1 |
edhill |
1.19 |
#! /usr/bin/env bash |
2 |
edhill |
1.1 |
# |
3 |
jmc |
1.161 |
# $Header: /u/gcmpack/MITgcm/verification/testreport,v 1.160 2011/03/29 11:51:20 jmc Exp $ |
4 |
edhill |
1.12 |
# $Name: $ |
5 |
edhill |
1.1 |
# |
6 |
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7 |
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usage() |
8 |
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{ |
9 |
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echo |
10 |
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echo "Usage: $0 [OPTIONS]" |
11 |
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echo |
12 |
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echo "where possible OPTIONS are:" |
13 |
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echo " (-help|-h) print usage" |
14 |
jmc |
1.122 |
echo " (-mth) run multi-threaded (using eedata.mth)" |
15 |
jmc |
1.154 |
echo " (-mpi) use MPI to compile and run on 2 processors" |
16 |
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echo " (-MPI) NUMBER use MPI to compile and run on max NUMBER procs" |
17 |
jmc |
1.156 |
echo " (-mfile|-mf) STRING MPI: file with list of possible machines to run on" |
18 |
jmc |
1.136 |
echo " (-ieee/-noieee) if possible, use IEEE compiler flags" |
19 |
edhill |
1.41 |
echo " (DEF=\"-ieee\")" |
20 |
jmc |
1.109 |
echo " (-gsl) compile with \"-gsl\" flag" |
21 |
jmc |
1.136 |
echo " (-use_r4|-ur4) if allowed, use real*4 type for '_RS' variable" |
22 |
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echo " (-optfile|-of) STRING list of optfiles to use" |
23 |
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echo " (-addr|-a) STRING list of email recipients" |
24 |
jmc |
1.108 |
echo " (DEF=\"\" no email is sent)" |
25 |
jmc |
1.136 |
echo " (-mpackdir|-mpd) DIR location of the mpack utility" |
26 |
jmc |
1.113 |
echo " (DEF=\"../tools/mpack-1.6\")" |
27 |
jmc |
1.136 |
echo " (-tdir|-t) STRING list of group and/or exp. dirs to test" |
28 |
jmc |
1.84 |
echo " (recognized groups: basic, tutorials)" |
29 |
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echo " (DEF=\"\" which test all)" |
30 |
jmc |
1.149 |
echo " (if list= 'start_from THIS_EXP' then" |
31 |
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echo " test THIS_EXP + all the following)" |
32 |
jmc |
1.136 |
echo " (-skipdir|-skd) STRING list of exp. dirs to skip" |
33 |
jmc |
1.89 |
echo " (DEF=\"\" which test all)" |
34 |
jmc |
1.136 |
echo " (-bash|-b) STRING preferred location of a \"bash\" or" |
35 |
edhill |
1.20 |
echo " Bourne-compatible \"sh\" shell" |
36 |
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echo " (DEF=\"\" for \"bash\")" |
37 |
edhill |
1.24 |
echo " (-adm|-ad) perform an adjoint run" |
38 |
utke |
1.120 |
echo " (-oad) perform an OpenAD adjoint run" |
39 |
jmc |
1.136 |
echo " (-command|-c) STRING command to run" |
40 |
jmc |
1.141 |
echo " (-makedepend|-md) STRING command to use for \"makedepend\"" |
41 |
jmc |
1.136 |
echo " (-make|-m) STRING command to use for \"make\"" |
42 |
edhill |
1.8 |
echo " (DEF=\"make\")" |
43 |
jmc |
1.70 |
echo " (-odir) STRING used to build output directory name" |
44 |
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echo " (DEF=\"hostname\")" |
45 |
jmc |
1.156 |
# echo " (-ptracers|-ptr) STRING specify which ptracers to test" |
46 |
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# echo " (DEF=\"1 2 3 4 5\")" |
47 |
jmc |
1.92 |
echo " (-match) NUMBER Matching Criteria (number of digits)" |
48 |
jmc |
1.141 |
echo " (DEF=\"$MATCH_CRIT\")" |
49 |
edhill |
1.43 |
echo " (-j) JOBS use \"make -j JOBS\" for parallel builds" |
50 |
jmc |
1.156 |
echo " (-clean) *ONLY* run \"make CLEAN\" & clean run-dir" |
51 |
jmc |
1.133 |
echo " (-norun|-nr) skip the \"runmodel\" stage (stop after make)" |
52 |
jmc |
1.136 |
echo " (-runonly|-ro) *ONLY* run stage (=\"-quick\" without make)" |
53 |
ce107 |
1.90 |
echo " (-quick|-q) same as \"-nogenmake -noclean -nodepend\"" |
54 |
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echo " (-nogenmake|-ng) skip the genmake stage" |
55 |
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echo " (-noclean|-nc) skip the \"make clean\" stage" |
56 |
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echo " (-nodepend|-nd) skip the \"make depend\" stage" |
57 |
jmc |
1.156 |
echo " (-postclean|-pc) after each exp. test, clean build-dir & run-dir" |
58 |
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echo " (-deloutp|-do) delete output files after successful run" |
59 |
ce107 |
1.90 |
echo " (-deldir|-dd) on success, delete the output directory" |
60 |
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echo " (-ts) provide timing information per timestep" |
61 |
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echo " (-papis) provide MFlop/s per timestep using PAPI" |
62 |
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echo " (-pcls) provide MFlop/s per timestep using PCL" |
63 |
edhill |
1.6 |
echo |
64 |
edhill |
1.50 |
echo "and where STRING can be a whitespace-delimited list" |
65 |
edhill |
1.6 |
echo "such as:" |
66 |
edhill |
1.50 |
echo |
67 |
edhill |
1.6 |
echo " -t 'exp0 exp2 exp3' " |
68 |
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echo " -addr='abc@123.com testing@home.org'" |
69 |
edhill |
1.1 |
echo |
70 |
edhill |
1.50 |
echo "provided that the expression is properly quoted within the current" |
71 |
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echo "shell (note the use of single quotes to protect white space)." |
72 |
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echo |
73 |
edhill |
1.1 |
exit 1 |
74 |
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} |
75 |
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76 |
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# build the mpack utility |
77 |
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build_mpack() |
78 |
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{ |
79 |
edhill |
1.34 |
printf "building the mpack utility... " |
80 |
jmc |
1.113 |
MPACK="$MPACKDIR/mpack" |
81 |
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if test ! -x $MPACK ; then |
82 |
edhill |
1.1 |
if test ! -d $MPACKDIR ; then |
83 |
edhill |
1.20 |
echo |
84 |
edhill |
1.1 |
echo "Error: can't find \"$MPACKDIR\"" |
85 |
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echo " are you sure this program is being run in the correct " |
86 |
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echo " (that is, \"MITGCM_ROOT\verification\") directory?" |
87 |
edhill |
1.20 |
echo |
88 |
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HAVE_MPACK=f |
89 |
edhill |
1.1 |
fi |
90 |
edhill |
1.26 |
if test "x$CC" = x ; then |
91 |
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export CC=cc |
92 |
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fi |
93 |
jmc |
1.112 |
printf "building mpack (using CC=$CC)... " |
94 |
edhill |
1.25 |
( cd $MPACKDIR && ./configure && $MAKE ) > tr_build_mpack.out 2>&1 |
95 |
edhill |
1.1 |
RETVAL=$? |
96 |
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if test "x$RETVAL" != x0 ; then |
97 |
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echo |
98 |
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echo "Error building the mpack tools at: $MPACK_DIR" |
99 |
edhill |
1.20 |
echo |
100 |
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HAVE_MPACK=f |
101 |
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else |
102 |
edhill |
1.25 |
rm -f tr_build_mpack.out |
103 |
edhill |
1.20 |
HAVE_MPACK=t |
104 |
jmc |
1.113 |
echo "done" |
105 |
edhill |
1.1 |
fi |
106 |
edhill |
1.20 |
else |
107 |
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HAVE_MPACK=t |
108 |
jmc |
1.113 |
echo "already exist" |
109 |
edhill |
1.1 |
fi |
110 |
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} |
111 |
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112 |
jmc |
1.93 |
testoutput_var() |
113 |
edhill |
1.1 |
{ |
114 |
jmc |
1.99 |
# testoutput_var dir s1 label subdir reference_output |
115 |
edhill |
1.1 |
# |
116 |
jmc |
1.135 |
# compares 1 variable output selected from file $dir/$subdir/$OUTPUTFILE |
117 |
jmc |
1.99 |
# with same output from reference file $dir/results/$reference_output |
118 |
jmc |
1.93 |
# using search strings s1 and text label |
119 |
edhill |
1.1 |
|
120 |
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if [ $debug -gt 0 ]; then |
121 |
jmc |
1.93 |
echo testoutput_var: grep "$2" $1/$4/$OUTPUTFILE 1>&2 |
122 |
edhill |
1.1 |
fi |
123 |
jmc |
1.87 |
if [ -r $1/$4/$OUTPUTFILE ]; then |
124 |
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grep "$2" $1/$4/$OUTPUTFILE | sed 's/.*=//' | cat -n > tmp1.txt |
125 |
jmc |
1.67 |
lncntA=`wc -l tmp1.txt | awk '{print $1}' ` |
126 |
jmc |
1.100 |
if [ $lncntA -lt 2 ]; then |
127 |
edhill |
1.1 |
if [ $verbose -gt 0 ]; then |
128 |
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echo Not enough lines of output when searching for "$2" 1>&2 |
129 |
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fi |
130 |
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return 99 |
131 |
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fi |
132 |
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else |
133 |
jmc |
1.93 |
echo testoutput_var: $OUTPUTFILE from model run was not readable 1>&2 |
134 |
edhill |
1.1 |
return 99 |
135 |
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fi |
136 |
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if [ $debug -gt 0 ]; then |
137 |
jmc |
1.99 |
