/[MITgcm]/MITgcm/verification/testreport
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Revision 1.104 - (hide annotations) (download)
Tue Oct 2 14:24:42 2007 UTC (12 years, 7 months ago) by jmc
Branch: MAIN
Changes since 1.103: +2 -7 lines
forgot to remove this testing of results_ad/output_adm.txt

1 edhill 1.19 #! /usr/bin/env bash
2 edhill 1.1 #
3 jmc 1.104 # $Header: /u/gcmpack/MITgcm/verification/testreport,v 1.103 2007/09/21 19:23:33 jmc Exp $
4 edhill 1.12 # $Name: $
5 edhill 1.1 #
6    
7     usage()
8     {
9     echo
10     echo "Usage: $0 [OPTIONS]"
11     echo
12     echo "where possible OPTIONS are:"
13     echo " (-help|-h) print usage"
14 jmc 1.83 echo " (-mth) run multi threaded (using eedata.mth)"
15     echo " (-mpi) compile and run using MPI"
16 edhill 1.10 echo " (-ieee|-noieee) if possible, use IEEE compiler flags"
17 edhill 1.41 echo " (DEF=\"-ieee\")"
18 jmc 1.89 echo " (-of=|-optfile=)STRING list of optfiles to use"
19 edhill 1.20 echo " (-a|-addr) STRING list of email recipients"
20 edhill 1.6 echo " (DEF=\"edhill@mitgcm.org\")"
21 jmc 1.84 echo " (-t|-tdir) STRING list of group and/or exp. dirs to test"
22     echo " (recognized groups: basic, tutorials)"
23     echo " (DEF=\"\" which test all)"
24 jmc 1.89 echo " (-skd|-skipdir) STRING list of exp. dirs to skip"
25     echo " (DEF=\"\" which test all)"
26 edhill 1.20 echo " (-b|-bash) STRING preferred location of a \"bash\" or"
27     echo " Bourne-compatible \"sh\" shell"
28     echo " (DEF=\"\" for \"bash\")"
29 edhill 1.24 echo " (-adm|-ad) perform an adjoint run"
30 edhill 1.20 echo " (-command) STRING command to run"
31 edhill 1.6 echo " (DEF=\"make output.txt\")"
32 edhill 1.20 echo " (-m|-make) STRING command to use for \"make\""
33 edhill 1.8 echo " (DEF=\"make\")"
34 jmc 1.70 echo " (-odir) STRING used to build output directory name"
35     echo " (DEF=\"hostname\")"
36 jmc 1.89 echo " (-ptr|-ptracers) STRING specify which ptracers to test"
37 edhill 1.50 echo " (DEF=\"1 2 3 4 5\")"
38 jmc 1.92 echo " (-match) NUMBER Matching Criteria (number of digits)"
39     echo " (DEF=\"12\")"
40 edhill 1.43 echo " (-j) JOBS use \"make -j JOBS\" for parallel builds"
41 edhill 1.10 echo " (-clean) *ONLY* run \"make CLEAN\""
42 ce107 1.90 echo " (-quick|-q) same as \"-nogenmake -noclean -nodepend\""
43     echo " (-nogenmake|-ng) skip the genmake stage"
44     echo " (-noclean|-nc) skip the \"make clean\" stage"
45     echo " (-nodepend|-nd) skip the \"make depend\" stage"
46     echo " (-deldir|-dd) on success, delete the output directory"
47     echo " (-ts) provide timing information per timestep"
48     echo " (-papis) provide MFlop/s per timestep using PAPI"
49     echo " (-pcls) provide MFlop/s per timestep using PCL"
50 edhill 1.6 echo
51 edhill 1.50 echo "and where STRING can be a whitespace-delimited list"
52 edhill 1.6 echo "such as:"
53 edhill 1.50 echo
54 edhill 1.6 echo " -t 'exp0 exp2 exp3' "
55     echo " -addr='abc@123.com testing@home.org'"
56 edhill 1.1 echo
57 edhill 1.50 echo "provided that the expression is properly quoted within the current"
58     echo "shell (note the use of single quotes to protect white space)."
59     echo
60 edhill 1.1 exit 1
61     }
62    
63     # build the mpack utility
64     build_mpack()
65     {
66 edhill 1.34 printf "building the mpack utility... "
67 edhill 1.1 if test ! -x "$MPACKDIR/mpack" ; then
68     if test ! -d $MPACKDIR ; then
69 edhill 1.20 echo
70 edhill 1.1 echo "Error: can't find \"$MPACKDIR\""
71     echo " are you sure this program is being run in the correct "
72     echo " (that is, \"MITGCM_ROOT\verification\") directory?"
73 edhill 1.20 echo
74     HAVE_MPACK=f
75 edhill 1.1 fi
76 edhill 1.34 printf "building mpack... "
77 edhill 1.26 if test "x$CC" = x ; then
78     export CC=cc
79     fi
80 edhill 1.25 ( cd $MPACKDIR && ./configure && $MAKE ) > tr_build_mpack.out 2>&1
81 edhill 1.1 RETVAL=$?
82     if test "x$RETVAL" != x0 ; then
83     echo
84     echo "Error building the mpack tools at: $MPACK_DIR"
85 edhill 1.20 echo
86     HAVE_MPACK=f
87     else
88 edhill 1.25 rm -f tr_build_mpack.out
89 edhill 1.20 HAVE_MPACK=t
90 edhill 1.1 fi
91 edhill 1.20 else
92     HAVE_MPACK=t
93 edhill 1.1 fi
94     echo "OK"
95     }
96    
97 jmc 1.93 testoutput_var()
98 edhill 1.1 {
99 jmc 1.99 # testoutput_var dir s1 label subdir reference_output
100 edhill 1.1 #
101 jmc 1.93 # compares 1 variable output selected from file $dir/$subdir/$OUTPUTFILE
102 jmc 1.99 # with same output from reference file $dir/results/$reference_output
103 jmc 1.93 # using search strings s1 and text label
104 edhill 1.1
105     if [ $debug -gt 0 ]; then
106 jmc 1.93 echo testoutput_var: grep "$2" $1/$4/$OUTPUTFILE 1>&2
107 edhill 1.1 fi
108 jmc 1.87 if [ -r $1/$4/$OUTPUTFILE ]; then
109     grep "$2" $1/$4/$OUTPUTFILE | sed 's/.*=//' | cat -n > tmp1.txt
110 jmc 1.67 lncntA=`wc -l tmp1.txt | awk '{print $1}' `
111 jmc 1.100 if [ $lncntA -lt 2 ]; then
112 edhill 1.1 if [ $verbose -gt 0 ]; then
113     echo Not enough lines of output when searching for "$2" 1>&2
114     fi
115     return 99
116     fi
117     else
118 jmc 1.93 echo testoutput_var: $OUTPUTFILE from model run was not readable 1>&2
119 edhill 1.1 return 99
120     fi
121     if [ $debug -gt 0 ]; then
122 jmc 1.99 echo testoutput_var: grep "$2" $1/results/$5 1>&2
123 edhill 1.1 fi
124 jmc 1.99 grep "$2" $1/results/$5 | sed 's/.*=//' | cat -n > tmp2.txt
125 jmc 1.67 lncntB=`wc -l tmp2.txt | awk '{print $1}' `
126 jmc 1.100 if [ $lncntB -lt 2 ]; then
127 edhill 1.1 if [ $verbose -gt 0 ]; then
128     echo Not enough lines of output when searching for "$2" 1>&2
129     fi
130     return 99
131     fi
132 jmc 1.67 if [ $lncntA -ne $lncntB ]; then
133     if [ $verbose -gt 0 ]; then
134     echo Not same Nb of lines when searching for "$2" ":" $lncntA $lncntB 1>&2
135     fi
136     return 99
137     fi
138 edhill 1.72 has_nan=`cat tmp1.txt | grep -i nan | wc -l`
139     if [ $has_nan -gt 0 ] ; then
140 jmc 1.93 echo testoutput_var: $OUTPUTFILE contains $has_nan NaN values 1>&2
141 edhill 1.72 return 99
142     fi
143     has_inf=`cat tmp1.txt | grep -i inf | wc -l`
144     if [ $has_inf -gt 0 ] ; then
145 jmc 1.93 echo testoutput_var: $OUTPUTFILE contains $has_inf Inf values 1>&2
146 jmc 1.71 return 99
147     fi
148 edhill 1.1 if [ $debug -gt 0 ]; then
149 jmc 1.93 echo testoutput_var: join tmp1.txt tmp2.txt 1>&2
150 edhill 1.1 fi
151     join tmp1.txt tmp2.txt | awk '{print $1 " " $2 " " $3}' > tmp3.txt
152     if [ $debug -gt 0 ]; then
153 jmc 1.93 echo testoutput_var: compare_lines 1>&2
154 edhill 1.1 fi
155 edhill 1.22 if [ $verbose -gt 1 ]; then
156     cat tmp3.txt 1>&2
157     fi
158     echo "-1" >> tmp3.txt
159 edhill 1.23 # On the SGI O3K (*not* the O2K), "cat -n" inserts a ":" after the line number
160     cat tmp3.txt | sed -e 's|:||g' > tmp4.txt
161 jmc 1.91 digits_of_similarity=`./tr_cmpnum < tmp4.txt`
162 edhill 1.1 if [ $digits_of_similarity -eq 99 ]; then
163     if [ $verbose -gt 0 ]; then
164 jmc 1.99 echo testoutput_var: No comparison was available for \"$3\" 1>&2
165 edhill 1.1 fi
166     digits_of_similarity=99
167     else
168     if [ $verbose -gt 0 ]; then
169 jmc 1.99 echo There were $digits_of_similarity decimal places of similarity for \"$3\" 1>&2
170 edhill 1.1 fi
171     fi
172 edhill 1.23 rm -f tmp1.txt tmp2.txt tmp3.txt tmp4.txt
173 edhill 1.1
174     return $digits_of_similarity
175     }
176    
177     dashnum()
178     {
179     # dashnum n1 n2 n3 ...
