| 1 |
edhill |
1.1 |
program cvfloat |
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c |
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c======================================================================= |
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c converts binary float trajectories to netCDF |
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c |
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c * must be compiled with a FORTRAN90 compiler and netcdf library |
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c f90 cvfloat.F /usr/local/lib/libnetcdf.a |
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c f90 cvfloat.F /net/ice/ecco/lib/libnetcdf.a (for the ECCO cluster) |
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c * uses namelist data.float |
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c |
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c Arne Biastoch, abiastoch@ucsd.edu, 11/16/2000 |
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c |
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c======================================================================= |
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c |
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integer stdin, stdout, stderr |
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parameter (stdin = 5, stdout = 6, stderr = 6) |
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c |
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character iotext*80, expnam*60, stamp*32 |
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c |
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c variables for filenames |
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integer narg, npart |
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character*6 cpart |
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character*1 split |
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integer factor(6) |
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data factor / 1.e5, 1.e4, 1.e3, 1.e2, 1.e1, 1.e0 / |
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character*(80) dataFName |
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logical exst |
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c |
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c parameter(spval=-1.0e+23) |
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parameter(spval=-999.) |
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c |
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c number of variables per record |
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parameter(imax=10) |
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c |
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integer narg |
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logical preflag |
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c |
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c netCDF ids |
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c |
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integer iret, ncid, VARid |
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integer partdim,Timedim |
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integer partid, Timeid |
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integer xpartid, ypartid, kpartid |
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integer tempid, saltid, uvelid, vvelid, zetaid |
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c |
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c variable shapes, corner and edge lengths |
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c |
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integer dims(4), corner(4), edges(4) |
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c |
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character*1 inumber(4) |
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c |
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c attribute vectors |
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c |
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integer longval(1) |
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real floatval(2) |
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character*1 charval(1) |
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character name*24, unit*16, grid*2 |
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logical usingSphericalPolarGrid |
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c |
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c data variables for NetCDF |
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c |
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real, dimension(:), allocatable :: pnum,time |
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real, dimension(:,:), allocatable :: xpart,ypart,kpart |
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& ,uvel,vvel,temp,salt,zeta |
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double precision, dimension(:), allocatable :: tmp |
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c |
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c namelist contains |
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c |
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data npart /10/ |
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character*50 outname2 |
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character*50 fName, outname |
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data fName / 'float_trajectories' / |
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character*20 startDate |
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data startDate / '01-JAN-1992:12:00:00' / |
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data expnam /'Experimentname not set in data.float'/ |
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data usingSphericalPolarGrid /.true./ |
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namelist /dimensions/ expnam, startDate, usingSphericalPolarGrid |
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namelist /floats/ fName |
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c |
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c in most systems netcdf.inc should be side in /usr/local/include |
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c include '/usr/local/include/netcdf.inc' |
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c include '/users/guests2/ux451985/netcdf/include/netcdf.inc' |
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include '/net/ice/ecco/include/netcdf.inc' |
