1 |
edhill |
1.19 |
#! /usr/bin/env bash |
2 |
edhill |
1.1 |
# |
3 |
jmc |
1.175 |
# $Header: /u/gcmpack/MITgcm/verification/testreport,v 1.174 2012/06/27 15:20:51 jmc Exp $ |
4 |
edhill |
1.12 |
# $Name: $ |
5 |
edhill |
1.1 |
# |
6 |
|
|
|
7 |
|
|
usage() |
8 |
|
|
{ |
9 |
|
|
echo |
10 |
|
|
echo "Usage: $0 [OPTIONS]" |
11 |
|
|
echo |
12 |
|
|
echo "where possible OPTIONS are:" |
13 |
|
|
echo " (-help|-h) print usage" |
14 |
jmc |
1.122 |
echo " (-mth) run multi-threaded (using eedata.mth)" |
15 |
jmc |
1.154 |
echo " (-mpi) use MPI to compile and run on 2 processors" |
16 |
|
|
echo " (-MPI) NUMBER use MPI to compile and run on max NUMBER procs" |
17 |
jmc |
1.156 |
echo " (-mfile|-mf) STRING MPI: file with list of possible machines to run on" |
18 |
jmc |
1.164 |
echo " (-fast) use optfile default for compiler flags (no '-ieee')" |
19 |
|
|
echo " DEF=off => use IEEE numerics option (if available)" |
20 |
|
|
echo " (-devel) use optfile developement flags (if available)" |
21 |
jmc |
1.109 |
echo " (-gsl) compile with \"-gsl\" flag" |
22 |
jmc |
1.136 |
echo " (-use_r4|-ur4) if allowed, use real*4 type for '_RS' variable" |
23 |
|
|
echo " (-optfile|-of) STRING list of optfiles to use" |
24 |
|
|
echo " (-addr|-a) STRING list of email recipients" |
25 |
jmc |
1.108 |
echo " (DEF=\"\" no email is sent)" |
26 |
jmc |
1.136 |
echo " (-mpackdir|-mpd) DIR location of the mpack utility" |
27 |
jmc |
1.113 |
echo " (DEF=\"../tools/mpack-1.6\")" |
28 |
jmc |
1.136 |
echo " (-tdir|-t) STRING list of group and/or exp. dirs to test" |
29 |
jmc |
1.84 |
echo " (recognized groups: basic, tutorials)" |
30 |
|
|
echo " (DEF=\"\" which test all)" |
31 |
jmc |
1.149 |
echo " (if list= 'start_from THIS_EXP' then" |
32 |
|
|
echo " test THIS_EXP + all the following)" |
33 |
jmc |
1.136 |
echo " (-skipdir|-skd) STRING list of exp. dirs to skip" |
34 |
jmc |
1.89 |
echo " (DEF=\"\" which test all)" |
35 |
jmc |
1.136 |
echo " (-bash|-b) STRING preferred location of a \"bash\" or" |
36 |
edhill |
1.20 |
echo " Bourne-compatible \"sh\" shell" |
37 |
|
|
echo " (DEF=\"\" for \"bash\")" |
38 |
jmc |
1.175 |
echo " (-tlm) perform a Tangent Linear run" |
39 |
edhill |
1.24 |
echo " (-adm|-ad) perform an adjoint run" |
40 |
utke |
1.120 |
echo " (-oad) perform an OpenAD adjoint run" |
41 |
jmc |
1.136 |
echo " (-command|-c) STRING command to run" |
42 |
jmc |
1.141 |
echo " (-makedepend|-md) STRING command to use for \"makedepend\"" |
43 |
jmc |
1.136 |
echo " (-make|-m) STRING command to use for \"make\"" |
44 |
edhill |
1.8 |
echo " (DEF=\"make\")" |
45 |
jmc |
1.70 |
echo " (-odir) STRING used to build output directory name" |
46 |
|
|
echo " (DEF=\"hostname\")" |
47 |
jmc |
1.156 |
# echo " (-ptracers|-ptr) STRING specify which ptracers to test" |
48 |
|
|
# echo " (DEF=\"1 2 3 4 5\")" |
49 |
jmc |
1.92 |
echo " (-match) NUMBER Matching Criteria (number of digits)" |
50 |
jmc |
1.141 |
echo " (DEF=\"$MATCH_CRIT\")" |
51 |
edhill |
1.43 |
echo " (-j) JOBS use \"make -j JOBS\" for parallel builds" |
52 |
jmc |
1.165 |
echo " (-ef) STRING used as genmake2 \"-extra_flag\" argument" |
53 |
jmc |
1.156 |
echo " (-clean) *ONLY* run \"make CLEAN\" & clean run-dir" |
54 |
jmc |
1.133 |
echo " (-norun|-nr) skip the \"runmodel\" stage (stop after make)" |
55 |
jmc |
1.165 |
echo " (-obj) only produces objects (=norun & no executable)" |
56 |
jmc |
1.136 |
echo " (-runonly|-ro) *ONLY* run stage (=\"-quick\" without make)" |
57 |
ce107 |
1.90 |
echo " (-quick|-q) same as \"-nogenmake -noclean -nodepend\"" |
58 |
|
|
echo " (-nogenmake|-ng) skip the genmake stage" |
59 |
|
|
echo " (-noclean|-nc) skip the \"make clean\" stage" |
60 |
|
|
echo " (-nodepend|-nd) skip the \"make depend\" stage" |
61 |
jmc |
1.156 |
echo " (-postclean|-pc) after each exp. test, clean build-dir & run-dir" |
62 |
|
|
echo " (-deloutp|-do) delete output files after successful run" |
63 |
ce107 |
1.90 |
echo " (-deldir|-dd) on success, delete the output directory" |
64 |
|
|
echo " (-ts) provide timing information per timestep" |
65 |
|
|
echo " (-papis) provide MFlop/s per timestep using PAPI" |
66 |
|
|
echo " (-pcls) provide MFlop/s per timestep using PCL" |
67 |
edhill |
1.6 |
echo |
68 |
edhill |
1.50 |
echo "and where STRING can be a whitespace-delimited list" |
69 |
edhill |
1.6 |
echo "such as:" |
70 |
edhill |
1.50 |
echo |
71 |
edhill |
1.6 |
echo " -t 'exp0 exp2 exp3' " |
72 |
|
|
echo " -addr='abc@123.com testing@home.org'" |
73 |
edhill |
1.1 |
echo |
74 |
edhill |
1.50 |
echo "provided that the expression is properly quoted within the current" |
75 |
|
|
echo "shell (note the use of single quotes to protect white space)." |
76 |
|
|
echo |
77 |
edhill |
1.1 |
exit 1 |
78 |
|
|
} |
79 |
|
|
|
80 |
|
|
# build the mpack utility |
81 |
|
|
build_mpack() |
82 |
|
|
{ |
83 |
edhill |
1.34 |
printf "building the mpack utility... " |
84 |
jmc |
1.113 |
MPACK="$MPACKDIR/mpack" |
85 |
|
|
if test ! -x $MPACK ; then |
86 |
edhill |
1.1 |
if test ! -d $MPACKDIR ; then |
87 |
edhill |
1.20 |
echo |
88 |
edhill |
1.1 |
echo "Error: can't find \"$MPACKDIR\"" |
89 |
|
|
echo " are you sure this program is being run in the correct " |
90 |
|
|
echo " (that is, \"MITGCM_ROOT\verification\") directory?" |
91 |
edhill |
1.20 |
echo |
92 |
|
|
HAVE_MPACK=f |
93 |
edhill |
1.1 |
fi |
94 |
edhill |
1.26 |
if test "x$CC" = x ; then |
95 |
|
|
export CC=cc |
96 |
|
|
fi |
97 |
jmc |
1.112 |
printf "building mpack (using CC=$CC)... " |
98 |
edhill |
1.25 |
( cd $MPACKDIR && ./configure && $MAKE ) > tr_build_mpack.out 2>&1 |
99 |
edhill |
1.1 |
RETVAL=$? |
100 |
|
|
if test "x$RETVAL" != x0 ; then |
101 |
|
|
echo |
102 |
|
|
echo "Error building the mpack tools at: $MPACK_DIR" |
103 |
edhill |
1.20 |
echo |
104 |
|
|
HAVE_MPACK=f |
105 |
|
|
else |
106 |
edhill |
1.25 |
rm -f tr_build_mpack.out |
107 |
edhill |
1.20 |
HAVE_MPACK=t |
108 |
jmc |
1.113 |
echo "done" |
109 |
edhill |
1.1 |
fi |
110 |
edhill |
1.20 |
else |
111 |
|
|
HAVE_MPACK=t |
112 |
jmc |
1.113 |
echo "already exist" |
113 |
edhill |
1.1 |
fi |
114 |
|
|
} |
115 |
|
|
|
116 |
jmc |
1.93 |
testoutput_var() |
117 |
edhill |
1.1 |
{ |
118 |
jmc |
1.99 |
# testoutput_var dir s1 label subdir reference_output |
119 |
edhill |
1.1 |
# |
120 |
jmc |
1.135 |
# compares 1 variable output selected from file $dir/$subdir/$OUTPUTFILE |
121 |
jmc |
1.175 |
# with same output from reference file $dir/$reference_output |
122 |
jmc |
1.93 |
# using search strings s1 and text label |
123 |
edhill |
1.1 |
|
124 |
|
|
if [ $debug -gt 0 ]; then |
125 |
jmc |
1.93 |
echo testoutput_var: grep "$2" $1/$4/$OUTPUTFILE 1>&2 |
126 |
edhill |
1.1 |
fi |
127 |
jmc |
1.87 |
if [ -r $1/$4/$OUTPUTFILE ]; then |
128 |
|
|
grep "$2" $1/$4/$OUTPUTFILE | sed 's/.*=//' | cat -n > tmp1.txt |
129 |
jmc |
1.67 |
lncntA=`wc -l tmp1.txt | awk '{print $1}' ` |
130 |
jmc |
1.100 |
if [ $lncntA -lt 2 ]; then |
131 |
edhill |
1.1 |
if [ $verbose -gt 0 ]; then |
132 |
|
|
echo Not enough lines of output when searching for "$2" 1>&2 |
133 |
|
|
fi |
134 |
jmc |
1.175 |
rm -f tmp1.txt ; return 99 |
135 |
edhill |
1.1 |
fi |
136 |
|
|
else |
137 |
jmc |
1.93 |
echo testoutput_var: $OUTPUTFILE from model run was not readable 1>&2 |
138 |
edhill |
1.1 |
return 99 |
139 |
|
|
fi |
140 |
|
|
if [ $debug -gt 0 ]; then |
141 |
jmc |
1.175 |
echo testoutput_var: grep "$2" $1/$5 1>&2 |
142 |
edhill |
1.1 |
fi |
143 |
jmc |
1.175 |
grep "$2" $1/$5 | sed 's/.*=//' | cat -n > tmp2.txt |
144 |
jmc |
1.67 |
lncntB=`wc -l tmp2.txt | awk '{print $1}' ` |
145 |
jmc |
1.100 |
if [ $lncntB -lt 2 ]; then |
146 |
edhill |
1.1 |
if [ $verbose -gt 0 ]; then |
147 |
|
|
echo Not enough lines of output when searching for "$2" 1>&2 |
148 |
|
|
fi |
149 |
jmc |
1.175 |
rm -f tmp1.txt tmp2.txt ; return 99 |
150 |
edhill |
1.1 |
fi |
151 |
jmc |
1.67 |
if [ $lncntA -ne $lncntB ]; then |
152 |
jmc |
1.175 |
if [ $verbose -gt 0 ]; then |
153 |
|
|
echo Not same Nb of lines when searching for "$2" ":" $lncntA $lncntB 1>&2 |
154 |
|
|
fi |
155 |
|
|
rm -f tmp1.txt tmp2.txt ; return 99 |
156 |
jmc |
1.67 |
fi |
157 |
edhill |
1.72 |
has_nan=`cat tmp1.txt | grep -i nan | wc -l` |
158 |
|
|
if [ $has_nan -gt 0 ] ; then |
159 |
jmc |
1.93 |
echo testoutput_var: $OUTPUTFILE contains $has_nan NaN values 1>&2 |
160 |
jmc |
1.175 |
rm -f tmp1.txt tmp2.txt ; return 99 |
161 |
edhill |
1.72 |
fi |
162 |
|
|
has_inf=`cat tmp1.txt | grep -i inf | wc -l` |
163 |
|
|
if [ $has_inf -gt 0 ] ; then |
164 |
jmc |
1.93 |
echo testoutput_var: $OUTPUTFILE contains $has_inf Inf values 1>&2 |
165 |
jmc |
1.175 |
rm -f tmp1.txt tmp2.txt ; return 99 |
166 |
jmc |
1.71 |
fi |
167 |
edhill |
1.1 |
if [ $debug -gt 0 ]; then |
168 |
jmc |
1.93 |
echo testoutput_var: join tmp1.txt tmp2.txt 1>&2 |
169 |
edhill |
1.1 |
fi |
170 |
|
|
join tmp1.txt tmp2.txt | awk '{print $1 " " $2 " " $3}' > tmp3.txt |
171 |
|
|
if [ $debug -gt 0 ]; then |
172 |
jmc |
1.93 |
echo testoutput_var: compare_lines 1>&2 |
173 |
edhill |
1.1 |
fi |
174 |
edhill |
1.22 |
if [ $verbose -gt 1 ]; then |
175 |
|
|
cat tmp3.txt 1>&2 |
176 |
|
|
fi |
177 |
|
|
echo "-1" >> tmp3.txt |
178 |
edhill |
1.23 |
# On the SGI O3K (*not* the O2K), "cat -n" inserts a ":" after the line number |
179 |
|
|
cat tmp3.txt | sed -e 's|:||g' > tmp4.txt |
180 |
jmc |
1.91 |
digits_of_similarity=`./tr_cmpnum < tmp4.txt` |
181 |
edhill |
1.1 |
if [ $digits_of_similarity -eq 99 ]; then |
182 |
|
|
if [ $verbose -gt 0 ]; then |
183 |
jmc |
1.99 |
echo testoutput_var: No comparison was available for \"$3\" 1>&2 |
184 |
edhill |
1.1 |
fi |
185 |
|
|
digits_of_similarity=99 |
186 |
|
|
else |
187 |
|
|
if [ $verbose -gt 0 ]; then |
188 |
jmc |
1.99 |