180     #
181     # print numbers using %3i format or "--" if number = 99
182    
183     for num in $@ ; do
184     if [ $num = 99 ]; then
185     printf ' --'
186     else
187     printf '%3i' $num
188     fi
189     done
190     }
191    
192 edhill 1.49 check_for_add_mon_output()
193     {
194     # Check for additional types of monitor output
195     if test "x$1" = x ; then
196     return
197     fi
198    
199 edhill 1.50 for ii in $PTRACERS_NUM ; do
200     eval "HAVE_PTR0"$ii"=f"
201     done
202    
203 edhill 1.49 ptr_add="trcstat_ptracerXX_min trcstat_ptracerXX_max"
204     ptr_add="$ptr_add trcstat_ptracerXX_mean trcstat_ptracerXX_sd"
205 edhill 1.50 for ii in $PTRACERS_NUM ; do
206 edhill 1.49 for jj in $ptr_add ; do
207     name=`eval "echo $jj | sed -e 's|XX|0"$ii"|g'"`
208     tst=`grep $name $1 | wc -l | awk '{print $1}'`
209     if test ! "x$tst" = x0 ; then
210     eval "HAVE_PTR0"$ii"=t"
211     fi
212     done
213     # eval 'echo "HAVE_PTR0'$ii' = $HAVE_PTR0'$ii'"'
214     done
215     }
216    
217 jmc 1.93 testoutput_run()
218 edhill 1.1 {
219 jmc 1.99 # testoutput_run directory subdir reference_output
220 edhill 1.1 #
221 jmc 1.93 # test output from 1 run in "directory"
222 jmc 1.103 # --> same processing for adjoint & forward test
223 jmc 1.94 # default list of output variables to be checked:
224     # 1rst : main variable used to decide if it pass or FAIL
225     # others : number of matching digits to be printed in summary.txt
226     listChk=$DEF_CHECK_LIST
227     # load experiment-specific list from file "tr_checklist" (if it exist)
228     if test -r $1/$2/tr_checklist ; then listChk=`cat $1/$2/tr_checklist` ; fi
229     sVar=`echo $listChk | awk '{print $1}'`
230     # remove 1rst var and expand the list: + => min max mean s.d
231 jmc 1.97 listVar=`echo $listChk | sed 's/ [a-zA-Z0-9]*+/&mn &mx &av &sd/g' \
232     | sed 's/+//g' | sed "s/^$sVar//"`
233 jmc 1.94 if [ $debug -gt 0 ]; then echo "testoutput_run: listVar(I)='$listVar'" 1>&2 ; fi
234     for ii in 1 2 3 4 5 6 7 8 9 ; do
235     tst=`eval 'echo "$HAVE_PTR0'$ii'"'`
236     #echo "-- ptr test=" $tst "number of var=" `echo $listVar | awk '{print NF}'` 1>&2
237     if test "x$tst" != xt ; then listVar=`echo "$listVar" | sed "s/ pt$ii..//g"` ; fi
238     done
239     tst=`echo $sVar $listVar | awk '{ for(i=2;i<=NF;i++){t+=($i==$1)}; print t }'`
240     if test $tst != 1 ; then
241     if test $tst = 0 ; then echo "==> WARNING: selected var >$sVar< not found" 1>&2
242     else echo "==> WARNING: found selected var >$sVar< $tst times" 1>&2 ; fi
243     echo "==> WARNING: in checked list:" $listVar 1>&2
244     #- put it back once:
245     listVar=" $sVar "`echo "$listVar " | sed "s/ $sVar / /g"`
246     fi
247     if [ $debug -gt 0 ]; then echo "testoutput_run: listVar(M)='$listVar'" 1>&2 ; fi
248     echo "listVar='$listVar'" > $CDIR"/summary.txt"
249     allargs=""
250     for xx in $listVar
251     do
252     case $xx in
253     'PS') if [ $debug -gt 0 ]
254     then echo testoutput_run: testoutput_var $1 cg2d_init_res 1>&2 ; fi
255 jmc 1.99 testoutput_var $1 "cg2d_init_res" "Press. Solver (cg2d)" $2 $3; yy=$?