echo testoutput_var: grep "$2" $1/results/$5 1>&2 |
138 |
edhill |
1.1 |
fi |
139 |
jmc |
1.99 |
grep "$2" $1/results/$5 | sed 's/.*=//' | cat -n > tmp2.txt |
140 |
jmc |
1.67 |
lncntB=`wc -l tmp2.txt | awk '{print $1}' ` |
141 |
jmc |
1.100 |
if [ $lncntB -lt 2 ]; then |
142 |
edhill |
1.1 |
if [ $verbose -gt 0 ]; then |
143 |
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echo Not enough lines of output when searching for "$2" 1>&2 |
144 |
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fi |
145 |
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return 99 |
146 |
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fi |
147 |
jmc |
1.67 |
if [ $lncntA -ne $lncntB ]; then |
148 |
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if [ $verbose -gt 0 ]; then |
149 |
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echo Not same Nb of lines when searching for "$2" ":" $lncntA $lncntB 1>&2 |
150 |
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fi |
151 |
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return 99 |
152 |
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fi |
153 |
edhill |
1.72 |
has_nan=`cat tmp1.txt | grep -i nan | wc -l` |
154 |
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if [ $has_nan -gt 0 ] ; then |
155 |
jmc |
1.93 |
echo testoutput_var: $OUTPUTFILE contains $has_nan NaN values 1>&2 |
156 |
edhill |
1.72 |
return 99 |
157 |
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fi |
158 |
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has_inf=`cat tmp1.txt | grep -i inf | wc -l` |
159 |
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if [ $has_inf -gt 0 ] ; then |
160 |
jmc |
1.93 |
echo testoutput_var: $OUTPUTFILE contains $has_inf Inf values 1>&2 |
161 |
jmc |
1.71 |
return 99 |
162 |
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fi |
163 |
edhill |
1.1 |
if [ $debug -gt 0 ]; then |
164 |
jmc |
1.93 |
echo testoutput_var: join tmp1.txt tmp2.txt 1>&2 |
165 |
edhill |
1.1 |
fi |
166 |
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join tmp1.txt tmp2.txt | awk '{print $1 " " $2 " " $3}' > tmp3.txt |
167 |
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if [ $debug -gt 0 ]; then |
168 |
jmc |
1.93 |
echo testoutput_var: compare_lines 1>&2 |
169 |
edhill |
1.1 |
fi |
170 |
edhill |
1.22 |
if [ $verbose -gt 1 ]; then |
171 |
|
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cat tmp3.txt 1>&2 |
172 |
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fi |
173 |
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echo "-1" >> tmp3.txt |
174 |
edhill |
1.23 |
# On the SGI O3K (*not* the O2K), "cat -n" inserts a ":" after the line number |
175 |
|
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cat tmp3.txt | sed -e 's|:||g' > tmp4.txt |
176 |
jmc |
1.91 |
digits_of_similarity=`./tr_cmpnum < tmp4.txt` |
177 |
edhill |
1.1 |
if [ $digits_of_similarity -eq 99 ]; then |
178 |
|
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if [ $verbose -gt 0 ]; then |
179 |
jmc |
1.99 |
echo testoutput_var: No comparison was available for \"$3\" 1>&2 |
180 |
edhill |
1.1 |
fi |
181 |
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digits_of_similarity=99 |
182 |
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else |
183 |
|
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if [ $verbose -gt 0 ]; then |
184 |
jmc |
1.99 |
echo There were $digits_of_similarity decimal places of similarity for \"$3\" 1>&2 |
185 |
edhill |
1.1 |
fi |
186 |
|
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fi |
187 |
edhill |
1.23 |
rm -f tmp1.txt tmp2.txt tmp3.txt tmp4.txt |
188 |
jmc |
1.135 |
|
189 |
edhill |
1.1 |
return $digits_of_similarity |
190 |
|
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} |
191 |
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|
192 |
jmc |
1.93 |
testoutput_run() |
193 |
edhill |
1.1 |
{ |
194 |
jmc |
1.99 |
# testoutput_run directory subdir reference_output |
195 |
edhill |
1.1 |
# |
196 |
jmc |
1.93 |
# test output from 1 run in "directory" |
197 |
jmc |
1.103 |
# --> same processing for adjoint & forward test |
198 |
jmc |
1.94 |
# default list of output variables to be checked: |
199 |
|
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# 1rst : main variable used to decide if it pass or FAIL |
200 |
|
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# others : number of matching digits to be printed in summary.txt |
201 |
|
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listChk=$DEF_CHECK_LIST |
202 |
|
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# load experiment-specific list from file "tr_checklist" (if it exist) |
203 |
|
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if test -r $1/$2/tr_checklist ; then listChk=`cat $1/$2/tr_checklist` ; fi |
204 |
|
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sVar=`echo $listChk | awk '{print $1}'` |
205 |
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# remove 1rst var and expand the list: + => min max mean s.d |
206 |
jmc |
1.97 |
listVar=`echo $listChk | sed 's/ [a-zA-Z0-9]*+/&mn &mx &av &sd/g' \ |
207 |
|
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| sed 's/+//g' | sed "s/^$sVar//"` |
208 |
jmc |
1.94 |
if [ $debug -gt 0 ]; then echo "testoutput_run: listVar(I)='$listVar'" 1>&2 ; fi |
209 |
jmc |
1.117 |
# check for ptracer output in reference_output file : |
210 |
|
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outpref=$1/results/$3 |
211 |
|
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ptr_mon="trcstat_ptracerXX_min trcstat_ptracerXX_max" |
212 |
|
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ptr_mon="$ptr_mon trcstat_ptracerXX_mean trcstat_ptracerXX_sd" |
213 |
|
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for ii in $PTRACERS_NUM ; do |
214 |
|
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ptrfound=0 |
215 |
|
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for jj in $ptr_mon ; do |
216 |
|
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name=`eval "echo $jj | sed -e 's|XX|0"$ii"|g'"` |
217 |
|
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tst=`grep $name $outpref | wc -l | awk '{print $1}'` |
218 |
|
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if test ! "x$tst" = x0 ; then ptrfound=1 ; fi |
219 |
|
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done |
220 |
|
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if test $ptrfound = '1' ; then |
221 |
|
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eval "HAVE_PTR0"$ii"=t" |
222 |
|
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else |
223 |
|
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eval "HAVE_PTR0"$ii"=f" |
224 |
utke |
1.120 |
if test "x$ADM" = x -a "x$OADM" = x; then |
225 |
jmc |
1.117 |
# remove this ptr from the list of output variable to check |
226 |
|
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# echo "-- ptr test=" $tst "number of var=" `echo $listVar | awk '{print NF}'` 1>&2 |
227 |
|
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listVar=`echo "$listVar" | sed "s/ pt$ii..//g"` |
228 |
|
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fi |
229 |
|
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fi |
230 |
|
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# eval 'echo "HAVE_PTR0'$ii' = $HAVE_PTR0'$ii'"' 1>&2 |
231 |
|
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done |
232 |
mlosch |
1.116 |
tst=`echo $sVar $listVar | awk '{ for(i=2;i<=NF;i++){if($i==$1)t+=1}; print t }'` |
233 |
jmc |
1.94 |
if test $tst != 1 ; then |
234 |
|
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if test $tst = 0 ; then echo "==> WARNING: selected var >$sVar< not found" 1>&2 |
235 |
|
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else echo "==> WARNING: found selected var >$sVar< $tst times" 1>&2 ; fi |
236 |
|
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echo "==> WARNING: in checked list:" $listVar 1>&2 |
237 |
|
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#- put it back once: |
238 |
|
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listVar=" $sVar "`echo "$listVar " | sed "s/ $sVar / /g"` |
239 |
|
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fi |
240 |
|
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if [ $debug -gt 0 ]; then echo "testoutput_run: listVar(M)='$listVar'" 1>&2 ; fi |
241 |
jmc |
1.154 |
echo "listVar='$listVar'" >> $locDIR"/summary.txt" |
242 |
|
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#--- |
243 |
jmc |
1.94 |
allargs="" |
244 |
|
|
for xx in $listVar |
245 |
|
|
do |
246 |
|
|
case $xx in |
247 |
|
|
'PS') if [ $debug -gt 0 ] |
248 |
|
|
then echo testoutput_run: testoutput_var $1 cg2d_init_res 1>&2 ; fi |
249 |
jmc |
1.99 |
testoutput_var $1 "cg2d_init_res" "Press. Solver (cg2d)" $2 $3; yy=$? |
250 |
jmc |
1.94 |
if [ $debug -gt 0 ] ; then echo testoutput_run: cg2dres=$yy 1>&2 ; fi ;; |
251 |
jmc |
1.101 |
'Cost') testoutput_var $1 "ADM precision_derivative_cost" "ADM Cost" $2 $3; yy=$? ;; |
252 |
|
|
'Grad') testoutput_var $1 "ADM precision_derivative_grad" "ADM Grad" $2 $3; yy=$? ;; |
253 |
jmc |
1.99 |
'Tmn') testoutput_var $1 "dynstat_theta_min" "Theta minimum" $2 $3; yy=$? ;; |
254 |
|
|
'Tmx') testoutput_var $1 "dynstat_theta_max" "Theta maximum" $2 $3; yy=$? ;; |
255 |
|
|
'Tav') testoutput_var $1 "dynstat_theta_mean" "Theta mean" $2 $3; yy=$? ;; |
256 |
|
|
'Tsd') testoutput_var $1 "dynstat_theta_sd" "Theta Std.Dev" $2 $3; yy=$? ;; |
257 |
|
|
'Smn') testoutput_var $1 "dynstat_salt_min" "Salt minimum" $2 $3; yy=$? ;; |
258 |
|
|
'Smx') testoutput_var $1 "dynstat_salt_max" "Salt maximum" $2 $3; yy=$? ;; |
259 |
|
|
'Sav') testoutput_var $1 "dynstat_salt_mean" "Salt mean" $2 $3; yy=$? ;; |
260 |
|
|
'Ssd') testoutput_var $1 "dynstat_salt_sd" "Salt Std.Dev" $2 $3; yy=$? ;; |
261 |
jmc |
1.94 |
'Umn') testoutput_var $1 "dynstat_uvel_min" "U minimum" $2 $3; yy=$? ;; |
262 |
|
|
'Umx') testoutput_var $1 "dynstat_uvel_max" "U maximum" $2 $3; yy=$? ;; |
263 |
|
|
'Uav') testoutput_var $1 "dynstat_uvel_mean" "U mean" $2 $3; yy=$? ;; |
264 |
jmc |
1.99 |
'Usd') testoutput_var $1 "dynstat_uvel_sd" "U Std.Dev" $2 $3; yy=$? ;; |
265 |
jmc |
1.94 |
'Vmn') testoutput_var $1 "dynstat_vvel_min" "V minimum" $2 $3; yy=$? ;; |
266 |
|
|
'Vmx') testoutput_var $1 "dynstat_vvel_max" "V maximum" $2 $3; yy=$? ;; |
267 |
|
|
'Vav') testoutput_var $1 "dynstat_vvel_mean" "V mean" $2 $3; yy=$? ;; |
268 |
jmc |
1.99 |
'Vsd') testoutput_var $1 "dynstat_vvel_sd" "V Std.Dev" $2 $3; yy=$? ;; |
269 |
jmc |
1.94 |
'pt1mn'|'pt2mn'|'pt3mn'|'pt4mn'|'pt5mn') ii=`echo $xx | sed 's/pt//' | sed 's/..$//'` |
270 |
|
|
testoutput_var $1 "trcstat_ptracer0"$ii"_min" "p0"$ii"_min" $2 $3; yy=$? ;; |
271 |
|
|
'pt1mx'|'pt2mx'|'pt3mx'|'pt4mx'|'pt5mx') ii=`echo $xx | sed 's/pt//' | sed 's/..$//'` |
272 |
|
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testoutput_var $1 "trcstat_ptracer0"$ii"_max" "p0"$ii"_max" $2 $3; yy=$? ;; |
273 |
|
|
'pt1av'|'pt2av'|'pt3av'|'pt4av'|'pt5av') ii=`echo $xx | sed 's/pt//' | sed 's/..$//'` |
274 |
|
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testoutput_var $1 "trcstat_ptracer0"$ii"_mean" "p0"$ii"_mean" $2 $3; yy=$? ;; |
275 |
|
|
'pt1sd'|'pt2sd'|'pt3sd'|'pt4sd'|'pt5sd') ii=`echo $xx | sed 's/pt//' | sed 's/..$//'` |
276 |
jmc |
1.99 |
testoutput_var $1 "trcstat_ptracer0"$ii"_sd" "p0"$ii"_StDv" $2 $3; yy=$? ;; |
277 |
jmc |
1.130 |
'Qntmn') testoutput_var $1 "forcing_qnet_min" "Qnet minimum" $2 $3; yy=$? ;; |
278 |
|
|
'Qntmx') testoutput_var $1 "forcing_qnet_max" "Qnet maximum" $2 $3; yy=$? ;; |
279 |
|
|
'Qntav') testoutput_var $1 "forcing_qnet_mean" "Qnet mean" $2 $3; yy=$? ;; |
280 |
|
|
'Qntsd') testoutput_var $1 "forcing_qnet_sd" "Qnet Std.Dev" $2 $3; yy=$? ;; |
281 |
jmc |
1.101 |
'aSImn') testoutput_var $1 "seaice_area_min" "SIce Area min" $2 $3; yy=$? ;; |
282 |
|
|
'aSImx') testoutput_var $1 "seaice_area_max" "SIce Area max" $2 $3; yy=$? ;; |
283 |
|
|
'aSIav') testoutput_var $1 "seaice_area_mean" "SIce Area mean" $2 $3; yy=$? ;; |
284 |
|
|
'aSIsd') testoutput_var $1 "seaice_area_sd" "SIce Area StDv" $2 $3; yy=$? ;; |
285 |
|
|
'hSImn') testoutput_var $1 "seaice_heff_min" "SIce Heff min" $2 $3; yy=$? ;; |
286 |
jmc |
1.126 |
'hSImx') testoutput_var $1 "seaice_heff_max" "SIce Heff max" $2 $3; yy=$? ;; |
287 |
|
|
'hSIav') testoutput_var $1 "seaice_heff_mean" "SIce Heff mean" $2 $3; yy=$? ;; |
288 |
|
|
'hSIsd') testoutput_var $1 "seaice_heff_sd" "SIce Heff StDv" $2 $3; yy=$? ;; |
289 |
jmc |
1.101 |
'AthSiG') testoutput_var $1 "thSI_Ice_Area_G" "thSIc Area Global" $2 $3; yy=$? ;; |
290 |
|
|
'AthSiS') testoutput_var $1 "thSI_Ice_Area_S" "thSIc Area South" $2 $3; yy=$? ;; |
291 |
|
|
'AthSiN') testoutput_var $1 "thSI_Ice_Area_N" "thSIc Area North" $2 $3; yy=$? ;; |
292 |
|
|
'HthSiG') testoutput_var $1 "thSI_IceH_ave_G" "thSIc H Global" $2 $3; yy=$? ;; |
293 |
|
|
'HthSiS') testoutput_var $1 "thSI_IceH_ave_S" "thSIc H South" $2 $3; yy=$? ;; |
294 |
|
|
'HthSiN') testoutput_var $1 "thSI_IceH_ave_N" "thSIc H North" $2 $3; yy=$? ;; |
295 |
jmc |
1.94 |
*) yy=99; echo "WARNING: asking for var=$xx : not recognized !" 1>&2 ;; |
296 |
|
|
esac |
297 |
|
|
if test $xx = $sVar |
298 |
|
|
then allargs="$allargs > $yy <" |
299 |
|
|
else allargs="$allargs $yy" |
300 |
|
|
fi |
301 |
|
|
done |
302 |
|
|
|
303 |
|
|
nbVar=`echo $listVar | awk '{print NF}'` |
304 |
jmc |
1.135 |
if [ $nbVar -lt $LEN_CHECK_LIST ] ; then |
305 |
jmc |
1.94 |
#-- fill line (up to standard length) with dot: |
306 |
jmc |
1.97 |
adNul=`expr $LEN_CHECK_LIST - $nbVar | awk '{for(i=1;i<=$1;i++){print "."}}'` |
307 |
jmc |
1.94 |
echo $allargs $adNul |
308 |
|
|
else |
309 |
|
|
echo $allargs |
310 |
jmc |
1.135 |
fi |
311 |
jmc |
1.103 |
# <-- same processing for adjoint & forward test |
312 |
edhill |
1.1 |
} |
313 |
|
|
|
314 |
|
|
genmakemodel() |
315 |
|
|
{ |
316 |
|
|
# genmakemodel directory |
317 |
edhill |
1.10 |
if test "x$NOGENMAKE" = xt ; then |
318 |
|
|
echo "genmake skipped!" |
319 |
|
|
else |
320 |
edhill |
1.34 |
if test "x$BASH" = x ; then |
321 |
|
|
GENMAKE2="../../../tools/genmake2" |
322 |
|
|
else |
323 |
|
|
GENMAKE2="$BASH ../../../tools/genmake2 -bash $BASH" |
324 |
|
|
fi |
325 |
edhill |
1.10 |
( |
326 |
|
|
cd $1; |
327 |
edhill |
1.24 |
command="$GENMAKE2 -ds -m $MAKE" |
328 |
jmc |
1.141 |
if test "x$MKDEPEND" != x ; then |
329 |
|
|
command="$command -makedepend=$MKDEPEND" |
330 |
|
|
fi |
331 |
utke |
1.120 |
if test "x$ADM" = xt ; then |
332 |
|
|
command="$command --mods=../code_ad" |
333 |
|
|
elif test "x$OADM" = xt ; then |
334 |
|
|
command="$command -adof ../../../tools/adjoint_options/adjoint_oad -mods '../code_oad ../../OpenAD/code_oad_all'" |
335 |
|
|
else |
336 |
jmc |
1.124 |
command="$command -mods=../code" |
337 |
edhill |
1.24 |
fi |
338 |
edhill |
1.10 |
if test "x$OPTFILE" != xNONE ; then |
339 |
jmc |
1.124 |
command="$command -optfile=$OPTFILE" |
340 |
edhill |
1.10 |
fi |
341 |
|
|
if test "x$IEEE" != x ; then |
342 |
|
|
command="$command -ieee" |
343 |
|
|
fi |
344 |
jmc |
1.109 |
if test "x$GSL" = xt ; then |
345 |
|
|
command="$command -gsl" |
346 |
|
|
fi |
347 |
jmc |
1.154 |
if test "x$MPI" != x0 ; then |
348 |
edhill |
1.66 |
command="$command -mpi" |
349 |
|
|
fi |
350 |
jmc |
1.122 |
if test "x$MULTI_THREAD" = xt ; then |
351 |
|
|
#- run multi-threaded using OpenMP: |
352 |
|
|
command="$command -omp" |
353 |
|
|
fi |
354 |
jmc |
1.135 |
if test "x$USE_R4" = xt ; then |
355 |
|
|
command="$command -use_r4" |
356 |
|
|
fi |
357 |
ce107 |
1.90 |
if test "x$TS" = xt ; then |
358 |
|
|
command="$command -ts" |
359 |
|
|
fi |
360 |
|
|
if test "x$PAPIS" = xt ; then |
361 |
|
|
command="$command -papis" |
362 |
jmc |
1.135 |
else |
363 |
ce107 |
1.90 |
if test "x$PCLS" = xt ; then |
364 |
|
|
command="$command -pcls" |
365 |
|
|
fi |
366 |
|
|
fi |
367 |
jmc |
1.139 |
printf 'genmake ... ' |
368 |
jmc |
1.146 |
eval $command > genmake.tr_log 2>&1 |
369 |
edhill |
1.10 |
RETVAL=$? |
370 |
edhill |
1.44 |
# Reduce the size of the testing emails! |
371 |
edhill |
1.47 |
head -100 Makefile > $CDIR/Makefile_head |
372 |
edhill |
1.10 |
if test "x$RETVAL" != x0 ; then |
373 |
jmc |
1.146 |
tail genmake.tr_log |
374 |
jmc |
1.139 |
echo "genmakemodel: genmake failed" |
375 |
jmc |
1.148 |
cp genmake.log genmake_* genmake.tr_log $CDIR |
376 |
edhill |
1.10 |
return 1 |
377 |
|
|
else |
378 |
jmc |
1.139 |
echo "successful" |
379 |
edhill |
1.1 |
fi |
380 |
edhill |
1.10 |
) |
381 |
|
|
fi |
382 |
edhill |
1.1 |
} |
383 |
|
|
|
384 |
|
|
makeclean() |
385 |
|
|
{ |
386 |
|
|
# makeclean directory |
387 |
jmc |
1.146 |
if test "x$NODEPEND" = xf ; then rm -f $1/make.tr_log ; fi |
388 |
edhill |
1.10 |
if test "x$NOCLEAN" = xt ; then |
389 |
jmc |
1.83 |
echo "make Clean skipped!" |
390 |
edhill |
1.10 |
else |
391 |
|
|
( |
392 |
|
|
cd $1; |
393 |
jmc |
1.87 |
#if test -e $OUTPUTFILE ; then rm -f $OUTPUTFILE ; fi |
394 |
edhill |
1.10 |
if test -r Makefile ; then |
395 |
jmc |
1.139 |
printf 'clean build-dir: make Clean ... ' |
396 |
jmc |
1.146 |
$MAKE Clean >> make.tr_log 2>&1 |
397 |
edhill |
1.10 |
RETVAL=$? |
398 |
|
|
if test "x$RETVAL" != x0 ; then |
399 |
jmc |
1.146 |
tail make.tr_log |
400 |
jmc |
1.139 |
echo "makeclean: \"make Clean\" failed" |
401 |
jmc |
1.148 |
cp make.tr_log genmake.log genmake.tr_log $CDIR |
402 |
edhill |
1.10 |
return 1 |
403 |
|
|
fi |
404 |
jmc |
1.139 |
echo successful |
405 |
jmc |
1.127 |
else |
406 |
|
|
echo '' |
407 |
edhill |
1.10 |
fi |
408 |
|
|
exit 0 |
409 |
|
|
) |
410 |
|
|
fi |
411 |
|
|
} |
412 |
|
|
|
413 |
jmc |
1.83 |
run_clean() |
414 |
edhill |
1.68 |
{ |
415 |
jmc |
1.83 |
# run_clean directory |
416 |
|
|
if test "x$NOCLEAN" = xt ; then |
417 |
|
|
echo "run_clean skipped!" |
418 |
|
|
else |
419 |
edhill |
1.68 |
( |
420 |
|
|
cd $1; |
421 |
jmc |
1.139 |
printf 'clean run-dir ... ' |
422 |
jmc |
1.83 |
# part of what is done after "make clean" when doing "make CLEAN" |
423 |
|
|
find . -name "*.meta" -exec rm {} \; |
424 |
|
|
find . -name "*.data" -exec rm {} \; |
425 |
|
|
find . -name "fort.*" -exec rm {} \; |
426 |
|
|
find . -type l -exec rm {} \; |
427 |
jmc |
1.161 |
#- should remove executable only if sym-link (alredy done above) |
428 |
jmc |
1.160 |
rm -f $RUNLOG *.txt STD* *diagnostics.log datetime |
429 |
jmc |
1.83 |
rm -rf mnc_test_* |
430 |
jmc |
1.107 |
rm -f *_MIT_CE_000.opt0000 costfunction*0000 |
431 |
jmc |
1.139 |
echo successful |
432 |
edhill |
1.68 |
exit 0 |
433 |
|
|
) |
434 |
|
|
fi |
435 |
|
|
} |
436 |
|
|
|
437 |
edhill |
1.10 |
makedependmodel() |
438 |
|
|
{ |
439 |
|
|
# makedependmodel directory |
440 |
|
|
if test "x$NODEPEND" = xt ; then |
441 |
|
|
echo "make depend skipped!" |
442 |
|
|
else |
443 |
|
|
( |
444 |
|
|
cd $1; |
445 |
jmc |
1.139 |
printf 'make depend ... ' |
446 |
jmc |
1.146 |
$MAKE depend >> make.tr_log 2>&1 |
447 |
edhill |
1.1 |
RETVAL=$? |
448 |
|
|
if test "x$RETVAL" != x0 ; then |
449 |
jmc |
1.146 |
tail make.tr_log |
450 |
jmc |
1.139 |
echo "makedependmodel: make depend failed" |
451 |
jmc |
1.148 |
cp make.tr_log genmake.log genmake.tr_log $CDIR |
452 |
edhill |
1.1 |
return 1 |
453 |
edhill |
1.10 |
else |
454 |
jmc |
1.139 |
echo successful |
455 |
