--- MITgcm/verification/natl_box/README	2001/07/30 20:44:24	1.3
+++ MITgcm/verification/natl_box/README	2014/03/10 01:35:17	1.4
@@ -1,45 +1,43 @@
 Example: Subtropical North Atlantic Subduction area
-===================================================
+====================================================
 - with KPP & shortwave heating
 - no GMRedi
 
-To apply the changes to the default configuration of MITgcmUV:
-  cd bin
-  ln -s ../verification/natl_box/code/.genmakerc .
-  ln -s ../verification/natl_box/code/*.h .
-  ln -s ../verification/natl_box/code/*.F .
-
 Configure and compile the code:
-  cd ../bin
-  ../tools/genmake -makefile
+  cd build
+  ../../../tools/genmake2 -mods ../code [-of my_platform_optionFile]
   make depend
   make
+  cd ..
 
 To run:
-  cd ../exe
-  cp ../verification/natl_box/input/* .
-  mitgcmuv >&! run.out
+  cd run
+  ln -s ../input/* .
+  ../input/prepare_run
+  ln -s ../build/mitgcmuv .
+  ./mitgcmuv > output.txt
+  cd ..
 
-There is comparison output in:
- ../verification/natl_box/output/run.out
+There is comparison output in the directory:
+  results/output.txt
 
+----------------------------------------------------
 A FORTRAN program provides a verification procedure.
 It is based on the boundary layer depth and will either issue:
 'North Atlantic test passed.  KPPhbl file is unchanged.'
 or:
 'North Atlantic test failed.  KPPhbl file has changed.'
 
-  cd ../exe
-  ln -sf ../verification/natl_box/output/KPPhbl.001.001.data \
-         KPPhbl_orig
-  f77 ../verification/natl_box/output/comp_orig.F -o comp_orig
+  cd run
+  ln -sf ../output/KPPhbl.001.001.data KPPhbl_orig
+  f77 ../results/comp_orig.F -o comp_orig
   comp_orig
 
-N.B.: On ORIGIN 2000 use f77 -bytereclen 
+N.B.: On ORIGIN 2000 use f77 -bytereclen
 
-A matlab script, comp_output.m, creates plots for
+A matlab script, matlab/comp_output.m, creates plots for
 reference (c32) and new surface temperature, boundary layer depth,
-meridional section of tracer diffusivities, and 
+meridional section of tracer diffusivities, and
 corresponding differences.
 
 Comments: