/[MITgcm]/MITgcm/verification/natl_box_adjoint/README
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Revision 1.2 - (hide annotations) (download)
Thu Nov 6 22:57:38 2003 UTC (20 years, 7 months ago) by heimbach
Branch: MAIN
CVS Tags: checkpoint52l_pre, checkpoint52e_pre, checkpoint52n_post, checkpoint52j_post, checkpoint52e_post, checkpoint52j_pre, branch-netcdf, checkpoint52l_post, checkpoint52k_post, checkpoint52b_pre, checkpoint52m_post, checkpoint53, checkpoint52, checkpoint52d_post, checkpoint52a_post, checkpoint52b_post, checkpoint52f_post, checkpoint52c_post, ecco_c52_e35, checkpoint52a_pre, checkpoint52i_post, checkpoint52i_pre, checkpoint51u_post, checkpoint52h_pre, checkpoint52f_pre
Branch point for: netcdf-sm0
Changes since 1.1: +527 -0 lines
updating

1 heimbach 1.2 # Example: Subtropical North Atlantic and Labrador Sea Areas
2     # ==========================================================
3     # - forward/adjoint run
4     # - optimization cost function
5     # - The input data is real*8
6    
7     >>>>>>>>>>>>>>>>>>>> DO THESE THINGS FIRST <<<<<<<<<<<<<<<<<<<<
8     mkdir verification/natl_box_adjoint/exe
9     cd verification/natl_box_adjoint/exe
10     ln -s ../build/mitgcmuv_ad .
11     ln -s ../build/mitgcmuv_ftl .
12     >>>>>>>>>>>>>>>>>>>> DO THESE THINGS FIRST <<<<<<<<<<<<<<<<<<<<
13    
14     ####################
15     # Experiment no. 1 #
16     ####################
17     # Use air-sea fluxes as controls (standard case):
18     # perform gradient checks for first four elements of the
19     # heat flux part of the control vector (grdchkvarindex = 3).
20     # - with GMREDI, KPP, and shortwave heating
21     # - 4 timesteps
22    
23     # Compile code in build/:
24     cd ../build
25     ../../../tools/genmake2 -mods=../code
26     make depend
27     make adall
28    
29     # To run:
30     cd ../exe
31     cp ../input/* .
32     ./mitgcmuv_ad >&! output.txt
33     # To verify the results of the gradient check, type:
34     grep grad-res output.txt
35     # A reference output is in:
36     grep grad-res ../results/output.txt_adm
37    
38    
39     ####################
40     # Experiment no. 2 #
41     ####################
42     # Use bulk formulae and atmospheric state controls
43     # (only differences to experiment 1 are in
44     # ECCO_CPPOPTIONS.h and in data.grdchk):
45     # perform gradient checks for first four elements of the
46     # air temperture part of the control vector (grdchkvarindex = 7).
47    
48     # Compile code in build/:
49     cd ../build
50     rm -f *.o *.f *.p rii_files *.flow
51     rm -f *.F *.h *.c Makefile* *.template genmake_*
52     ../../../tools/genmake2 -mods=../code_bulk
53     make depend
54     make adall
55    
56     # To run:
57     cd ../exe
58     cp ../input_bulk/* .
59     cp ../input/PH_*.data .
60     ./mitgcmuv_ad >&! output.txt
61     # To verify the results of the gradient check, type:
62     grep grad-res output.txt
63     # A reference output is in:
64     grep grad-res ../results_bulk/output.txt_adm
65    
66    
67     ####################
68     # Experiment no. 4 #
69     ####################
70     # Same as exp. 2, but with ALLOW_SEAICE defined and useseaice = .true.
71    
72     # Compile code in build/:
73     cd ../build
74     rm -f *.o *.f *.p rii_files *.flow
75     rm -f *.F *.h *.c Makefile* *.template genmake_*
76     ../../../tools/genmake2 -mods=../code_seaice
77     cp ../code_seaice/SEAICE_OPTIONS.h.FLUXES SEAICE_OPTIONS.h
78     make depend
79     make adall
80    
81     # To run:
82     cd ../exe
83     cp ../input_bulk/* .
84     cp ../input_seaice/data.seaice.cgrid data.seaice
85     cp ../input_seaice/data.pkg .
86     cp ../input/PH_*.data .