edhill |
1.1 |
fi |
456 |
edhill |
1.10 |
) |
457 |
|
|
fi |
458 |
edhill |
1.1 |
} |
459 |
|
|
|
460 |
|
|
makemodel() |
461 |
|
|
{ |
462 |
|
|
# makemodel directory |
463 |
|
|
( |
464 |
jmc |
1.159 |
mk_fail=0 |
465 |
jmc |
1.136 |
if test "x$NOMAKE" = xt ; then |
466 |
|
|
cd $1; |
467 |
|
|
if test -x $EXECUTABLE ; then |
468 |
|
|
echo "make skipped!" |
469 |
|
|
else |
470 |
|
|
echo "no executable!" |
471 |
jmc |
1.159 |
mk_fail=3 |
472 |
jmc |
1.136 |
fi |
473 |
|
|
else |
474 |
edhill |
1.1 |
cd $1; |
475 |
|
|
if test -r Makefile ; then |
476 |
jmc |
1.139 |
printf 'make ... ' |
477 |
utke |
1.120 |
if test "x$ADM" = xt ; then |
478 |
jmc |
1.146 |
$MAKE adall >> make.tr_log 2>&1 |
479 |
utke |
1.120 |
elif test "x$OADM" = xt ; then |
480 |
jmc |
1.146 |
$MAKE adAll >> make.tr_log 2>&1 |
481 |
utke |
1.120 |
else |
482 |
edhill |
1.43 |
if test "x$JOBS" = x ; then |
483 |
jmc |
1.146 |
$MAKE >> make.tr_log 2>&1 |
484 |
edhill |
1.43 |
else |
485 |
jmc |
1.146 |
$MAKE -j $JOBS >> make.tr_log 2>&1 |
486 |
edhill |
1.43 |
fi |
487 |
edhill |
1.24 |
fi |
488 |
edhill |
1.1 |
RETVAL=$? |
489 |
|
|
if test "x$RETVAL" != x0 ; then |
490 |
jmc |
1.146 |
tail make.tr_log |
491 |
jmc |
1.139 |
echo failed |
492 |
jmc |
1.148 |
cp make.tr_log genmake.log genmake.tr_log $CDIR |
493 |
jmc |
1.131 |
rm -f $EXECUTABLE |
494 |
jmc |
1.159 |
mk_fail=1 |
495 |
edhill |
1.1 |
else |
496 |
jmc |
1.139 |
echo successful |
497 |
edhill |
1.1 |
fi |
498 |
jmc |
1.159 |
else |
499 |
|
|
echo "no Makefile !" |
500 |
|
|
mk_fail=2 |
501 |
edhill |
1.1 |
fi |
502 |
jmc |
1.136 |
fi |
503 |
jmc |
1.158 |
if test "x$ADM" = xt -a -f taf_ad.log ; then |
504 |
|
|
head -1 taf_ad.log >> $CDIR"/summary.txt" |
505 |
|
|
nerr=`grep -c 'TAF *.* ERROR ' taf_ad.log` |
506 |
|
|
nwar=`grep -c 'TAF RECOMPUTATION *.* WARNING ' taf_ad.log` |
507 |
|
|
echo " TAF reports $nerr Errors and $nwar Recomputation Warnings" \ |
508 |
|
|
>> $CDIR"/summary.txt" |
509 |
|
|
fi |
510 |
jmc |
1.159 |
if test $mk_fail != 0 ; then return $mk_fail ; fi |
511 |
edhill |
1.1 |
) |
512 |
|
|
} |
513 |
|
|
|
514 |
jmc |
1.154 |
mk_mpi_size() |
515 |
|
|
{ |
516 |
jmc |
1.161 |
# mk_mpi_size input_file output_file proc_Nb prefer_to_split_X |
517 |
jmc |
1.154 |
# |
518 |
|
|
# make new SIZE.h (=output_file) from SIZE.h_mpi (=input_file) |
519 |
|
|
# for an MPI build with no more than proc_Nb processors ; |
520 |
|
|
# return the effective number of processors. |
521 |
|
|
|
522 |
|
|
inp=$1 |
523 |
|
|
out=$2 |
524 |
|
|
np=$3 |
525 |
jmc |
1.161 |
dirX=$4 |
526 |
jmc |
1.154 |
tmp=TTT.$$ |
527 |
|
|
|
528 |
|
|
px=`grep "^ & *nPx *=" $inp | sed "s/^ & *nPx *= *//" | sed 's/, *$//'` |
529 |
|
|
py=`grep "^ & *nPy *=" $inp | sed "s/^ & *nPy *= *//" | sed 's/, *$//'` |
530 |
|
|
sx=`grep "^ & *nSx *=" $inp | sed "s/^ & *nSx *= *//" | sed 's/, *$//'` |
531 |
|
|
sy=`grep "^ & *nSy *=" $inp | sed "s/^ & *nSy *= *//" | sed 's/, *$//'` |
532 |
|
|
|
533 |
|
|
#- find the largest divisor of input_file proc Nb, but not larger than $np |
534 |
|
|
pp=0 |
535 |
jmc |
1.155 |
i=1 |
536 |
|
|
while [ $i -le $px ] ; do |
537 |
jmc |
1.154 |
if [ `expr $px % $i` -eq 0 ] ; then |
538 |
jmc |
1.155 |
j=1 |
539 |
|
|
while [ $j -le $py ] ; do |
540 |
|
|
if [ `expr $py % $j` -eq 0 ] ; then |
541 |
|
|
ij=`expr $i \* $j` |
542 |
|
|
if [ $ij -gt $pp ] ; then |
543 |
jmc |
1.161 |
flag=1 |
544 |
|
|
elif [ $ij -eq $pp ] ; then |
545 |
|
|
flag=$dirX |
546 |
|
|
else |
547 |
|
|
flag=0 |
548 |
|
|
fi |
549 |
|
|
if test $flag = 1 ; then |
550 |
jmc |
1.155 |
if [ $ij -le $np ] ; then |
551 |
|
|
ix=$i ; jy=$j ; pp=$ij |
552 |
|
|
#echo " ix,jy= $ix,$jy" |
553 |
|
|
fi |
554 |
|
|
fi |
555 |
|
|
fi |
556 |
|
|
j=`expr $j + 1` |
557 |
|
|
done |
558 |
jmc |
1.154 |
fi |
559 |
jmc |
1.155 |
i=`expr $i + 1` |
560 |
jmc |
1.154 |
done |
561 |
|
|
|
562 |
|
|
#- create new SIZE.h type file: |
563 |
|
|
sx=`expr $sx \* $px / $ix` |
564 |
|
|
sy=`expr $sy \* $py / $jy` |
565 |
|
|
if [ $verbose -gt 1 ]; then |
566 |
|
|
echo " px,py,np= $px,$py,$np : New MPI size: px,py= $ix,$jy : sx,sy= $sx,$sy" |
567 |
|
|
fi |
568 |
|
|
sed "/^ \& *nPx *=/s/[0-9]*,/$ix,/" $inp > $tmp |
569 |
|
|
sed "/^ \& *nPy *=/s/[0-9]*,/$jy,/" $tmp > $out |
570 |
|
|
sed "/^ \& *nSx *=/s/[0-9]*,/$sx,/" $out > $tmp |
571 |
|
|
sed "/^ \& *nSy *=/s/[0-9]*,/$sy,/" $tmp > $out |
572 |
|
|
rm -f $tmp |
573 |
|
|
return $pp |
574 |
|
|
} |
575 |
|
|
|
576 |
edhill |
1.27 |
symlink_mpifiles() |
577 |
|
|
{ |
578 |
|
|
# Put special links so that MPI specific files are used |
579 |
|
|
# This MUST be invoked between makeclean and makelinks because |
580 |
|
|
# the Makefile will link to non-mpi files by default |
581 |
|
|
|
582 |
|
|
dir=$1 |
583 |
|
|
code_dir=$2 |
584 |
jmc |
1.154 |
build_dir=$dir/$3 |
585 |
jmc |
1.135 |
|
586 |
edhill |
1.27 |
# These are files that should replace their counter-part when using -mpi |
587 |
jmc |
1.154 |
MPI_FILES=`(cd $dir/$code_dir; find . -name "*_mpi" -print)` |
588 |
edhill |
1.27 |
|
589 |
jmc |
1.154 |
for ii in $MPI_FILES ; do |
590 |
|
|
i=`echo $ii | sed 's:^\./::'` |
591 |
|
|
name=`echo $i | sed 's:_mpi::'` |
592 |
|
|
file="../$code_dir/$i" |
593 |
|
|
if test $name = 'SIZE.h' ; then file="SIZE.h.mpi" ; fi |
594 |
|
|
|
595 |
|
|
# Is this an MPI run? |
596 |
|
|
if test "x$MPI" = x0 ; then |
597 |
|
|
# NO: We undo any _mpi symbolically linked files |
598 |
|
|
if test -L $build_dir/$name ; then |
599 |
|
|
( cd $build_dir ; cmp $name $file > /dev/null 2>&1 ) |
600 |
|
|
RETVAL=$? |
601 |
|
|
if test "x$RETVAL" = x0 ; then |
602 |
|
|
if [ $verbose -gt 1 ]; then |
603 |
|
|
echo " Un-linking $name from ../$code_dir" ; fi |
604 |
|
|
rm -f $build_dir/$name |
605 |
|
|
fi |
606 |
|
|
fi |
607 |
|
|
else |
608 |
|
|
# YES: We symbolically link these files to the build |
609 |
|
|
# dir so long as there is no real file in place |
610 |
|
|
( cd $build_dir ; cmp $name $file > /dev/null 2>&1 ) |
611 |
edhill |
1.27 |
RETVAL=$? |
612 |
jmc |
1.154 |
if [ $verbose -gt 1 ]; then echo " cmp $name $file returns: $RETVAL" ; fi |
613 |
edhill |
1.27 |
if test "x$RETVAL" != x0 ; then |
614 |
jmc |
1.154 |
if test -h $build_dir/$name ; then rm -f $build_dir/$name ; fi |
615 |
|
|
if test ! -r $build_dir/$name ; then |
616 |
|
|
if [ $verbose -gt 1 ]; then echo " Linking $name to $file" ; fi |
617 |
|
|
(cd $build_dir; ln -sf $file $name) |
618 |
edhill |
1.27 |
fi |
619 |
|
|
fi |
620 |
jmc |
1.154 |
fi |
621 |
|
|
done |
622 |
edhill |
1.27 |
} |
623 |
|
|
|
624 |
edhill |
1.1 |
linkdata() |
625 |
|
|
{ |
626 |
jmc |
1.83 |
# linkdata run_dir input_dir_1 input_dir_2 ... |
627 |
edhill |
1.1 |
# |
628 |
|
|
# symbolically link data files to run directory |
629 |
jmc |
1.83 |
if test -d $1 ; then |
630 |
edhill |
1.12 |
( |
631 |
jmc |
1.83 |
cd $1 ; shift |
632 |
jmc |
1.139 |
echo 'linkdata from dirs:' $* |
633 |
jmc |
1.125 |
inpMPI=`(cd ../$1 ; find . -name "*.mpi" -print | sed 's:^\./::')` |
634 |
|
|
for xx in $inpMPI ; do |
635 |
|
|
if test -r "../"$1"/"$xx ; then |
636 |
|
|
# found 1 _mpi sfx file in 1rst input dir and it is readable |
637 |
|
|
yy=`echo $xx | sed 's:\.mpi$::'` |
638 |
jmc |
1.154 |
if test "x$MPI" = "x0" ; then |
639 |
|
|
# not mpi test: remove symbolic link |
640 |
|
|
if test -h $yy ; then rm -f $yy ; fi |
641 |
|
|
else |
642 |
|
|
# mpi test: remove symbolic link & link .mpi sfx file |
643 |
jmc |
1.125 |
if test -h $yy ; then rm -f $yy ; fi |
644 |
jmc |
1.135 |
if test ! -r $yy ; then |
645 |
jmc |
1.125 |
ln -sf "../"$1"/"$xx $yy ; |
646 |
jmc |
1.139 |
printf " $xx" 1>&2 |
647 |
jmc |
1.125 |
fi |
648 |
|
|
fi |
649 |
|
|
fi |
650 |
|
|
done |
651 |
jmc |
1.83 |
if test -r "../"$1"/eedata.mth" ; then |
652 |
|
|
# found eedata.mth in 1rst input dir and it is readable |
653 |
|
|
if test "x$MULTI_THREAD" = "xt" ; then |
654 |
|
|
# multi-threaded test: remove symbolic link & link eedata.mth |
655 |
|
|
if test -h eedata ; then rm -f eedata ; fi |
656 |
jmc |
1.135 |
if test ! -r eedata ; then |
657 |
jmc |
1.83 |
ln -sf "../"$1"/eedata.mth" eedata ; |
658 |
jmc |
1.139 |
printf ' eedata.mth' 1>&2 |
659 |
edhill |
1.24 |
fi |
660 |
jmc |
1.83 |
else |
661 |
|
|
# not multi-threaded test: remove eedata symbolic link |
662 |
|
|
if test -h eedata ; then rm -f eedata ; fi |
663 |
|
|
fi |
664 |
|
|
fi |
665 |
jmc |
1.108 |
prevDir='NONE' |
666 |
jmc |
1.83 |
for ldir in $* ; do |
667 |
jmc |
1.108 |
if test -d "../"$ldir -a $ldir != $prevDir ; then |
668 |
jmc |
1.139 |
printf " ldir=${ldir}:" 1>&2 |
669 |
jmc |
1.83 |
files=`( cd "../"$ldir ; ls -1 | grep -v CVS )` |
670 |
|
|
for i in $files ; do |
671 |
|
|
if test ! -d "../"$ldir/$i ; then |
672 |
|
|
if test ! -r $i ; then |
673 |
|
|
printf ' '$i 1>&2 |
674 |
|
|
ln -sf "../"$ldir"/"$i $i |
675 |
|
|
fi |
676 |
|
|
fi |
677 |
|
|
done |
678 |
jmc |
1.139 |
printf ' ;' 1>&2 |
679 |
jmc |
1.83 |
if test -x "../"$ldir"/"prepare_run ; then |
680 |
jmc |
1.139 |
"../"$ldir"/"prepare_run 1>&2 |
681 |
|
|
else |
682 |
|
|
echo '' 1>&2 |
683 |
edhill |
1.24 |
fi |
684 |
jmc |
1.82 |
fi |
685 |
jmc |
1.108 |
prevDir=$ldir |
686 |
jmc |
1.83 |
done |
687 |
edhill |
1.12 |
) |
688 |
edhill |
1.1 |
fi |
689 |
|
|
} |
690 |
|
|
|
691 |
|
|
runmodel() |
692 |
|
|
{ |
693 |
edhill |
1.6 |
# runmodel directory |
694 |
edhill |
1.1 |
# |
695 |
jmc |
1.154 |
# runs $COMMAND in "directory" |
696 |
edhill |
1.6 |
# (where "$COMMAND" is relative to "directory") |
697 |
edhill |
1.1 |
( |
698 |
|
|
cd $1 |
699 |
jmc |
1.139 |
printf 'runmodel in %s ... ' $1 |
700 |
jmc |
1.158 |
if test "x$MPI" != x0 ; then |
701 |
|
|