echo There were $digits_of_similarity decimal places of similarity for \"$3\" 1>&2 |
189 |
edhill |
1.1 |
fi |
190 |
|
|
fi |
191 |
edhill |
1.23 |
rm -f tmp1.txt tmp2.txt tmp3.txt tmp4.txt |
192 |
jmc |
1.135 |
|
193 |
edhill |
1.1 |
return $digits_of_similarity |
194 |
|
|
} |
195 |
|
|
|
196 |
jmc |
1.93 |
testoutput_run() |
197 |
edhill |
1.1 |
{ |
198 |
jmc |
1.99 |
# testoutput_run directory subdir reference_output |
199 |
edhill |
1.1 |
# |
200 |
jmc |
1.93 |
# test output from 1 run in "directory" |
201 |
jmc |
1.103 |
# --> same processing for adjoint & forward test |
202 |
jmc |
1.175 |
# default list of output variables to be checked: |
203 |
|
|
# 1rst : main variable used to decide if it pass or FAIL |
204 |
|
|
# others : number of matching digits to be printed in summary.txt |
205 |
|
|
listChk=$DEF_CHECK_LIST |
206 |
jmc |
1.94 |
# load experiment-specific list from file "tr_checklist" (if it exist) |
207 |
jmc |
1.175 |
if test -r $1/$2/tr_checklist ; then listChk=`cat $1/$2/tr_checklist` ; fi |
208 |
|
|
sVar=`echo $listChk | awk '{print $1}'` |
209 |
|
|
# remove 1rst var and expand the list: + => min max mean s.d |
210 |
|
|
listVar=`echo $listChk | sed 's/ [a-zA-Z0-9]*+/&mn &mx &av &sd/g' \ |
211 |
|
|
| sed 's/+//g' | sed "s/^$sVar//"` |
212 |
jmc |
1.94 |
if [ $debug -gt 0 ]; then echo "testoutput_run: listVar(I)='$listVar'" 1>&2 ; fi |
213 |
jmc |
1.175 |
# set ref.outp file-name and, if compressed, uncompress it into subdir |
214 |
|
|
refoutp=results/$3 |
215 |
|
|
if test ! -r $1/results/$3 ; then |
216 |
|
|
if test -r $1/results/${3}.gz ; then |
217 |
|
|
tmpNam1=$3 |
218 |
|
|
tmpNam2=`echo $tmpNam1 | sed 's/\..*\././'` |
219 |
|
|
if test "x$tmpNam1" = "x$tmpNam2" ; then |
220 |
|
|
tmpNam1=`echo $tmpNam2 | sed 's/\./.std./'` |
221 |
|
|
fi |
222 |
|
|
refoutp=$2/$tmpNam1 |
223 |
|
|
if [ $debug -gt 0 ]; then |
224 |
|
|
echo "testoutput_run: gunzip 'results/$3.gz' into '$refoutp'" 1>&2 |
225 |
|
|
fi |
226 |
|
|
gzip -cd $1/results/${3}.gz > $1/$refoutp |
227 |
|
|
else |
228 |
|
|
echo "missing reference output file '$3' (.gz) in '$1/results/'" |
229 |
|
|
fi |
230 |
|
|
fi |
231 |
|
|
# check for ptracer output in reference_output file : |
232 |
|
|
if test $KIND = 0 ; then |
233 |
|
|
ptr_mon="trcstat_ptracerXX_min trcstat_ptracerXX_max" |
234 |
|
|
ptr_mon="$ptr_mon trcstat_ptracerXX_mean trcstat_ptracerXX_sd" |
235 |
|
|
for ii in $PTRACERS_NUM ; do |
236 |
jmc |
1.117 |
ptrfound=0 |
237 |
|
|
for jj in $ptr_mon ; do |
238 |
|
|
name=`eval "echo $jj | sed -e 's|XX|0"$ii"|g'"` |
239 |
jmc |
1.175 |
tst=`grep $name $1/$refoutp | wc -l | awk '{print $1}'` |
240 |
jmc |
1.117 |
if test ! "x$tst" = x0 ; then ptrfound=1 ; fi |
241 |
|
|
done |
242 |
|
|
if test $ptrfound = '1' ; then |
243 |
|
|
eval "HAVE_PTR0"$ii"=t" |
244 |
|
|
else |
245 |
|
|
eval "HAVE_PTR0"$ii"=f" |
246 |
|
|
# remove this ptr from the list of output variable to check |
247 |
|
|
# echo "-- ptr test=" $tst "number of var=" `echo $listVar | awk '{print NF}'` 1>&2 |
248 |
|
|
listVar=`echo "$listVar" | sed "s/ pt$ii..//g"` |
249 |
|
|
fi |
250 |
jmc |
1.175 |
# eval 'echo "HAVE_PTR0'$ii' = $HAVE_PTR0'$ii'"' 1>&2 |
251 |
|
|
done |
252 |
|
|
fi |
253 |
|
|
tst=`echo $sVar $listVar | awk '{ for(i=2;i<=NF;i++){if($i==$1)t+=1}; print t }'` |
254 |
|
|
if test $tst != 1 ; then |
255 |
|
|
if test $tst = 0 ; then echo "==> WARNING: selected var >$sVar< not found" 1>&2 |
256 |
|
|
else echo "==> WARNING: found selected var >$sVar< $tst times" 1>&2 ; fi |
257 |
|
|
echo "==> WARNING: in checked list:" $listVar 1>&2 |
258 |
|
|
#- put it back once: |
259 |
|
|
listVar=" $sVar "`echo "$listVar " | sed "s/ $sVar / /g"` |
260 |
|
|
fi |
261 |
jmc |
1.94 |
if [ $debug -gt 0 ]; then echo "testoutput_run: listVar(M)='$listVar'" 1>&2 ; fi |
262 |
jmc |
1.154 |
echo "listVar='$listVar'" >> $locDIR"/summary.txt" |
263 |
jmc |
1.175 |
#--- |
264 |
|
|
allargs="" |
265 |
|
|
for xx in $listVar |
266 |
|
|
do |
267 |
|
|
case $xx in |
268 |
jmc |
1.94 |
'PS') if [ $debug -gt 0 ] |
269 |
|
|
then echo testoutput_run: testoutput_var $1 cg2d_init_res 1>&2 ; fi |
270 |
jmc |
1.175 |
testoutput_var $1 "cg2d_init_res" "Press. Solver (cg2d)" $2 $refoutp ; yy=$? |
271 |
jmc |
1.94 |
if [ $debug -gt 0 ] ; then echo testoutput_run: cg2dres=$yy 1>&2 ; fi ;; |
272 |
jmc |
1.175 |
'Cost') testoutput_var $1 "ADM ref_cost_function" "ADM CostFct" $2 $refoutp ; yy=$? ;; |
273 |
|
|
'AdGrd') testoutput_var $1 "ADM adjoint_gradient" "ADM Ad Grad" $2 $refoutp ; yy=$? ;; |
274 |
|
|
'FDGrd') testoutput_var $1 "ADM finite-diff_grad" "ADM FD Grad" $2 $refoutp ; yy=$? ;; |
275 |
|
|
'tlmCst') testoutput_var $1 "TLM ref_cost_function" "TLM CostFct" $2 $refoutp ; yy=$? ;; |
276 |
|
|
'tlmGrd') testoutput_var $1 "TLM tangent-lin_grad" "TLM TL Grad" $2 $refoutp ; yy=$? ;; |
277 |
|
|
'fwdGrd') testoutput_var $1 "TLM finite-diff_grad" "TLM FD Grad" $2 $refoutp ; yy=$? ;; |
278 |
|
|
'Tmn') testoutput_var $1 "dynstat_theta_min" "Theta minimum" $2 $refoutp ; yy=$? ;; |
279 |
|
|
'Tmx') testoutput_var $1 "dynstat_theta_max" "Theta maximum" $2 $refoutp ; yy=$? ;; |
280 |
|
|
'Tav') testoutput_var $1 "dynstat_theta_mean" "Theta mean" $2 $refoutp ; yy=$? ;; |
281 |
|
|
'Tsd') testoutput_var $1 "dynstat_theta_sd" "Theta Std.Dev" $2 $refoutp ; yy=$? ;; |
282 |
|
|
'Smn') testoutput_var $1 "dynstat_salt_min" "Salt minimum" $2 $refoutp ; yy=$? ;; |
283 |
|
|
'Smx') testoutput_var $1 "dynstat_salt_max" "Salt maximum" $2 $refoutp ; yy=$? ;; |
284 |
|
|
'Sav') testoutput_var $1 "dynstat_salt_mean" "Salt mean" $2 $refoutp ; yy=$? ;; |
285 |
|
|
'Ssd') testoutput_var $1 "dynstat_salt_sd" "Salt Std.Dev" $2 $refoutp ; yy=$? ;; |
286 |
|
|
'Umn') testoutput_var $1 "dynstat_uvel_min" "U minimum" $2 $refoutp ; yy=$? ;; |
287 |
|
|
'Umx') testoutput_var $1 "dynstat_uvel_max" "U maximum" $2 $refoutp ; yy=$? ;; |
288 |
|
|
'Uav') testoutput_var $1 "dynstat_uvel_mean" "U mean" $2 $refoutp ; yy=$? ;; |
289 |
|
|
'Usd') testoutput_var $1 "dynstat_uvel_sd" "U Std.Dev" $2 $refoutp ; yy=$? ;; |
290 |
|
|
'Vmn') testoutput_var $1 "dynstat_vvel_min" "V minimum" $2 $refoutp ; yy=$? ;; |
291 |
|
|
'Vmx') testoutput_var $1 "dynstat_vvel_max" "V maximum" $2 $refoutp ; yy=$? ;; |
292 |
|
|
'Vav') testoutput_var $1 "dynstat_vvel_mean" "V mean" $2 $refoutp ; yy=$? ;; |
293 |
|
|
'Vsd') testoutput_var $1 "dynstat_vvel_sd" "V Std.Dev" $2 $refoutp ; yy=$? ;; |
294 |
jmc |
1.94 |
'pt1mn'|'pt2mn'|'pt3mn'|'pt4mn'|'pt5mn') ii=`echo $xx | sed 's/pt//' | sed 's/..$//'` |
295 |
jmc |
1.175 |
testoutput_var $1 "trcstat_ptracer0"$ii"_min" "p0"$ii"_min" $2 $refoutp ; yy=$? ;; |
296 |
jmc |
1.94 |
'pt1mx'|'pt2mx'|'pt3mx'|'pt4mx'|'pt5mx') ii=`echo $xx | sed 's/pt//' | sed 's/..$//'` |
297 |
jmc |
1.175 |
testoutput_var $1 "trcstat_ptracer0"$ii"_max" "p0"$ii"_max" $2 $refoutp ; yy=$? ;; |
298 |
jmc |
1.94 |
'pt1av'|'pt2av'|'pt3av'|'pt4av'|'pt5av') ii=`echo $xx | sed 's/pt//' | sed 's/..$//'` |
299 |
jmc |
1.175 |
testoutput_var $1 "trcstat_ptracer0"$ii"_mean" "p0"$ii"_mean" $2 $refoutp ; yy=$? ;; |
300 |
jmc |
1.94 |
'pt1sd'|'pt2sd'|'pt3sd'|'pt4sd'|'pt5sd') ii=`echo $xx | sed 's/pt//' | sed 's/..$//'` |
301 |
jmc |
1.175 |
testoutput_var $1 "trcstat_ptracer0"$ii"_sd" "p0"$ii"_StDv" $2 $refoutp ; yy=$? ;; |
302 |
|
|
'Qntmn') testoutput_var $1 "forcing_qnet_min" "Qnet minimum" $2 $refoutp ; yy=$? ;; |
303 |
|
|
'Qntmx') testoutput_var $1 "forcing_qnet_max" "Qnet maximum" $2 $refoutp ; yy=$? ;; |
304 |
|
|
'Qntav') testoutput_var $1 "forcing_qnet_mean" "Qnet mean" $2 $refoutp ; yy=$? ;; |
305 |
|
|
'Qntsd') testoutput_var $1 "forcing_qnet_sd" "Qnet Std.Dev" $2 $refoutp ; yy=$? ;; |
306 |
|
|
'aSImn') testoutput_var $1 "seaice_area_min" "SIce Area min" $2 $refoutp ; yy=$? ;; |
307 |
|
|
'aSImx') testoutput_var $1 "seaice_area_max" "SIce Area max" $2 $refoutp ; yy=$? ;; |
308 |
|
|
'aSIav') testoutput_var $1 "seaice_area_mean" "SIce Area mean" $2 $refoutp ; yy=$? ;; |
309 |
|
|
'aSIsd') testoutput_var $1 "seaice_area_sd" "SIce Area StDv" $2 $refoutp ; yy=$? ;; |
310 |
|
|
'hSImn') testoutput_var $1 "seaice_heff_min" "SIce Heff min" $2 $refoutp ; yy=$? ;; |
311 |
|
|
'hSImx') testoutput_var $1 "seaice_heff_max" "SIce Heff max" $2 $refoutp ; yy=$? ;; |
312 |
|
|
'hSIav') testoutput_var $1 "seaice_heff_mean" "SIce Heff mean" $2 $refoutp ; yy=$? ;; |
313 |
|
|
'hSIsd') testoutput_var $1 "seaice_heff_sd" "SIce Heff StDv" $2 $refoutp ; yy=$? ;; |
314 |
|
|
'uSImn') testoutput_var $1 "seaice_uice_min" "SIce Uice min" $2 $refoutp ; yy=$? ;; |
315 |
|
|
'uSImx') testoutput_var $1 "seaice_uice_max" "SIce Uice max" $2 $refoutp ; yy=$? ;; |
316 |
|
|
'uSIav') testoutput_var $1 "seaice_uice_mean" "SIce Uice mean" $2 $refoutp ; yy=$? ;; |
317 |
|
|
'uSIsd') testoutput_var $1 "seaice_uice_sd" "SIce Uice StDv" $2 $refoutp ; yy=$? ;; |
318 |
|
|
'vSImn') testoutput_var $1 "seaice_vice_min" "SIce Vice min" $2 $refoutp ; yy=$? ;; |
319 |
|
|
'vSImx') testoutput_var $1 "seaice_vice_max" "SIce Vice max" $2 $refoutp ; yy=$? ;; |
320 |
|
|
'vSIav') testoutput_var $1 "seaice_vice_mean" "SIce Vice mean" $2 $refoutp ; yy=$? ;; |
321 |
|
|
'vSIsd') testoutput_var $1 "seaice_vice_sd" "SIce Vice StDv" $2 $refoutp ; yy=$? ;; |
322 |
|
|
'AthSiG') testoutput_var $1 "thSI_Ice_Area_G" "thSIc Area Global" $2 $refoutp ; yy=$? ;; |
323 |
|
|
'AthSiS') testoutput_var $1 "thSI_Ice_Area_S" "thSIc Area South" $2 $refoutp ; yy=$? ;; |
324 |
|
|
'AthSiN') testoutput_var $1 "thSI_Ice_Area_N" "thSIc Area North" $2 $refoutp ; yy=$? ;; |
325 |
|
|
'HthSiG') testoutput_var $1 "thSI_IceH_ave_G" "thSIc H Global" $2 $refoutp ; yy=$? ;; |
326 |
|
|
'HthSiS') testoutput_var $1 "thSI_IceH_ave_S" "thSIc H South" $2 $refoutp ; yy=$? ;; |
327 |
|
|
'HthSiN') testoutput_var $1 "thSI_IceH_ave_N" "thSIc H North" $2 $refoutp ; yy=$? ;; |