87     ./mitgcmuv_ad >&! output.txt
88     # To verify the results of the gradient check, type:
89     grep grad-res output.txt
90     # A reference output is in:
91     grep grad-res ../results_seaice/output_exp4.txt_adm
92    
93    
94     ####################
95     # Experiment no. 5 #
96     ####################
97     # Same as exp. 4, but using sea-ice bulk formulae.
98     # This experiment tests pkg/seaice bulk formulae over open water.
99     # No sea-ice is formed anywhere in the domain.
100    
101     # Compile code in build/:
102     cd ../build
103     rm -f *.o *.f *.p rii_files *.flow
104     rm -f *.F *.h *.c Makefile* *.template genmake_*
105     ../../../tools/genmake2 -mods=../code_seaice
106     make depend
107     make adall
108    
109     # To run:
110     cd ../exe
111     cp ../input_bulk/* .
112     cp ../input_seaice/data.seaice.cgrid data.seaice
113     cp ../input_seaice/data.pkg .
114     cp ../input/PH_*.data .
115     ./mitgcmuv_ad >&! output.txt
116     # To verify the results of the gradient check, type:
117     grep grad-res output.txt
118     # A reference output is in:
119     grep grad-res ../results_seaice/output_exp5.txt_adm
120    
121    
122     ####################
123     # Experiment no. 6 #
124     ####################
125     # Same as experiment 5, but in the Labrador Sea rather than in
126     # the North Atlantic subduction region. The cost function is
127     # total ice volume over the 4-hour test period.
128     #
129     # The cost function data files are not used. They contain:
130     # labsea_TP_fields : filled with -9999
131     # labsea_TP_mean : hour 100 ssh (cm) of lab_sea experiment
132     # labsea_ERS_fields : filled with -9999
133     # labsea_SST_fields : 14 * Levitus annual mean SST
134     # labsea_Lev.ptmp : 14 * Levitus annual mean temperature
135     # labsea_Lev.salt : 14 * Levitus annual mean salinity
136     # labsea_ssh.err : filled with -9999
137     # labsea_geoid.err : constant 0.2 with -9999 landmask
138     # labsea_totflux.err : 100 with -9999 landmask
139     # labsea_pme.err : 4e-8 with -9999 landmask
140     # labsea_ustress.err : 3 with -9999 landmask
141     # labsea_vstress.err : 3 with -9999 landmask
142    
143     # To run:
144     cd ../exe
145     cp ../input_seaice/* .
146     cp ../input_bulk/data.grdchk .
147     ./mitgcmuv_ad >&! output.txt
148     # To verify the results of the gradient check, type:
149     grep grad-res output.txt
150     # A reference output is in:
151     grep grad-res ../results_seaice/output_exp6.txt_adm
152    
153    
154     ####################
155     # Experiment no. 7 #
156     ####################
157     # Same as experiment 6, but finite difference gradient check for
158     # air temperature is computed and compared for the complete domain.
159     #
160     # Notes:
161     # variables xx_* contain control vector perturbation
162     # variables adxx_* contain cost function gradient relative to control
163    
164     # To run:
165     cd ../exe
166     cp ../input_seaice/* .
167     ./mitgcmuv_ad >&! output.txt
168     # To verify the results of the gradient check, type:
169     grep grad-res output.txt > grad-res.txt
170     # A reference output is in:
171     grep grad-res ../results_seaice/output_exp6.txt_adm
172     # plot with matlab:
173     cd ../results_seaice
174     matlab
175     lookat_exp8
176    
177    
178     ####################
179     # Experiment no. 8 #
180     ####################
181     >>>>>>>>>> PH: THIS ONE NOT YET UPDATED <<<<<<<<<<
182     # Same as experiment 7, but starting from a checkpoint file.
183    
184     # To run:
185     cd ../../../exe
186     cp ../verification/natl_box_adjoint/input_seaice/* .
187     cp data.001 data
188     ./mitgcmuv >&! output.txt
189     # To verify the results of the gradient check, type:
190     grep "ph-grd 3" output.txt > ph-grd.txt
191     cd ../verification/natl_box_adjoint/results_seaice
192     matlab
193     lookat_exp8
194    
195    
196     ####################
197     # Experiment no. 9 #
198     ####################
199     >>>>>>>>>> PH: THIS ONE NOT YET UPDATED <<<<<<<<<<
200     # Same as experiment 8, but starting from time step 180.