#- adjust the MPI run command with the right number of Procs |
702 |
|
|
#echo '' ; echo " COMMAND='$COMMAND'" |
703 |
|
|
COMMAND=`echo $COMMAND | sed "s/ TR_NPROC / $LOC_NPROC /"` |
704 |
|
|
if test "x$MPI_MFILE" != x ; then |
705 |
|
|
COMMAND=`echo $COMMAND | sed "s/ TR_MFILE / ..\/..\/$LOC_MFILE /"` |
706 |
|
|
fi |
707 |
|
|
#echo " COMMAND='$COMMAND'" |
708 |
|
|
fi |
709 |
jmc |
1.134 |
if test -L $EXECUTABLE ; then |
710 |
|
|
if test -x "../"$builddir"/"$EXECUTABLE ; then |
711 |
jmc |
1.154 |
cmp $EXECUTABLE "../"$builddir"/"$EXECUTABLE > /dev/null 2>&1 |
712 |
|
|
outD=$? ; if test "x$outD" != x0 ; then rm -f $EXECUTABLE ; fi |
713 |
jmc |
1.134 |
else rm -f $EXECUTABLE |
714 |
|
|
fi |
715 |
jmc |
1.106 |
fi |
716 |
jmc |
1.83 |
if test ! -x $EXECUTABLE -a -x "../"$builddir"/"$EXECUTABLE ; then |
717 |
jmc |
1.119 |
echo " link" $EXECUTABLE "from dir ../"$builddir > run.log_tmp |
718 |
jmc |
1.83 |
ln -sf "../"$builddir"/"$EXECUTABLE . |
719 |
|
|
fi |
720 |
|
|
if test ! -x $EXECUTABLE ; then |
721 |
jmc |
1.156 |
rm -f $RUNLOG ; touch $RUNLOG |
722 |
|
|
if test -f run.log_tmp ; then cat run.log_tmp >> $RUNLOG ; fi |
723 |
|
|
echo " no executable:" $EXECUTABLE >> $RUNLOG |
724 |
|
|
RETVAL=8 |
725 |
|
|
ENDVAL=-1 |
726 |
jmc |
1.75 |
else |
727 |
jmc |
1.156 |
if test ! -f $OUTPUTFILE -o $OUTPUTFILE -ot $EXECUTABLE ; then |
728 |
|
|
# output do not exist or is older than executable: |
729 |
|
|
rm -f $RUNLOG ; touch $RUNLOG |
730 |
|
|
if test -f run.log_tmp ; then cat run.log_tmp >> $RUNLOG ; fi |
731 |
|
|
( eval $COMMAND ) >> $RUNLOG 2>&1 |
732 |
|
|
RETVAL=$? |
733 |
|
|
ENDVAL=`tail $OUTPUTFILE | grep -c 'PROGRAM MAIN: Execution ended Normally'` |
734 |
|
|
if [ $POSTCLEAN -eq 1 -a $ENDVAL -gt 0 ] ; then |
735 |
|
|
find . -name "*.meta" -exec rm {} \; |
736 |
|
|
find . -name "*.data" -exec rm {} \; |
737 |
|
|
rm -rf mnc_test_* |
738 |
jmc |
1.83 |
fi |
739 |
jmc |
1.156 |
else |
740 |
|
|
RETVAL=0 |
741 |
jmc |
1.153 |
ENDVAL=`tail $OUTPUTFILE | grep -c 'PROGRAM MAIN: Execution ended Normally'` |
742 |
jmc |
1.156 |
touch $RUNLOG |
743 |
|
|
if test -f run.log_tmp ; then cat run.log_tmp >> $RUNLOG ; fi |
744 |
|
|
echo "---------->> $OUTPUTFILE is up to date " >> $RUNLOG 2>&1 |
745 |
|
|
fi |
746 |
jmc |
1.75 |
fi |
747 |
jmc |
1.119 |
rm -f run.log_tmp |
748 |
jmc |
1.158 |
#- in all cases where OutputFile exists, report SIZE (and AD time) |
749 |
|
|
if test -f $OUTPUTFILE ; then |
750 |
|
|
grep '(PID\.TID 0000\.0001) n.. =' $OUTPUTFILE \ |
751 |
|
|
| sed 's/(PID.TID 0000.0001) //' >> $CDIR"/summary.txt" |
752 |
|
|
if test "x$ADM" = xt ; then |
753 |
|
|
grep -A3 'Seconds in section "ALL' $OUTPUTFILE >> $CDIR"/summary.txt" |
754 |
|
|
fi |
755 |
|
|
fi |
756 |
|
|
if test -s STDERR.0000 ; then cp STDERR.0000 $CDIR"/STDERR.0000" ; fi |
757 |
jmc |
1.88 |
if [ $RETVAL -eq 0 -a $ENDVAL -gt 0 ] ; then |
758 |
jmc |
1.139 |
echo successful |
759 |
|
|
printf '=> output from running in %s :\n' $1 1>&2 |
760 |
|
|
tail $RUNLOG | sed 's/^.*/> &/g' 1>&2 |
761 |
edhill |
1.6 |
return 0 |
762 |
jmc |
1.132 |
elif [ $RETVAL -ne 0 -a $ENDVAL -gt 0 ] ; then |
763 |
|
|
#-- for some weird cases (run is finihed but with error code) |
764 |
jmc |
1.139 |
echo 'finished with error (run:' $RETVAL ' end:' $ENDVAL ')' |
765 |
|
|
printf '=> output from running in %s :\n' $1 1>&2 |
766 |
|
|
tail $RUNLOG | sed 's/^.*/> &/g' 1>&2 |
767 |
jmc |
1.132 |
return 0 |
768 |
edhill |
1.6 |
else |
769 |
jmc |
1.139 |
echo 'failed (run:' $RETVAL ' end:' $ENDVAL ')' |
770 |
|
|
printf '=> output from running in %s :\n' $1 1>&2 |
771 |
|
|
tail $RUNLOG | sed 's/^.*/> &/g' 1>&2 |
772 |
jmc |
1.119 |
cp $RUNLOG $CDIR"/"$RUNLOG |
773 |
edhill |
1.6 |
return 1 |
774 |
edhill |
1.1 |
fi |
775 |
|
|
) |
776 |
|
|
} |
777 |
|
|
|
778 |
|
|
createcodelet() |
779 |
|
|
{ |
780 |
|
|
# create codelet for comparing model output |
781 |
|
|
|
782 |
jmc |
1.112 |
printf "creating the comparison code (using CC=$CC)... " |
783 |
jmc |
1.91 |
cat > tr_cmpnum.c <<EOF |
784 |
edhill |
1.22 |
#include <stdio.h> |
785 |
|
|
#include <math.h> |
786 |
|
|
int main( int argc, char** argv ) { |
787 |
jmc |
1.91 |
int linnum,cmplin,best,lncnt; |
788 |
edhill |
1.52 |
double a,b,abave,relerr; |
789 |
jmc |
1.57 |
best = -22; |
790 |
adcroft |
1.33 |
lncnt = 0; |
791 |
jmc |
1.96 |
while( 1 & ( (lncnt+=1) < 999 ) ) { |
792 |
edhill |
1.22 |
scanf("%d", &linnum); |
793 |
|
|
if (linnum == -1) break; |
794 |
|
|
scanf("%lf", &a); scanf("%lf", &b); |
795 |
edhill |
1.52 |
abave = 0.5*(fabs(a)+fabs(b)); |
796 |
jmc |
1.91 |
if ( abave == abave ) { |
797 |
|
|
if (abave > 0.0) { |
798 |
|
|
relerr=fabs(a-b)/abave; |
799 |
|
|
if (relerr > 0.0) { cmplin = (int)rint(log10(relerr)); } |
800 |
|
|
else { cmplin = -16 ; } |
801 |
|
|
best = (best > cmplin) ? best : cmplin; } |
802 |
|
|
else { cmplin = -22 ; } |
803 |
|
|
/* printf("%d ; %lf ; %lf\n",cmplin,a,b); */ |
804 |
|
|
} |
805 |
|
|
else { |
806 |
|
|
/* printf("%lf ; %lf ; %lf\n",abave,a,b); */ |
807 |
|
|
break; } |
808 |
edhill |
1.22 |
} |
809 |
adcroft |
1.33 |
if (lncnt == 999) best=-29; |
810 |
jmc |
1.91 |
if (linnum != -1) best=-99; |
811 |
edhill |
1.22 |
printf("%d\n", -best); |
812 |
|
|
return 0; |
813 |
|
|
} |
814 |
|
|
EOF |
815 |
jmc |
1.91 |
$CC -o tr_cmpnum tr_cmpnum.c -lm |
816 |
edhill |
1.1 |
|
817 |
jmc |
1.91 |
if [ -x ./tr_cmpnum ]; then |
818 |
edhill |
1.1 |
echo "OK" |
819 |
|
|
return 0 |
820 |
|
|
else |
821 |
|
|
echo |
822 |
jmc |
1.135 |
echo "ERROR: failed to compile comparison code -- please specify" |
823 |
edhill |
1.58 |
echo " a C compiler using the CC environment variable." |
824 |
edhill |
1.1 |
exit 1 |
825 |
|
|
fi |
826 |
|
|
} |
827 |
|
|
|
828 |
|
|
formatresults() |
829 |
|
|
{ |
830 |
|
|
# formatresults expt genmake depend make run results* |
831 |
|
|
|
832 |
|
|
nm=$1 |
833 |
|
|
printf '%s %s %s %s' $2 $3 $4 $5 |
834 |
|
|
shift; shift; shift; shift; shift; |
835 |
jmc |
1.94 |
listPrt=$@ |
836 |
|
|
listRes=`echo $listPrt | sed 's/>//' | sed 's/<//'` |
837 |
|
|
xx=`echo $listPrt | sed 's/.*>//' | sed 's/<.*//' | awk '{print $1}'` |
838 |
jmc |
1.97 |
printf '%3s' $listPrt |
839 |
jmc |
1.98 |
# line below does not work on hp-ux_ia64 : do those substitutions later on |
840 |
jmc |
1.95 |
# printf '%3s' $listPrt | sed 's/ 99/ --/g' | sed 's/ > />/' | sed 's/ < /</' |
841 |
jmc |
1.135 |
|
842 |
jmc |
1.94 |
if [ $xx = '..' ]; then |
843 |
|
|
printf ' N/O ' |
844 |
|
|
elif [ $xx = '--' ]; then |
845 |
|
|
printf ' N/O ' |
846 |
|
|
elif [ $xx = 99 ]; then |
847 |
edhill |
1.1 |
printf ' N/O ' |
848 |
|
|
else |
849 |
jmc |
1.94 |
if [ $xx -ge $MATCH_CRIT ]; then |
850 |
edhill |
1.1 |
printf ' pass' |
851 |
|
|
else |
852 |
|
|
printf ' FAIL' |
853 |
|
|
fi |
854 |
|
|
fi |
855 |
|
|
printf ' %s' $nm |
856 |
|
|
printf '\n' |
857 |
jmc |
1.135 |
|
858 |
edhill |
1.1 |
} |
859 |
|
|
|
860 |
|
|
scandirs() |
861 |
|
|
{ |
862 |
jmc |
1.81 |
if [ $# -eq 1 ]; then |
863 |
|
|
for arg in * ; do |
864 |
jmc |
1.99 |
test -f $arg/$1 && echo $arg |
865 |
jmc |
1.81 |
done |
866 |
edhill |
1.1 |
else |
867 |
jmc |
1.81 |
echo $* |
868 |
edhill |
1.1 |
fi |
869 |
|
|
} |
870 |
|
|
|
871 |
|
|
|
872 |
jmc |
1.123 |
check_eedata() |
873 |
|
|
{ |
874 |
jmc |
1.161 |
# check_eedata eedata size.h |
875 |
jmc |
1.123 |
if [ $# -eq 2 ] ; then |
876 |
jmc |
1.161 |
if test -f $1 -a -f $2 ; then |
877 |
|
|
nx=`grep "^ *nTx *=" $1 | tail -1 | sed 's/^ *nTx *= *//' | sed "s/, *$//"` |
878 |
|
|
sx=`grep "^ & *nSx *=" $2 | sed "s/^ & *nSx *=//" | sed 's/, *$//'` |
879 |
jmc |
1.123 |
if test "x$nx" = x ; then |
880 |
|
|
rx=10 |
881 |
|
|
else |
882 |
|
|
rx=`expr $sx % $nx` |
883 |
|
|
fi |
884 |
jmc |
1.161 |
ny=`grep "^ *nTy *=" $1 | tail -1 | sed 's/^ *nTy *= *//' | sed "s/, *$//"` |
885 |
|
|
sy=`grep "^ & *nSy *=" $2 | sed "s/^ & *nSy *=//" | sed 's/, *$//'` |
886 |
jmc |
1.123 |
if test "x$ny" = x ; then |
887 |
|
|
ry=20 |
888 |
|
|
else |
889 |
|
|
ry=`expr $sy % $ny` |
890 |
|
|
fi |
891 |
|
|
echo `expr $rx + $ry` |
892 |
jmc |
1.161 |
else |
893 |
|
|
echo '-1' |
894 |
|
|
fi |
895 |
|
|
elif [ $# -eq 1 ] ; then |
896 |
|
|
if test -f $1 ; then |
897 |
|
|
nx=`grep "^ *nTx *=" $1 | tail -1 | sed 's/^ *nTx *= *//' | sed "s/, *$//"` |
898 |
|
|
if test "x$nx" = x ; then nx=1 ; fi |
899 |
|
|
ny=`grep "^ *nTy *=" $1 | tail -1 | sed 's/^ *nTy *= *//' | sed "s/, *$//"` |
900 |
|
|
if test "x$ny" = x ; then ny=1 ; fi |
901 |
|
|
#echo $nx $ny |
902 |
|
|
echo $nx |
903 |
|
|
else |
904 |
jmc |
1.123 |
echo '-1' |
905 |
jmc |
1.161 |
fi |
906 |
jmc |
1.123 |
else |
907 |
|
|
echo '-2' |
908 |
|
|
fi |
909 |
|
|
|
910 |
|
|
} |
911 |
|
|
|
912 |
edhill |
1.1 |
############################################################################### |
913 |
|
|
|
914 |
|
|
|
915 |
|
|
# Default properties |
916 |
|
|
debug=0 |
917 |
|
|
verbose=1 |
918 |
edhill |
1.10 |
|
919 |
edhill |
1.40 |
IEEE=true |
920 |
edhill |
1.10 |
if test "x$MITGCM_IEEE" != x ; then |
921 |
|
|
IEEE=$MITGCM_IEEE |
922 |
|
|
fi |
923 |
jmc |
1.109 |
GSL=f |
924 |
edhill |
1.10 |
|
925 |
|
|
CLEANUP=f |
926 |
jmc |
1.133 |
NORUN=f |
927 |
edhill |
1.10 |
QUICK=f |
928 |
jmc |
1.136 |
NOMAKE=f |
929 |
edhill |
1.10 |
NOGENMAKE=f |
930 |
|
|
NOCLEAN=f |
931 |
|
|
NODEPEND=f |
932 |
jmc |
1.156 |
POSTCLEAN=0 |
933 |
edhill |
1.1 |
|
934 |
edhill |
1.4 |
BASH= |
935 |
edhill |
1.10 |
OPTFILE=NONE |
936 |
|
|
ADDRESSES= |
937 |
edhill |
1.1 |
TESTDIRS= |
938 |
jmc |
1.89 |
SKIPDIRS= |
939 |
edhill |
1.1 |
MPACKDIR="../tools/mpack-1.6" |
940 |
edhill |
1.20 |
HAVE_MPACK= |
941 |
jmc |
1.113 |
MPACK= |
942 |
edhill |
1.24 |
COMMAND= |
943 |