256 jmc 1.94 if [ $debug -gt 0 ] ; then echo testoutput_run: cg2dres=$yy 1>&2 ; fi ;;
257 jmc 1.101 'Cost') testoutput_var $1 "ADM precision_derivative_cost" "ADM Cost" $2 $3; yy=$? ;;
258     'Grad') testoutput_var $1 "ADM precision_derivative_grad" "ADM Grad" $2 $3; yy=$? ;;
259 jmc 1.99 'Tmn') testoutput_var $1 "dynstat_theta_min" "Theta minimum" $2 $3; yy=$? ;;
260     'Tmx') testoutput_var $1 "dynstat_theta_max" "Theta maximum" $2 $3; yy=$? ;;
261     'Tav') testoutput_var $1 "dynstat_theta_mean" "Theta mean" $2 $3; yy=$? ;;
262     'Tsd') testoutput_var $1 "dynstat_theta_sd" "Theta Std.Dev" $2 $3; yy=$? ;;
263     'Smn') testoutput_var $1 "dynstat_salt_min" "Salt minimum" $2 $3; yy=$? ;;
264     'Smx') testoutput_var $1 "dynstat_salt_max" "Salt maximum" $2 $3; yy=$? ;;
265     'Sav') testoutput_var $1 "dynstat_salt_mean" "Salt mean" $2 $3; yy=$? ;;
266     'Ssd') testoutput_var $1 "dynstat_salt_sd" "Salt Std.Dev" $2 $3; yy=$? ;;
267 jmc 1.94 'Umn') testoutput_var $1 "dynstat_uvel_min" "U minimum" $2 $3; yy=$? ;;
268     'Umx') testoutput_var $1 "dynstat_uvel_max" "U maximum" $2 $3; yy=$? ;;
269     'Uav') testoutput_var $1 "dynstat_uvel_mean" "U mean" $2 $3; yy=$? ;;
270 jmc 1.99 'Usd') testoutput_var $1 "dynstat_uvel_sd" "U Std.Dev" $2 $3; yy=$? ;;
271 jmc 1.94 'Vmn') testoutput_var $1 "dynstat_vvel_min" "V minimum" $2 $3; yy=$? ;;
272     'Vmx') testoutput_var $1 "dynstat_vvel_max" "V maximum" $2 $3; yy=$? ;;
273     'Vav') testoutput_var $1 "dynstat_vvel_mean" "V mean" $2 $3; yy=$? ;;
274 jmc 1.99 'Vsd') testoutput_var $1 "dynstat_vvel_sd" "V Std.Dev" $2 $3; yy=$? ;;
275 jmc 1.94 'pt1mn'|'pt2mn'|'pt3mn'|'pt4mn'|'pt5mn') ii=`echo $xx | sed 's/pt//' | sed 's/..$//'`
276     testoutput_var $1 "trcstat_ptracer0"$ii"_min" "p0"$ii"_min" $2 $3; yy=$? ;;
277     'pt1mx'|'pt2mx'|'pt3mx'|'pt4mx'|'pt5mx') ii=`echo $xx | sed 's/pt//' | sed 's/..$//'`
278     testoutput_var $1 "trcstat_ptracer0"$ii"_max" "p0"$ii"_max" $2 $3; yy=$? ;;
279     'pt1av'|'pt2av'|'pt3av'|'pt4av'|'pt5av') ii=`echo $xx | sed 's/pt//' | sed 's/..$//'`
280     testoutput_var $1 "trcstat_ptracer0"$ii"_mean" "p0"$ii"_mean" $2 $3; yy=$? ;;
281     'pt1sd'|'pt2sd'|'pt3sd'|'pt4sd'|'pt5sd') ii=`echo $xx | sed 's/pt//' | sed 's/..$//'`
282 jmc 1.99 testoutput_var $1 "trcstat_ptracer0"$ii"_sd" "p0"$ii"_StDv" $2 $3; yy=$? ;;
283 jmc 1.101 'Qntmn') testoutput_var $1 "extforcing_qnet_min" "Qnet minimum" $2 $3; yy=$? ;;
284     'Qntmx') testoutput_var $1 "extforcing_qnet_max" "Qnet maximum" $2 $3; yy=$? ;;
285     'Qntav') testoutput_var $1 "extforcing_qnet_mean" "Qnet mean" $2 $3; yy=$? ;;
286     'Qntsd') testoutput_var $1 "extforcing_qnet_sd" "Qnet Std.Dev" $2 $3; yy=$? ;;
287     'aSImn') testoutput_var $1 "seaice_area_min" "SIce Area min" $2 $3; yy=$? ;;
288     'aSImx') testoutput_var $1 "seaice_area_max" "SIce Area max" $2 $3; yy=$? ;;
289     'aSIav') testoutput_var $1 "seaice_area_mean" "SIce Area mean" $2 $3; yy=$? ;;
290     'aSIsd') testoutput_var $1 "seaice_area_sd" "SIce Area StDv" $2 $3; yy=$? ;;
291     'hSImn') testoutput_var $1 "seaice_heff_min" "SIce Heff min" $2 $3; yy=$? ;;
292     'hSImx') testoutput_var $1 "seaice_heff_max" "SIce Hell max" $2 $3; yy=$? ;;
293     'hSIav') testoutput_var $1 "seaice_heff_mean" "SIce Hell mean" $2 $3; yy=$? ;;
294     'hSIsd') testoutput_var $1 "seaice_heff_sd" "SIce Hell StDv" $2 $3; yy=$? ;;
295     'AthSiG') testoutput_var $1 "thSI_Ice_Area_G" "thSIc Area Global" $2 $3; yy=$? ;;
296     'AthSiS') testoutput_var $1 "thSI_Ice_Area_S" "thSIc Area South" $2 $3; yy=$? ;;
297     'AthSiN') testoutput_var $1 "thSI_Ice_Area_N" "thSIc Area North" $2 $3; yy=$? ;;
298     'HthSiG') testoutput_var $1 "thSI_IceH_ave_G" "thSIc H Global" $2 $3; yy=$? ;;
299     'HthSiS') testoutput_var $1 "thSI_IceH_ave_S" "thSIc H South" $2 $3; yy=$? ;;
300     'HthSiN') testoutput_var $1 "thSI_IceH_ave_N" "thSIc H North" $2 $3; yy=$? ;;
301 jmc 1.94 *) yy=99; echo "WARNING: asking for var=$xx : not recognized !" 1>&2 ;;
302     esac
303     if test $xx = $sVar
304     then allargs="$allargs > $yy <"
305     else allargs="$allargs $yy"
306     fi
307     done
308    
309     nbVar=`echo $listVar | awk '{print NF}'`
310 jmc 1.97 if [ $nbVar -lt $LEN_CHECK_LIST ] ; then
311 jmc 1.94 #-- fill line (up to standard length) with dot:
312 jmc 1.97 adNul=`expr $LEN_CHECK_LIST - $nbVar | awk '{for(i=1;i<=$1;i++){print "."}}'`
313 jmc 1.94 echo $allargs $adNul
314     else
315     echo $allargs
316     fi
317 jmc 1.103 # <-- same processing for adjoint & forward test
318 edhill 1.1 }
319    
320     genmakemodel()
321     {
322     # genmakemodel directory
323 edhill 1.10 if test "x$NOGENMAKE" = xt ; then
324     echo "genmake skipped!"
325     else
326 edhill 1.34 if test "x$BASH" = x ; then
327     GENMAKE2="../../../tools/genmake2"
328     else
329     GENMAKE2="$BASH ../../../tools/genmake2 -bash $BASH"
330     fi
331 edhill 1.10 (
332     cd $1;
333 edhill 1.24 command="$GENMAKE2 -ds -m $MAKE"
334     if test "x$ADM" = x ; then
335     command="$command --mods=../code"
336     else
337     command="$command --mods=../code_ad"
338     fi
339 edhill 1.10 if test "x$OPTFILE" != xNONE ; then
340     command="$command --optfile=$OPTFILE"
341     fi
342     if test "x$IEEE" != x ; then
343     command="$command -ieee"
344     fi
345 edhill 1.66 if test "x$MPI" = xt ; then
346     command="$command -mpi"
347     fi
348 ce107 1.90 if test "x$TS" = xt ; then
349     command="$command -ts"
350     fi
351     if test "x$PAPIS" = xt ; then
352     command="$command -papis"
353     else
354     if test "x$PCLS" = xt ; then
355     command="$command -pcls"
356     fi
357     fi
358 edhill 1.10 printf 'genmake ... ' 1>&2
359     $command > make.log 2>&1
360     RETVAL=$?
361 edhill 1.44 # Reduce the size of the testing emails!
362 edhill 1.47 head -100 Makefile > $CDIR/Makefile_head
363 edhill 1.10 if test "x$RETVAL" != x0 ; then
364     tail make.log
365     echo "genmakemodel: genmake failed" 1>&2
366 edhill 1.21 cp genmake_* make.log $CDIR
367 edhill 1.10 return 1
368     else
369 edhill 1.20 echo "successful" 1>&2
370 edhill 1.1 fi
371 edhill 1.10 )
372     fi
373 edhill 1.1 }
374    
375     makeclean()
376     {
377     # makeclean directory
378 edhill 1.10 if test "x$NOCLEAN" = xt ; then
379 jmc 1.83 echo "make Clean skipped!"
380 edhill 1.10 else
381     (
382     cd $1;
383 jmc 1.87 #if test -e $OUTPUTFILE ; then rm -f $OUTPUTFILE ; fi
384 edhill 1.10 if test -r Makefile ; then
385 jmc 1.83 printf 'clean build-dir: make Clean ... ' 2>&1
386     $MAKE Clean >> make.log 2>&1
387 edhill 1.10 RETVAL=$?
388     if test "x$RETVAL" != x0 ; then
389     tail make.log
390 jmc 1.83 echo "makeclean: \"make Clean\" failed" 1>&2
391 edhill 1.10 cp make.log $CDIR"/make.log"
392     return 1
393     fi
394     fi
395 edhill 1.20 echo successful 1>&2
396 edhill 1.10 exit 0
397     )
398     fi
399     }
400    
401 jmc 1.83 run_clean()
402 edhill 1.68 {
403 jmc 1.83 # run_clean directory
404     if test "x$NOCLEAN" = xt ; then
405     echo "run_clean skipped!"