201     # This includes a location (12,8) which experiences a phase
202     # transition from no-ice to sea-ice, and which therefore has
203     # a very large and inaccurate gradient.
204    
205     # To run:
206     cd ../../../exe
207     cp ../verification/natl_box_adjoint/input_seaice/* .
208     cp data.180 data
209     ./mitgcmuv >&! output.txt
210     # To verify the results of the gradient check, type:
211     grep "ph-grd 3" output.txt > ph-grd.txt
212     cd ../verification/natl_box_adjoint/results_seaice
213     matlab
214     lookat_exp8
215    
216    
217     #####################
218     # Experiment no. 10 #
219     #####################
220     # Set up a 100-day sensitivity experiment.
221     # Things start falling apart, see below.
222     # Longer integrations periods cause NANs in adjoint gradient.
223     # Note: cost_ssh is hardwired for 1-day ssh records
224     # "topexperiod" in data.cost is never used.
225    
226     # Compile code in build/:
227     cd ../build
228     rm -f *.o *.f *.p rii_files *.flow
229     rm -f *.F *.h *.c Makefile* *.template genmake_*
230     ../../../tools/genmake2 -mods=../code_seaice
231     make depend
232     make adall
233     make ftlall
234    
235     # To run:
236     # PH: I modified data to run 24 timesteps only
237     cd ../exe
238     cp ../input_seaice/* .
239     cp data.24 data
240     cp ../input_bulk/data.grdchk .
241     # run the ADM
242     ./mitgcmuv_ad >&! output.txt_adm
243     # run the TLM
244     ./mitgcmuv_ftl >&! output.txt_tlm
245    
246     # For 100 days, adjoint gradient is NAN
247    
248     # Following table compares finite difference gradient for various choices
249     # of grdchk_eps.
250     1.d-12 -.177327175E+20 0.140230277E+20 -.254542273E+20 0.138603531E+19
251     1.d-8 0.174714613E+16 -.527867903E+15 0.403581037E+15 0.377322748E+12
252     1.d-4 0.999954825E+11 0.156018218E+12 -.474931072E+11 -.357260091E+11
253     1.d-2 0.634576350E+09 -.185440863E+10 -.599212833E+09 -.334417056E+10
254    
255     # Following table compares adjoint and finite difference gradient for
256     # various choices of nTimeSteps
257     # with nTimeSteps=4
258     adj grad 0.103151639E+00 0.308058453E+00 -.732758366E+04 -.161844794E+06
259     1.d-4 0.305175781E+00 0.305175781E+00 -.732757568E+04 -.161844788E+06
260     # with nTimeSteps=24
261     adj grad 0.137444822E+04 0.365984818E+04 0.256198267E+05 -.204077640E+06
262     1.d-4 0.137313843E+04 0.365982056E+04 0.256221008E+05 -.204077454E+06
263     # with nTimeSteps=240
264     adj grad 0.443328852E+39 -.133652133E+38 -.905448973E+38 -.598093614E+40
265     1.d-4 -.209616183E+10 0.257127391E+10 -.917457365E+10 0.104622205E+10
266     # with nTimeSteps=480
267     adj grad -.217869560E+39 0.656820132E+37 0.444973903E+38 0.293927165E+40
268     1.d-4 -.848343350E+09 0.186724144E+10 -.768266406E+10 0.188919420E+10
269     # with nTimeSteps=960
270     adj grad -.125255788E+49 0.377613667E+47 0.255820763E+48 0.168982206E+50
271     1.d-4 0.683065531E+10 -.241320782E+11 -.359080729E+11 0.222805821E+11
272     # with nTimeSteps=1920
273     adj grad 0.993422132E+94 -.299490969E+93 -.202895220E+94 -.134022280E+96
274     1.d-4 0.677603652E+12 0.115923780E+12 -.383606246E+12 -.393716060E+12
275     # with nTimeSteps=2400
276     adj grad 0.204800998+114 -.617421814+112 -.418282846+113 -.276296408+115
277     1.d-4 0.796041873E+12 0.280172355E+12 -.429971310E+12 -.655627972E+12
278     # with nTimeSteps=3600
279     adj grad 0.123800977+143 -.373227788+141 -.252849475+142 -.167019524+144
280     1.d-4 0.154270431E+12 0.246315840E+12 0.392679620E+12 0.816557457E+11
281    
282     # With cost_ice_flag = 2
283     # adj grad 0.500216760+194 -.353450868+194 -.799381224+195 -.173412383+194
284     # 1.d-04 -.327859949E+08 -.300222927E+10 0.252204364E+09 -.658448165E+10