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c |
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c call GETARG(1,cpart) |
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c npart=0 |
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c do i=1,6 |
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c read(cpart(i:i),'(a1)') split |
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c npart = npart + factor(i)*(ICHAR(split)-48) |
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c enddo |
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c print*, 'npart= ',npart |
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c call GETARG(2,fName) |
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ioun=11 |
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open(ioun,file='data.float',status='old',form='formatted') |
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read (unit=ioun, end=666, nml=dimensions) |
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write (stdout,dimensions) |
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close (ioun) |
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666 continue |
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open(ioun,file='data.float',status='old',form='formatted') |
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read (unit=ioun, end=999, nml=floats) |
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write (stdout,floats) |
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close (ioun) |
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999 continue |
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c |
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c preliminary use: |
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c if floats should be viewed during a current model run the first |
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c line of the file may not be updated correctly, i.e. there might |
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c be more times than stated at the beginning. By giving a flag |
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c only icount-1 timesteps are used |
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c |
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preflag = .false. |
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narg=iargc() |
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if ( narg .gt. 0 ) preflag = .true. |
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c |
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c strip names |
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c |
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IL=ILNBLNK( fName ) |
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c check existent files |
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c |
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iGmax=1 |
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do m=1,100 |
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write(dataFname(1:80),'(2a,i3.3,a,i3.3,a)') |
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& fName(1:IL),'.',iGmax,'.',1,'.data' |
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inquire( file=dataFname, exist=exst ) |
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if (exst) iGmax = iGmax + 1 |
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enddo |
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| 132 |
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jGmax=1 |
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do m=1,100 |
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write(dataFname(1:80),'(2a,i3.3,a,i3.3,a)') |
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& fName(1:IL),'.',1,'.',jGmax,'.data' |
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inquire( file=dataFname, exist=exst ) |
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if (exst) jGmax = jGmax + 1 |
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enddo |
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| 140 |
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iGmax = iGmax - 1 |
| 141 |
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jGmax = jGmax - 1 |
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print*, 'There are ',iGmax,' x ',jGmax,' files' |
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| 144 |
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c open first file and get dimensions (float number and time) |
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c |
| 146 |
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ilen=10*8 |
| 147 |
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allocate (tmp(imax)) |
| 148 |
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c |
| 149 |
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write(dataFname(1:80),'(2a,a)') |
| 150 |
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& fName(1:IL),'.001.001.data' |
| 151 |
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open(1,file=dataFname,status='old',form='unformatted' |
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& ,access='direct',recl=ilen) |
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c |
| 154 |
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read(1,rec=1) tmp |
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rcountstart = SNGL(tmp(2)) |
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rcountdelta = SNGL(tmp(4)) |
| 157 |
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icount = INT(tmp(5)) |
| 158 |
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npart = INT(tmp(6)) |
| 159 |
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close(1) |
| 160 |
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print*, 'npart = ',npart |
| 161 |
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print*, 'timesteps= ',icount |
| 162 |
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if (preflag) then |
| 163 |
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icount=icount-1 |
| 164 |
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print*, 'preliminary --> use timesteps= ',icount |
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endif |
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| 167 |
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c----------------------------------------------------------------------- |
| 168 |
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c allocate variables |
| 169 |
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c----------------------------------------------------------------------- |
| 170 |
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c |
| 171 |