406     else
407 edhill 1.68 (
408     cd $1;
409 jmc 1.83 printf 'clean run-dir ... ' 2>&1
410     # part of what is done after "make clean" when doing "make CLEAN"
411     find . -name "*.meta" -exec rm {} \;
412     find . -name "*.data" -exec rm {} \;
413     find . -name "fort.*" -exec rm {} \;
414     find . -type l -exec rm {} \;
415     rm -f $EXECUTABLE *.txt STD* *diagnostics.log datetime
416     rm -rf mnc_test_*
417     echo successful 1>&2
418 edhill 1.68 exit 0
419     )
420     fi
421     }
422    
423 edhill 1.10 makedependmodel()
424     {
425     # makedependmodel directory
426     if test "x$NODEPEND" = xt ; then
427     echo "make depend skipped!"
428     else
429     (
430     cd $1;
431     printf 'make depend ... ' 1>&2
432     $MAKE depend >> make.log 2>&1
433 edhill 1.1 RETVAL=$?
434     if test "x$RETVAL" != x0 ; then
435     tail make.log
436 edhill 1.10 echo "makedependmodel: make depend failed" 1>&2
437 edhill 1.1 cp make.log $CDIR"/make.log"
438     return 1
439 edhill 1.10 else
440 edhill 1.20 echo successful 1>&2
441 edhill 1.1 fi
442 edhill 1.10 )
443     fi
444 edhill 1.1 }
445    
446     makemodel()
447     {
448     # makemodel directory
449     (
450     cd $1;
451     if test -r Makefile ; then
452     printf 'make ... ' 1>&2
453 edhill 1.24 if test "x$ADM" = x ; then
454 edhill 1.43 if test "x$JOBS" = x ; then
455     $MAKE >> make.log 2>&1
456     else
457     $MAKE -j $JOBS >> make.log 2>&1
458     fi
459 edhill 1.24 else
460     $MAKE adall >> make.log 2>&1
461     fi
462 edhill 1.1 RETVAL=$?
463     if test "x$RETVAL" != x0 ; then
464     tail make.log
465     echo failed 1>&2
466     cp make.log $CDIR"/make.log"
467     return 1
468     else
469 edhill 1.20 echo successful 1>&2
470 edhill 1.1 fi
471     fi
472     )
473     }
474    
475 edhill 1.27 symlink_mpifiles()
476     {
477     # Put special links so that MPI specific files are used
478     # This MUST be invoked between makeclean and makelinks because
479     # the Makefile will link to non-mpi files by default
480    
481     dir=$1
482     code_dir=$2
483     BUILD_DIR=$dir/$3
484     CODE_DIR=$dir/$code_dir
485 edhill 1.45
486 edhill 1.27 # These are files that should replace their counter-part when using -mpi
487     MPI_FILES=`(cd $CODE_DIR; find . -name "*_mpi")`
488    
489     # Is this an MPI run?
490     if test "x$MPI" = xt ; then
491     # YES: We symbolically link these files to the build
492     # dir so long as there is no real file in place
493     for ii in $MPI_FILES ; do
494     i=`echo $ii | sed 's:^\./::'`
495     name=`echo $i | sed 's:_mpi::' `
496     cmp $CODE_DIR/$i $BUILD_DIR/$name > /dev/null 2>&1
497     RETVAL=$?
498     if test "x$RETVAL" != x0 ; then
499     if ! test -f $BUILD_DIR/$i ; then
500 edhill 1.45 #echo Linking $name to $i
501 edhill 1.27 (cd $BUILD_DIR; ln -sf ../$code_dir/$i $name)
502     fi
503     fi
504     done
505     else
506 edhill 1.45 # NO: We undo any _mpi symbolically linked files
507 edhill 1.27 for ii in $MPI_FILES ; do
508     i=`echo $ii | sed 's:^\./::'`
509     name=`echo $i | sed 's:_mpi::' `
510     if test -L $BUILD_DIR/$name ; then
511 edhill 1.45 cmp $BUILD_DIR/$name "../$code_dir/$name"_mpi > /dev/null 2>&1
512     RETVAL=$?
513     if test "x$RETVAL" = x0 ; then
514     #echo Un-linking $name from $linktarg
515 edhill 1.27 rm -f $BUILD_DIR/$name
516     fi
517     fi
518     done
519     fi
520    
521     }
522    
523 edhill 1.1 linkdata()
524     {
525 jmc 1.83 # linkdata run_dir input_dir_1 input_dir_2 ...
526 edhill 1.1 #
527     # symbolically link data files to run directory
528 jmc 1.83 if test -d $1 ; then
529 edhill 1.12 (
530 jmc 1.83 cd $1 ; shift
531     if test -r "../"$1"/eedata.mth" ; then
532     # found eedata.mth in 1rst input dir and it is readable
533     if test "x$MULTI_THREAD" = "xt" ; then
534     # multi-threaded test: remove symbolic link & link eedata.mth
535     if test -h eedata ; then rm -f eedata ; fi
536     if test ! -r eedata ; then
537     ln -sf "../"$1"/eedata.mth" eedata ;
538     printf 'eedata.mth ' 1>&2
539 edhill 1.24 fi
540 jmc 1.83 else
541     # not multi-threaded test: remove eedata symbolic link
542     if test -h eedata ; then rm -f eedata ; fi
543     fi
544     fi
545     for ldir in $* ; do
546     if test -d "../"$ldir ; then
547     printf 'ldir='${ldir} 1>&2
548     files=`( cd "../"$ldir ; ls -1 | grep -v CVS )`
549     for i in $files ; do
550     if test ! -d "../"$ldir/$i ; then
551     if test ! -r $i ; then
552     printf ' '$i 1>&2
553     ln -sf "../"$ldir"/"$i $i
554     fi
555     fi
556     done
557     if test -x "../"$ldir"/"prepare_run ; then
558     "../"$ldir"/"prepare_run
559 edhill 1.24 fi
560 jmc 1.83 printf ' ; ' 1>&2
561 jmc 1.82 fi
562 jmc 1.83 done
563 edhill 1.12 )
564 edhill 1.1 fi
565     }
566    
567     runmodel()
568     {
569 edhill 1.6 # runmodel directory
570 edhill 1.1 #
571 edhill 1.24 # runs "$COMMAND in "directory"
572 edhill 1.6 # (where "$COMMAND" is relative to "directory")
573 edhill 1.1 (
574     cd $1
575 jmc 1.75 printf 'runmodel in %s ...' $1 1>&2
576 edhill 1.6 # make output.txt
577 edhill 1.38 echo
578 jmc 1.83 if test ! -x $EXECUTABLE -a -x "../"$builddir"/"$EXECUTABLE ; then
579 jmc 1.88 echo " link" $EXECUTABLE "from dir ../"$builddir > run.log_00
580 jmc 1.83 ln -sf "../"$builddir"/"$EXECUTABLE .
581     fi
582     if test ! -x $EXECUTABLE ; then
583 jmc 1.88 rm -f run.log ; touch run.log
584     if test -f run.log_00 ; then cat run.log_00 >> run.log ; fi
585 jmc 1.83 echo " no executable:" $EXECUTABLE >> run.log
586     RETVAL=8
587 jmc 1.88 ENDVAL=-1
588 jmc 1.75 else
589 jmc 1.98 if test ! -f $OUTPUTFILE -o $OUTPUTFILE -ot $EXECUTABLE ; then
590     # output do not exist or is older than executable:
591 jmc 1.88 rm -f run.log ; touch run.log
592     if test -f run.log_00 ; then cat run.log_00 >> run.log ; fi
593 jmc 1.83 ( eval $COMMAND ) >> run.log 2>&1
594     RETVAL=$?
595     else
596     RETVAL=0
597 jmc 1.88 if test -f run.log ; then
598     if test -f run.log_00 ; then cat run.log_00 >> run.log ; fi
599     echo "---------->> $OUTPUTFILE is up to date " >> run.log 2>&1
600     else
601     touch run.log
602     if test -f run.log_00 ; then cat run.log_00 >> run.log ; fi
603     echo "---------->> $OUTPUTFILE is up to date " >> run.log 2>&1
604     echo " no previous run.log: assume NORMAL END" >> run.log 2>&1
605     fi
606 jmc 1.83 fi
607 jmc 1.88 ENDVAL=`cat run.log | grep -v 'ABNORMAL END' | grep -c 'NORMAL END'`
608 jmc 1.75 fi
609 jmc 1.88 rm -f run.log_00
610     #if test "x$RETVAL" = x0 ; then
611     if [ $RETVAL -eq 0 -a $ENDVAL -gt 0 ] ; then
612 jmc 1.46 tail run.log
613 edhill 1.20 echo successful 1>&2
614 edhill 1.44 # === Reduce the size of the testing emails!