328 |
|
|
*) yy=99; echo "WARNING: asking for var=$xx : not recognized !" 1>&2 ;; |
329 |
|
|
esac |
330 |
|
|
if test $xx = $sVar |
331 |
|
|
then allargs="$allargs > $yy <" |
332 |
|
|
else allargs="$allargs $yy" |
333 |
|
|
fi |
334 |
|
|
done |
335 |
jmc |
1.94 |
|
336 |
|
|
nbVar=`echo $listVar | awk '{print NF}'` |
337 |
jmc |
1.175 |
if [ $nbVar -lt $LEN_CHECK_LIST ] ; then |
338 |
|
|
#-- fill line (up to standard length) with dot: |
339 |
|
|
adNul=`expr $LEN_CHECK_LIST - $nbVar | awk '{for(i=1;i<=$1;i++){print "."}}'` |
340 |
jmc |
1.94 |
echo $allargs $adNul |
341 |
jmc |
1.175 |
else |
342 |
jmc |
1.94 |
echo $allargs |
343 |
jmc |
1.135 |
fi |
344 |
jmc |
1.103 |
# <-- same processing for adjoint & forward test |
345 |
edhill |
1.1 |
} |
346 |
|
|
|
347 |
|
|
genmakemodel() |
348 |
|
|
{ |
349 |
|
|
# genmakemodel directory |
350 |
edhill |
1.10 |
if test "x$NOGENMAKE" = xt ; then |
351 |
|
|
echo "genmake skipped!" |
352 |
|
|
else |
353 |
edhill |
1.34 |
if test "x$BASH" = x ; then |
354 |
|
|
GENMAKE2="../../../tools/genmake2" |
355 |
|
|
else |
356 |
|
|
GENMAKE2="$BASH ../../../tools/genmake2 -bash $BASH" |
357 |
|
|
fi |
358 |
edhill |
1.10 |
( |
359 |
|
|
cd $1; |
360 |
edhill |
1.24 |
command="$GENMAKE2 -ds -m $MAKE" |
361 |
jmc |
1.141 |
if test "x$MKDEPEND" != x ; then |
362 |
|
|
command="$command -makedepend=$MKDEPEND" |
363 |
|
|
fi |
364 |
jmc |
1.175 |
if test $KIND = 1 -o $KIND = 2 ; then |
365 |
utke |
1.120 |
command="$command --mods=../code_ad" |
366 |
jmc |
1.175 |
elif test $KIND = 4 ; then |
367 |
utke |
1.120 |
command="$command -adof ../../../tools/adjoint_options/adjoint_oad -mods '../code_oad ../../OpenAD/code_oad_all'" |
368 |
|
|
else |
369 |
jmc |
1.124 |
command="$command -mods=../code" |
370 |
edhill |
1.24 |
fi |
371 |
edhill |
1.10 |
if test "x$OPTFILE" != xNONE ; then |
372 |
jmc |
1.124 |
command="$command -optfile=$OPTFILE" |
373 |
edhill |
1.10 |
fi |
374 |
jmc |
1.164 |
if test $OptLev = 1 ; then |
375 |
jmc |
1.175 |
command="$command -ieee" |
376 |
|
|
fi |
377 |
jmc |
1.164 |
if test $OptLev = 0 ; then |
378 |
|
|
command="$command -devel" |
379 |
edhill |
1.10 |
fi |
380 |
jmc |
1.109 |
if test "x$GSL" = xt ; then |
381 |
|
|
command="$command -gsl" |
382 |
|
|
fi |
383 |
jmc |
1.154 |
if test "x$MPI" != x0 ; then |
384 |
edhill |
1.66 |
command="$command -mpi" |
385 |
|
|
fi |
386 |
jmc |
1.122 |
if test "x$MULTI_THREAD" = xt ; then |
387 |
|
|
#- run multi-threaded using OpenMP: |
388 |
|
|
command="$command -omp" |
389 |
|
|
fi |
390 |
jmc |
1.135 |
if test "x$USE_R4" = xt ; then |
391 |
|
|
command="$command -use_r4" |
392 |
|
|
fi |
393 |
jmc |
1.165 |
if test "x$EXTRFLG" != x ; then |
394 |
|
|
command="$command -extra_flag $EXTRFLG" |
395 |
|
|
fi |
396 |
ce107 |
1.90 |
if test "x$TS" = xt ; then |
397 |
|
|
command="$command -ts" |
398 |
|
|
fi |
399 |
|
|
if test "x$PAPIS" = xt ; then |
400 |
|
|
command="$command -papis" |
401 |
jmc |
1.135 |
else |
402 |
ce107 |
1.90 |
if test "x$PCLS" = xt ; then |
403 |
|
|
command="$command -pcls" |
404 |
|
|
fi |
405 |
|
|
fi |
406 |
jmc |
1.139 |
printf 'genmake ... ' |
407 |
jmc |
1.146 |
eval $command > genmake.tr_log 2>&1 |
408 |
edhill |
1.10 |
RETVAL=$? |
409 |
edhill |
1.44 |
# Reduce the size of the testing emails! |
410 |
edhill |
1.47 |
head -100 Makefile > $CDIR/Makefile_head |
411 |
edhill |
1.10 |
if test "x$RETVAL" != x0 ; then |
412 |
jmc |
1.146 |
tail genmake.tr_log |
413 |
jmc |
1.139 |
echo "genmakemodel: genmake failed" |
414 |
jmc |
1.148 |
cp genmake.log genmake_* genmake.tr_log $CDIR |
415 |
edhill |
1.10 |
return 1 |
416 |
|
|
else |
417 |
jmc |
1.139 |
echo "successful" |
418 |
edhill |
1.1 |
fi |
419 |
edhill |
1.10 |
) |
420 |
|
|
fi |
421 |
edhill |
1.1 |
} |
422 |
|
|
|
423 |
|
|
makeclean() |
424 |
|
|
{ |
425 |
|
|
# makeclean directory |
426 |
jmc |
1.146 |
if test "x$NODEPEND" = xf ; then rm -f $1/make.tr_log ; fi |
427 |
edhill |
1.10 |
if test "x$NOCLEAN" = xt ; then |
428 |
jmc |
1.83 |
echo "make Clean skipped!" |
429 |
edhill |
1.10 |
else |
430 |
|
|
( |
431 |
|
|
cd $1; |
432 |
jmc |
1.87 |
#if test -e $OUTPUTFILE ; then rm -f $OUTPUTFILE ; fi |
433 |
edhill |
1.10 |
if test -r Makefile ; then |
434 |
jmc |
1.139 |
printf 'clean build-dir: make Clean ... ' |
435 |
jmc |
1.146 |
$MAKE Clean >> make.tr_log 2>&1 |
436 |
edhill |
1.10 |
RETVAL=$? |
437 |
|
|
if test "x$RETVAL" != x0 ; then |
438 |
jmc |
1.146 |
tail make.tr_log |
439 |
jmc |
1.139 |
echo "makeclean: \"make Clean\" failed" |
440 |
jmc |
1.148 |
cp make.tr_log genmake.log genmake.tr_log $CDIR |
441 |
edhill |
1.10 |
return 1 |
442 |
|
|
fi |
443 |
jmc |
1.139 |
echo successful |
444 |
jmc |
1.127 |
else |
445 |
|
|
echo '' |
446 |
edhill |
1.10 |
fi |
447 |
|
|
exit 0 |
448 |
|
|
) |
449 |
|
|
fi |
450 |
|
|
} |
451 |
|
|
|
452 |
jmc |
1.83 |
run_clean() |
453 |
edhill |
1.68 |
{ |
454 |
jmc |
1.83 |
# run_clean directory |
455 |
|
|
if test "x$NOCLEAN" = xt ; then |
456 |
|
|
echo "run_clean skipped!" |
457 |
|
|
else |
458 |
edhill |
1.68 |
( |
459 |
|
|
cd $1; |
460 |
jmc |
1.139 |
printf 'clean run-dir ... ' |
461 |
jmc |
1.83 |
# part of what is done after "make clean" when doing "make CLEAN" |
462 |
|
|
find . -name "*.meta" -exec rm {} \; |
463 |
|
|
find . -name "*.data" -exec rm {} \; |
464 |
|
|
find . -name "fort.*" -exec rm {} \; |
465 |
|
|
find . -type l -exec rm {} \; |
466 |
jmc |
1.161 |
#- should remove executable only if sym-link (alredy done above) |
467 |
jmc |
1.172 |
rm -f $RUNLOG *.txt STD* w2_tile_topology.????.log *diagnostics.log datetime |
468 |
jmc |
1.83 |
rm -rf mnc_test_* |
469 |
jmc |
1.175 |
rm -f *_MIT_CE_000.opt0000 costfunction*0000 |
470 |
jmc |
1.139 |
echo successful |
471 |
edhill |
1.68 |
exit 0 |
472 |
|
|
) |
473 |
|
|
fi |
474 |
|
|
} |
475 |
|
|
|
476 |
edhill |
1.10 |
makedependmodel() |
477 |
|
|
{ |
478 |
|
|
# makedependmodel directory |
479 |
|
|
if test "x$NODEPEND" = xt ; then |
480 |
|
|
echo "make depend skipped!" |
481 |
|
|
else |
482 |
|
|
( |
483 |
|
|
cd $1; |
484 |
jmc |
1.139 |
printf 'make depend ... ' |
485 |
jmc |
1.146 |
$MAKE depend >> make.tr_log 2>&1 |
486 |
edhill |
1.1 |
RETVAL=$? |
487 |
|
|
if test "x$RETVAL" != x0 ; then |
488 |
jmc |
1.146 |
tail make.tr_log |
489 |
jmc |
1.139 |
echo "makedependmodel: make depend failed" |
490 |
jmc |
1.148 |
cp make.tr_log genmake.log genmake.tr_log $CDIR |
491 |
edhill |
1.1 |
return 1 |
492 |
edhill |
1.10 |
else |
493 |
jmc |
1.139 |
echo successful |
494 |
edhill |
1.1 |
fi |
495 |
edhill |
1.10 |
) |
496 |
|
|
fi |
497 |
edhill |
1.1 |
} |
498 |
|
|
|
499 |
|
|
makemodel() |
500 |
|
|
{ |
501 |
|
|
# makemodel directory |
502 |
|
|
( |
503 |
jmc |
1.159 |
mk_fail=0 |
504 |
jmc |
1.136 |
if test "x$NOMAKE" = xt ; then |
505 |
|
|
cd $1; |
506 |
|
|
if test -x $EXECUTABLE ; then |
507 |
|
|
echo "make skipped!" |
508 |
|
|
else |
509 |
|
|
echo "no executable!" |
510 |
jmc |
1.159 |
mk_fail=3 |
511 |
jmc |
1.136 |
fi |
512 |
|
|
else |
513 |
edhill |
1.1 |
cd $1; |
514 |
|
|
if test -r Makefile ; then |
515 |
jmc |
1.139 |
printf 'make ... ' |
516 |
jmc |
1.171 |
if test "x$REPLMAKE" = x ; then |
517 |
|
|
$MAKE $TARG >> make.tr_log 2>&1 |
518 |
|
|
else |
519 |
|
|
$REPLMAKE $TARG >> make.tr_log 2>&1 |
520 |
|
|
fi |
521 |
edhill |
1.1 |
RETVAL=$? |
522 |
|
|
if test "x$RETVAL" != x0 ; then |
523 |
jmc |
1.146 |
tail make.tr_log |
524 |
jmc |
1.139 |
echo failed |
525 |
jmc |
1.163 |
cp genmake.log genmake.tr_log $CDIR |
526 |
|
|
tail -$NBLINES_MKLOG make.tr_log > $CDIR"/make.tr_log_tail" |
527 |
jmc |
1.131 |
rm -f $EXECUTABLE |
528 |
jmc |
1.159 |
mk_fail=1 |
529 |
edhill |
1.1 |
else |
530 |
jmc |
1.139 |
echo successful |
531 |
edhill |
1.1 |
fi |
532 |
jmc |
1.159 |
else |
533 |
|
|
echo "no Makefile !" |
534 |
|
|
mk_fail=2 |
535 |
edhill |
1.1 |
fi |
536 |
jmc |
1.136 |
fi |
537 |
jmc |
1.175 |
if test $KIND = 2 -a -f taf_ad.log ; then |
538 |
jmc |
1.158 |
head -1 taf_ad.log >> $CDIR"/summary.txt" |
539 |
|
|
nerr=`grep -c 'TAF *.* ERROR ' taf_ad.log` |
540 |
|
|
nwar=`grep -c 'TAF RECOMPUTATION *.* WARNING ' taf_ad.log` |
541 |
|
|
echo " TAF reports $nerr Errors and $nwar Recomputation Warnings" \ |
542 |
|
|
>> $CDIR"/summary.txt" |
543 |
|
|
fi |
544 |
jmc |
1.159 |
if test $mk_fail != 0 ; then return $mk_fail ; fi |
545 |
edhill |
1.1 |
) |
546 |
|
|
} |
547 |
|
|
|
548 |
jmc |
1.154 |
mk_mpi_size() |
549 |
|
|
{ |
550 |
jmc |
1.173 |
# mk_mpi_size input_file output_file proc_Nb threads_Nb_X threads_Nb_Y |
551 |
jmc |
1.154 |
# |
552 |
jmc |
1.173 |
# make new SIZE.h (=output_file) from SIZE.h_mpi (=input_file) |
553 |
jmc |
1.154 |
# for an MPI build with no more than proc_Nb processors ; |
554 |
jmc |
1.173 |
# ensure that enough tiles per proc (nSx,nSy) remain for the given |
555 |
|
|
# number of threads (nTx,nTy) ; |
556 |
|
|
# return the effective number of processors. |
557 |
jmc |
1.154 |
|
558 |
|
|
inp=$1 |
559 |
|
|
out=$2 |
560 |
|
|
np=$3 |
561 |
jmc |
1.173 |
tx=$4 |
562 |
|
|
ty=$5 |
563 |
jmc |
1.154 |
tmp=TTT.$$ |
564 |
|
|
|
565 |
jmc |
1.173 |
# dirX : select with direction to favor in MPI process repartition |
566 |
|
|
# dirX=1 : prefer to put more proc in X direction |
567 |
|
|
# dirX=0 : prefer to put more proc in Y direction |
568 |
|
|
dirX=0 |
569 |
|
|
|
570 |
jmc |
1.154 |
px=`grep "^ & *nPx *=" $inp | sed "s/^ & *nPx *= *//" | sed 's/, *$//'` |
571 |
|
|
py=`grep "^ & *nPy *=" $inp | sed "s/^ & *nPy *= *//" | sed 's/, *$//'` |
572 |
|
|
sx=`grep "^ & *nSx *=" $inp | sed "s/^ & *nSx *= *//" | sed 's/, *$//'` |
573 |
|
|
sy=`grep "^ & *nSy *=" $inp | sed "s/^ & *nSy *= *//" | sed 's/, *$//'` |
574 |
|
|
|
575 |
jmc |