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allocate (pnum(npart)) |
| 172 |
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allocate (time(icount)) |
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allocate (xpart(npart,icount)) |
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allocate (ypart(npart,icount)) |
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allocate (kpart(npart,icount)) |
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allocate (uvel(npart,icount)) |
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allocate (vvel(npart,icount)) |
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allocate (temp(npart,icount)) |
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allocate (salt(npart,icount)) |
| 180 |
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allocate (zeta(npart,icount)) |
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| 182 |
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c initialize arrays |
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c |
| 184 |
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do m=1,npart |
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do n=1,icount |
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xpart(m,n) = spval |
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ypart(m,n) = spval |
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kpart(m,n) = spval |
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uvel(m,n) = spval |
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vvel(m,n) = spval |
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temp(m,n) = spval |
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salt(m,n) = spval |
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zeta(m,n) = spval |
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enddo |
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enddo |
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| 197 |
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c generate axes |
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c |
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time(1)=rcountstart |
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do m=2,icount |
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time(m) = time(m-1)+rcountdelta |
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enddo |
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print*, 'time: ',time |
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c |
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do ip=1,npart |
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pnum(ip) = FLOAT(ip) |
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enddo |
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c print*, 'pnum: ',pnum |
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c |
| 210 |
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c----------------------------------------------------------------------- |
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c open files and read input |
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c----------------------------------------------------------------------- |
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c |
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c |
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itotalrecord = 0 |
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| 217 |
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do iG=1,iGmax |
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do jG=1,jGmax |
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c |
| 220 |
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write(dataFname(1:80),'(2a,i3.3,a,i3.3,a)') |
| 221 |
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& fName(1:IL),'.',iG,'.',jG,'.data' |
| 222 |
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open(1,file=dataFname,status='old',form='unformatted' |
| 223 |
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& ,access='direct',recl=ilen) |
| 224 |
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c |
| 225 |
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read(1,rec=1) tmp |
| 226 |
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imaxrecord = INT(tmp(1)) |
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print*,'read ',dataFname |
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itotalrecord = itotalrecord + imaxrecord |
| 229 |
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| 230 |
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do irec=2,imaxrecord+1 |
| 231 |
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| 232 |
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read(1,rec=irec) tmp |
| 233 |
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ip = INT(tmp(1)) |
| 234 |
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if (ip .gt. npart) then |
| 235 |
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print*,'ip out of order: ',ip,npart |
| 236 |
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stop |
| 237 |
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endif |
| 238 |
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np = INT((tmp(2)-rcountstart)/rcountdelta+1) |
| 239 |
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| 240 |
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c this is only for prelimiray results. Use only icount-1 timesteps |
| 241 |
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if (preflag .and. (np .gt. icount .or. np .lt. 1)) |
| 242 |
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& goto 100 |
| 243 |
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| 244 |
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if (usingSphericalPolarGrid) then |
| 245 |
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xpart(ip,np) = SNGL(tmp(3)) |
| 246 |
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ypart(ip,np) = SNGL(tmp(4)) |
| 247 |
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else |
| 248 |
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xpart(ip,np) = SNGL(tmp(3))/1000. |
| 249 |
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ypart(ip,np) = SNGL(tmp(4))/1000. |
| 250 |
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endif |
| 251 |
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kpart(ip,np) = SNGL(tmp(5)) |
| 252 |
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uvel(ip,np) = SNGL(tmp(6)) |
| 253 |
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vvel(ip,np) = SNGL(tmp(7)) |
| 254 |
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temp(ip,np) = SNGL(tmp(8)) |
| 255 |