615 jmc 1.87 #cp $OUTPUTFILE $CDIR"/"$OUTPUTFILE
616 jmc 1.48 if test -s STDERR.0000 ; then cp STDERR.0000 $CDIR"/STDERR.0000" ; fi
617 edhill 1.6 return 0
618     else
619 edhill 1.20 tail run.log
620 jmc 1.88 echo failed '(run:' $RETVAL ' end:' $ENDVAL ')' 1>&2
621 edhill 1.20 cp run.log $CDIR"/run.log"
622 jmc 1.48 if test -s STDERR.0000 ; then cp STDERR.0000 $CDIR"/STDERR.0000" ; fi
623 edhill 1.6 return 1
624 edhill 1.1 fi
625     )
626     }
627    
628     createcodelet()
629     {
630     # create codelet for comparing model output
631    
632 edhill 1.34 printf "creating the comparison code... "
633 jmc 1.91 cat > tr_cmpnum.c <<EOF
634 edhill 1.22 #include <stdio.h>
635     #include <math.h>
636     int main( int argc, char** argv ) {
637 jmc 1.91 int linnum,cmplin,best,lncnt;
638 edhill 1.52 double a,b,abave,relerr;
639 jmc 1.57 best = -22;
640 adcroft 1.33 lncnt = 0;
641 jmc 1.96 while( 1 & ( (lncnt+=1) < 999 ) ) {
642 edhill 1.22 scanf("%d", &linnum);
643     if (linnum == -1) break;
644     scanf("%lf", &a); scanf("%lf", &b);
645 edhill 1.52 abave = 0.5*(fabs(a)+fabs(b));
646 jmc 1.91 if ( abave == abave ) {
647     if (abave > 0.0) {
648     relerr=fabs(a-b)/abave;
649     if (relerr > 0.0) { cmplin = (int)rint(log10(relerr)); }
650     else { cmplin = -16 ; }
651     best = (best > cmplin) ? best : cmplin; }
652     else { cmplin = -22 ; }
653     /* printf("%d ; %lf ; %lf\n",cmplin,a,b); */
654     }
655     else {
656     /* printf("%lf ; %lf ; %lf\n",abave,a,b); */
657     break; }
658 edhill 1.22 }
659 adcroft 1.33 if (lncnt == 999) best=-29;
660 jmc 1.91 if (linnum != -1) best=-99;
661 edhill 1.22 printf("%d\n", -best);
662     return 0;
663     }
664     EOF
665 jmc 1.91 $CC -o tr_cmpnum tr_cmpnum.c -lm
666 edhill 1.1
667 jmc 1.91 if [ -x ./tr_cmpnum ]; then
668 edhill 1.1 echo "OK"
669     return 0
670     else
671     echo
672 edhill 1.58 echo "ERROR: failed to compile comparison code -- please specify"
673     echo " a C compiler using the CC environment variable."
674 edhill 1.1 exit 1
675     fi
676     }
677    
678     formatresults()
679     {
680     # formatresults expt genmake depend make run results*
681    
682     nm=$1
683     printf '%s %s %s %s' $2 $3 $4 $5
684     shift; shift; shift; shift; shift;
685 jmc 1.94 listPrt=$@
686     listRes=`echo $listPrt | sed 's/>//' | sed 's/<//'`
687     xx=`echo $listPrt | sed 's/.*>//' | sed 's/<.*//' | awk '{print $1}'`
688 jmc 1.97 printf '%3s' $listPrt
689 jmc 1.98 # line below does not work on hp-ux_ia64 : do those substitutions later on
690 jmc 1.95 # printf '%3s' $listPrt | sed 's/ 99/ --/g' | sed 's/ > />/' | sed 's/ < /</'
691 edhill 1.1
692 jmc 1.94 if [ $xx = '..' ]; then
693     printf ' N/O '
694     elif [ $xx = '--' ]; then
695     printf ' N/O '
696     elif [ $xx = 99 ]; then
697 edhill 1.1 printf ' N/O '
698     else
699 jmc 1.94 if [ $xx -ge $MATCH_CRIT ]; then
700 edhill 1.1 printf ' pass'
701     else
702     printf ' FAIL'
703     fi
704     fi
705     printf ' %s' $nm
706     printf '\n'
707    
708     }
709    
710     scandirs()
711     {
712 jmc 1.81 if [ $# -eq 1 ]; then
713     for arg in * ; do
714 jmc 1.99 test -f $arg/$1 && echo $arg
715 jmc 1.81 done
716 edhill 1.1 else
717 jmc 1.81 echo $*
718 edhill 1.1 fi
719     }
720    
721    
722     ###############################################################################
723    
724    
725     # Default properties
726     debug=0
727     verbose=1
728     clean=0
729     expts=''
730 edhill 1.6 # ieee=1
731 edhill 1.10
732 edhill 1.40 IEEE=true
733 edhill 1.10 if test "x$MITGCM_IEEE" != x ; then
734     IEEE=$MITGCM_IEEE
735     fi
736    
737    
738     CLEANUP=f
739     QUICK=f
740     NOGENMAKE=f
741     NOCLEAN=f
742     NODEPEND=f
743 edhill 1.68 POSTCLEAN=f
744 edhill 1.1
745 edhill 1.4 BASH=
746 edhill 1.10 OPTFILE=NONE
747     ADDRESSES=
748 edhill 1.1 TESTDIRS=
749 jmc 1.89 SKIPDIRS=
750 edhill 1.1 MPACKDIR="../tools/mpack-1.6"
751 edhill 1.20 HAVE_MPACK=
752 edhill 1.1 MPACK="$MPACKDIR/mpack"
753 edhill 1.24 COMMAND=
754 edhill 1.59 if test "x$MAKE" = x ; then
755     MAKE=make
756     fi
757     if test "x$CC" = x ; then
758     CC=cc
759     fi
760 edhill 1.43 JOBS=
761 edhill 1.7 MPI=f
762 jmc 1.83 MULTI_THREAD=f
763 jmc 1.70 OUTDIR=
764 edhill 1.40 DELDIR=
765 edhill 1.1
766 edhill 1.24 ADM=
767    
768 edhill 1.49 # Additional monitor types
769 edhill 1.50 PTRACERS_NUM="1 2 3 4 5"
770 edhill 1.49
771 jmc 1.92 MATCH_CRIT=13
772    
773 edhill 1.34 printf "parsing options... "
774 edhill 1.1
775     ac_prev=
776     for ac_option ; do
777    
778     # If the previous option needs an argument, assign it.