jmc |
1.141 |
MKDEPEND= |
944 |
edhill |
1.59 |
if test "x$MAKE" = x ; then |
945 |
|
|
MAKE=make |
946 |
|
|
fi |
947 |
|
|
if test "x$CC" = x ; then |
948 |
|
|
CC=cc |
949 |
|
|
fi |
950 |
edhill |
1.43 |
JOBS= |
951 |
jmc |
1.154 |
MPI=0 |
952 |
jmc |
1.156 |
MPI_MFILE= |
953 |
jmc |
1.83 |
MULTI_THREAD=f |
954 |
jmc |
1.70 |
OUTDIR= |
955 |
edhill |
1.40 |
DELDIR= |
956 |
jmc |
1.135 |
USE_R4= |
957 |
edhill |
1.1 |
|
958 |
edhill |
1.24 |
ADM= |
959 |
utke |
1.120 |
OADM= |
960 |
edhill |
1.24 |
|
961 |
jmc |
1.117 |
# list of pTracers to check for monitor output |
962 |
edhill |
1.50 |
PTRACERS_NUM="1 2 3 4 5" |
963 |
edhill |
1.49 |
|
964 |
jmc |
1.147 |
MATCH_CRIT=10 |
965 |
jmc |
1.92 |
|
966 |
edhill |
1.34 |
printf "parsing options... " |
967 |
edhill |
1.1 |
|
968 |
|
|
ac_prev= |
969 |
|
|
for ac_option ; do |
970 |
|
|
|
971 |
|
|
# If the previous option needs an argument, assign it. |
972 |
|
|
if test -n "$ac_prev"; then |
973 |
|
|
eval "$ac_prev=\$ac_option" |
974 |
|
|
ac_prev= |
975 |
|
|
continue |
976 |
|
|
fi |
977 |
|
|
|
978 |
|
|
ac_optarg=`expr "x$ac_option" : 'x[^=]*=\(.*\)'` |
979 |
jmc |
1.135 |
|
980 |
edhill |
1.1 |
case $ac_option in |
981 |
|
|
|
982 |
jmc |
1.156 |
-help | --help | -h | --h) usage ;; |
983 |
|
|
|
984 |
|
|
-optfile | --optfile | -of | --of) ac_prev=OPTFILE ;; |
985 |
|
|
-optfile=* | --optfile=* | -of=* | --of=*) OPTFILE=$ac_optarg ;; |
986 |
|
|
|
987 |
|
|
-addr | --addr | -a | --a) ac_prev=ADDRESSES ;; |
988 |
|
|
-addr=* | --addr=* | -a=* | --a=*) ADDRESSES=$ac_optarg ;; |
989 |
|
|
-mpackdir | --mpackdir | -mpd | --mpd) ac_prev=MPACKDIR ;; |
990 |
|
|
-mpackdir=* | --mpackdir=* | -mpd=* | --mpd=*) MPACKDIR=$ac_optarg ;; |
991 |
|
|
|
992 |
|
|
-tdir | --tdir | -t | --t) ac_prev=TESTDIRS ;; |
993 |
|
|
-tdir=* | --tdir=* | -t=* | --t=*) TESTDIRS=$ac_optarg ;; |
994 |
|
|
-skipdir | --skipdir | -skd | --skd) ac_prev=SKIPDIRS ;; |
995 |
|
|
-skipdir=* | --skipdir=* | -skd=* | --skd=*) SKIPDIRS=$ac_optarg ;; |
996 |
|
|
|
997 |
|
|
-bash | --bash | -b | --b) ac_prev=BASH ;; |
998 |
|
|
-bash=* | --bash=* | -b=* | --b=*) BASH=$ac_optarg ;; |
999 |
|
|
|
1000 |
|
|
-command | --command | -c | --c) ac_prev=COMMAND ;; |
1001 |
|
|
-command=* | --command=* | -c=* | --c=*) COMMAND=$ac_optarg ;; |
1002 |
|
|
|
1003 |
|
|
-makedepend | --makedepend | -md | --md) ac_prev=MKDEPEND ;; |
1004 |
|
|
-makedepend=* | --makedepend=* | -md=* | --md=*) MKDEPEND=$ac_optarg ;; |
1005 |
|
|
|
1006 |
|
|
-make | --make | -m | --m) ac_prev=MAKE ;; |
1007 |
|
|
-make=* | --make=* | -m=* | --m=*) MAKE=$ac_optarg ;; |
1008 |
|
|
|
1009 |
|
|
-odir | --odir) ac_prev=OUTDIR ;; |
1010 |
|
|
-odir=* | --odir=*) OUTDIR=$ac_optarg ;; |
1011 |
|
|
|
1012 |
|
|
-ptracers | --ptracers | -ptr | --ptr) ac_prev=PTRACERS_NUM ;; |
1013 |
|
|
-ptracers=* | --ptracers=* | -ptr=* | --ptr=*) PTRACERS_NUM=$ac_optarg ;; |
1014 |
edhill |
1.50 |
|
1015 |
jmc |
1.92 |
-match | --match ) ac_prev=MATCH_CRIT ;; |
1016 |
|
|
-match=* | --match=* ) MATCH_CRIT=$ac_optarg ;; |
1017 |
|
|
|
1018 |
jmc |
1.136 |
-j | --j) ac_prev=JOBS ;; |
1019 |
|
|
-j=* | --j=*) JOBS=$ac_optarg ;; |
1020 |
edhill |
1.43 |
|
1021 |
jmc |
1.156 |
-clean | --clean) CLEANUP=t ; DELDIR=t ;; |
1022 |
edhill |
1.10 |
|
1023 |
jmc |
1.156 |
-norun | --norun | -nr | --nr) NORUN=t ;; |
1024 |
|
|
-runonly | --runonly | -ro | --ro) QUICK=t ; NOMAKE=t ;; |
1025 |
|
|
-quick | --quick | -q | --q) QUICK=t ;; |
1026 |
|
|
-nogenmake | --nogenmake | -ng | --ng) NOGENMAKE=t ;; |
1027 |
|
|
-noclean | --noclean | -nc | --nc) NOCLEAN=t ;; |
1028 |
|
|
-nodepend | --nodepend | -nd | --nd) NODEPEND=t ;; |
1029 |
edhill |
1.10 |
|
1030 |
jmc |
1.156 |
-postclean | --postclean | -pc | --pc) POSTCLEAN=2 ;; |
1031 |
|
|
-deloutp | --deloutp | -do | --do) POSTCLEAN=1 ;; |
1032 |
edhill |
1.68 |
|
1033 |
jmc |
1.154 |
-mpi | --mpi) MPI=2 ;; |
1034 |
|
|
-MPI | --MPI) ac_prev=MPI ;; |
1035 |
|
|
-MPI=* | --MPI=*) MPI=$ac_optarg ;; |
1036 |
edhill |
1.10 |
|
1037 |
jmc |
1.156 |
-mfile | --mfile | -mf | --mf) ac_prev=MPI_MFILE ;; |
1038 |
|
|
-mfile=* | --mfile=* | -mf=* | --mf=*) MPI_MFILE=$ac_optarg ;; |
1039 |
|
|
|
1040 |
jmc |
1.83 |
-mth) MULTI_THREAD=t ;; |
1041 |
|
|
|
1042 |
edhill |
1.24 |
-adm | -ad) ADM=t ;; |
1043 |
utke |
1.120 |
-oad) OADM=t; NODEPEND=t ;; |
1044 |
|
|
|
1045 |
edhill |
1.10 |
-ieee) IEEE=true ;; |
1046 |
|
|
-noieee) IEEE= ;; |
1047 |
jmc |
1.156 |
-gsl) GSL=t ;; |
1048 |
edhill |
1.10 |
|
1049 |
edhill |
1.1 |
-verbose) verbose=2 ;; |
1050 |
|
|
-debug) debug=1 ;; |
1051 |
|
|
-quiet) verbose=0 ;; |
1052 |
|
|
|
1053 |
edhill |
1.40 |
-deldir | -dd) DELDIR=t ;; |
1054 |
|
|
|
1055 |
jmc |
1.136 |
-use_r4|-ur4) USE_R4=t ;; |
1056 |
jmc |
1.135 |
|
1057 |
ce107 |
1.90 |
-ts) TS=t;; |
1058 |
|
|
-papis) PAPIS=t;; |
1059 |
|
|
-pcls) PCL=t;; |
1060 |
|
|
|
1061 |
jmc |
1.156 |
-*) echo "Error: unrecognized option: "$ac_option |
1062 |
|
|
usage ;; |
1063 |
|
|
*) echo "Error: unrecognized argument: "$ac_option |
1064 |
|
|
usage ;; |
1065 |
jmc |
1.135 |
|
1066 |
edhill |
1.1 |
esac |
1067 |
jmc |
1.135 |
|
1068 |
edhill |
1.1 |
done |
1069 |
|
|
|
1070 |
edhill |
1.10 |
if test "x$QUICK" = xt ; then |
1071 |
|
|
NOGENMAKE=t |
1072 |
|
|
NOCLEAN=t |
1073 |
|
|
NODEPEND=t |
1074 |
|
|
fi |
1075 |
|
|
|
1076 |
jmc |
1.156 |
#- check length of MPI machine file: |
1077 |
|
|
if test "x$MPI" != x0 -a "x$MPI_MFILE" != x ; then |
1078 |
|
|
if test -r $MPI_MFILE ; then |
1079 |
|
|
nl=`wc -l $MPI_MFILE | awk '{print $1}'` |
1080 |
|
|
if [ $nl -lt $MPI ] ; then |
1081 |
|
|
echo "Error: need at least $MPI nodes (currently only $nl) in MPI_MFILE=$MPI_FILE" |
1082 |
|
|
usage |
1083 |
|
|
fi |
1084 |
|
|
if [ $verbose -gt 1 ]; then |
1085 |
|
|
echo " MPI_MFILE=$MPI_MFILE : $nl procs for MPI=$MPI run" |
1086 |
|
|
fi |
1087 |
|
|
else |
1088 |
|
|
echo "Error: cannot access MPI_MFILE=$MPI_FILE" |
1089 |
|
|
usage |
1090 |
|
|
fi |
1091 |
|
|
fi |
1092 |
|
|
|
1093 |
jmc |
1.99 |
#- setting for forward or ADM testing |
1094 |
|
|
if test "x$ADM" = xt ; then |
1095 |
|
|
code_dir=code_ad |
1096 |
jmc |
1.108 |
inputdir=input_ad |
1097 |
jmc |
1.99 |
ref_outp="output_adm.txt" |
1098 |
|
|
EXECUTABLE="mitgcmuv_ad" |
1099 |
utke |
1.120 |
elif test "x$OADM" = xt ; then |
1100 |
|
|
code_dir=code_oad |
1101 |
|
|
inputdir=input_oad |
1102 |
|
|
ref_outp="output_oadm.txt" |
1103 |
|
|
EXECUTABLE="mitgcmuv_ad" |
1104 |
jmc |
1.99 |
else |
1105 |
|
|
code_dir=code |
1106 |
jmc |
1.108 |
inputdir=input |
1107 |
jmc |
1.99 |
ref_outp="output.txt" |
1108 |
|
|
EXECUTABLE="mitgcmuv" |
1109 |
|
|
fi |
1110 |
|
|
|
1111 |
jmc |
1.142 |
xx=`echo $TESTDIRS | awk '{print $1}'` |
1112 |
edhill |
1.1 |
if test "x$TESTDIRS" = x ; then |
1113 |
jmc |
1.103 |
LIST=`scandirs results/$ref_outp` |
1114 |
jmc |
1.142 |
elif test $xx = 'start_from' ; then |
1115 |
|
|
xx=`echo $TESTDIRS | awk '{print $2}'` |
1116 |
|
|
LIST=`scandirs results/$ref_outp | sed -n "/$xx/,$ p"` |
1117 |
jmc |
1.84 |
else |
1118 |
|
|
#- expand group of experiments: |
1119 |
|
|
LIST=" " |
1120 |
|
|
for xx in $TESTDIRS |
1121 |
|
|
do |
1122 |
|
|
case $xx in |
1123 |
jmc |
1.86 |
'basic') LIST=${LIST}" aim.5l_cs hs94.128x64x5 ideal_2D_oce" |
1124 |
|
|
LIST=${LIST}" lab_sea tutorial_baroclinic_gyre" |
1125 |
|
|
LIST=${LIST}" tutorial_global_oce_latlon tutorial_plume_on_slope" |
1126 |
jmc |
1.84 |
;; |
1127 |
|
|
'tutorials') |
1128 |
|
|
LIST=${LIST}" "`ls | grep 'tutorial_'` ;; |
1129 |
|
|
*) LIST=${LIST}" "$xx ;; |
1130 |
|
|
esac |
1131 |
jmc |
1.135 |
done |
1132 |
jmc |
1.89 |
fi |
1133 |
|
|
#echo 'LIST='${LIST}'<' |
1134 |
|
|
#- skip dirs, remove duplicate and non-directory: |
1135 |
|
|
TESTDIRS=" " |
1136 |
|
|
count=0 |
1137 |
|
|
for xx in $LIST |
1138 |
|
|
do |
1139 |
|
|
yy=`echo $SKIPDIRS | grep -c $xx` |
1140 |
|
|
if test $yy = 0 ; then |
1141 |
jmc |
1.84 |
if test -d $xx ; then |
1142 |
|
|
yy=`echo $TESTDIRS | grep -c $xx` |
1143 |
|
|
if test $yy = 0 ; then TESTDIRS=${TESTDIRS}" "$xx ; fi |
1144 |
jmc |
1.89 |
else count=1 ; |
1145 |
|
|
echo ""; echo -n " -- skip \"$xx\" (not a directory !)" |
1146 |
|
|
fi |
1147 |
|
|
else |
1148 |
|
|
if test $count = 1 ; then echo -n ", \"$xx\"" |
1149 |
|
|
else count=1 ; echo "" ; echo -n " skip: \"$xx\"" |
1150 |
jmc |
1.84 |
fi |
1151 |
jmc |
1.89 |
fi |
1152 |
jmc |
1.135 |
done |
1153 |
jmc |
1.89 |
if test $count = 1 ; then echo "" ; echo -n " ... " ; fi |
1154 |
jmc |
1.84 |
#echo 'TESTDIRS='${TESTDIRS}'<' |
1155 |
edhill |
1.1 |
|
1156 |
edhill |
1.10 |
if test "x$OPTFILE" = xNONE -a "x$MITGCM_OF" != x ; then |
1157 |
|
|
OPTFILE=$MITGCM_OF |
1158 |
|
|
fi |
1159 |
|
|
|
1160 |
jmc |
1.156 |
LOC_MFILE='tr_mpi_mfile' |
1161 |
jmc |
1.146 |
RUNLOG="run.tr_log" |
1162 |
jmc |
1.99 |
OUTPUTFILE=$ref_outp |
1163 |
jmc |
1.87 |
if test "x$COMMAND" = x ; then |
1164 |
jmc |
1.77 |
COMMAND="./$EXECUTABLE > $OUTPUTFILE" |
1165 |
edhill |
1.24 |
fi |
1166 |
jmc |
1.154 |
if test "x$MPI" != x0 ; then |
1167 |
jmc |
1.87 |
OUTPUTFILE="STDOUT.0000" |
1168 |
edhill |
1.24 |
fi |
1169 |
|
|
|
1170 |
jmc |
1.76 |
echo "OK (COMMAND= $COMMAND )" |
1171 |
edhill |
1.1 |
|
1172 |
jmc |
1.94 |
# set the Default List of output variables to be checked: |
1173 |
|
|
# (use default or load experiment-specific list from file "tr_checklist") |
1174 |
|
|
# content : 1rst = main variable used to decide if it pass or FAIL |
1175 |
|
|
# others = number of matching digits to be printed in summary.txt |
1176 |
utke |
1.120 |
if test "x$ADM" = x -a "x$OADM" = x; then |
1177 |
jmc |
1.94 |
DEF_CHECK_LIST='PS PS T+ S+ U+ V+ pt1+ pt2+ pt3+ pt4+ pt5+' |
1178 |
|
|