285     # 1.d-03 -.572185323E+08 0.614938314E+08 -.850914638E+09 0.248982808E+08
286     # 1.d-02 -.624721639E+07 -.147537212E+08 -.114497432E+09 -.358163526E+08
287     # 1.d-01 0.603974309E+07 -.684786020E+07 -.149337451E+09 -.601790080E+07
288     # 1.d-00 -.497381448E+06 -.404972657E+05 -.142684281E+09 -.501277195E+08
289    
290     # 100 day experiment with cost_ice_flag = 3, but in North Atlantic
291     # domain, i.e., with no sea-ice is OK
292     adj grad 0.234593317E+17 0.166950683E+17 0.238665515E+17 0.249850733E+17
293     1.d-4 0.234313954E+17 0.166674930E+17 0.238322031E+17 0.249217155E+17
294    
295     # with same order of magnitude results as those from pkg/exf bulk formulae
296     adj grad 0.279968788E+17 0.226979382E+17 0.269224396E+17 0.323359773E+17
297     1.d-4 0.279944626E+17 0.226935335E+17 0.269274317E+17 0.323399293E+17
298    
299     # 10 day experiment with cost_ice_flag = 3 is OK
300     adj grad 0.353941629E+17 0.955451129E+16 -.265793314E+17 0.232229067E+16
301     1.d-4 0.353943893E+17 0.955563114E+16 -.265195776E+17 0.232137949E+16
302     1-fd/adj -.639540199E-05 -.117207086E-03 0.224813073E-02 0.392362727E-03
303    
304     # 100 day experiment with cost_ice_flag = 3 fails
305     adj grad 0.134326162+285 0.434825818+285 0.353667347+285 -.121707013+286
306     1.d-4 -.248910431E+20 -.581887317E+20 0.530805948E+18 0.554441614E+20
307    
308     # 100 day experiment with cost_ice_flag = 4 fails
309     adj grad 0.942881479+279 0.305219181+280 0.248251262+280 -.854303341+280
310     1.d-4 0.550158678E+19 -.107685572E+20 -.139042495E+20 0.445855968E+20
311    
312     # 100 day experiment with cost_ice_flag = 5 fails
313     adj grad 0.149606733+285 0.484290396+285 0.393899563+285 -.135552065+286
314     1.d-4 -.300535490E+20 -.689378119E+20 0.300954675E+19 0.767231924E+20
315    
316    
317     # With cost_ice_flag = 6, i.e., a quadratic cost function
318     # 1.d-04 -.525101466E+01 -.328685504E+03 0.267928050E+02 -.563072857E+03
319     # 1.d-03 -.313705632E+01 0.463320361E+01 -.458088751E+02 0.571140277E+00
320     # 1.d-02 -.232806373E+00 -.104311448E+01 0.173597838E+02 -.394705606E+01
321     # 1.d-01 0.515424287E+00 -.578962143E+00 0.108556846E+02 -.563596055E+00
322     # 1.d-00 -.480177391E-01 -.327366136E-02 0.107190195E+02 -.498391127E+01
323     # adj grad NAN NAN NAN NAN
324    
325     # 100 day experiments with all albedos set to a constant 0.4, with
326     # IMAX_TICE=50, and with HSNOW=0 also fail with NANs
327    
328     # 100-day with undef ALLOW_GMREDI
329     adj grad 0.846385475+258 0.198955589+259 0.729012228+259 0.320320183+256
330     1.d-4 -.577220699E+12 -.987464011E+12 -.342421713E+12 -.553564700E+12
331    
332     # Adjoint gradient is OK for 100 days is KPP and GM
333     # are undefined in CPP_OPTIONS file:
334     adj grad 0.717330426E+06 0.106802371E+07 0.443223909E+06 -.581863641E+08
335     1.d-4 0.717581787E+06 0.106213684E+07 0.441527100E+06 -.581863293E+08
336     # Above experiment fails with NANs when extended to 375 days
337     # but it works OK is SEAICE_initialHEFF = 0.0 instead of 1.0
338     adj grad -.256772533E+05 -.782710992E+05 -.273621212E+05 -.133527839E+09
339     1.d-4 -.256640625E+05 -.779858398E+05 -.272338867E+05 -.133528066E+09
340     # 10-yr experiment with above parameters fails with NANs
341    
342     # 100-day with yneg=0 in growth.F
343     adj grad -.246704815E+07 -.171229406E+09 -.113862028E+08 -.156706660E+08
344     1.d-4 -.246699463E+07 -.171229277E+09 -.113861792E+08 -.156706763E+08
345     # 375-day with yneg=0 in growth.F
346     (in progress)
347    
348    
349     #####################
350     # Experiment no. 11 #
351     #####################
352     >>>>>>>>>> PH: THIS ONE NOT YET UPDATED <<<<<<<<<<
353     # Same as experiment 8, but using 2-CPU MPI configuration.