779     if test -n "$ac_prev"; then
780     eval "$ac_prev=\$ac_option"
781     ac_prev=
782     continue
783     fi
784    
785     ac_optarg=`expr "x$ac_option" : 'x[^=]*=\(.*\)'`
786    
787     case $ac_option in
788    
789     -help | --help | -h | --h)
790     usage ;;
791    
792 edhill 1.2 -optfile | --optfile | -of | --of)
793 edhill 1.10 ac_prev=OPTFILE ;;
794 edhill 1.2 -optfile=* | --optfile=* | -of=* | --of=*)
795 edhill 1.10 OPTFILE=$ac_optarg ;;
796 edhill 1.1
797     -addr | --addr | -a | --a)
798     ac_prev=ADDRESSES ;;
799     -addr=* | --addr=*)
800     ADDRESSES=$ac_optarg ;;
801    
802     -tdir | --tdir | -t | --t)
803     ac_prev=TESTDIRS ;;
804     -tdir=* | --tdir=*)
805     TESTDIRS=$ac_optarg ;;
806 edhill 1.4
807 jmc 1.89 -skipdir | --skipdir | -skd | --skd)
808     ac_prev=SKIPDIRS ;;
809     -skipdir=* | --skipdir=*)
810     SKIPDIRS=$ac_optarg ;;
811    
812 edhill 1.4 -bash | --bash | -b | --b)
813     ac_prev=BASH ;;
814     -bash=* | --bash=*)
815     BASH=$ac_optarg ;;
816 edhill 1.5
817 edhill 1.6 -command | --command | -c | --c)
818     ac_prev=COMMAND ;;
819     -command=* | --command=*)
820     COMMAND=$ac_optarg ;;
821 edhill 1.8
822     -make | --make | -m | --m)
823     ac_prev=MAKE ;;
824     -make=* | --make=*)
825     MAKE=$ac_optarg ;;
826 edhill 1.1
827 jmc 1.70 -odir | --odir)
828     ac_prev=OUTDIR ;;
829     -odir=* | --odir=*)
830     OUTDIR=$ac_optarg ;;
831    
832 edhill 1.50 -ptracers | --ptracers | -ptr | --ptr)
833     ac_prev=PTRACERS_NUM ;;
834     -ptracers=* | --ptracers=* | -ptr=* | --ptr=*)
835     PTRACERS_NUM=$ac_optarg ;;
836    
837 jmc 1.92 -match | --match ) ac_prev=MATCH_CRIT ;;
838     -match=* | --match=* ) MATCH_CRIT=$ac_optarg ;;
839    
840 edhill 1.43 -j) ac_prev=JOBS ;;
841     -j=*) JOBS=$ac_optarg ;;
842    
843 edhill 1.10 -clean | --clean)
844 jmc 1.69 CLEANUP=t ; DELDIR=t ;;
845 edhill 1.10
846     -quick | --quick | -q | --q)
847     QUICK=t ;;
848     -nogenmake | --nogenmake | -ng | --ng)
849     NOGENMAKE=t ;;
850     -noclean | --noclean | -nc | --nc)
851     NOCLEAN=t ;;
852     -nodepend | --nodepend | -nd | --nd)
853     NODEPEND=t ;;
854    
855 edhill 1.68 -postclean | --postclean | -pc | --pc)
856     POSTCLEAN=t ;;
857    
858 edhill 1.18 -mpi) MPI=t ;;
859 edhill 1.10
860 jmc 1.83 -mth) MULTI_THREAD=t ;;
861    
862 edhill 1.24 -adm | -ad) ADM=t ;;
863    
864 edhill 1.10 -ieee) IEEE=true ;;
865     -noieee) IEEE= ;;
866    
867 edhill 1.1 -verbose) verbose=2 ;;
868     -debug) debug=1 ;;
869     -quiet) verbose=0 ;;
870    
871 edhill 1.40 -deldir | -dd) DELDIR=t ;;
872    
873 ce107 1.90 -ts) TS=t;;
874    
875     -papis) PAPIS=t;;
876    
877     -pcls) PCL=t;;
878    
879 edhill 1.1 -*)
880     echo "Error: unrecognized option: "$ac_option
881     usage
882     ;;
883    
884     *)
885     echo "Error: unrecognized argument: "$ac_option
886     usage
887     ;;
888    
889     esac
890    
891     done
892    
893 edhill 1.10 if test "x$QUICK" = xt ; then
894     NOGENMAKE=t
895     NOCLEAN=t
896     NODEPEND=t
897     fi
898    
899 jmc 1.99 #- setting for forward or ADM testing
900     if test "x$ADM" = xt ; then
901     code_dir=code_ad
902     input_dirs='input_ad input'
903     ref_outp="output_adm.txt"
904     EXECUTABLE="mitgcmuv_ad"
905     else
906     code_dir=code
907     input_dirs='input'
908     ref_outp="output.txt"
909     EXECUTABLE="mitgcmuv"
910     fi
911    
912 edhill 1.1 if test "x$TESTDIRS" = x ; then
913 jmc 1.103 LIST=`scandirs results/$ref_outp`
914 jmc 1.84 else
915     #- expand group of experiments:
916     LIST=" "
917     for xx in $TESTDIRS
918     do
919     case $xx in
920 jmc 1.86 'basic') LIST=${LIST}" aim.5l_cs hs94.128x64x5 ideal_2D_oce"
921     LIST=${LIST}" lab_sea tutorial_baroclinic_gyre"
922     LIST=${LIST}" tutorial_global_oce_latlon tutorial_plume_on_slope"
923 jmc 1.84 ;;
924     'tutorials')
925     LIST=${LIST}" "`ls | grep 'tutorial_'` ;;
926     *) LIST=${LIST}" "$xx ;;
927     esac
928     done
929 jmc 1.89 fi
930     #echo 'LIST='${LIST}'<'
931     #- skip dirs, remove duplicate and non-directory:
932     TESTDIRS=" "
933     count=0
934     for xx in $LIST
935     do
936     yy=`echo $SKIPDIRS | grep -c $xx`
937     if test $yy = 0 ; then
938 jmc 1.84 if test -d $xx ; then
939     yy=`echo $TESTDIRS | grep -c $xx`
940     if test $yy = 0 ; then TESTDIRS=${TESTDIRS}" "$xx ; fi
941 jmc 1.89 else count=1 ;
942     echo ""; echo -n " -- skip \"$xx\" (not a directory !)"
943     fi
944     else
945     if test $count = 1 ; then echo -n ", \"$xx\""
946     else count=1 ; echo "" ; echo -n " skip: \"$xx\""
947 jmc 1.84 fi
948 jmc 1.89 fi
949     done
950     if test $count = 1 ; then echo "" ; echo -n " ... " ; fi
951 jmc 1.84 #echo 'TESTDIRS='${TESTDIRS}'<'
952 edhill 1.1
953 edhill 1.10 if test "x$OPTFILE" = xNONE -a "x$MITGCM_OF" != x ; then
954     OPTFILE=$MITGCM_OF
955     fi
956    
957 jmc 1.99 OUTPUTFILE=$ref_outp
958 jmc 1.87 if test "x$COMMAND" = x ; then
959 jmc 1.77 COMMAND="./$EXECUTABLE > $OUTPUTFILE"
960 edhill 1.24 fi
961 jmc 1.87 if test "x$MPI" = xt ; then
962     OUTPUTFILE="STDOUT.0000"
963 edhill 1.24 fi
964    
965 jmc 1.76 echo "OK (COMMAND= $COMMAND )"
966 edhill 1.1
967 jmc 1.94 # set the Default List of output variables to be checked:
968     # (use default or load experiment-specific list from file "tr_checklist")
969     # content : 1rst = main variable used to decide if it pass or FAIL
970     # others = number of matching digits to be printed in summary.txt
971 jmc 1.99 if test "x$ADM" = x ; then
972 jmc 1.94 DEF_CHECK_LIST='PS PS T+ S+ U+ V+ pt1+ pt2+ pt3+ pt4+ pt5+'
973     EMPTY_RESULTS='.. .. .. .. .. .. .. .. .. .. .. .. .. .. .. .. ..'
974 jmc 1.97 LEN_CHECK_LIST=`echo $DEF_CHECK_LIST | sed 's/ [a-zA-Z0-9]*+/&mn &mx &av &sd/g' | awk '{print NF-1}'`
975 jmc 1.94 ii=`echo $EMPTY_RESULTS | awk '{print NF}'`
976 jmc 1.97 EMPTY_RESULTS=$EMPTY_RESULTS`expr $LEN_CHECK_LIST - $ii | awk 'BEGIN{FS=":"}{for(i=1;i<=$1;i++){printf " ."}}'`
977 jmc 1.99 else
978 jmc 1.103 DEF_CHECK_LIST='Grad Cost Grad'
979 jmc 1.99 EMPTY_RESULTS='.. ..'
