1048 |
|
|
done |
1049 |
edhill |
1.62 |
ldir=build |
1050 |
|
|
( |
1051 |
|
|
cd "$dir/$ldir" > /dev/null 2>&1 |
1052 |
edhill |
1.74 |
ls -1 2>/dev/null |
1053 |
|
|
) > tr_exrun_tmp |
1054 |
|
|
echo "Makefile" > tr_exrun_links |
1055 |
|
|
echo "mitgcmuv" >> tr_exrun_links |
1056 |
|
|
cat tr_exrun_tmp | grep '\.[fFhco]$' >> tr_exrun_links |
1057 |
edhill |
1.62 |
( |
1058 |
|
|
cd "$dir/tr_run.$ex" |
1059 |
|
|
cat ../../tr_exrun_links | while read i ; do |
1060 |
|
|
if test ! "x$i" = x ; then |
1061 |
|
|
test ! -r $i && ln -s "../"$ldir"/"$i $i |
1062 |
|
|
fi |
1063 |
|
|
done |
1064 |
|
|
) |
1065 |
edhill |
1.74 |
test -e tr_exrun_tmp && rm -f tr_exrun_tmp |
1066 |
edhill |
1.62 |
test -e tr_exrun_links && rm -f tr_exrun_links |
1067 |
jmc |
1.42 |
runmodel $dir/tr_run.$ex && run=Y \ |
1068 |
|
|
&& results=`testoutput $dir tr_run.$ex "."$ex` |
1069 |
edhill |
1.34 |
fres=`printf '%s %s %s %s' ${genmake:-N} ${makedepend:-N} ${make:-N} ${run:-N}` |
1070 |
|
|
fres=`formatresults $dir ${genmake:-N} ${makedepend:-N} ${make:-N} ${run:-N} $results` |
1071 |
|
|
fres="$fres.$ex" |
1072 |
|
|
echo |
1073 |
|
|
echo "$fres" >> $SUMMARY |
1074 |
|
|
echo "fresults='$fres'" > $CDIR"/summary.txt" |
1075 |
|
|
echo "MACH='$MACH'" >> $CDIR"/summary.txt" |
1076 |
|
|
echo "UNAMEA='$UNAMEA'" >> $CDIR"/summary.txt" |
1077 |
|
|
echo "DATE='$DATE'" >> $CDIR"/summary.txt" |
1078 |
jmc |
1.73 |
echo "tdir='$dir.$ex'" >> $CDIR"/summary.txt" |
1079 |
edhill |
1.34 |
done |
1080 |
edhill |
1.24 |
else |
1081 |
|
|
fres=`printf '%s %s %s %s' ${genmake:-N} ${makedepend:-N} ${make:-N} ${run:-N}` |
1082 |
|
|
fres=$fres"$results $dir" |
1083 |
edhill |
1.34 |
echo |
1084 |
|
|
echo "$fres" >> $SUMMARY |
1085 |
|
|
echo "fresults='$fres'" > $CDIR"/summary.txt" |
1086 |
|
|
echo "MACH='$MACH'" >> $CDIR"/summary.txt" |
1087 |
|
|
echo "UNAMEA='$UNAMEA'" >> $CDIR"/summary.txt" |
1088 |
|
|
echo "DATE='$DATE'" >> $CDIR"/summary.txt" |
1089 |
|
|
echo "tdir='$dir'" >> $CDIR"/summary.txt" |
1090 |
edhill |
1.24 |
fi |
1091 |
edhill |
1.68 |
|
1092 |
|
|
postclean $dir/$builddir |
1093 |
edhill |
1.10 |
|
1094 |
|
|
echo "-------------------------------------------------------------------------------" |
1095 |
|
|
|
1096 |
edhill |
1.1 |
done |
1097 |
|
|
|
1098 |
edhill |
1.34 |
printf "Start time: " >> $SUMMARY |
1099 |
edhill |
1.16 |
echo $start_date >> $SUMMARY |
1100 |
edhill |
1.34 |
printf "End time: " >> $SUMMARY |
1101 |
edhill |
1.13 |
date >> $SUMMARY |
1102 |
edhill |
1.20 |
|
1103 |
|
|
# If addresses were supplied and mpack built successfully, then try |
1104 |
|
|
# to send email using mpack. |
1105 |
|
|
if test "x$ADDRESSES" = xNONE -o "x$ADDRESSES" = x ; then |
1106 |
|
|
echo "No results email was sent." |
1107 |
|
|
else |
1108 |
|
|
if test "x$HAVE_MPACK" = xt ; then |
1109 |
|
|
tar -cf $DRESULTS".tar" $DRESULTS > /dev/null 2>&1 \ |
1110 |
|
|
&& gzip $DRESULTS".tar" \ |
1111 |
edhill |
1.44 |
&& $MPACK -s MITgcm-test -m 3555000 $DRESULTS".tar.gz" $ADDRESSES |
1112 |
edhill |
1.20 |
RETVAL=$? |
1113 |
|
|
if test "x$RETVAL" != x0 ; then |
1114 |
|
|
echo |
1115 |
|
|
echo "Warning: The tar, gzip, & mpack step failed. Please send email" |
1116 |
|
|
echo " to <MITgcm-support@mitgcm.org> for help. You may copy the " |
1117 |
|
|
echo " summary of results from the directory \"$DRESULTS\"." |
1118 |
|
|
echo |
1119 |
|
|
else |
1120 |
|
|
echo |
1121 |
|
|
echo "An email containing results was sent to the following addresses:" |
1122 |
|
|
echo " \"$ADDRESSES\"" |
1123 |
|
|
echo |
1124 |
|
|
fi |
1125 |
|
|
test -f $DRESULTS".tar" && rm -f $DRESULTS".tar" |
1126 |
|
|
test -f $DRESULTS".tar.gz" && rm -f $DRESULTS".tar.gz" |
1127 |
|
|
fi |
1128 |
|
|
fi |
1129 |
edhill |
1.13 |
|
1130 |
edhill |
1.22 |
# rm -f tmp_cmpnum.f a.out |
1131 |
|
|
rm -f tmp_cmpnum.c tmp_cmpnum |
1132 |
edhill |
1.1 |
|
1133 |
edhill |
1.12 |
if test "x$CLEANUP" != xt ; then |
1134 |
jmc |
1.65 |
cat $SUMMARY | sed 's/ -- -- -- --//g' |
1135 |
edhill |
1.25 |
if test -e tr_out.txt ; then |
1136 |
|
|
mv tr_out.txt tr_out.txt.old |
1137 |
edhill |
1.14 |
fi |
1138 |
jmc |
1.65 |
cat $SUMMARY | sed 's/ -- -- -- --//g' > tr_out.txt |
1139 |
edhill |
1.12 |
fi |
1140 |
edhill |
1.1 |
|
1141 |
edhill |
1.40 |
if test "x$DELDIR" = xt ; then |
1142 |
|
|
rm -rf $DRESULTS |
1143 |
|
|
fi |
1144 |
|
|
|