354    
355     # Compile code in bin/:
356     cd ../bin
357     rm -rf *.o *.f *.p rii_files
358     rm -rf *.F *.h *.c Makefile*
359     cp ../verification/natl_box_adjoint/code_seaice/*.h .
360     cp ../verification/natl_box_adjoint/code_seaice/.genmakerc .
361     cp ../verification/natl_box_adjoint/code_seaice/SIZE.h.MPI SIZE.h
362     cp ../verification/natl_box_adjoint/code_seaice/CPP_EEOPTIONS.h.MPI CPP_EEOPTIONS.h
363     # Configure and compile the code:
364     ../tools/genmake -mpi -makefile
365     # ==> on alhena use:
366     # ../tools/genmake -platform=o2k -mpi -makefile
367     make depend
368     # Generate the adjoint code:
369     cd ../adjoint
370     cp ../verification/natl_box_adjoint/code_seaice/makefile .
371     make adtaf
372     make adchange
373     rm -f makefile
374     # Go back and compile the code:
375     cd ../bin
376     make
377     # To run:
378     cd ../exe
379     cp ../verification/natl_box_adjoint/input_seaice/* .
380     cp data.001 data
381     cp ../verification/natl_box_adjoint/input_bulk/data.grdchk .
382     mpirun -np 2 mitgcmuv
383     # To verify the results of the gradient check, type:
384     grep "ph-grd 3" STDOUT.0000
385     # To plot adjoint sensitivy fields
386     cd ../verification/natl_box_adjoint/results_seaice
387     matlab
388     lookat_exp10
389    
390    
391     #####################
392     # Experiment no. 12 #
393     #####################
394     # Same as experiment 6, but including LSR dynamic solver.
395    
396     # Compile code in build/:
397     cd ../build
398     rm -f *.o *.f *.p rii_files *.flow
399     rm -f *.F *.h *.c Makefile* *.template genmake_*
400     ../../../tools/genmake2 -mods=../code_seaice
401     cp ../code_seaice/SEAICE_OPTIONS.h.DYN SEAICE_OPTIONS.h
402     make depend
403     make adall
404     make ftlall
405    
406     # To run:
407     cd ../exe
408     cp ../input_seaice/* .
409     cp data.seaice.lsr data.seaice
410     cp ../input_bulk/data.grdchk .
411     # run the ADM
412     ./mitgcmuv_ad >&! output.txt_adm
413     # run the TLM
414     ./mitgcmuv_tlm >&! output.txt_tlm
415    
416     # To verify the results of the gradient check, type:
417     grep grad-res output.txt_adm
418     # A reference output is in:
419     grep grad-res ../results_seaice/output_exp12.txt_adm
420    
421    
422     #####################
423     # Experiment no. 13 #
424     #####################
425     # Same as experiment 12, but finite difference gradient check for
426     # air temperature is computed and compared for the complete domain.
427    
428     # To run:
429     cd ../exe
430     cp ../input_seaice/* .
431     cp data.seaice.lsr data.seaice
432     ./mitgcmuv_ad >&! output.txt_adm
433     # To verify the results of the gradient check, type:
434     grep grad-res output.txt_adm > grad-res.txt
435     cd ../results_seaice
436     matlab
437     lookat_exp8
438    
439    
440     #####################
441     # Experiment no. 14 #
442     #####################
443     >>>>>>>>>> PH: THIS ONE NOT YET UPDATED <<<<<<<<<<
444     # Same as in 12 but for a 100-day sensitivity experiment.