980     LEN_CHECK_LIST=`echo $DEF_CHECK_LIST | sed 's/ [a-zA-Z0-9]*+/&mn &mx &av &sd/g' | awk '{print NF-1}'`
981 jmc 1.94 fi
982    
983 edhill 1.1 # create the FORTRAN comparison code
984     createcodelet
985    
986     # build the mpack utility
987 edhill 1.31 if test "x$ADDRESSES" = xNONE -o "x$ADDRESSES" = x ; then
988 edhill 1.32 echo "skipping mpack build"
989     else
990 edhill 1.31 build_mpack
991     fi
992 edhill 1.1
993     # Create a uniquely named directory to store results
994     MACH=`hostname`
995 edhill 1.2 UNAMEA=`uname -a`
996 edhill 1.1 DATE=`date +%Y%m%d`
997 edhill 1.25 BASE="tr_"$MACH"_"$DATE"_"
998 jmc 1.70 if test "x$OUTDIR" != x ; then
999     BASE="tr_"$OUTDIR"_"$DATE"_"
1000     fi
1001 edhill 1.1 DNUM=0
1002     DRESULTS="$BASE$DNUM"
1003     while test -e $DRESULTS ; do
1004     DNUM=$(( $DNUM + 1 ))
1005     DRESULTS="$BASE$DNUM"
1006     done
1007     mkdir $DRESULTS
1008     RETVAL=$?
1009     if test "x$RETVAL" != x0 ; then
1010 edhill 1.20 echo "ERROR: Can't create results directory \"./$DRESULTS\""
1011 edhill 1.1 exit 1
1012     fi
1013     SUMMARY="$DRESULTS/summary.txt"
1014 edhill 1.34 printf "Start time: " >> $SUMMARY
1015 edhill 1.16 start_date=`date`
1016 edhill 1.17 echo $start_date > $SUMMARY
1017 edhill 1.1
1018 edhill 1.11 of_path=
1019 edhill 1.10 if test "x$OPTFILE" != xNONE ; then
1020     if test -r $OPTFILE ; then
1021 edhill 1.11 # get the path
1022     path=${OPTFILE%/*}
1023     if test "x$path" = x ; then
1024     of_path=`pwd`
1025     else
1026     of_path=`( cd $path > /dev/null 2>&1 ; pwd )`
1027     fi
1028     file=${OPTFILE##*/}
1029     OPTFILE=$of_path/$file
1030 edhill 1.21 cp $OPTFILE $DRESULTS
1031     echo >> $SUMMARY
1032     echo " OPTFILE=$OPTFILE" >> $SUMMARY
1033 edhill 1.11 else
1034 edhill 1.21 echo | tee $SUMMARY
1035     echo "ERROR: can't read OPTFILE=\"$OPTFILE\"" | tee $SUMMARY
1036     exit 1
1037 edhill 1.10 fi
1038 edhill 1.21 else
1039     echo >> $SUMMARY
1040     echo "No \"OPTFILE\" was explicitly specified by testreport," >> $SUMMARY
1041     echo " so the genmake default will be used." >> $SUMMARY
1042 edhill 1.10 fi
1043     echo
1044     echo >> $SUMMARY
1045 edhill 1.24 if test "x$ADM" = x ; then
1046 jmc 1.92 if [ $MATCH_CRIT -lt 10 ] ;
1047 jmc 1.94 then line_0="default "$MATCH_CRIT ;
1048     else line_0="default "$MATCH_CRIT ; fi
1049     line_0="$line_0 ----T----- ----S----- ----U----- ----V-----"
1050 jmc 1.92 # line_0=" ----T----- ----S----- ----U----- ----V-----"
1051 edhill 1.49 line_1="G D M c m s m s m s m s"
1052     line_2="E p a R g m m e . m m e . m m e . m m e ."
1053     line_3="N n k u 2 i a a d i a a d i a a d i a a d"
1054     line_4="2 d e n d n x n . n x n . n x n . n x n ."
1055 edhill 1.50 for ii in $PTRACERS_NUM ; do
1056 edhill 1.49 # tst=`eval 'echo $HAVE_PTR0'$ii`
1057     # if test "x$tst" = xt ; then
1058     line_0="$line_0 --PTR 0"$ii"--"
1059     line_1="$line_1 m s"
1060     line_2="$line_2 m m e ."
1061     line_3="$line_3 i a a d"
1062     line_4="$line_4 n x n ."
1063     # fi
1064     done
1065     echo "$line_0" | tee -a $SUMMARY
1066     echo "$line_1" | tee -a $SUMMARY
1067     echo "$line_2" | tee -a $SUMMARY
1068     echo "$line_3" | tee -a $SUMMARY
1069     echo "$line_4" | tee -a $SUMMARY
1070     echo " " | tee -a $SUMMARY
1071 edhill 1.24 else
1072     echo "ADJOINT=true" >> $SUMMARY
1073     echo >> $SUMMARY
1074 jmc 1.100 if [ $MATCH_CRIT -lt 10 ] ;
1075 jmc 1.103 then line_0="default "$MATCH_CRIT ;
1076     else line_0="default "$MATCH_CRIT ; fi
1077 jmc 1.100 echo "$line_0" | tee -a $SUMMARY
1078 edhill 1.24 cat << EOF | tee -a $SUMMARY
1079     G D M C G
1080     E p a R o r
1081     N n k u s a
1082     2 d e n t d
1083    
1084     EOF
1085     fi
1086 edhill 1.1
1087 edhill 1.10 # ...and each test directory...
1088     for dir in $TESTDIRS ; do
1089    
1090     # Cleanup only!
1091     if test "x$CLEANUP" = xt ; then
1092     if test -r $dir/build/Makefile ; then
1093 jmc 1.83 echo ' ------ clean dir:' $dir/build
1094 edhill 1.10 ( cd $dir/build ; make CLEAN )
1095     fi
1096 jmc 1.83 if test -d $dir/run/CVS ; then
1097     echo ' ------ clean dir:' $dir/run
1098     run_clean $dir/run
1099 edhill 1.10 fi
1100 edhill 1.62 (
1101     cd $dir
1102     rm -rf tr_run.*
1103     )
1104 edhill 1.10 continue
1105 edhill 1.1 fi
1106 edhill 1.3
1107 edhill 1.10 # Verify that the testdir exists and contains previous
1108     # results in the correct location--or skip this directory!