1.173 |
#- for each direction, assume # of threads is a multiple of total number of tiles |
576 |
|
|
nx=$px |
577 |
|
|
if [ `expr $sx % $tx` -ne 0 -a `expr $sx \* $px % $tx` -eq 0 ] ; then |
578 |
|
|
nx=`expr $sx \* $px / $tx` |
579 |
|
|
if [ $verbose -gt 1 ]; then |
580 |
|
|
echo " change px from $px to $nx to accommodate $tx threads" |
581 |
|
|
fi |
582 |
|
|
fi |
583 |
|
|
ny=$py |
584 |
|
|
if [ `expr $sy % $ty` -ne 0 -a `expr $sy \* $py % $ty` -eq 0 ] ; then |
585 |
|
|
ny=`expr $sy \* $py / $ty` |
586 |
|
|
if [ $verbose -gt 1 ]; then |
587 |
|
|
echo " change py from $py to $ny to accommodate $ty threads" |
588 |
|
|
fi |
589 |
|
|
fi |
590 |
jmc |
1.154 |
#- find the largest divisor of input_file proc Nb, but not larger than $np |
591 |
|
|
pp=0 |
592 |
jmc |
1.155 |
i=1 |
593 |
jmc |
1.173 |
while [ $i -le $nx ] ; do |
594 |
|
|
if [ `expr $nx % $i` -eq 0 ] ; then |
595 |
jmc |
1.155 |
j=1 |
596 |
jmc |
1.173 |
while [ $j -le $ny ] ; do |
597 |
|
|
if [ `expr $ny % $j` -eq 0 ] ; then |
598 |
jmc |
1.155 |
ij=`expr $i \* $j` |
599 |
|
|
if [ $ij -gt $pp ] ; then |
600 |
jmc |
1.161 |
flag=1 |
601 |
|
|
elif [ $ij -eq $pp ] ; then |
602 |
|
|
flag=$dirX |
603 |
|
|
else |
604 |
|
|
flag=0 |
605 |
|
|
fi |
606 |
|
|
if test $flag = 1 ; then |
607 |
jmc |
1.155 |
if [ $ij -le $np ] ; then |
608 |
|
|
ix=$i ; jy=$j ; pp=$ij |
609 |
|
|
#echo " ix,jy= $ix,$jy" |
610 |
|
|
fi |
611 |
|
|
fi |
612 |
|
|
fi |
613 |
|
|
j=`expr $j + 1` |
614 |
|
|
done |
615 |
jmc |
1.154 |
fi |
616 |
jmc |
1.155 |
i=`expr $i + 1` |
617 |
jmc |
1.154 |
done |
618 |
|
|
|
619 |
|
|
#- create new SIZE.h type file: |
620 |
|
|
sx=`expr $sx \* $px / $ix` |
621 |
|
|
sy=`expr $sy \* $py / $jy` |
622 |
|
|
if [ $verbose -gt 1 ]; then |
623 |
|
|
echo " px,py,np= $px,$py,$np : New MPI size: px,py= $ix,$jy : sx,sy= $sx,$sy" |
624 |
|
|
fi |
625 |
|
|
sed "/^ \& *nPx *=/s/[0-9]*,/$ix,/" $inp > $tmp |
626 |
|
|
sed "/^ \& *nPy *=/s/[0-9]*,/$jy,/" $tmp > $out |
627 |
|
|
sed "/^ \& *nSx *=/s/[0-9]*,/$sx,/" $out > $tmp |
628 |
|
|
sed "/^ \& *nSy *=/s/[0-9]*,/$sy,/" $tmp > $out |
629 |
|
|
rm -f $tmp |
630 |
|
|
return $pp |
631 |
|
|
} |
632 |
|
|
|
633 |
edhill |
1.27 |
symlink_mpifiles() |
634 |
|
|
{ |
635 |
|
|
# Put special links so that MPI specific files are used |
636 |
|
|
# This MUST be invoked between makeclean and makelinks because |
637 |
|
|
# the Makefile will link to non-mpi files by default |
638 |
|
|
|
639 |
|
|
dir=$1 |
640 |
|
|
code_dir=$2 |
641 |
jmc |
1.154 |
build_dir=$dir/$3 |
642 |
jmc |
1.135 |
|
643 |
edhill |
1.27 |
# These are files that should replace their counter-part when using -mpi |
644 |
jmc |
1.154 |
MPI_FILES=`(cd $dir/$code_dir; find . -name "*_mpi" -print)` |
645 |
edhill |
1.27 |
|
646 |
jmc |
1.154 |
for ii in $MPI_FILES ; do |
647 |
|
|
i=`echo $ii | sed 's:^\./::'` |
648 |
|
|
name=`echo $i | sed 's:_mpi::'` |
649 |
|
|
file="../$code_dir/$i" |
650 |
|
|
if test $name = 'SIZE.h' ; then file="SIZE.h.mpi" ; fi |
651 |
|
|
|
652 |
|
|
# Is this an MPI run? |
653 |
|
|
if test "x$MPI" = x0 ; then |
654 |
|
|
# NO: We undo any _mpi symbolically linked files |
655 |
|
|
if test -L $build_dir/$name ; then |
656 |
|
|
( cd $build_dir ; cmp $name $file > /dev/null 2>&1 ) |
657 |
|
|
RETVAL=$? |
658 |
|
|
if test "x$RETVAL" = x0 ; then |
659 |
|
|
if [ $verbose -gt 1 ]; then |
660 |
|
|
echo " Un-linking $name from ../$code_dir" ; fi |
661 |
|
|
rm -f $build_dir/$name |
662 |
|
|
fi |
663 |
|
|
fi |
664 |
|
|
else |
665 |
|
|
# YES: We symbolically link these files to the build |
666 |
|
|
# dir so long as there is no real file in place |
667 |
|
|
( cd $build_dir ; cmp $name $file > /dev/null 2>&1 ) |
668 |
edhill |
1.27 |
RETVAL=$? |
669 |
jmc |
1.154 |
if [ $verbose -gt 1 ]; then echo " cmp $name $file returns: $RETVAL" ; fi |
670 |
edhill |
1.27 |
if test "x$RETVAL" != x0 ; then |
671 |
jmc |
1.154 |
if test -h $build_dir/$name ; then rm -f $build_dir/$name ; fi |
672 |
|
|
if test ! -r $build_dir/$name ; then |
673 |
|
|
if [ $verbose -gt 1 ]; then echo " Linking $name to $file" ; fi |
674 |
|
|
(cd $build_dir; ln -sf $file $name) |
675 |
edhill |
1.27 |
fi |
676 |
|
|
fi |
677 |
jmc |
1.154 |
fi |
678 |
|
|
done |
679 |
edhill |
1.27 |
} |
680 |
|
|
|
681 |
edhill |
1.1 |
linkdata() |
682 |
|
|
{ |
683 |
jmc |
1.83 |
# linkdata run_dir input_dir_1 input_dir_2 ... |
684 |
edhill |
1.1 |
# |
685 |
|
|
# symbolically link data files to run directory |
686 |
jmc |
1.83 |
if test -d $1 ; then |
687 |
edhill |
1.12 |
( |
688 |
jmc |
1.83 |
cd $1 ; shift |
689 |
jmc |
1.139 |
echo 'linkdata from dirs:' $* |
690 |
jmc |
1.175 |
inpMPI=`(cd ../$1 ; find . -name "*.mpi" -print | sed 's:^\./::')` |
691 |
jmc |
1.125 |
for xx in $inpMPI ; do |
692 |
|
|
if test -r "../"$1"/"$xx ; then |
693 |
jmc |
1.175 |
# found 1 _mpi sfx file in 1rst input dir and it is readable |
694 |
jmc |
1.125 |
yy=`echo $xx | sed 's:\.mpi$::'` |
695 |
jmc |
1.154 |
if test "x$MPI" = "x0" ; then |
696 |
|
|
# not mpi test: remove symbolic link |
697 |
|
|
if test -h $yy ; then rm -f $yy ; fi |
698 |
|
|
else |
699 |
|
|
# mpi test: remove symbolic link & link .mpi sfx file |
700 |
jmc |
1.125 |
if test -h $yy ; then rm -f $yy ; fi |
701 |
jmc |
1.135 |
if test ! -r $yy ; then |
702 |
jmc |
1.125 |
ln -sf "../"$1"/"$xx $yy ; |
703 |
jmc |
1.139 |
printf " $xx" 1>&2 |
704 |
jmc |
1.125 |
fi |
705 |
|
|
fi |
706 |
|
|
fi |
707 |
|
|
done |
708 |
jmc |
1.83 |
if test -r "../"$1"/eedata.mth" ; then |
709 |
|
|
# found eedata.mth in 1rst input dir and it is readable |
710 |
|
|
if test "x$MULTI_THREAD" = "xt" ; then |
711 |
|
|
# multi-threaded test: remove symbolic link & link eedata.mth |
712 |
|
|
if test -h eedata ; then rm -f eedata ; fi |
713 |
jmc |
1.135 |
if test ! -r eedata ; then |
714 |
jmc |
1.83 |
ln -sf "../"$1"/eedata.mth" eedata ; |
715 |
jmc |
1.139 |
printf ' eedata.mth' 1>&2 |
716 |
edhill |
1.24 |
fi |
717 |
jmc |
1.83 |
else |
718 |
|
|
# not multi-threaded test: remove eedata symbolic link |
719 |
|
|
if test -h eedata ; then rm -f eedata ; fi |
720 |
|
|
fi |
721 |
|
|
fi |
722 |
jmc |
1.108 |
prevDir='NONE' |
723 |
jmc |
1.83 |
for ldir in $* ; do |
724 |
jmc |
1.108 |
if test -d "../"$ldir -a $ldir != $prevDir ; then |
725 |
jmc |
1.175 |
printf " ldir=${ldir}:" 1>&2 |
726 |
jmc |
1.83 |
files=`( cd "../"$ldir ; ls -1 | grep -v CVS )` |
727 |
|
|
for i in $files ; do |
728 |
|
|
if test ! -d "../"$ldir/$i ; then |
729 |
|
|
if test ! -r $i ; then |
730 |
|
|
printf ' '$i 1>&2 |
731 |
|
|
ln -sf "../"$ldir"/"$i $i |
732 |
|
|
fi |
733 |
|
|
fi |
734 |
|
|
done |
735 |
jmc |
1.139 |
printf ' ;' 1>&2 |
736 |
jmc |
1.83 |
if test -x "../"$ldir"/"prepare_run ; then |
737 |
jmc |
1.139 |
"../"$ldir"/"prepare_run 1>&2 |
738 |
|
|
else |
739 |
|
|
echo '' 1>&2 |
740 |
edhill |
1.24 |
fi |
741 |
jmc |
1.82 |
fi |
742 |
jmc |
1.108 |
prevDir=$ldir |
743 |
jmc |
1.83 |
done |
744 |
edhill |
1.12 |
) |
745 |
edhill |
1.1 |
fi |
746 |
|
|
} |
747 |
|
|
|
748 |
|
|
runmodel() |
749 |
|
|
{ |
750 |
edhill |
1.6 |
# runmodel directory |
751 |
edhill |
1.1 |
# |
752 |
jmc |
1.154 |
# runs $COMMAND in "directory" |
753 |
edhill |
1.6 |
# (where "$COMMAND" is relative to "directory") |
754 |
edhill |
1.1 |
( |
755 |
|
|
cd $1 |
756 |
jmc |
1.139 |
printf 'runmodel in %s ... ' $1 |
757 |
jmc |
1.158 |
if test "x$MPI" != x0 ; then |
758 |
|
|
#- adjust the MPI run command with the right number of Procs |
759 |
|
|
#echo '' ; echo " COMMAND='$COMMAND'" |
760 |
|
|
COMMAND=`echo $COMMAND | sed "s/ TR_NPROC / $LOC_NPROC /"` |
761 |
|
|
if test "x$MPI_MFILE" != x ; then |
762 |
|
|
COMMAND=`echo $COMMAND | sed "s/ TR_MFILE / ..\/..\/$LOC_MFILE /"` |
763 |
|
|
fi |
764 |
|
|
#echo " COMMAND='$COMMAND'" |
765 |
|
|
fi |
766 |
jmc |
1.134 |
if test -L $EXECUTABLE ; then |
767 |
|
|
if test -x "../"$builddir"/"$EXECUTABLE ; then |
768 |
jmc |
1.154 |
cmp $EXECUTABLE "../"$builddir"/"$EXECUTABLE > /dev/null 2>&1 |
769 |
|
|
outD=$? ; if test "x$outD" != x0 ; then rm -f $EXECUTABLE ; fi |
770 |
jmc |
1.134 |
else rm -f $EXECUTABLE |
771 |
|
|
fi |
772 |
jmc |
1.106 |
fi |
773 |
jmc |
1.175 |
if test ! -x $EXECUTABLE -a -x "../"$builddir"/"$EXECUTABLE ; then |
774 |
jmc |
1.119 |
echo " link" $EXECUTABLE "from dir ../"$builddir > run.log_tmp |
775 |
jmc |
1.83 |
ln -sf "../"$builddir"/"$EXECUTABLE . |
776 |
|
|
fi |
777 |
jmc |
1.175 |
if test ! -x $EXECUTABLE ; then |
778 |
jmc |
1.156 |
rm -f $RUNLOG ; touch $RUNLOG |
779 |
|
|
if test -f run.log_tmp ; then cat run.log_tmp >> $RUNLOG ; fi |
780 |
|
|
echo " no executable:" $EXECUTABLE >> $RUNLOG |
781 |
|
|
RETVAL=8 |
782 |
|
|
ENDVAL=-1 |
783 |
jmc |
1.75 |
else |
784 |
jmc |
1.175 |
if test ! -f $OUTPUTFILE -o $OUTPUTFILE -ot $EXECUTABLE ; then |
785 |
|
|
# output do not exist or is older than executable: |
786 |
jmc |
1.162 |
rm -f $OUTPUTFILE $RUNLOG ; touch $RUNLOG |
787 |
jmc |
1.156 |
if test -f run.log_tmp ; then cat run.log_tmp >> $RUNLOG ; fi |
788 |
|
|
( eval $COMMAND ) >> $RUNLOG 2>&1 |
789 |
|
|
RETVAL=$? |
790 |
|
|
ENDVAL=`tail $OUTPUTFILE | grep -c 'PROGRAM MAIN: Execution ended Normally'` |
791 |
|
|
if [ $POSTCLEAN -eq 1 -a $ENDVAL -gt 0 ] ; then |
792 |
|
|
find . -name "*.meta" -exec rm {} \; |
793 |
|
|
find . -name "*.data" -exec rm {} \; |
794 |
|
|
rm -rf mnc_test_* |
795 |
jmc |
1.83 |
fi |
796 |
jmc |
1.156 |
else |
797 |
|
|
RETVAL=0 |
798 |
jmc |
1.153 |
ENDVAL=`tail $OUTPUTFILE | grep -c 'PROGRAM MAIN: Execution ended Normally'` |
799 |
jmc |
1.156 |
touch $RUNLOG |
800 |
|
|
if test -f run.log_tmp ; then cat run.log_tmp >> $RUNLOG ; fi |
801 |
jmc |
1.175 |
echo "---------->> $OUTPUTFILE is up to date " >> $RUNLOG 2>&1 |
802 |
jmc |
1.156 |
fi |
803 |