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salt(ip,np) = SNGL(tmp(9)) |
| 256 |
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zeta(ip,np) = SNGL(tmp(10)) |
| 257 |
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c if (ip .eq. 59) |
| 258 |
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c & print*, 'rec= ',irec,' npart= ',ip,' timestep= ',np, |
| 259 |
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c & time(np), |
| 260 |
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c & xpart(ip,np),ypart(ip,np),kpart(ip,np) |
| 261 |
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100 continue |
| 262 |
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enddo |
| 263 |
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| 264 |
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close(1) |
| 265 |
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enddo |
| 266 |
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enddo |
| 267 |
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| 268 |
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print*,icount,' x ',npart,' = ',icount*npart,' records expected,', |
| 269 |
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& ' found ',itotalrecord,' float records' |
| 270 |
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print*,'==> ',icount*npart-itotalrecord,' float records missing' |
| 271 |
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c |
| 272 |
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c |
| 273 |
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c----------------------------------------------------------------------- |
| 274 |
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c define netCDF variables |
| 275 |
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c----------------------------------------------------------------------- |
| 276 |
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c |
| 277 |
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write(stdout,*) ' Start Converting' |
| 278 |
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c |
| 279 |
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c enter define mode: NCCLOB=overwrite, NCNOCLOB=do not overwrite |
| 280 |
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c |
| 281 |
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IL=ILNBLNK( fname ) |
| 282 |
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outname2=fname(1:IL)//'.cdf' |
| 283 |
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write (stdout,*) |
| 284 |
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& ' ==> Writing a trajectories to file ',outname2(1:IL+4) |
| 285 |
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ncid = nccre(outname2(1:IL+4), NCCLOB, iret) |
| 286 |
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if (iret .ne. 0) write(stdout,*) 'Error: Open NetCDF file' |
| 287 |
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c |
| 288 |
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c define dimensions |
| 289 |
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c |
| 290 |
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partdim = ncddef(ncid, 'Particles', npart, iret) |
| 291 |
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Timedim = ncddef(ncid, 'Time', NCUNLIM, iret) |
| 292 |
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if (iret .ne. 0) write(stdout,*) 'Error: define dimensions' |
| 293 |
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c |
| 294 |
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c define variables |
| 295 |
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c |
| 296 |
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dims(1) = partdim |
| 297 |
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partid = ncvdef (ncid,'Particles',NCFLOAT,1,dims,iret) |
| 298 |
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dims(1) = Timedim |
| 299 |
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Timeid = ncvdef (ncid,'Time', NCFLOAT,1,dims,iret) |
| 300 |
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if (iret .ne. 0) write(stdout,*) 'Error: define axis ids' |
| 301 |
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c |
| 302 |
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dims(1) = partdim |
| 303 |
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dims(2) = Timedim |
| 304 |
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xpartid = ncvdef (ncid,'xpart', NCFLOAT,2,dims,iret) |
| 305 |
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ypartid = ncvdef (ncid,'ypart', NCFLOAT,2,dims,iret) |
| 306 |
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kpartid = ncvdef (ncid,'kpart', NCFLOAT,2,dims,iret) |
| 307 |
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uvelid = ncvdef (ncid,'uvel', NCFLOAT,2,dims,iret) |
| 308 |
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vvelid = ncvdef (ncid,'vvel', NCFLOAT,2,dims,iret) |
| 309 |
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tempid = ncvdef (ncid,'temp', NCFLOAT,2,dims,iret) |
| 310 |
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saltid = ncvdef (ncid,'salt', NCFLOAT,2,dims,iret) |
| 311 |
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zetaid = ncvdef (ncid,'zeta', NCFLOAT,2,dims,iret) |
| 312 |
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if (iret .ne. 0) write(stdout,*) 'Error: define variable ids' |
| 313 |
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c |
| 314 |
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c----------------------------------------------------------------------- |
| 315 |
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c assign attributes |
| 316 |
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c----------------------------------------------------------------------- |
| 317 |
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c |
| 318 |
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charval(1) = ' ' |
| 319 |
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c |
| 320 |
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name = 'Particles Number ' |
| 321 |
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c unit = 'particle number ' |
| 322 |
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call ncaptc(ncid, partid, 'long_name', NCCHAR, 24, name, iret) |
| 323 |
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call ncaptc(ncid, partid, 'units', NCCHAR, 16, unit, iret) |
| 324 |
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c |
| 325 |
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name = 'Time' |
| 326 |