445    
446     # Compile code in bin/:
447     cd ../bin
448     rm -rf *.o *.f *.p rii_files
449     rm -rf *.F *.h *.c Makefile*
450     cp ../verification/natl_box_adjoint/code_seaice/*.h .
451     rm -f tamc.h
452     cp ../verification/natl_box_adjoint/code_seaice/.genmakerc .
453     cp ../verification/natl_box_adjoint/code_seaice/SEAICE_OPTIONS.h.MULTILEVEL SEAICE_OPTIONS.h
454     # Configure and compile the code:
455     ../tools/genmake -makefile
456     make depend
457     # Generate the adjoint code:
458     cd ../adjoint
459     cp ../verification/natl_box_adjoint/code_seaice/makefile .
460     make adtaf
461     make adchange
462     rm -f makefile
463     # Go back and compile the code:
464     cd ../bin
465     make
466     # To run:
467     cd ../exe
468     cp ../verification/natl_box_adjoint/input_seaice/* .
469     cp data.100day data
470     cp ../verification/natl_box_adjoint/input_bulk/data.grdchk .
471     cp data.seaice.lsr data.seaice
472     ./mitgcmuv >&! output.txt
473     # To verify the results of the gradient check, type:
474     grep "ph-grd 3" output.txt
475    
476     # For 100-day experiment, with cost_ice_flag = 1, the adjoint gradient
477     # blows up, as in Exp. 10
478     # 1.d-04 0.251994583E+11 -.899637862E+10 0.372048919E+10 -.344972301E+10
479     # adj grad -.160660304+210 -.378763253+210 -.239235971+211 -.386444881+209
480    
481     # With cost_ice_flag = 2, i.e., mean sea-ice area
482     # 1.d-04 -.152618243E+11 0.605974121E+06 -.155375485E+11 -.153368205E+11
483     # adj grad 0.000000000E+00 0.000000000E+00 -.124076923E+09 0.000000000E+00
484    
485     # With cost_ice_flag = 6, i.e., a quadratic cost function
486     # 1.d-12 -.106128607E+12 0.106330784E+12 -.106446555E+12 -.106237252E+12
487     # 1.d-08 0.106450924E+08 0.103670536E+05 0.349155947E+05 0.335081902E+05
488     # 1.d-04 -.106143365E+04 0.206965778E+00 -.105672737E+04 -.106326894E+04
489     # 1.d-02 -.120891636E-02 0.106325012E+02 0.841459268E+01 -.107119297E+02
490     # 1.d-01 -.102221209E-02 -.124805738E-02 0.821489714E+01 -.331974254E-02
491     # 1.d-00 0.113825328E-03 -.105881751E+00 0.104550010E+02 -.106209116E+00
492     # adj grad 0.000000000E+00 0.000000000E+00 0.887775373E+01 0.000000000E+00
493    
494    
495     #####################
496     # Experiment no. 15 #
497     #####################
498     # Same as experiment 6, but with SEAICE_MULTILEVEL.
499    
500     # Compile code in build/:
501     rm -f *.o *.f *.p rii_files *.flow
502     rm -f *.F *.h *.c Makefile* *.template genmake_*
503     ../../../tools/genmake2 -mods=../code_seaice
504     cp ../code_seaice/SEAICE_OPTIONS.h.MULTILEVEL SEAICE_OPTIONS.h
505     make depend
506     make adall
507    
508     # To run:
509     cd ../exe
510     cp ../input_seaice/* .
511     cp ../input_bulk/data.grdchk .
512     ./mitgcmuv_ad >&! output.txt
513    
514     # To verify the results of the gradient check, type:
515     grep grad-res output.txt
516     # The reference output is in:
517     grep grad-res ../results_seaice/output_exp15.txt_adm
518    
519     # This test suggests that SEAICE_MULTILEVEL decreases the accuracy of
520     # the adjoint model, perhaps because the adjoint model is not handling
521     # multiple recomputations in budget properly.
522    
523    
524     #####################
525     # Experiment no. 20 #
526     #####################
527     # Same as experiment 10, but using divided adjoint.

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