jmc |
1.75 |
fi |
804 |
jmc |
1.119 |
rm -f run.log_tmp |
805 |
jmc |
1.158 |
#- in all cases where OutputFile exists, report SIZE (and AD time) |
806 |
|
|
if test -f $OUTPUTFILE ; then |
807 |
|
|
grep '(PID\.TID 0000\.0001) n.. =' $OUTPUTFILE \ |
808 |
|
|
| sed 's/(PID.TID 0000.0001) //' >> $CDIR"/summary.txt" |
809 |
jmc |
1.175 |
if test $KIND = 2 ; then |
810 |
jmc |
1.158 |
grep -A3 'Seconds in section "ALL' $OUTPUTFILE >> $CDIR"/summary.txt" |
811 |
|
|
fi |
812 |
|
|
fi |
813 |
|
|
if test -s STDERR.0000 ; then cp STDERR.0000 $CDIR"/STDERR.0000" ; fi |
814 |
jmc |
1.88 |
if [ $RETVAL -eq 0 -a $ENDVAL -gt 0 ] ; then |
815 |
jmc |
1.139 |
echo successful |
816 |
|
|
printf '=> output from running in %s :\n' $1 1>&2 |
817 |
|
|
tail $RUNLOG | sed 's/^.*/> &/g' 1>&2 |
818 |
edhill |
1.6 |
return 0 |
819 |
jmc |
1.132 |
elif [ $RETVAL -ne 0 -a $ENDVAL -gt 0 ] ; then |
820 |
|
|
#-- for some weird cases (run is finihed but with error code) |
821 |
jmc |
1.139 |
echo 'finished with error (run:' $RETVAL ' end:' $ENDVAL ')' |
822 |
|
|
printf '=> output from running in %s :\n' $1 1>&2 |
823 |
|
|
tail $RUNLOG | sed 's/^.*/> &/g' 1>&2 |
824 |
jmc |
1.132 |
return 0 |
825 |
edhill |
1.6 |
else |
826 |
jmc |
1.139 |
echo 'failed (run:' $RETVAL ' end:' $ENDVAL ')' |
827 |
|
|
printf '=> output from running in %s :\n' $1 1>&2 |
828 |
|
|
tail $RUNLOG | sed 's/^.*/> &/g' 1>&2 |
829 |
jmc |
1.119 |
cp $RUNLOG $CDIR"/"$RUNLOG |
830 |
edhill |
1.6 |
return 1 |
831 |
edhill |
1.1 |
fi |
832 |
|
|
) |
833 |
|
|
} |
834 |
|
|
|
835 |
|
|
createcodelet() |
836 |
|
|
{ |
837 |
|
|
# create codelet for comparing model output |
838 |
|
|
|
839 |
jmc |
1.112 |
printf "creating the comparison code (using CC=$CC)... " |
840 |
jmc |
1.91 |
cat > tr_cmpnum.c <<EOF |
841 |
edhill |
1.22 |
#include <stdio.h> |
842 |
|
|
#include <math.h> |
843 |
|
|
int main( int argc, char** argv ) { |
844 |
jmc |
1.91 |
int linnum,cmplin,best,lncnt; |
845 |
edhill |
1.52 |
double a,b,abave,relerr; |
846 |
jmc |
1.57 |
best = -22; |
847 |
adcroft |
1.33 |
lncnt = 0; |
848 |
jmc |
1.96 |
while( 1 & ( (lncnt+=1) < 999 ) ) { |
849 |
edhill |
1.22 |
scanf("%d", &linnum); |
850 |
|
|
if (linnum == -1) break; |
851 |
|
|
scanf("%lf", &a); scanf("%lf", &b); |
852 |
edhill |
1.52 |
abave = 0.5*(fabs(a)+fabs(b)); |
853 |
jmc |
1.91 |
if ( abave == abave ) { |
854 |
|
|
if (abave > 0.0) { |
855 |
|
|
relerr=fabs(a-b)/abave; |
856 |
|
|
if (relerr > 0.0) { cmplin = (int)rint(log10(relerr)); } |
857 |
|
|
else { cmplin = -16 ; } |
858 |
|
|
best = (best > cmplin) ? best : cmplin; } |
859 |
|
|
else { cmplin = -22 ; } |
860 |
|
|
/* printf("%d ; %lf ; %lf\n",cmplin,a,b); */ |
861 |
|
|
} |
862 |
|
|
else { |
863 |
|
|
/* printf("%lf ; %lf ; %lf\n",abave,a,b); */ |
864 |
|
|
break; } |
865 |
edhill |
1.22 |
} |
866 |
adcroft |
1.33 |
if (lncnt == 999) best=-29; |
867 |
jmc |
1.91 |
if (linnum != -1) best=-99; |
868 |
edhill |
1.22 |
printf("%d\n", -best); |
869 |
|
|
return 0; |
870 |
|
|
} |
871 |
|
|
EOF |
872 |
jmc |
1.91 |
$CC -o tr_cmpnum tr_cmpnum.c -lm |
873 |
edhill |
1.1 |
|
874 |
jmc |
1.91 |
if [ -x ./tr_cmpnum ]; then |
875 |
edhill |
1.1 |
echo "OK" |
876 |
|
|
return 0 |
877 |
|
|
else |
878 |
|
|
echo |
879 |
jmc |
1.135 |
echo "ERROR: failed to compile comparison code -- please specify" |
880 |
edhill |
1.58 |
echo " a C compiler using the CC environment variable." |
881 |
edhill |
1.1 |
exit 1 |
882 |
|
|
fi |
883 |
|
|
} |
884 |
|
|
|
885 |
|
|
formatresults() |
886 |
|
|
{ |
887 |
|
|
# formatresults expt genmake depend make run results* |
888 |
|
|
|
889 |
|
|
nm=$1 |
890 |
|
|
printf '%s %s %s %s' $2 $3 $4 $5 |
891 |
|
|
shift; shift; shift; shift; shift; |
892 |
jmc |
1.94 |
listPrt=$@ |
893 |
|
|
listRes=`echo $listPrt | sed 's/>//' | sed 's/<//'` |
894 |
|
|
xx=`echo $listPrt | sed 's/.*>//' | sed 's/<.*//' | awk '{print $1}'` |
895 |
jmc |
1.97 |
printf '%3s' $listPrt |
896 |
jmc |
1.98 |
# line below does not work on hp-ux_ia64 : do those substitutions later on |
897 |
jmc |
1.95 |
# printf '%3s' $listPrt | sed 's/ 99/ --/g' | sed 's/ > />/' | sed 's/ < /</' |
898 |
jmc |
1.135 |
|
899 |
jmc |
1.94 |
if [ $xx = '..' ]; then |
900 |
|
|
printf ' N/O ' |
901 |
|
|
elif [ $xx = '--' ]; then |
902 |
|
|
printf ' N/O ' |
903 |
|
|
elif [ $xx = 99 ]; then |
904 |
edhill |
1.1 |
printf ' N/O ' |
905 |
|
|
else |
906 |
jmc |
1.94 |
if [ $xx -ge $MATCH_CRIT ]; then |
907 |
edhill |
1.1 |
printf ' pass' |
908 |
|
|
else |
909 |
|
|
printf ' FAIL' |
910 |
|
|
fi |
911 |
|
|
fi |
912 |
|
|
printf ' %s' $nm |
913 |
|
|
printf '\n' |
914 |
jmc |
1.135 |
|
915 |
edhill |
1.1 |
} |
916 |
|
|
|
917 |
|
|
scandirs() |
918 |
|
|
{ |
919 |
jmc |
1.81 |
if [ $# -eq 1 ]; then |
920 |
|
|
for arg in * ; do |
921 |
jmc |
1.175 |
#test -f $arg/$1 && echo $arg |
922 |
|
|
test -f $arg/$1 -o -f $arg/$1.gz && echo $arg |
923 |
jmc |
1.81 |
done |
924 |
edhill |
1.1 |
else |
925 |
jmc |
1.81 |
echo $* |
926 |
edhill |
1.1 |
fi |
927 |
|
|
} |
928 |
|
|
|
929 |
|
|
|
930 |
jmc |
1.123 |
check_eedata() |
931 |
|
|
{ |
932 |
jmc |
1.161 |
# check_eedata eedata size.h |
933 |
jmc |
1.123 |
if [ $# -eq 2 ] ; then |
934 |
jmc |
1.161 |
if test -f $1 -a -f $2 ; then |
935 |
|
|
nx=`grep "^ *nTx *=" $1 | tail -1 | sed 's/^ *nTx *= *//' | sed "s/, *$//"` |
936 |
|
|
sx=`grep "^ & *nSx *=" $2 | sed "s/^ & *nSx *=//" | sed 's/, *$//'` |
937 |
jmc |
1.123 |
if test "x$nx" = x ; then |
938 |
|
|
rx=10 |
939 |
|
|
else |
940 |
|
|
rx=`expr $sx % $nx` |
941 |
|
|
fi |
942 |
jmc |
1.161 |
ny=`grep "^ *nTy *=" $1 | tail -1 | sed 's/^ *nTy *= *//' | sed "s/, *$//"` |
943 |
|
|
sy=`grep "^ & *nSy *=" $2 | sed "s/^ & *nSy *=//" | sed 's/, *$//'` |
944 |
jmc |
1.123 |
if test "x$ny" = x ; then |
945 |
|
|
ry=20 |
946 |
|
|
else |
947 |
|
|
ry=`expr $sy % $ny` |
948 |
|
|
fi |
949 |
|
|
echo `expr $rx + $ry` |
950 |
jmc |
1.161 |
else |
951 |
|
|
echo '-1' |
952 |
|
|
fi |
953 |
|
|
elif [ $# -eq 1 ] ; then |
954 |
|
|
if test -f $1 ; then |
955 |
|
|
nx=`grep "^ *nTx *=" $1 | tail -1 | sed 's/^ *nTx *= *//' | sed "s/, *$//"` |
956 |
|
|
if test "x$nx" = x ; then nx=1 ; fi |
957 |
|
|
ny=`grep "^ *nTy *=" $1 | tail -1 | sed 's/^ *nTy *= *//' | sed "s/, *$//"` |
958 |
|
|
if test "x$ny" = x ; then ny=1 ; fi |
959 |
|
|
#echo $nx $ny |
960 |
|
|
echo $nx |
961 |
|
|
else |
962 |
jmc |
1.123 |
echo '-1' |
963 |
jmc |
1.161 |
fi |
964 |
jmc |
1.123 |
else |
965 |
|
|
echo '-2' |
966 |
|
|
fi |
967 |
|
|
|
968 |
|
|
} |
969 |
|
|
|
970 |
edhill |
1.1 |
############################################################################### |
971 |
|
|
|
972 |
|
|
|
973 |
|
|
# Default properties |
974 |
|
|
debug=0 |
975 |
|
|
verbose=1 |
976 |
jmc |
1.163 |
NBLINES_MKLOG=16000 |
977 |
edhill |
1.10 |
|
978 |
jmc |
1.164 |
OptLev=1 |
979 |
jmc |
1.109 |
GSL=f |
980 |
edhill |
1.10 |
|
981 |
|
|
CLEANUP=f |
982 |
jmc |
1.133 |
NORUN=f |
983 |
edhill |
1.10 |
QUICK=f |
984 |
jmc |
1.136 |
NOMAKE=f |
985 |
edhill |
1.10 |
NOGENMAKE=f |
986 |
|
|
NOCLEAN=f |
987 |
|
|
NODEPEND=f |
988 |
jmc |
1.156 |
POSTCLEAN=0 |
989 |
edhill |
1.1 |
|
990 |
edhill |
1.4 |
BASH= |
991 |
edhill |
1.10 |
OPTFILE=NONE |
992 |
|
|
ADDRESSES= |
993 |
edhill |
1.1 |
TESTDIRS= |
994 |
jmc |
1.89 |
SKIPDIRS= |
995 |
edhill |
1.1 |
MPACKDIR="../tools/mpack-1.6" |
996 |
edhill |
1.20 |
HAVE_MPACK= |
997 |
jmc |
1.113 |
MPACK= |
998 |
edhill |
1.24 |
COMMAND= |
999 |
jmc |
1.141 |
MKDEPEND= |
1000 |
edhill |
1.59 |
if test "x$MAKE" = x ; then |
1001 |
|
|
MAKE=make |
1002 |
|
|
fi |
1003 |
jmc |
1.171 |
REPLMAKE= |
1004 |
edhill |
1.59 |
if test "x$CC" = x ; then |
1005 |
|
|
CC=cc |
1006 |
|
|
fi |
1007 |
edhill |
1.43 |
JOBS= |
1008 |
jmc |
1.165 |
TARG= |
1009 |
jmc |
1.154 |
MPI=0 |
1010 |
jmc |
1.156 |
MPI_MFILE= |
1011 |
jmc |
1.83 |
MULTI_THREAD=f |
1012 |
jmc |
1.70 |
OUTDIR= |
1013 |
edhill |
1.40 |
DELDIR= |
1014 |
jmc |
1.135 |
USE_R4= |
1015 |
jmc |
1.165 |
EXTRFLG= |
1016 |
edhill |
1.1 |
|
1017 |
jmc |
1.175 |
#- type of testing (KIND): |
1018 |
|
|
# KIND=0 : forward (= default) ; KIND=1 : Tangent Linear with TAF ; |
1019 |
|
|
# KIND=2 : Adjoint with TAF ; KIND=4 : Adjoint with OpenAD |
1020 |
|
|
KIND=0 |
1021 |
edhill |
1.24 |
|
1022 |
jmc |
1.117 |
# list of pTracers to check for monitor output |
1023 |
edhill |
1.50 |
PTRACERS_NUM="1 2 3 4 5" |
1024 |
edhill |
1.49 |
|
1025 |
jmc |
1.147 |
MATCH_CRIT=10 |
1026 |
jmc |
1.92 |
|
1027 |
edhill |
1.34 |
printf "parsing options... " |
1028 |
edhill |
1.1 |
|
1029 |
|
|
ac_prev= |
1030 |
|
|
for ac_option ; do |
1031 |
|
|
|
1032 |
|
|
# If the previous option needs an argument, assign it. |
1033 |
|
|
if test -n "$ac_prev"; then |
1034 |
|
|
eval "$ac_prev=\$ac_option" |
1035 |
|
|
ac_prev= |
1036 |
|
|
continue |
1037 |
|
|
fi |
1038 |
|
|
|
1039 |
|
|
ac_optarg=`expr "x$ac_option" : 'x[^=]*=\(.*\)'` |
1040 |
jmc |
1.135 |
|
1041 |
edhill |
1.1 |
case $ac_option in |
1042 |
|
|
|
1043 |
jmc |
1.156 |
-help | --help | -h | --h) usage ;; |
1044 |
|
|
|
1045 |
|
|
-optfile | --optfile | -of | --of) ac_prev=OPTFILE ;; |
1046 |
|
|
-optfile=* | --optfile=* | -of=* | --of=*) OPTFILE=$ac_optarg ;; |
1047 |
|
|
|
1048 |
|
|
-addr | --addr | -a | --a) ac_prev=ADDRESSES ;; |
1049 |
|
|
-addr=* | --addr=* | -a=* | --a=*) ADDRESSES=$ac_optarg ;; |
1050 |
|
|
-mpackdir | --mpackdir | -mpd | --mpd) ac_prev=MPACKDIR ;; |
1051 |
|
|
-mpackdir=* | --mpackdir=* | -mpd=* | --mpd=*) MPACKDIR=$ac_optarg ;; |
1052 |
|
|
|
1053 |
|
|
-tdir | --tdir | -t | --t) ac_prev=TESTDIRS ;; |
1054 |
|
|
-tdir=* | --tdir=* | -t=* | --t=*) TESTDIRS=$ac_optarg ;; |
1055 |
|
|
-skipdir | --skipdir | -skd | --skd) ac_prev=SKIPDIRS ;; |
1056 |
|
|
-skipdir=* | --skipdir=* | -skd=* | --skd=*) SKIPDIRS=$ac_optarg ;; |