EMPTY_RESULTS='.. .. .. .. .. .. .. .. .. .. .. .. .. .. .. .. ..' |
1179 |
jmc |
1.97 |
LEN_CHECK_LIST=`echo $DEF_CHECK_LIST | sed 's/ [a-zA-Z0-9]*+/&mn &mx &av &sd/g' | awk '{print NF-1}'` |
1180 |
jmc |
1.94 |
ii=`echo $EMPTY_RESULTS | awk '{print NF}'` |
1181 |
jmc |
1.97 |
EMPTY_RESULTS=$EMPTY_RESULTS`expr $LEN_CHECK_LIST - $ii | awk 'BEGIN{FS=":"}{for(i=1;i<=$1;i++){printf " ."}}'` |
1182 |
jmc |
1.99 |
else |
1183 |
jmc |
1.103 |
DEF_CHECK_LIST='Grad Cost Grad' |
1184 |
jmc |
1.99 |
EMPTY_RESULTS='.. ..' |
1185 |
|
|
LEN_CHECK_LIST=`echo $DEF_CHECK_LIST | sed 's/ [a-zA-Z0-9]*+/&mn &mx &av &sd/g' | awk '{print NF-1}'` |
1186 |
jmc |
1.94 |
fi |
1187 |
|
|
|
1188 |
edhill |
1.1 |
# create the FORTRAN comparison code |
1189 |
jmc |
1.133 |
if test -x tr_cmpnum ; then |
1190 |
|
|
echo "skipping comparison code build" |
1191 |
|
|
else |
1192 |
|
|
createcodelet |
1193 |
|
|
fi |
1194 |
edhill |
1.1 |
|
1195 |
jmc |
1.112 |
# build the mpack utility (if ADDRESSES = NONE, do it to test the build) |
1196 |
|
|
if test "x$ADDRESSES" = x ; then |
1197 |
edhill |
1.32 |
echo "skipping mpack build" |
1198 |
|
|
else |
1199 |
edhill |
1.31 |
build_mpack |
1200 |
|
|
fi |
1201 |
edhill |
1.1 |
|
1202 |
|
|
# Create a uniquely named directory to store results |
1203 |
jmc |
1.110 |
CMDLINE=$0 |
1204 |
jmc |
1.118 |
for xx in "$@" ; do nw=`echo $xx | wc -w` |
1205 |
|
|
if test $nw = '1' ; then CMDLINE="$CMDLINE $xx" |
1206 |
|
|
else CMDLINE="$CMDLINE '$xx'" ; fi |
1207 |
|
|
done |
1208 |
|
|
#for xx in "$@" ; do CMDLINE="$CMDLINE '$xx'" ; done |
1209 |
edhill |
1.1 |
MACH=`hostname` |
1210 |
edhill |
1.2 |
UNAMEA=`uname -a` |
1211 |
edhill |
1.1 |
DATE=`date +%Y%m%d` |
1212 |
edhill |
1.25 |
BASE="tr_"$MACH"_"$DATE"_" |
1213 |
jmc |
1.70 |
if test "x$OUTDIR" != x ; then |
1214 |
|
|
BASE="tr_"$OUTDIR"_"$DATE"_" |
1215 |
jmc |
1.121 |
else |
1216 |
|
|
short_name=`hostname | sed 's/\..*$//'` |
1217 |
|
|
BASE="tr_"$short_name"_"$DATE"_" |
1218 |
jmc |
1.70 |
fi |
1219 |
edhill |
1.1 |
DNUM=0 |
1220 |
|
|
DRESULTS="$BASE$DNUM" |
1221 |
|
|
while test -e $DRESULTS ; do |
1222 |
|
|
DNUM=$(( $DNUM + 1 )) |
1223 |
|
|
DRESULTS="$BASE$DNUM" |
1224 |
|
|
done |
1225 |
|
|
mkdir $DRESULTS |
1226 |
|
|
RETVAL=$? |
1227 |
|
|
if test "x$RETVAL" != x0 ; then |
1228 |
edhill |
1.20 |
echo "ERROR: Can't create results directory \"./$DRESULTS\"" |
1229 |
edhill |
1.1 |
exit 1 |
1230 |
|
|
fi |
1231 |
|
|
SUMMARY="$DRESULTS/summary.txt" |
1232 |
edhill |
1.16 |
start_date=`date` |
1233 |
edhill |
1.17 |
echo $start_date > $SUMMARY |
1234 |
jmc |
1.110 |
echo 'run:' $CMDLINE >> $SUMMARY |
1235 |
|
|
echo 'on :' $UNAMEA >> $SUMMARY |
1236 |
edhill |
1.1 |
|
1237 |
edhill |
1.11 |
of_path= |
1238 |
edhill |
1.10 |
if test "x$OPTFILE" != xNONE ; then |
1239 |
|
|
if test -r $OPTFILE ; then |
1240 |
edhill |
1.11 |
# get the path |
1241 |
|
|
path=${OPTFILE%/*} |
1242 |
|
|
if test "x$path" = x ; then |
1243 |
|
|
of_path=`pwd` |
1244 |
|
|
else |
1245 |
|
|
of_path=`( cd $path > /dev/null 2>&1 ; pwd )` |
1246 |
|
|
fi |
1247 |
|
|
file=${OPTFILE##*/} |
1248 |
|
|
OPTFILE=$of_path/$file |
1249 |
edhill |
1.21 |
cp $OPTFILE $DRESULTS |
1250 |
|
|
echo >> $SUMMARY |
1251 |
|
|
echo " OPTFILE=$OPTFILE" >> $SUMMARY |
1252 |
edhill |
1.11 |
else |
1253 |
edhill |
1.21 |
echo | tee $SUMMARY |
1254 |
|
|
echo "ERROR: can't read OPTFILE=\"$OPTFILE\"" | tee $SUMMARY |
1255 |
|
|
exit 1 |
1256 |
edhill |
1.10 |
fi |
1257 |
edhill |
1.21 |
else |
1258 |
|
|
echo >> $SUMMARY |
1259 |
jmc |
1.152 |
echo "No \"OPTFILE\" was specified ; genmake2 found and uses:" >> $SUMMARY |
1260 |
|
|
#-note: to be filled later after 1rst run |
1261 |
edhill |
1.10 |
fi |
1262 |
|
|
echo |
1263 |
|
|
echo >> $SUMMARY |
1264 |
utke |
1.120 |
if test "x$ADM" = x -a "x$OADM" = x; then |
1265 |
jmc |
1.135 |
if [ $MATCH_CRIT -lt 10 ] ; |
1266 |
|
|
then line_0="default "$MATCH_CRIT ; |
1267 |
jmc |
1.94 |
else line_0="default "$MATCH_CRIT ; fi |
1268 |
|
|
line_0="$line_0 ----T----- ----S----- ----U----- ----V-----" |
1269 |
edhill |
1.49 |
line_1="G D M c m s m s m s m s" |
1270 |
|
|
line_2="E p a R g m m e . m m e . m m e . m m e ." |
1271 |
|
|
line_3="N n k u 2 i a a d i a a d i a a d i a a d" |
1272 |
|
|
line_4="2 d e n d n x n . n x n . n x n . n x n ." |
1273 |
edhill |
1.50 |
for ii in $PTRACERS_NUM ; do |
1274 |
edhill |
1.49 |
line_0="$line_0 --PTR 0"$ii"--" |
1275 |
|
|
line_1="$line_1 m s" |
1276 |
|
|
line_2="$line_2 m m e ." |
1277 |
|
|
line_3="$line_3 i a a d" |
1278 |
|
|
line_4="$line_4 n x n ." |
1279 |
|
|
done |
1280 |
|
|
echo "$line_0" | tee -a $SUMMARY |
1281 |
|
|
echo "$line_1" | tee -a $SUMMARY |
1282 |
|
|
echo "$line_2" | tee -a $SUMMARY |
1283 |
|
|
echo "$line_3" | tee -a $SUMMARY |
1284 |
|
|
echo "$line_4" | tee -a $SUMMARY |
1285 |
|
|
echo " " | tee -a $SUMMARY |
1286 |
edhill |
1.24 |
else |
1287 |
|
|
echo "ADJOINT=true" >> $SUMMARY |
1288 |
|
|
echo >> $SUMMARY |
1289 |
jmc |
1.135 |
if [ $MATCH_CRIT -lt 10 ] ; |
1290 |
|
|
then line_0="default "$MATCH_CRIT ; |
1291 |
jmc |
1.103 |
else line_0="default "$MATCH_CRIT ; fi |
1292 |
jmc |
1.100 |
echo "$line_0" | tee -a $SUMMARY |
1293 |
edhill |
1.24 |
cat << EOF | tee -a $SUMMARY |
1294 |
|
|
G D M C G |
1295 |
|
|
E p a R o r |
1296 |
|
|
N n k u s a |
1297 |
|
|
2 d e n t d |
1298 |
|
|
|
1299 |
|
|
EOF |
1300 |
|
|
fi |
1301 |
jmc |
1.139 |
echo "-------------------------------------------------------------------------------" |
1302 |
edhill |
1.1 |
|
1303 |
edhill |
1.10 |
# ...and each test directory... |
1304 |
|
|
for dir in $TESTDIRS ; do |
1305 |
jmc |
1.135 |
|
1306 |
jmc |
1.106 |
# set builddir & rundir: |
1307 |
|
|
builddir="build" |
1308 |
|
|
if test ! -d $dir/$builddir ; then mkdir $dir/$builddir ; fi |
1309 |
|
|
rundir="run" |
1310 |
jmc |
1.143 |
pfxdir="tr_$rundir" |
1311 |
jmc |
1.106 |
if test ! -d $dir/$rundir ; then |
1312 |
|
|
rundir=$builddir |
1313 |
|
|
fi |
1314 |
|
|
CODE_DIR=$dir/$code_dir |
1315 |
|
|
BUILD_DIR=$dir/$builddir |
1316 |
|
|
|
1317 |
edhill |
1.10 |
# Cleanup only! |
1318 |
|
|
if test "x$CLEANUP" = xt ; then |
1319 |
jmc |
1.127 |
echo -n ' --- dir:' $BUILD_DIR ': ' |
1320 |
|
|
makeclean $BUILD_DIR |
1321 |
jmc |
1.145 |
( cd $BUILD_DIR |
1322 |
|
|
rm -f $EXECUTABLE *.bak |
1323 |
jmc |
1.146 |
rm -f genmake_state genmake_*optfile genmake.log |
1324 |
jmc |
1.154 |
rm -f SIZE.h.mpi genmake.tr_log make.tr_log |
1325 |
jmc |
1.145 |
) |
1326 |
jmc |
1.106 |
if test -d $dir/$rundir/CVS ; then |
1327 |
jmc |
1.127 |
echo -n ' --- dir:' $dir/$rundir ': ' |
1328 |
jmc |
1.106 |
run_clean $dir/$rundir |
1329 |
edhill |
1.10 |
fi |
1330 |
jmc |
1.143 |
trdir=`( cd $dir ; find . -type d -name "$pfxdir.*" -print | sed 's/^.\///')` |
1331 |
jmc |
1.127 |
ttd=`echo $trdir | wc -w` |
1332 |
|
|
if test $ttd != 0 ; then |
1333 |
|
|
echo ' --- rm dir:' $trdir |
1334 |
|
|
( cd $dir ; rm -rf $trdir ) |
1335 |
|
|
fi |
1336 |
edhill |
1.10 |
continue |
1337 |
edhill |
1.1 |
fi |
1338 |
edhill |
1.3 |
|
1339 |
jmc |
1.135 |
# Verify that the testdir exists and contains previous |
1340 |
edhill |
1.10 |
# results in the correct location--or skip this directory! |
1341 |
jmc |
1.104 |
fout=$dir"/results/"$ref_outp |
1342 |
edhill |
1.24 |
if test ! -r $fout ; then |
1343 |
|
|
echo "can't read \"$fout\" -- skipping $dir" |
1344 |
edhill |
1.10 |
continue |
1345 |
|
|
fi |
1346 |
edhill |
1.7 |
|
1347 |
jmc |
1.117 |
# Check for specific files for particular type of run |
1348 |
edhill |
1.49 |
|
1349 |
jmc |
1.161 |
if test ! -r $CODE_DIR"/SIZE.h_mpi" -a "x$MPI" != "x0" ; then |
1350 |
|
|
echo "can't find \"$CODE_DIR/SIZE.h_mpi\" -- skipping $dir" |
1351 |
|
|
continue |
1352 |
|
|
fi |
1353 |
|
|
if test ! -r $dir"/input/eedata.mth" -a "x$MULTI_THREAD" = "xt" ; then |
1354 |
|
|
echo "can't find \"$dir/input/eedata.mth\" -- skipping $dir" |
1355 |
|
|
continue |
1356 |
|
|
fi |
1357 |
|
|
|
1358 |
jmc |
1.154 |
if test "x$MPI" != "x0" ; then |
1359 |
jmc |
1.161 |
prefer_X=0 |
1360 |
|
|
if test "x$MULTI_THREAD" = "xt" ; then |
1361 |
|
|
retv=`check_eedata $dir"/input/eedata.mth"` |
1362 |
|
|
if test $retv = 1 ; then prefer_X=1 ; fi |
1363 |
|
|
fi |
1364 |
|
|
#- create new SIZE.h with no more than '$MPI' Procs |
1365 |
|
|
mk_mpi_size $CODE_DIR"/SIZE.h_mpi" $BUILD_DIR"/tr_size.mpi" $MPI $prefer_X |
1366 |
|
|
LOC_NPROC=$? |
1367 |
|
|
( cd $BUILD_DIR |
1368 |
|
|
if test -r SIZE.h.mpi ; then |
1369 |
|
|
cmp tr_size.mpi SIZE.h.mpi > /dev/null 2>&1 ; RETVAL=$? |
1370 |
|
|
else RETVAL=1 |
1371 |
|
|
fi |
1372 |
|
|
if test "x$RETVAL" = x0 ; then |
1373 |
|
|
rm -f tr_size.mpi |
1374 |
|
|
else |
1375 |
|
|
rm -f SIZE.h.mpi ; mv tr_size.mpi SIZE.h.mpi |
1376 |
|
|
fi |
1377 |
|
|
) |
1378 |
jmc |
1.156 |
if test "x$MPI_MFILE" != x ; then |
1379 |
|
|
#- create new MPI machine-file with the right number of Procs |
1380 |
|
|
rm -f $LOC_MFILE |
1381 |
|
|
cat $MPI_MFILE | sort | uniq | head -$LOC_NPROC > $LOC_MFILE |
1382 |
|
|
nl=`wc -l $LOC_MFILE | awk '{print $1}'` |
1383 |
|
|
if [ $nl -lt $LOC_NPROC ] ; then |
1384 |
|
|
rm -f $LOC_MFILE |
1385 |
|
|
cat $MPI_MFILE | head -$LOC_NPROC > $LOC_MFILE |
1386 |
|
|
#sed -n "1,$LOC_NPROC p" $MPI_MFILE > $LOC_MFILE |
1387 |
|
|
fi |
1388 |
|
|
if [ $verbose -gt 1 ]; then |
1389 |
|
|
nl=`wc -l $LOC_MFILE | awk '{print $1}'` |
1390 |
|
|
echo " new LOC_MFILE=$LOC_MFILE : $nl procs for LOC_NPROC=$LOC_NPROC" |
1391 |
|
|
fi |
1392 |
|
|
fi |
1393 |
jmc |
1.161 |
if test "x$MULTI_THREAD" = "xt" ; then |
1394 |
|
|
retv=`check_eedata $dir"/input/eedata.mth" $BUILD_DIR"/SIZE.h.mpi"` |
1395 |
|
|
if test $retv != 0 ; then |
1396 |
|
|
echo "input/eedata.mth tiling misfit -- skipping $dir" |
1397 |
|
|
continue |
1398 |
|
|
fi |
1399 |
jmc |
1.154 |
fi |
1400 |
jmc |
1.123 |
fi |
1401 |
jmc |
1.83 |
|
1402 |
|
|
# Check whether there are "extra runs" for this testdir |
1403 |
|
|
extra_runs= |
1404 |
jmc |
1.133 |
if test "x$NORUN" = xf ; then |
1405 |
|
|
ex_run_dirs=`( cd $dir ; echo $inputdir.* )` |
1406 |
|
|
fi |
1407 |
jmc |
1.108 |
#echo "ex_run_dirs='$ex_run_dirs'" |
1408 |
|
|
for exd in $ex_run_dirs ; do |
1409 |
|
|
name=`echo $exd | sed -e "s/$inputdir\.//"` |
1410 |
|
|
refExOut=`echo $ref_outp | sed "s/\./.${name}./"` |
1411 |
|
|
outf="$dir/results/$refExOut" |
1412 |
|
|
if test -f $outf -a -r $outf ; then |
1413 |
jmc |
1.135 |
if test "x$MULTI_THREAD" = "xt" ; then |
1414 |
jmc |
1.123 |
if test -r $dir"/"$exd"/eedata.mth" ; then |
1415 |
jmc |
1.154 |
if test "x$MPI" = "x0" ; then |
1416 |
|
|
extra_runs="$extra_runs $name" |
1417 |
|
|
else |
1418 |
jmc |
1.161 |
retv=`check_eedata $dir"/"$exd"/eedata.mth" $BUILD_DIR"/SIZE.h.mpi"` |
1419 |
jmc |
1.123 |
if test $retv = 0 ; then |
1420 |
jmc |
1.83 |
extra_runs="$extra_runs $name" |
1421 |
jmc |
1.123 |
else |
1422 |
|
|
echo $exd"/eedata.mth tiling misfit -- skipping $dir" |
1423 |
jmc |
1.83 |
fi |
1424 |
jmc |
1.123 |
fi |
1425 |
|
|
#else echo $dir"/"$exd"/eedata.mth: not found" |
1426 |
jmc |
1.83 |
fi |
1427 |
jmc |
1.123 |
else |
1428 |
|
|
extra_runs="$extra_runs $name" |
1429 |
|
|
fi |
1430 |
jmc |
1.108 |
fi |
1431 |
|
|
done |
1432 |
edhill |
1.28 |
|
1433 |
|
|
echo |
1434 |
jmc |
1.135 |
if test "x$extra_runs" = "x" ; then |
1435 |
jmc |
1.83 |
echo "Experiment: $dir" |
1436 |
|
|
else |
1437 |
|
|
echo "Experiment: $dir ; extra_runs=$extra_runs" |
1438 |
|
|
fi |
1439 |
edhill |
1.28 |
echo |
1440 |
|
|
unset genmake makedepend make run |
1441 |
jmc |
1.94 |
results=$EMPTY_RESULTS |
1442 |
edhill |
1.10 |
|
1443 |
jmc |
1.158 |
# Create an output dir & summary.txt file for each tested experiment (tdir) |
1444 |
jmc |
1.138 |
locDIR=$DRESULTS"/"$dir |
1445 |
|
|
mkdir $locDIR |
1446 |
jmc |
1.158 |
#- report to this experiment local summary file --- |
1447 |
|
|
echo "DATE='$DATE' ; tdir='$dir'" > $locDIR"/summary.txt" |
1448 |
|
|
echo "MACH='$MACH'" >> $locDIR"/summary.txt" |
1449 |
|
|
echo "UNAMEA='$UNAMEA'" >> $locDIR"/summary.txt" |
1450 |
jmc |
1.138 |
CDIR=`pwd`"/$locDIR" |
1451 |
jmc |
1.135 |
|
1452 |
jmc |
1.133 |
if test "x$NORUN" = xt ; then |
1453 |
|
|
run=N |
1454 |
|
|
genmakemodel $dir/$builddir && genmake=Y \ |
1455 |
|
|
&& makeclean $dir/$builddir \ |
1456 |
|
|
&& symlink_mpifiles $dir $code_dir $builddir \ |
1457 |
|
|
&& makedependmodel $dir/$builddir && makedepend=Y \ |
1458 |
|
|
&& makemodel $dir/$builddir && make=Y |
1459 |
edhill |
1.10 |
else |
1460 |
edhill |
1.1 |
genmakemodel $dir/$builddir && genmake=Y \ |
1461 |
|
|
&& makeclean $dir/$builddir \ |
1462 |
edhill |
1.27 |
&& symlink_mpifiles $dir $code_dir $builddir \ |
1463 |
edhill |
1.1 |
&& makedependmodel $dir/$builddir && makedepend=Y \ |
1464 |
|
|
&& makemodel $dir/$builddir && make=Y \ |
1465 |
jmc |
1.139 |
&& run_clean $dir/$rundir \ |
1466 |
jmc |
1.140 |
&& linkdata $dir/$rundir $inputdir \ |
1467 |
edhill |
1.12 |
&& runmodel $dir/$rundir && run=Y \ |
1468 |
jmc |
1.99 |
&& results=`testoutput_run $dir $rundir $ref_outp` |
1469 |
edhill |
1.10 |
fi |
1470 |
jmc |
1.139 |
#echo "results='$results'" |
1471 |
jmc |
1.135 |
|
1472 |
edhill |
1.24 |
fres=`formatresults $dir ${genmake:-N} ${makedepend:-N} ${make:-N} ${run:-N} $results` |
1473 |
jmc |
1.139 |
echo 1>&2 |
1474 |
jmc |
1.98 |
echo "$fres" | sed 's/ 99/ --/g' | sed 's/ > />/' | sed 's/ < /</' >> $SUMMARY |
1475 |
jmc |
1.138 |
echo "fresults='$fres'" | sed 's/ 99/ --/g' >> $locDIR"/summary.txt" |
1476 |
edhill |
1.34 |
|
1477 |
|
|
for ex in $extra_runs ; do |
1478 |
jmc |
1.73 |
unset run |
1479 |
jmc |
1.94 |
results=$EMPTY_RESULTS |
1480 |
jmc |
1.106 |
# reference output file |
1481 |
|
|
refExOut=`echo $ref_outp | sed "s/\./.${ex}./g"` |
1482 |
jmc |
1.158 |
# Create an output dir & summary.txt file for each extra run (tdir.ex) |
1483 |
jmc |
1.138 |
locDIR=$DRESULTS"/"$dir"."$ex |
1484 |
|
|
mkdir $locDIR |
1485 |
jmc |
1.158 |
#- report to this experiment local summary file --- |
1486 |
|
|
echo "DATE='$DATE' ; tdir='$dir.$ex'" > $locDIR"/summary.txt" |
1487 |
|
|
#echo "MACH='$MACH'" >> $locDIR"/summary.txt" |
1488 |
|
|
#echo "UNAMEA='$UNAMEA'" >> $locDIR"/summary.txt" |
1489 |
jmc |
1.138 |
CDIR=`pwd`"/$locDIR" |
1490 |
jmc |
1.143 |
test ! -e "$dir/$pfxdir.$ex" && mkdir "$dir/$pfxdir.$ex" |
1491 |
|
|
run_clean $dir/$pfxdir.$ex |
1492 |
|
|
linkdata $dir/$pfxdir.$ex $inputdir.$ex $inputdir |
1493 |
|
|
runmodel $dir/$pfxdir.$ex && run=Y \ |
1494 |
|
|
&& results=`testoutput_run $dir $pfxdir.$ex $refExOut` |
1495 |
edhill |
1.34 |
fres=`formatresults $dir ${genmake:-N} ${makedepend:-N} ${make:-N} ${run:-N} $results` |
1496 |
|
|
fres="$fres.$ex" |
1497 |
jmc |
1.139 |
echo 1>&2 |
1498 |
jmc |
1.100 |
echo "$fres" | sed 's/ 99/ --/g' | sed 's/ > />/' | sed 's/ < /</' >> $SUMMARY |
1499 |
jmc |
1.138 |
echo "fresults='$fres'" | sed 's/ 99/ --/g' >> $locDIR"/summary.txt" |
1500 |
jmc |
1.156 |
if test "x$POSTCLEAN" = x2 ; then |
1501 |
jmc |
1.143 |
run_clean $dir/$pfxdir.$ex |
1502 |
jmc |
1.83 |
fi |
1503 |
edhill |
1.34 |
done |
1504 |
edhill |
1.68 |
|
1505 |
jmc |
1.139 |
if test -f $DRESULTS"/"genmake_state ; then : ; else |
1506 |
jmc |
1.137 |
if test -f $dir/$builddir/Makefile ; then |
1507 |
|
|
mkOpt=`grep '^# OPTFILE=' $dir/$builddir/Makefile 2>/dev/null | head -1 | sed 's/^# //'` |
1508 |
|
|
echo "from '$dir/$builddir/Makefile', extract:" > $DRESULTS/genmake_state |
1509 |
|
|
sed -n '/^# executed by:/,+1 p' $dir/$builddir/Makefile >> $DRESULTS/genmake_state |
1510 |
jmc |
1.151 |
echo " $mkOpt" >> $DRESULTS/genmake_state |
1511 |
jmc |
1.152 |
if test "x$OPTFILE" = xNONE ; then |
1512 |
|
|
eval $mkOpt |
1513 |
|
|
sed "/^No \"OPTFILE\" was specified ; genmake2/a\ OPTFILE=${OPTFILE}"\ |
1514 |
|
|
$SUMMARY > tr_0.tmp_log |
1515 |
|
|
RETVAL=$? |
1516 |
|
|
if test "x$RETVAL" = x0 ; then rm -f $SUMMARY |
1517 |
|
|
cp tr_0.tmp_log $SUMMARY |
1518 |
|
|
else rm -f tr_0.tmp_log |
1519 |
|
|
fi |
1520 |
|
|
fi |
1521 |
jmc |
1.150 |
gmkLog=$dir/$builddir/genmake.log |
1522 |
|
|
grep '^Get compiler version using:' $gmkLog > /dev/null 2>&1 |
1523 |
|
|
RETVAL=$? |
1524 |
|
|
if test "x$RETVAL" = x0 ; then |
1525 |
|
|
echo "from '$gmkLog', extract compiler version:" >> $DRESULTS/genmake_state |
1526 |
jmc |
1.151 |
sed -n '/Get compiler version/,/<-- compiler version/p' $gmkLog \ |
1527 |
jmc |
1.152 |
| grep -v '^... compiler version ' > tr_1.tmp_log |
1528 |
|
|
sed -n '1,/^$/p' tr_1.tmp_log | sed '/^$/d' | sed 's/^./ &/' \ |
1529 |
jmc |
1.151 |
>> $DRESULTS/genmake_state |
1530 |
jmc |
1.152 |
rm -f tr_1.tmp_log |
1531 |
jmc |
1.150 |
fi |
1532 |
jmc |
1.137 |
fi |
1533 |
|
|
fi |
1534 |
jmc |
1.83 |
#postclean $dir/$builddir |
1535 |
jmc |
1.156 |
if test "x$POSTCLEAN" = x2 ; then |
1536 |
jmc |
1.83 |
makeclean $dir/$builddir \ |
1537 |
|
|
&& run_clean $dir/$rundir |
1538 |
|
|
fi |
1539 |
jmc |
1.156 |
if test "x$MPI" != x0 -a "x$MPI_MFILE" != x ; then rm -f $LOC_MFILE ; fi |
1540 |
jmc |
1.135 |
|
1541 |
edhill |
1.10 |
echo "-------------------------------------------------------------------------------" |
1542 |
jmc |
1.135 |
|
1543 |
edhill |
1.1 |
done |
1544 |
|
|
|
1545 |
edhill |
1.34 |
printf "Start time: " >> $SUMMARY |
1546 |
jmc |
1.114 |
echo "$start_date" >> $SUMMARY |
1547 |
edhill |
1.34 |
printf "End time: " >> $SUMMARY |
1548 |
edhill |
1.13 |
date >> $SUMMARY |
1549 |
edhill |
1.20 |
|
1550 |
|
|
# If addresses were supplied and mpack built successfully, then try |
1551 |
|
|
# to send email using mpack. |
1552 |
|
|
if test "x$ADDRESSES" = xNONE -o "x$ADDRESSES" = x ; then |
1553 |
|
|
echo "No results email was sent." |
1554 |
|
|
else |
1555 |
|
|
if test "x$HAVE_MPACK" = xt ; then |
1556 |
|
|
tar -cf $DRESULTS".tar" $DRESULTS > /dev/null 2>&1 \ |
1557 |
|
|
&& gzip $DRESULTS".tar" \ |
1558 |
edhill |
1.44 |
&& $MPACK -s MITgcm-test -m 3555000 $DRESULTS".tar.gz" $ADDRESSES |
1559 |
edhill |
1.20 |
RETVAL=$? |
1560 |
|
|
if test "x$RETVAL" != x0 ; then |
1561 |
|
|
echo |
1562 |
|
|
echo "Warning: The tar, gzip, & mpack step failed. Please send email" |
1563 |
|
|
echo " to <MITgcm-support@mitgcm.org> for help. You may copy the " |
1564 |
|
|
echo " summary of results from the directory \"$DRESULTS\"." |
1565 |
|
|
echo |
1566 |
|
|
else |
1567 |
|
|
echo |
1568 |
|
|
echo "An email containing results was sent to the following addresses:" |
1569 |
|
|
echo " \"$ADDRESSES\"" |
1570 |
|
|
echo |
1571 |
jmc |
1.129 |
test -f $DRESULTS".tar" && rm -f $DRESULTS".tar" |
1572 |
|
|
test -f $DRESULTS".tar.gz" && rm -f $DRESULTS".tar.gz" |
1573 |
edhill |
1.20 |
fi |
1574 |
|
|
fi |
1575 |
|
|
fi |
1576 |
edhill |
1.13 |
|
1577 |
jmc |
1.133 |
if test "x$QUICK" = xf -a "x$NORUN" = xf ; then |
1578 |
|
|
rm -f tr_cmpnum.c tr_cmpnum |
1579 |
|
|
fi |
1580 |
edhill |
1.1 |
|
1581 |
edhill |
1.12 |
if test "x$CLEANUP" != xt ; then |
1582 |
jmc |
1.102 |
cat $SUMMARY | sed 's/ \. \. \. \. \. \. \. \. \. \. \. \. //' |
1583 |
edhill |
1.25 |
if test -e tr_out.txt ; then |
1584 |
|
|
mv tr_out.txt tr_out.txt.old |
1585 |
edhill |
1.14 |
fi |
1586 |
jmc |
1.103 |
cat $SUMMARY | sed '/^[YN] [YN] [YN] [YN]/ s/ \. //g' > tr_out.txt |
1587 |
edhill |
1.12 |
fi |
1588 |
edhill |
1.1 |
|
1589 |
edhill |
1.40 |
if test "x$DELDIR" = xt ; then |
1590 |
|
|
rm -rf $DRESULTS |
1591 |
|
|
fi |
1592 |
|
|
|