1109 jmc 1.104 fout=$dir"/results/"$ref_outp
1110 edhill 1.24 if test ! -r $fout ; then
1111     echo "can't read \"$fout\" -- skipping $dir"
1112 edhill 1.10 continue
1113     fi
1114 edhill 1.53 if test "x$ADM" = x ; then
1115     check_for_add_mon_output $fout
1116     fi
1117 edhill 1.7
1118 edhill 1.49 # Check for additional types of monitor output
1119    
1120 jmc 1.83 builddir="build"
1121     if test ! -d $dir/$builddir ; then mkdir $dir/$builddir ; fi
1122     rundir="run"
1123     if test ! -d $dir/$rundir ; then
1124     rundir=$builddir
1125 edhill 1.10 fi
1126 jmc 1.99 CODE_DIR=$dir/$code_dir
1127 edhill 1.10 BUILD_DIR=$dir/$builddir
1128 edhill 1.28
1129 edhill 1.30 if test ! -r $CODE_DIR"/SIZE.h_mpi" -a "x$MPI" = "xt" ; then
1130 edhill 1.28 echo "can't find \"$CODE_DIR/SIZE.h_mpi\" -- skipping $dir"
1131     continue
1132     fi
1133 jmc 1.83 if test ! -r $dir"/input/eedata.mth" -a "x$MULTI_THREAD" = "xt" ; then
1134     echo "can't find \"$dir/input/eedata.mth\" -- skipping $dir"
1135     continue
1136     fi
1137    
1138     # Check whether there are "extra runs" for this testdir
1139     extra_runs=
1140     if test "x$ADM" = x ; then
1141     ex_run_dirs=`( cd $dir ; echo input.* )`
1142     #echo "ex_run_dirs='$ex_run_dirs'"
1143     for exd in $ex_run_dirs ; do
1144     name=`echo $exd | sed -e 's/input.//g'`
1145 jmc 1.85 outf="$dir/results/output.$name.txt"
1146 jmc 1.83 if test -f $outf -a -r $outf ; then
1147     if test "x$MULTI_THREAD" = "xt" ; then
1148     if test -r $dir"/"$exd"/eedata.mth" ; then
1149     extra_runs="$extra_runs $name"
1150     #else echo $dir"/"$exd"/eedata.mth: not found"
1151     fi
1152     else
1153     extra_runs="$extra_runs $name"
1154     fi
1155     fi
1156     done
1157     fi
1158 edhill 1.28
1159     echo "-------------------------------------------------------------------------------"
1160     echo
1161 jmc 1.83 if test "x$extra_runs" = "x" ; then
1162     echo "Experiment: $dir"
1163     else
1164     echo "Experiment: $dir ; extra_runs=$extra_runs"
1165     fi
1166 edhill 1.28 echo
1167     unset genmake makedepend make run
1168 jmc 1.94 results=$EMPTY_RESULTS
1169 edhill 1.10
1170     # Create an output dir for each OPTFILE/tdir combination
1171 edhill 1.20 rel_CDIR=$DRESULTS"/"$dir
1172     mkdir $rel_CDIR
1173     CDIR=`pwd`"/$rel_CDIR"
1174 edhill 1.10
1175     if test "x$CLEANUP" = xt ; then
1176 jmc 1.83 echo '====>>> this is to check that we never go through this part <<< ==='
1177     makeclean $dir/$builddir \
1178     && run_clean $dir/$rundir
1179 edhill 1.10 else
1180 edhill 1.1 genmakemodel $dir/$builddir && genmake=Y \
1181     && makeclean $dir/$builddir \
1182 jmc 1.83 && run_clean $dir/$rundir \
1183 edhill 1.27 && symlink_mpifiles $dir $code_dir $builddir \
1184 edhill 1.1 && makedependmodel $dir/$builddir && makedepend=Y \
1185     && makemodel $dir/$builddir && make=Y \
1186 jmc 1.83 && linkdata $dir/$rundir $input_dirs \
1187 edhill 1.12 && runmodel $dir/$rundir && run=Y \
1188 jmc 1.99 && results=`testoutput_run $dir $rundir $ref_outp`
1189 edhill 1.10 fi
1190    
1191     echo
1192 jmc 1.103 # --> same processing for adjoint & forward test
1193 edhill 1.24 fres=`formatresults $dir ${genmake:-N} ${makedepend:-N} ${make:-N} ${run:-N} $results`
1194 edhill 1.34 echo
1195 jmc 1.98 echo "$fres" | sed 's/ 99/ --/g' | sed 's/ > />/' | sed 's/ < /</' >> $SUMMARY
1196 jmc 1.100 touch $CDIR"/summary.txt"
1197 jmc 1.97 echo "fresults='$fres'" | sed 's/ 99/ --/g' >> $CDIR"/summary.txt"
1198 edhill 1.34 echo "MACH='$MACH'" >> $CDIR"/summary.txt"
1199     echo "UNAMEA='$UNAMEA'" >> $CDIR"/summary.txt"
1200     echo "DATE='$DATE'" >> $CDIR"/summary.txt"
1201     echo "tdir='$dir'" >> $CDIR"/summary.txt"
1202    
1203     for ex in $extra_runs ; do
1204 jmc 1.73 unset run
1205 jmc 1.94 results=$EMPTY_RESULTS
1206 jmc 1.73 # Create an output dir for each OPTFILE/tdir.ex combination
1207     rel_CDIR=$DRESULTS"/"$dir"."$ex
1208     mkdir $rel_CDIR
1209     CDIR=`pwd`"/$rel_CDIR"
1210 edhill 1.61 test ! -e "$dir/tr_run.$ex" && mkdir "$dir/tr_run.$ex"
1211 jmc 1.83 run_clean $dir/tr_run.$ex
1212     linkdata $dir/tr_run.$ex input.$ex input
1213 jmc 1.42 runmodel $dir/tr_run.$ex && run=Y \
1214 jmc 1.99 && results=`testoutput_run $dir tr_run.$ex "output.${ex}.txt"`
1215 edhill 1.34 fres=`formatresults $dir ${genmake:-N} ${makedepend:-N} ${make:-N} ${run:-N} $results`
1216     fres="$fres.$ex"
1217     echo
1218 jmc 1.100 echo "$fres" | sed 's/ 99/ --/g' | sed 's/ > />/' | sed 's/ < /</' >> $SUMMARY
1219     touch $CDIR"/summary.txt"
1220 jmc 1.97 echo "fresults='$fres'" | sed 's/ 99/ --/g' >> $CDIR"/summary.txt"
1221 edhill 1.34 echo "MACH='$MACH'" >> $CDIR"/summary.txt"
1222     echo "UNAMEA='$UNAMEA'" >> $CDIR"/summary.txt"
1223     echo "DATE='$DATE'" >> $CDIR"/summary.txt"
1224 jmc 1.73 echo "tdir='$dir.$ex'" >> $CDIR"/summary.txt"
1225 jmc 1.83 if test "x$POSTCLEAN" = xt ; then
1226 jmc 1.100 run_clean $dir/tr_run.$ex
1227 jmc 1.83 fi
1228 edhill 1.34 done
1229 jmc 1.103 # <-- same processing for adjoint & forward test
1230 jmc 1.99 if test "x$ADM" = xt ; then
1231 jmc 1.100 grep -A3 'Seconds in section "ALL' $dir/$rundir/$OUTPUTFILE \
1232 jmc 1.77 >> $CDIR"/summary.txt"
1233 edhill 1.24 fi
1234 edhill 1.68
1235 jmc 1.83 #postclean $dir/$builddir
1236     if test "x$POSTCLEAN" = xt ; then
1237     makeclean $dir/$builddir \
1238     && run_clean $dir/$rundir
1239     fi
1240 edhill 1.10
1241     echo "-------------------------------------------------------------------------------"
1242    
1243 edhill 1.1 done
1244    
1245 edhill 1.34 printf "Start time: " >> $SUMMARY
1246 edhill 1.16 echo $start_date >> $SUMMARY
1247 edhill 1.34 printf "End time: " >> $SUMMARY
1248 edhill 1.13 date >> $SUMMARY
1249 edhill 1.20
1250     # If addresses were supplied and mpack built successfully, then try
1251     # to send email using mpack.
1252     if test "x$ADDRESSES" = xNONE -o "x$ADDRESSES" = x ; then
1253     echo "No results email was sent."
1254     else
1255     if test "x$HAVE_MPACK" = xt ; then
1256     tar -cf $DRESULTS".tar" $DRESULTS > /dev/null 2>&1 \
1257     && gzip $DRESULTS".tar" \
1258 edhill 1.44 && $MPACK -s MITgcm-test -m 3555000 $DRESULTS".tar.gz" $ADDRESSES
1259 edhill 1.20 RETVAL=$?
1260     if test "x$RETVAL" != x0 ; then
1261     echo
1262     echo "Warning: The tar, gzip, & mpack step failed. Please send email"
1263     echo " to <MITgcm-support@mitgcm.org> for help. You may copy the "
1264     echo " summary of results from the directory \"$DRESULTS\"."
1265     echo
1266     else
1267     echo
1268     echo "An email containing results was sent to the following addresses:"
1269     echo " \"$ADDRESSES\""
1270     echo
1271     fi
1272     test -f $DRESULTS".tar" && rm -f $DRESULTS".tar"
1273     test -f $DRESULTS".tar.gz" && rm -f $DRESULTS".tar.gz"
1274     fi
1275     fi
1276 edhill 1.13
1277 jmc 1.91 rm -f tr_cmpnum.c tr_cmpnum
1278 edhill 1.1
1279 edhill 1.12 if test "x$CLEANUP" != xt ; then
1280 jmc 1.102 cat $SUMMARY | sed 's/ \. \. \. \. \. \. \. \. \. \. \. \. //'
1281 edhill 1.25 if test -e tr_out.txt ; then
1282     mv tr_out.txt tr_out.txt.old
1283 edhill 1.14 fi
1284 jmc 1.103 cat $SUMMARY | sed '/^[YN] [YN] [YN] [YN]/ s/ \. //g' > tr_out.txt
1285 edhill 1.12 fi
1286 edhill 1.1
1287 edhill 1.40 if test "x$DELDIR" = xt ; then
1288     rm -rf $DRESULTS
1289     fi
1290    

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