1057 |
|
|
|
1058 |
|
|
-bash | --bash | -b | --b) ac_prev=BASH ;; |
1059 |
|
|
-bash=* | --bash=* | -b=* | --b=*) BASH=$ac_optarg ;; |
1060 |
|
|
|
1061 |
|
|
-command | --command | -c | --c) ac_prev=COMMAND ;; |
1062 |
|
|
-command=* | --command=* | -c=* | --c=*) COMMAND=$ac_optarg ;; |
1063 |
|
|
|
1064 |
|
|
-makedepend | --makedepend | -md | --md) ac_prev=MKDEPEND ;; |
1065 |
|
|
-makedepend=* | --makedepend=* | -md=* | --md=*) MKDEPEND=$ac_optarg ;; |
1066 |
|
|
|
1067 |
|
|
-make | --make | -m | --m) ac_prev=MAKE ;; |
1068 |
|
|
-make=* | --make=* | -m=* | --m=*) MAKE=$ac_optarg ;; |
1069 |
|
|
|
1070 |
jmc |
1.171 |
-repl_mk | --repl_mk ) ac_prev=REPLMAKE ;; |
1071 |
|
|
-repl_mk=* | --repl_mk=*) REPLMAKE=$ac_optarg ;; |
1072 |
|
|
|
1073 |
jmc |
1.156 |
-odir | --odir) ac_prev=OUTDIR ;; |
1074 |
|
|
-odir=* | --odir=*) OUTDIR=$ac_optarg ;; |
1075 |
|
|
|
1076 |
|
|
-ptracers | --ptracers | -ptr | --ptr) ac_prev=PTRACERS_NUM ;; |
1077 |
|
|
-ptracers=* | --ptracers=* | -ptr=* | --ptr=*) PTRACERS_NUM=$ac_optarg ;; |
1078 |
edhill |
1.50 |
|
1079 |
jmc |
1.92 |
-match | --match ) ac_prev=MATCH_CRIT ;; |
1080 |
|
|
-match=* | --match=* ) MATCH_CRIT=$ac_optarg ;; |
1081 |
|
|
|
1082 |
jmc |
1.136 |
-j | --j) ac_prev=JOBS ;; |
1083 |
|
|
-j=* | --j=*) JOBS=$ac_optarg ;; |
1084 |
edhill |
1.43 |
|
1085 |
jmc |
1.165 |
-ef | --ef) ac_prev=EXTRFLG ;; |
1086 |
|
|
-ef=* | --ef=*) EXTRFLG=$ac_optarg ;; |
1087 |
|
|
|
1088 |
jmc |
1.156 |
-clean | --clean) CLEANUP=t ; DELDIR=t ;; |
1089 |
edhill |
1.10 |
|
1090 |
jmc |
1.156 |
-norun | --norun | -nr | --nr) NORUN=t ;; |
1091 |
jmc |
1.165 |
-obj | --obj ) TARG='obj' ; NORUN=t ;; |
1092 |
jmc |
1.156 |
-runonly | --runonly | -ro | --ro) QUICK=t ; NOMAKE=t ;; |
1093 |
|
|
-quick | --quick | -q | --q) QUICK=t ;; |
1094 |
|
|
-nogenmake | --nogenmake | -ng | --ng) NOGENMAKE=t ;; |
1095 |
|
|
-noclean | --noclean | -nc | --nc) NOCLEAN=t ;; |
1096 |
|
|
-nodepend | --nodepend | -nd | --nd) NODEPEND=t ;; |
1097 |
edhill |
1.10 |
|
1098 |
jmc |
1.156 |
-postclean | --postclean | -pc | --pc) POSTCLEAN=2 ;; |
1099 |
|
|
-deloutp | --deloutp | -do | --do) POSTCLEAN=1 ;; |
1100 |
edhill |
1.68 |
|
1101 |
jmc |
1.154 |
-mpi | --mpi) MPI=2 ;; |
1102 |
|
|
-MPI | --MPI) ac_prev=MPI ;; |
1103 |
|
|
-MPI=* | --MPI=*) MPI=$ac_optarg ;; |
1104 |
edhill |
1.10 |
|
1105 |
jmc |
1.156 |
-mfile | --mfile | -mf | --mf) ac_prev=MPI_MFILE ;; |
1106 |
|
|
-mfile=* | --mfile=* | -mf=* | --mf=*) MPI_MFILE=$ac_optarg ;; |
1107 |
|
|
|
1108 |
jmc |
1.83 |
-mth) MULTI_THREAD=t ;; |
1109 |
|
|
|
1110 |
jmc |
1.175 |
-tlm) if test $KIND = 0 ; then KIND=1 ; else |
1111 |
|
|
echo "Error: '-tlm', '-adm' and '-oad' are exclusive" ; usage |
1112 |
|
|
fi ;; |
1113 |
|
|
-adm | -ad) if test $KIND = 0 ; then KIND=2 ; else |
1114 |
|
|
echo "Error: '-tlm', '-adm' and '-oad' are exclusive" ; usage |
1115 |
|
|
fi ;; |
1116 |
|
|
-oad) if test $KIND = 0 ; then KIND=4 ; NODEPEND=t ; else |
1117 |
|
|
echo "Error: '-tlm', '-adm' and '-oad' are exclusive" ; usage |
1118 |
|
|
fi ;; |
1119 |
utke |
1.120 |
|
1120 |
jmc |
1.164 |
-ieee) echo "Warning: ignore option '-ieee' (already the default)" |
1121 |
jmc |
1.175 |
printf " ... " ;; |
1122 |
jmc |
1.164 |
-noieee) echo "Warning: will use option '-fast' instead of '-noieee' (obsolete)" |
1123 |
jmc |
1.175 |
printf " ... " ; OptLev=`expr $OptLev \* 2` ;; |
1124 |
jmc |
1.164 |
-fast) OptLev=`expr $OptLev \* 2` ;; |
1125 |
|
|
-devel) OptLev=0 ;; |
1126 |
jmc |
1.156 |
-gsl) GSL=t ;; |
1127 |
edhill |
1.10 |
|
1128 |
edhill |
1.1 |
-verbose) verbose=2 ;; |
1129 |
|
|
-debug) debug=1 ;; |
1130 |
|
|
-quiet) verbose=0 ;; |
1131 |
|
|
|
1132 |
edhill |
1.40 |
-deldir | -dd) DELDIR=t ;; |
1133 |
|
|
|
1134 |
jmc |
1.136 |
-use_r4|-ur4) USE_R4=t ;; |
1135 |
jmc |
1.135 |
|
1136 |
ce107 |
1.90 |
-ts) TS=t;; |
1137 |
|
|
-papis) PAPIS=t;; |
1138 |
|
|
-pcls) PCL=t;; |
1139 |
|
|
|
1140 |
jmc |
1.156 |
-*) echo "Error: unrecognized option: "$ac_option |
1141 |
|
|
usage ;; |
1142 |
|
|
*) echo "Error: unrecognized argument: "$ac_option |
1143 |
|
|
usage ;; |
1144 |
jmc |
1.135 |
|
1145 |
edhill |
1.1 |
esac |
1146 |
jmc |
1.135 |
|
1147 |
edhill |
1.1 |
done |
1148 |
|
|
|
1149 |
edhill |
1.10 |
if test "x$QUICK" = xt ; then |
1150 |
|
|
NOGENMAKE=t |
1151 |
|
|
NOCLEAN=t |
1152 |
|
|
NODEPEND=t |
1153 |
|
|
fi |
1154 |
|
|
|
1155 |
jmc |
1.156 |
#- check length of MPI machine file: |
1156 |
|
|
if test "x$MPI" != x0 -a "x$MPI_MFILE" != x ; then |
1157 |
|
|
if test -r $MPI_MFILE ; then |
1158 |
|
|
nl=`wc -l $MPI_MFILE | awk '{print $1}'` |
1159 |
|
|
if [ $nl -lt $MPI ] ; then |
1160 |
jmc |
1.175 |
echo "Error: need at least $MPI nodes (currently only $nl) in MPI_MFILE=$MPI_FILE" |
1161 |
|
|
usage |
1162 |
jmc |
1.156 |
fi |
1163 |
|
|
if [ $verbose -gt 1 ]; then |
1164 |
|
|
echo " MPI_MFILE=$MPI_MFILE : $nl procs for MPI=$MPI run" |
1165 |
|
|
fi |
1166 |
|
|
else |
1167 |
jmc |
1.175 |
echo "Error: cannot access MPI_MFILE=$MPI_FILE" |
1168 |
|
|
usage |
1169 |
jmc |
1.156 |
fi |
1170 |
|
|
fi |
1171 |
|
|
|
1172 |
jmc |
1.99 |
#- setting for forward or ADM testing |
1173 |
jmc |
1.175 |
if test $KIND = 1 ; then |
1174 |
|
|
TARG=ftlall |
1175 |
|
|
code_dir=code_ad |
1176 |
|
|
inputdir=input_ad |
1177 |
|
|
ref_outp="output_tlm.txt" |
1178 |
|
|
EXECUTABLE="mitgcmuv_ftl" |
1179 |
|
|
elif test $KIND = 2 ; then |
1180 |
jmc |
1.168 |
if test "x$TARG" = xobj ; then TARG=adobj ; else TARG=adall ; fi |
1181 |
jmc |
1.99 |
code_dir=code_ad |
1182 |
jmc |
1.108 |
inputdir=input_ad |
1183 |
jmc |
1.99 |
ref_outp="output_adm.txt" |
1184 |
|
|
EXECUTABLE="mitgcmuv_ad" |
1185 |
jmc |
1.175 |
elif test $KIND = 4 ; then |
1186 |
jmc |
1.168 |
TARG=adAll |
1187 |
utke |
1.120 |
code_dir=code_oad |
1188 |
|
|
inputdir=input_oad |
1189 |
|
|
ref_outp="output_oadm.txt" |
1190 |
|
|
EXECUTABLE="mitgcmuv_ad" |
1191 |
jmc |
1.99 |
else |
1192 |
jmc |
1.168 |
if test "x$JOBS" != x ; then TARG="-j $JOBS $TARG" ; fi |
1193 |
jmc |
1.99 |
code_dir=code |
1194 |
jmc |
1.108 |
inputdir=input |
1195 |
jmc |
1.99 |
ref_outp="output.txt" |
1196 |
|
|
EXECUTABLE="mitgcmuv" |
1197 |
|
|
fi |
1198 |
|
|
|
1199 |
jmc |
1.142 |
xx=`echo $TESTDIRS | awk '{print $1}'` |
1200 |
edhill |
1.1 |
if test "x$TESTDIRS" = x ; then |
1201 |
jmc |
1.103 |
LIST=`scandirs results/$ref_outp` |
1202 |
jmc |
1.142 |
elif test $xx = 'start_from' ; then |
1203 |
|
|
xx=`echo $TESTDIRS | awk '{print $2}'` |
1204 |
|
|
LIST=`scandirs results/$ref_outp | sed -n "/$xx/,$ p"` |
1205 |
jmc |
1.84 |
else |
1206 |
|
|
#- expand group of experiments: |
1207 |
|
|
LIST=" " |
1208 |
|
|
for xx in $TESTDIRS |
1209 |
|
|
do |
1210 |
|
|
case $xx in |
1211 |
jmc |
1.86 |
'basic') LIST=${LIST}" aim.5l_cs hs94.128x64x5 ideal_2D_oce" |
1212 |
|
|
LIST=${LIST}" lab_sea tutorial_baroclinic_gyre" |
1213 |
|
|
LIST=${LIST}" tutorial_global_oce_latlon tutorial_plume_on_slope" |
1214 |
jmc |
1.84 |
;; |
1215 |
|
|
'tutorials') |
1216 |
|
|
LIST=${LIST}" "`ls | grep 'tutorial_'` ;; |
1217 |
|
|
*) LIST=${LIST}" "$xx ;; |
1218 |
|
|
esac |
1219 |
jmc |
1.135 |
done |
1220 |
jmc |
1.89 |
fi |
1221 |
|
|
#echo 'LIST='${LIST}'<' |
1222 |
|
|
#- skip dirs, remove duplicate and non-directory: |
1223 |
|
|
TESTDIRS=" " |
1224 |
|
|
count=0 |
1225 |
|
|
for xx in $LIST |
1226 |
|
|
do |
1227 |
|
|
yy=`echo $SKIPDIRS | grep -c $xx` |
1228 |
|
|
if test $yy = 0 ; then |
1229 |
jmc |
1.84 |
if test -d $xx ; then |
1230 |
|
|
yy=`echo $TESTDIRS | grep -c $xx` |
1231 |
|
|
if test $yy = 0 ; then TESTDIRS=${TESTDIRS}" "$xx ; fi |
1232 |
jmc |
1.89 |
else count=1 ; |
1233 |
|
|
echo ""; echo -n " -- skip \"$xx\" (not a directory !)" |
1234 |
|
|
fi |
1235 |
|
|
else |
1236 |
jmc |
1.175 |
if test $count = 1 ; then echo -n ", \"$xx\"" |
1237 |
jmc |
1.89 |
else count=1 ; echo "" ; echo -n " skip: \"$xx\"" |
1238 |
jmc |
1.84 |
fi |
1239 |
jmc |
1.89 |
fi |
1240 |
jmc |
1.135 |
done |
1241 |
jmc |
1.89 |
if test $count = 1 ; then echo "" ; echo -n " ... " ; fi |
1242 |
jmc |
1.84 |
#echo 'TESTDIRS='${TESTDIRS}'<' |
1243 |
edhill |
1.1 |
|
1244 |
edhill |
1.10 |
if test "x$OPTFILE" = xNONE -a "x$MITGCM_OF" != x ; then |
1245 |
|
|
OPTFILE=$MITGCM_OF |
1246 |
|
|
fi |
1247 |
|
|
|
1248 |
jmc |
1.156 |
LOC_MFILE='tr_mpi_mfile' |
1249 |
jmc |
1.146 |
RUNLOG="run.tr_log" |
1250 |
jmc |
1.99 |
OUTPUTFILE=$ref_outp |
1251 |
jmc |
1.87 |
if test "x$COMMAND" = x ; then |
1252 |
jmc |
1.77 |
COMMAND="./$EXECUTABLE > $OUTPUTFILE" |
1253 |
edhill |
1.24 |
fi |
1254 |
jmc |
1.154 |
if test "x$MPI" != x0 ; then |
1255 |
jmc |
1.87 |
OUTPUTFILE="STDOUT.0000" |
1256 |
edhill |
1.24 |
fi |
1257 |
|
|
|
1258 |
jmc |
1.76 |
echo "OK (COMMAND= $COMMAND )" |
1259 |
edhill |
1.1 |
|
1260 |
jmc |
1.94 |
# set the Default List of output variables to be checked: |
1261 |
|
|
# (use default or load experiment-specific list from file "tr_checklist") |
1262 |
|
|
# content : 1rst = main variable used to decide if it pass or FAIL |
1263 |
|
|
# others = number of matching digits to be printed in summary.txt |
1264 |
jmc |
1.175 |
if test $KIND = 1 ; then |
1265 |
|
|
DEF_CHECK_LIST='tlmGrd tlmCst tlmGrd fwdGrd' |
1266 |
|
|
EMPTY_RESULTS='.. .. ..' |
1267 |
|
|
LEN_CHECK_LIST=`echo $DEF_CHECK_LIST | sed 's/ [a-zA-Z0-9]*+/&mn &mx &av &sd/g' | awk '{print NF-1}'` |
1268 |
|
|
elif test $KIND = 2 -o $KIND = 4 ; then |
1269 |
|
|
DEF_CHECK_LIST='AdGrd Cost AdGrd FDGrd' |
1270 |
|
|
EMPTY_RESULTS='.. .. ..' |
1271 |
|
|
LEN_CHECK_LIST=`echo $DEF_CHECK_LIST | sed 's/ [a-zA-Z0-9]*+/&mn &mx &av &sd/g' | awk '{print NF-1}'` |
1272 |
|
|
else |
1273 |
jmc |
1.94 |
DEF_CHECK_LIST='PS PS T+ S+ U+ V+ pt1+ pt2+ pt3+ pt4+ pt5+' |
1274 |
|
|
EMPTY_RESULTS='.. .. .. .. .. .. .. .. .. .. .. .. .. .. .. .. ..' |
1275 |
jmc |
1.97 |
LEN_CHECK_LIST=`echo $DEF_CHECK_LIST | sed 's/ [a-zA-Z0-9]*+/&mn &mx &av &sd/g' | awk '{print NF-1}'` |
1276 |
jmc |
1.94 |
ii=`echo $EMPTY_RESULTS | awk '{print NF}'` |
1277 |
jmc |
1.97 |
EMPTY_RESULTS=$EMPTY_RESULTS`expr $LEN_CHECK_LIST - $ii | awk 'BEGIN{FS=":"}{for(i=1;i<=$1;i++){printf " ."}}'` |
1278 |
jmc |
1.94 |
fi |
1279 |
|
|
|
1280 |
edhill |
1.1 |
# create the FORTRAN comparison code |
1281 |
jmc |
1.133 |
if test -x tr_cmpnum ; then |
1282 |
|
|
echo "skipping comparison code build" |
1283 |
|
|
else |
1284 |
|
|
createcodelet |
1285 |
|
|
fi |
1286 |
edhill |
1.1 |
|
1287 |
jmc |
1.112 |
# build the mpack utility (if ADDRESSES = NONE, do it to test the build) |
1288 |
|
|
if test "x$ADDRESSES" = x ; then |
1289 |
edhill |
1.32 |
echo "skipping mpack build" |
1290 |
|
|
else |
1291 |
edhill |
1.31 |
build_mpack |
1292 |
|
|
fi |
1293 |
edhill |
1.1 |
|
1294 |
|
|
# Create a uniquely named directory to store results |
1295 |
jmc |
1.110 |
CMDLINE=$0 |
1296 |
jmc |
1.118 |
for xx in "$@" ; do nw=`echo $xx | wc -w` |
1297 |
|
|
if test $nw = '1' ; then CMDLINE="$CMDLINE $xx" |
1298 |
|
|
else CMDLINE="$CMDLINE '$xx'" ; fi |
1299 |
|
|
done |
1300 |
|
|
#for xx in "$@" ; do CMDLINE="$CMDLINE '$xx'" ; done |
1301 |
edhill |
1.1 |
MACH=`hostname` |
1302 |
edhill |
1.2 |
UNAMEA=`uname -a` |
1303 |
edhill |
1.1 |
DATE=`date +%Y%m%d` |
1304 |
edhill |
1.25 |
BASE="tr_"$MACH"_"$DATE"_" |
1305 |
jmc |
1.70 |
if test "x$OUTDIR" != x ; then |
1306 |
|
|
BASE="tr_"$OUTDIR"_"$DATE"_" |
1307 |
jmc |
1.121 |
else |
1308 |
|
|
short_name=`hostname | sed 's/\..*$//'` |
1309 |
|
|
BASE="tr_"$short_name"_"$DATE"_" |
1310 |
jmc |
1.70 |
fi |
1311 |
edhill |
1.1 |
DNUM=0 |
1312 |
|
|
DRESULTS="$BASE$DNUM" |
1313 |
|
|
while test -e $DRESULTS ; do |
1314 |
|
|
DNUM=$(( $DNUM + 1 )) |
1315 |
|
|
DRESULTS="$BASE$DNUM" |
1316 |
|
|
done |
1317 |
|
|
mkdir $DRESULTS |
1318 |
|
|
RETVAL=$? |
1319 |
|
|
if test "x$RETVAL" != x0 ; then |
1320 |
edhill |
1.20 |
echo "ERROR: Can't create results directory \"./$DRESULTS\"" |
1321 |
edhill |
1.1 |
exit 1 |
1322 |
|
|
fi |
1323 |
|
|
SUMMARY="$DRESULTS/summary.txt" |
1324 |
edhill |
1.16 |
start_date=`date` |
1325 |
edhill |
1.17 |
echo $start_date > $SUMMARY |
1326 |
jmc |
1.110 |
echo 'run:' $CMDLINE >> $SUMMARY |
1327 |
|
|
echo 'on :' $UNAMEA >> $SUMMARY |
1328 |
edhill |
1.1 |
|
1329 |
edhill |
1.11 |
of_path= |
1330 |
edhill |
1.10 |
if test "x$OPTFILE" != xNONE ; then |
1331 |
|
|
if test -r $OPTFILE ; then |
1332 |
edhill |
1.11 |
# get the path |
1333 |
|
|
path=${OPTFILE%/*} |
1334 |
|
|
if test "x$path" = x ; then |
1335 |
|
|
of_path=`pwd` |
1336 |
|
|
else |
1337 |
|
|
of_path=`( cd $path > /dev/null 2>&1 ; pwd )` |
1338 |
|
|
fi |
1339 |
|
|
file=${OPTFILE##*/} |
1340 |
|
|
OPTFILE=$of_path/$file |
1341 |
edhill |
1.21 |
cp $OPTFILE $DRESULTS |
1342 |
|
|
echo >> $SUMMARY |
1343 |
|
|
echo " OPTFILE=$OPTFILE" >> $SUMMARY |
1344 |
edhill |
1.11 |
else |
1345 |
edhill |
1.21 |
echo | tee $SUMMARY |
1346 |
|
|
echo "ERROR: can't read OPTFILE=\"$OPTFILE\"" | tee $SUMMARY |
1347 |
|
|
exit 1 |
1348 |
edhill |
1.10 |
fi |
1349 |
edhill |
1.21 |
else |
1350 |
|
|
echo >> $SUMMARY |
1351 |
jmc |
1.152 |
echo "No \"OPTFILE\" was specified ; genmake2 found and uses:" >> $SUMMARY |
1352 |
|
|
#-note: to be filled later after 1rst run |
1353 |
edhill |
1.10 |
fi |
1354 |
|
|
echo |
1355 |
|
|
echo >> $SUMMARY |
1356 |
jmc |
1.175 |
if test $KIND = 0 ; then |
1357 |
|
|
line_0=`printf '%s %2i' 'default' $MATCH_CRIT` |
1358 |
jmc |
1.94 |
line_0="$line_0 ----T----- ----S----- ----U----- ----V-----" |
1359 |
edhill |
1.49 |
line_1="G D M c m s m s m s m s" |
1360 |
jmc |
1.167 |
line_2="e p a R g m m e . m m e . m m e . m m e ." |
1361 |
|
|
line_3="n n k u 2 i a a d i a a d i a a d i a a d" |
1362 |
edhill |
1.49 |
line_4="2 d e n d n x n . n x n . n x n . n x n ." |
1363 |
edhill |
1.50 |
for ii in $PTRACERS_NUM ; do |
1364 |
edhill |
1.49 |
line_0="$line_0 --PTR 0"$ii"--" |
1365 |
|
|
line_1="$line_1 m s" |
1366 |
|
|
line_2="$line_2 m m e ." |
1367 |
|
|
line_3="$line_3 i a a d" |
1368 |
|
|
line_4="$line_4 n x n ." |
1369 |
|
|
done |
1370 |
jmc |
1.175 |
else |
1371 |
|
|
line_0=`printf '%s %2i' 'default ' $MATCH_CRIT` |
1372 |
|
|
if test $KIND = 1 ; then |
1373 |
|
|
echo "TANGLIN=true" >> $SUMMARY |
1374 |
|
|
line_1="G D M C T F" |
1375 |
|
|
line_2="e p a R o L D" |
1376 |
|
|
else |
1377 |
|
|
echo "ADJOINT=true" >> $SUMMARY |
1378 |
|
|
line_1="G D M C A F" |
1379 |
|
|
line_2="e p a R o d D" |
1380 |
|
|
fi |
1381 |
|
|
line_3="n n k u s G G" |
1382 |
|
|
line_4="2 d e n t r r" |
1383 |
|
|
echo >> $SUMMARY |
1384 |
|
|
fi |
1385 |
edhill |
1.49 |
echo "$line_0" | tee -a $SUMMARY |
1386 |
|
|
echo "$line_1" | tee -a $SUMMARY |
1387 |
|
|
echo "$line_2" | tee -a $SUMMARY |
1388 |
|
|
echo "$line_3" | tee -a $SUMMARY |
1389 |
|
|
echo "$line_4" | tee -a $SUMMARY |
1390 |
jmc |
1.175 |
echo "" | tee -a $SUMMARY |
1391 |
jmc |
1.139 |
echo "-------------------------------------------------------------------------------" |
1392 |
edhill |
1.1 |
|
1393 |
edhill |
1.10 |
# ...and each test directory... |
1394 |
|
|
for dir in $TESTDIRS ; do |
1395 |
jmc |
1.135 |
|
1396 |
jmc |
1.106 |
# set builddir & rundir: |
1397 |
|
|
builddir="build" |
1398 |
|
|
if test ! -d $dir/$builddir ; then mkdir $dir/$builddir ; fi |
1399 |
|
|
rundir="run" |
1400 |
jmc |
1.143 |
pfxdir="tr_$rundir" |
1401 |
jmc |
1.106 |
if test ! -d $dir/$rundir ; then |
1402 |
|
|
rundir=$builddir |
1403 |
|
|
fi |
1404 |
|
|
CODE_DIR=$dir/$code_dir |
1405 |
|
|
BUILD_DIR=$dir/$builddir |
1406 |
|
|
|
1407 |
edhill |
1.10 |
# Cleanup only! |
1408 |
|
|
if test "x$CLEANUP" = xt ; then |
1409 |
jmc |
1.127 |
echo -n ' --- dir:' $BUILD_DIR ': ' |
1410 |
|
|
makeclean $BUILD_DIR |
1411 |
jmc |
1.145 |
( cd $BUILD_DIR |
1412 |
|
|
rm -f $EXECUTABLE *.bak |
1413 |
jmc |
1.146 |
rm -f genmake_state genmake_*optfile genmake.log |
1414 |
jmc |
1.154 |
rm -f SIZE.h.mpi genmake.tr_log make.tr_log |
1415 |
jmc |
1.145 |
) |
1416 |
jmc |
1.106 |
if test -d $dir/$rundir/CVS ; then |
1417 |
jmc |
1.175 |
echo -n ' --- dir:' $dir/$rundir ': ' |
1418 |
jmc |
1.106 |
run_clean $dir/$rundir |
1419 |
edhill |
1.10 |
fi |
1420 |
jmc |
1.143 |
trdir=`( cd $dir ; find . -type d -name "$pfxdir.*" -print | sed 's/^.\///')` |
1421 |
jmc |
1.127 |
ttd=`echo $trdir | wc -w` |
1422 |
|
|
if test $ttd != 0 ; then |
1423 |
|
|
echo ' --- rm dir:' $trdir |
1424 |
|
|
( cd $dir ; rm -rf $trdir ) |
1425 |
|
|
fi |
1426 |
edhill |
1.10 |
continue |
1427 |
edhill |
1.1 |
fi |
1428 |
edhill |
1.3 |
|
1429 |
jmc |
1.135 |
# Verify that the testdir exists and contains previous |
1430 |
edhill |
1.10 |
# results in the correct location--or skip this directory! |
1431 |
jmc |
1.104 |
fout=$dir"/results/"$ref_outp |
1432 |
jmc |
1.175 |
#if test ! -r $fout ; then |
1433 |
|
|
if test ! -r $fout -a ! -r ${fout}.gz ; then |
1434 |
edhill |
1.24 |
echo "can't read \"$fout\" -- skipping $dir" |
1435 |
edhill |
1.10 |
continue |
1436 |
|
|
fi |
1437 |
edhill |
1.7 |
|
1438 |
jmc |
1.117 |
# Check for specific files for particular type of run |
1439 |
edhill |
1.49 |
|
1440 |
jmc |
1.161 |
if test ! -r $CODE_DIR"/SIZE.h_mpi" -a "x$MPI" != "x0" ; then |
1441 |
|
|
echo "can't find \"$CODE_DIR/SIZE.h_mpi\" -- skipping $dir" |
1442 |
|
|
continue |
1443 |
|
|
fi |
1444 |
|
|
if test ! -r $dir"/input/eedata.mth" -a "x$MULTI_THREAD" = "xt" ; then |
1445 |
|
|
echo "can't find \"$dir/input/eedata.mth\" -- skipping $dir" |
1446 |
|
|
continue |
1447 |
|
|
fi |
1448 |
|
|
|
1449 |
jmc |
1.154 |
if test "x$MPI" != "x0" ; then |
1450 |
jmc |
1.173 |
ntx=1 ; nty=1 |
1451 |
jmc |
1.161 |
if test "x$MULTI_THREAD" = "xt" ; then |
1452 |
jmc |
1.174 |
ff=$dir"/input/eedata.mth" |
1453 |
|
|
ntx=`grep "^ *nTx *=" $ff | tail -1 | sed 's/^ *nTx *= *//' | sed "s/, *$//"` |
1454 |
|
|
nty=`grep "^ *nTy *=" $ff | tail -1 | sed 's/^ *nTy *= *//' | sed "s/, *$//"` |
1455 |
|
|
if test "x$ntx" = x ; then ntx=1 ; fi |
1456 |
|
|
if test "x$nty" = x ; then nty=1 ; fi |
1457 |
jmc |
1.161 |
fi |
1458 |
|
|
#- create new SIZE.h with no more than '$MPI' Procs |
1459 |
jmc |
1.173 |
mk_mpi_size $CODE_DIR"/SIZE.h_mpi" $BUILD_DIR"/tr_size.mpi" $MPI $ntx $nty |
1460 |
jmc |
1.161 |
LOC_NPROC=$? |
1461 |
|
|
( cd $BUILD_DIR |
1462 |
|
|
if test -r SIZE.h.mpi ; then |
1463 |
|
|
cmp tr_size.mpi SIZE.h.mpi > /dev/null 2>&1 ; RETVAL=$? |
1464 |
|
|
else RETVAL=1 |
1465 |
|
|
fi |
1466 |
|
|
if test "x$RETVAL" = x0 ; then |
1467 |
|
|
rm -f tr_size.mpi |
1468 |
|
|
else |
1469 |
|
|
rm -f SIZE.h.mpi ; mv tr_size.mpi SIZE.h.mpi |
1470 |
|
|
fi |
1471 |
|
|
) |
1472 |
jmc |
1.156 |
if test "x$MPI_MFILE" != x ; then |
1473 |
|
|
#- create new MPI machine-file with the right number of Procs |
1474 |
|
|
rm -f $LOC_MFILE |
1475 |
|
|
cat $MPI_MFILE | sort | uniq | head -$LOC_NPROC > $LOC_MFILE |
1476 |
|
|
nl=`wc -l $LOC_MFILE | awk '{print $1}'` |
1477 |
|
|
if [ $nl -lt $LOC_NPROC ] ; then |
1478 |
|
|
rm -f $LOC_MFILE |
1479 |
|
|
cat $MPI_MFILE | head -$LOC_NPROC > $LOC_MFILE |
1480 |
|
|
#sed -n "1,$LOC_NPROC p" $MPI_MFILE > $LOC_MFILE |
1481 |
|
|
fi |
1482 |
|
|
if [ $verbose -gt 1 ]; then |
1483 |
|
|
nl=`wc -l $LOC_MFILE | awk '{print $1}'` |
1484 |
|
|
echo " new LOC_MFILE=$LOC_MFILE : $nl procs for LOC_NPROC=$LOC_NPROC" |
1485 |
|
|
fi |
1486 |
|
|
fi |
1487 |
jmc |
1.161 |
if test "x$MULTI_THREAD" = "xt" ; then |
1488 |
|
|
retv=`check_eedata $dir"/input/eedata.mth" $BUILD_DIR"/SIZE.h.mpi"` |
1489 |
|
|
if test $retv != 0 ; then |
1490 |
|
|
echo "input/eedata.mth tiling misfit -- skipping $dir" |
1491 |
|
|
continue |
1492 |
|
|
fi |
1493 |
jmc |
1.154 |
fi |
1494 |
jmc |
1.123 |
fi |
1495 |
jmc |
1.83 |
|
1496 |
|
|
# Check whether there are "extra runs" for this testdir |
1497 |
|
|
extra_runs= |
1498 |
jmc |
1.133 |
if test "x$NORUN" = xf ; then |
1499 |
|
|
ex_run_dirs=`( cd $dir ; echo $inputdir.* )` |
1500 |
|
|
fi |
1501 |
jmc |
1.108 |
#echo "ex_run_dirs='$ex_run_dirs'" |
1502 |
|
|
for exd in $ex_run_dirs ; do |
1503 |
|
|
name=`echo $exd | sed -e "s/$inputdir\.//"` |
1504 |
|
|
refExOut=`echo $ref_outp | sed "s/\./.${name}./"` |
1505 |
|
|
outf="$dir/results/$refExOut" |
1506 |
jmc |
1.175 |
#if test -f $outf -a -r $outf ; then |
1507 |
|
|
if test -r $outf -o -r ${outf}.gz ; then |
1508 |
jmc |
1.135 |
if test "x$MULTI_THREAD" = "xt" ; then |
1509 |
jmc |
1.123 |
if test -r $dir"/"$exd"/eedata.mth" ; then |
1510 |
jmc |
1.154 |
if test "x$MPI" = "x0" ; then |
1511 |
|
|
extra_runs="$extra_runs $name" |
1512 |
|
|
else |
1513 |
jmc |
1.161 |
retv=`check_eedata $dir"/"$exd"/eedata.mth" $BUILD_DIR"/SIZE.h.mpi"` |
1514 |
jmc |
1.123 |
if test $retv = 0 ; then |
1515 |
jmc |
1.83 |
extra_runs="$extra_runs $name" |
1516 |
jmc |
1.123 |
else |
1517 |
|
|
echo $exd"/eedata.mth tiling misfit -- skipping $dir" |
1518 |
jmc |
1.83 |
fi |
1519 |
jmc |
1.123 |
fi |
1520 |
|
|
#else echo $dir"/"$exd"/eedata.mth: not found" |
1521 |
jmc |
1.83 |
fi |
1522 |
jmc |
1.123 |
else |
1523 |
|
|
extra_runs="$extra_runs $name" |
1524 |
|
|
fi |
1525 |
jmc |
1.108 |
fi |
1526 |
|
|
done |
1527 |
edhill |
1.28 |
|
1528 |
|
|
echo |
1529 |
jmc |
1.135 |
if test "x$extra_runs" = "x" ; then |
1530 |
jmc |
1.175 |
echo "Experiment: $dir" |
1531 |
jmc |
1.83 |
else |
1532 |
jmc |
1.175 |
echo "Experiment: $dir ; extra_runs=$extra_runs" |
1533 |
jmc |
1.83 |
fi |
1534 |
edhill |
1.28 |
echo |
1535 |
|
|
unset genmake makedepend make run |
1536 |
jmc |
1.94 |
results=$EMPTY_RESULTS |
1537 |
edhill |
1.10 |
|
1538 |
jmc |
1.158 |
# Create an output dir & summary.txt file for each tested experiment (tdir) |
1539 |
jmc |
1.138 |
locDIR=$DRESULTS"/"$dir |
1540 |
|
|
mkdir $locDIR |
1541 |
jmc |
1.158 |
#- report to this experiment local summary file --- |
1542 |
|
|
echo "DATE='$DATE' ; tdir='$dir'" > $locDIR"/summary.txt" |
1543 |
|
|
echo "MACH='$MACH'" >> $locDIR"/summary.txt" |
1544 |
|
|
echo "UNAMEA='$UNAMEA'" >> $locDIR"/summary.txt" |
1545 |
jmc |
1.138 |
CDIR=`pwd`"/$locDIR" |
1546 |
jmc |
1.135 |
|
1547 |
jmc |
1.133 |
if test "x$NORUN" = xt ; then |
1548 |
|
|
run=N |
1549 |
|
|
genmakemodel $dir/$builddir && genmake=Y \ |
1550 |
|
|
&& makeclean $dir/$builddir \ |
1551 |
jmc |
1.175 |
&& symlink_mpifiles $dir $code_dir $builddir \ |
1552 |
jmc |
1.133 |
&& makedependmodel $dir/$builddir && makedepend=Y \ |
1553 |
|
|
&& makemodel $dir/$builddir && make=Y |
1554 |
edhill |
1.10 |
else |
1555 |
edhill |
1.1 |
genmakemodel $dir/$builddir && genmake=Y \ |
1556 |
|
|
&& makeclean $dir/$builddir \ |
1557 |
jmc |
1.175 |
&& symlink_mpifiles $dir $code_dir $builddir \ |
1558 |
edhill |
1.1 |
&& makedependmodel $dir/$builddir && makedepend=Y \ |
1559 |
|
|
&& makemodel $dir/$builddir && make=Y \ |
1560 |
jmc |
1.139 |
&& run_clean $dir/$rundir \ |
1561 |
jmc |
1.140 |
&& linkdata $dir/$rundir $inputdir \ |
1562 |
edhill |
1.12 |
&& runmodel $dir/$rundir && run=Y \ |
1563 |
jmc |
1.99 |
&& results=`testoutput_run $dir $rundir $ref_outp` |
1564 |
edhill |
1.10 |
fi |
1565 |
jmc |
1.139 |
#echo "results='$results'" |
1566 |
jmc |
1.135 |
|
1567 |
edhill |
1.24 |
fres=`formatresults $dir ${genmake:-N} ${makedepend:-N} ${make:-N} ${run:-N} $results` |
1568 |
jmc |
1.139 |
echo 1>&2 |
1569 |
jmc |
1.175 |
echo "$fres" | sed 's/ 99/ --/g' | sed 's/ > />/' | sed 's/ < /</' >> $SUMMARY |
1570 |
jmc |
1.138 |
echo "fresults='$fres'" | sed 's/ 99/ --/g' >> $locDIR"/summary.txt" |
1571 |
edhill |
1.34 |
|
1572 |
|
|
for ex in $extra_runs ; do |
1573 |
jmc |
1.73 |
unset run |
1574 |
jmc |
1.175 |
results=$EMPTY_RESULTS |
1575 |
jmc |
1.106 |
# reference output file |
1576 |
|
|
refExOut=`echo $ref_outp | sed "s/\./.${ex}./g"` |
1577 |
jmc |
1.158 |
# Create an output dir & summary.txt file for each extra run (tdir.ex) |
1578 |
jmc |
1.138 |
locDIR=$DRESULTS"/"$dir"."$ex |
1579 |
|
|
mkdir $locDIR |
1580 |
jmc |
1.158 |
#- report to this experiment local summary file --- |
1581 |
|
|
echo "DATE='$DATE' ; tdir='$dir.$ex'" > $locDIR"/summary.txt" |
1582 |
|
|
#echo "MACH='$MACH'" >> $locDIR"/summary.txt" |
1583 |
|
|
#echo "UNAMEA='$UNAMEA'" >> $locDIR"/summary.txt" |
1584 |
jmc |
1.138 |
CDIR=`pwd`"/$locDIR" |
1585 |
jmc |
1.143 |
test ! -e "$dir/$pfxdir.$ex" && mkdir "$dir/$pfxdir.$ex" |
1586 |
|
|
run_clean $dir/$pfxdir.$ex |
1587 |
|
|
linkdata $dir/$pfxdir.$ex $inputdir.$ex $inputdir |
1588 |
|
|
runmodel $dir/$pfxdir.$ex && run=Y \ |
1589 |
|
|
&& results=`testoutput_run $dir $pfxdir.$ex $refExOut` |
1590 |
edhill |
1.34 |
fres=`formatresults $dir ${genmake:-N} ${makedepend:-N} ${make:-N} ${run:-N} $results` |
1591 |
|
|
fres="$fres.$ex" |
1592 |
jmc |
1.139 |
echo 1>&2 |
1593 |
jmc |
1.100 |
echo "$fres" | sed 's/ 99/ --/g' | sed 's/ > />/' | sed 's/ < /</' >> $SUMMARY |
1594 |
jmc |
1.138 |
echo "fresults='$fres'" | sed 's/ 99/ --/g' >> $locDIR"/summary.txt" |
1595 |
jmc |
1.156 |
if test "x$POSTCLEAN" = x2 ; then |
1596 |
jmc |
1.143 |
run_clean $dir/$pfxdir.$ex |
1597 |
jmc |
1.83 |
fi |
1598 |
edhill |
1.34 |
done |
1599 |
edhill |
1.68 |
|
1600 |
jmc |
1.139 |
if test -f $DRESULTS"/"genmake_state ; then : ; else |
1601 |
jmc |
1.137 |
if test -f $dir/$builddir/Makefile ; then |
1602 |
|
|
mkOpt=`grep '^# OPTFILE=' $dir/$builddir/Makefile 2>/dev/null | head -1 | sed 's/^# //'` |
1603 |
|
|
echo "from '$dir/$builddir/Makefile', extract:" > $DRESULTS/genmake_state |
1604 |
|
|
sed -n '/^# executed by:/,+1 p' $dir/$builddir/Makefile >> $DRESULTS/genmake_state |
1605 |
jmc |
1.151 |
echo " $mkOpt" >> $DRESULTS/genmake_state |
1606 |
jmc |
1.152 |
if test "x$OPTFILE" = xNONE ; then |
1607 |
|
|
eval $mkOpt |
1608 |
|
|
sed "/^No \"OPTFILE\" was specified ; genmake2/a\ OPTFILE=${OPTFILE}"\ |
1609 |
|
|
$SUMMARY > tr_0.tmp_log |
1610 |
|
|
RETVAL=$? |
1611 |
|
|
if test "x$RETVAL" = x0 ; then rm -f $SUMMARY |
1612 |
|
|
cp tr_0.tmp_log $SUMMARY |
1613 |
|
|
else rm -f tr_0.tmp_log |
1614 |
|
|
fi |
1615 |
|
|
fi |
1616 |
jmc |
1.150 |
gmkLog=$dir/$builddir/genmake.log |
1617 |
|
|
grep '^Get compiler version using:' $gmkLog > /dev/null 2>&1 |
1618 |
|
|
RETVAL=$? |
1619 |
|
|
if test "x$RETVAL" = x0 ; then |
1620 |
|
|
echo "from '$gmkLog', extract compiler version:" >> $DRESULTS/genmake_state |
1621 |
jmc |
1.151 |
sed -n '/Get compiler version/,/<-- compiler version/p' $gmkLog \ |
1622 |
jmc |
1.166 |
| grep -v '^... compiler version ' > tr_1.tmp_log |
1623 |
|
|
sed -n '1p' tr_1.tmp_log >> $DRESULTS/genmake_state |
1624 |
|
|
sed -n '2,/^$/p' tr_1.tmp_log | sed '/^$/d' | sed 's/^./ &/' \ |
1625 |
jmc |
1.151 |
>> $DRESULTS/genmake_state |
1626 |
jmc |
1.152 |
rm -f tr_1.tmp_log |
1627 |
jmc |
1.150 |
fi |
1628 |
jmc |
1.137 |
fi |
1629 |
|
|
fi |
1630 |
jmc |
1.83 |
#postclean $dir/$builddir |
1631 |
jmc |
1.156 |
if test "x$POSTCLEAN" = x2 ; then |
1632 |
jmc |
1.175 |
makeclean $dir/$builddir \ |
1633 |
|
|
&& run_clean $dir/$rundir |
1634 |
jmc |
1.83 |
fi |
1635 |
jmc |
1.156 |
if test "x$MPI" != x0 -a "x$MPI_MFILE" != x ; then rm -f $LOC_MFILE ; fi |
1636 |
jmc |
1.135 |
|
1637 |
edhill |
1.10 |
echo "-------------------------------------------------------------------------------" |
1638 |
jmc |
1.135 |
|
1639 |
edhill |
1.1 |
done |
1640 |
|
|
|
1641 |
edhill |
1.34 |
printf "Start time: " >> $SUMMARY |
1642 |
jmc |
1.114 |
echo "$start_date" >> $SUMMARY |
1643 |
edhill |
1.34 |
printf "End time: " >> $SUMMARY |
1644 |
edhill |
1.13 |
date >> $SUMMARY |
1645 |
edhill |
1.20 |
|
1646 |
|
|
# If addresses were supplied and mpack built successfully, then try |
1647 |
|
|
# to send email using mpack. |
1648 |
|
|
if test "x$ADDRESSES" = xNONE -o "x$ADDRESSES" = x ; then |
1649 |
|
|
echo "No results email was sent." |
1650 |
|
|
else |
1651 |
|
|
if test "x$HAVE_MPACK" = xt ; then |
1652 |
|
|
tar -cf $DRESULTS".tar" $DRESULTS > /dev/null 2>&1 \ |
1653 |
|
|
&& gzip $DRESULTS".tar" \ |
1654 |
edhill |
1.44 |
&& $MPACK -s MITgcm-test -m 3555000 $DRESULTS".tar.gz" $ADDRESSES |
1655 |
edhill |
1.20 |
RETVAL=$? |
1656 |
|
|
if test "x$RETVAL" != x0 ; then |
1657 |
|
|
echo |
1658 |
|
|
echo "Warning: The tar, gzip, & mpack step failed. Please send email" |
1659 |
|
|
echo " to <MITgcm-support@mitgcm.org> for help. You may copy the " |
1660 |
|
|
echo " summary of results from the directory \"$DRESULTS\"." |
1661 |
|
|
echo |
1662 |
|
|
else |
1663 |
|
|
echo |
1664 |
|
|
echo "An email containing results was sent to the following addresses:" |
1665 |
|
|
echo " \"$ADDRESSES\"" |
1666 |
|
|
echo |
1667 |
jmc |
1.129 |
test -f $DRESULTS".tar" && rm -f $DRESULTS".tar" |
1668 |
|
|
test -f $DRESULTS".tar.gz" && rm -f $DRESULTS".tar.gz" |
1669 |
edhill |
1.20 |
fi |
1670 |
|
|
fi |
1671 |
|
|
fi |
1672 |
edhill |
1.13 |
|
1673 |
jmc |
1.133 |
if test "x$QUICK" = xf -a "x$NORUN" = xf ; then |
1674 |
|
|
rm -f tr_cmpnum.c tr_cmpnum |
1675 |
|
|
fi |
1676 |
edhill |
1.1 |
|
1677 |
edhill |
1.12 |
if test "x$CLEANUP" != xt ; then |
1678 |
jmc |
1.102 |
cat $SUMMARY | sed 's/ \. \. \. \. \. \. \. \. \. \. \. \. //' |
1679 |
edhill |
1.25 |
if test -e tr_out.txt ; then |
1680 |
jmc |
1.175 |
mv tr_out.txt tr_out.txt.old |
1681 |
edhill |
1.14 |
fi |
1682 |
jmc |
1.103 |
cat $SUMMARY | sed '/^[YN] [YN] [YN] [YN]/ s/ \. //g' > tr_out.txt |
1683 |
edhill |
1.12 |
fi |
1684 |
edhill |
1.1 |
|
1685 |
edhill |
1.40 |
if test "x$DELDIR" = xt ; then |
1686 |
|
|
rm -rf $DRESULTS |
1687 |
|
|
fi |