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unit = 'seconds' |
| 327 |
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call ncaptc(ncid, Timeid, 'long_name', NCCHAR, 24, name, iret) |
| 328 |
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call ncaptc(ncid, Timeid, 'units', NCCHAR, 16, unit, iret) |
| 329 |
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call ncaptc(ncid, Timeid,'time_origin',NCCHAR, 20,startDate, iret) |
| 330 |
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if (iret .ne. 0) write(stdout,*) 'Error: assign axis attributes' |
| 331 |
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c |
| 332 |
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floatval(1) = spval |
| 333 |
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c |
| 334 |
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if (usingSphericalPolarGrid) then |
| 335 |
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name = 'LONGITUDE ' |
| 336 |
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unit = 'degrees_W ' |
| 337 |
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else |
| 338 |
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name = 'X_t ' |
| 339 |
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unit = 'kilometer ' |
| 340 |
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endif |
| 341 |
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call ncaptc(ncid, xpartid, 'long_name', NCCHAR, 24, name, iret) |
| 342 |
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call ncaptc(ncid, xpartid, 'units', NCCHAR, 16, unit, iret) |
| 343 |
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call ncapt (ncid, xpartid,'missing_value',NCFLOAT,1,floatval,iret) |
| 344 |
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call ncapt (ncid, xpartid,'_FillValue', NCFLOAT, 1,floatval, iret) |
| 345 |
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c |
| 346 |
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if (usingSphericalPolarGrid) then |
| 347 |
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name = 'LATITUDE ' |
| 348 |
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unit = 'degrees_N ' |
| 349 |
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else |
| 350 |
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name = 'Y_t ' |
| 351 |
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unit = 'kilometer ' |
| 352 |
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endif |
| 353 |
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call ncaptc(ncid, ypartid, 'long_name', NCCHAR, 24, name, iret) |
| 354 |
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call ncaptc(ncid, ypartid, 'units', NCCHAR, 16, unit, iret) |
| 355 |
|
|
call ncapt (ncid, ypartid,'missing_value',NCFLOAT,1,floatval,iret) |
| 356 |
|
|
call ncapt (ncid, ypartid,'_FillValue', NCFLOAT, 1,floatval, iret) |
| 357 |
|
|
c |
| 358 |
|
|
name = 'LEVEL ' |
| 359 |
|
|
unit = 'LEVEL ' |
| 360 |
|
|
call ncaptc(ncid, kpartid, 'long_name', NCCHAR, 24, name, iret) |
| 361 |
|
|
call ncaptc(ncid, kpartid, 'units', NCCHAR, 16, unit, iret) |
| 362 |
|
|
call ncapt (ncid, kpartid,'missing_value',NCFLOAT,1,floatval,iret) |
| 363 |
|
|
call ncapt (ncid, kpartid,'_FillValue', NCFLOAT, 1,floatval, iret) |
| 364 |
|
|
c |
| 365 |
|
|
name = 'POTENTIAL TEMPERATURE ' |
| 366 |
|
|
unit = 'deg C ' |
| 367 |
|
|
call ncaptc(ncid, tempid, 'long_name', NCCHAR, 24, name, iret) |
| 368 |
|
|
call ncaptc(ncid, tempid, 'units', NCCHAR, 16, unit, iret) |
| 369 |
|
|
call ncapt (ncid, tempid, 'missing_value',NCFLOAT,1,floatval,iret) |
| 370 |
|
|
call ncapt (ncid, tempid, '_FillValue', NCFLOAT, 1,floatval, iret) |
| 371 |
|
|
c |
| 372 |
|
|
name = 'SALINITY ' |
| 373 |
|
|
unit = 'PSU ' |
| 374 |
|
|
call ncaptc(ncid, saltid, 'long_name', NCCHAR, 24, name, iret) |
| 375 |
|
|
call ncaptc(ncid, saltid, 'units', NCCHAR, 16, unit, iret) |
| 376 |
|
|
call ncapt (ncid, saltid, 'missing_value',NCFLOAT,1,floatval,iret) |
| 377 |
|
|
call ncapt (ncid, saltid, '_FillValue', NCFLOAT, 1,floatval, iret) |
| 378 |
|
|
c |
| 379 |
|
|
name = 'U VELOCITY ' |
| 380 |
|
|
unit = 'm/sec' |
| 381 |
|
|
call ncaptc(ncid, uvelid, 'long_name', NCCHAR, 24, name, iret) |
| 382 |
|
|
call ncaptc(ncid, uvelid, 'units', NCCHAR, 16, unit, iret) |
| 383 |
|
|
call ncapt (ncid, uvelid, 'missing_value',NCFLOAT,1,floatval,iret) |
| 384 |
|
|
call ncapt (ncid, uvelid, '_FillValue', NCFLOAT, 1,floatval, iret) |
| 385 |
|
|
c |
| 386 |
|
|
name = 'V VELOCITY ' |
| 387 |
|
|
unit = 'm/sec' |
| 388 |
|
|
call ncaptc(ncid, vvelid, 'long_name', NCCHAR, 24, name, iret) |
| 389 |
|
|
call ncaptc(ncid, vvelid, 'units', NCCHAR, 16, unit, iret) |
| 390 |
|
|
call ncapt (ncid, vvelid, 'missing_value',NCFLOAT,1,floatval,iret) |
| 391 |
|
|
call ncapt (ncid, vvelid, '_FillValue', NCFLOAT, 1,floatval, iret) |
| 392 |
|
|
c |
| 393 |
|
|
name = 'SEA SURFACE HEIGHT ' |
| 394 |
|
|
unit = 'm ' |
| 395 |
|
|
call ncaptc(ncid, zetaid, 'long_name', NCCHAR, 24, name, iret) |
| 396 |
|
|
call ncaptc(ncid, zetaid, 'units', NCCHAR, 16, unit, iret) |
| 397 |
|
|
call ncapt (ncid, zetaid,'missing_value',NCFLOAT, 1,floatval,iret) |
| 398 |
|
|
call ncapt (ncid, zetaid,'_FillValue', NCFLOAT, 1, floatval, iret) |
| 399 |
|
|
c |
| 400 |
|
|
if (iret .ne. 0) write(stdout,*) 'Error: define variable attrib.' |
| 401 |
|
|
c |
| 402 |
|
|
expname= ' ' |
| 403 |
|
|
stamp = ' ' |
| 404 |
|
|
call ncaptc(ncid, NCGLOBAL, 'title', NCCHAR, 60, expnam, iret) |
| 405 |
|
|
call ncaptc(ncid, NCGLOBAL, 'history', NCCHAR, 32, stamp, iret) |
| 406 |
|
|
c |
| 407 |
|
|
c----------------------------------------------------------------------- |
| 408 |
|
|
c leave define mode |
| 409 |
|
|
c----------------------------------------------------------------------- |
| 410 |
|
|
c |
| 411 |
|
|
call ncendf(ncid, iret) |
| 412 |
|
|
c |
| 413 |
|
|
c |
| 414 |
|
|
c----------------------------------------------------------------------- |
| 415 |
|
|
c put variables in netCDF file |
| 416 |
|
|
c----------------------------------------------------------------------- |
| 417 |
|
|
c |
| 418 |
|
|
c store Particles |
| 419 |
|
|
corner(1) = 1 |
| 420 |
|
|
edges(1) = npart |
| 421 |
|
|
call ncvpt(ncid, partid, corner, edges, pnum, iret) |
| 422 |
|
|
c |
| 423 |
|
|
c store Time |
| 424 |
|
|
corner(1) = 1 |
| 425 |
|
|
edges(1) = icount |
| 426 |
|
|
call ncvpt(ncid, Timeid, corner, edges, Time, iret) |
| 427 |
|
|
c |
| 428 |
|
|
c store values |
| 429 |
|
|
corner(1) = 1 |
| 430 |
|
|
corner(2) = 1 |
| 431 |
|
|
edges(1) = npart |
| 432 |
|
|
edges(2) = icount |
| 433 |
|
|
VARid=xpartid |
| 434 |
|
|
call ncvpt(ncid, VARid, corner, edges, xpart, iret) |
| 435 |
|
|
VARid=ypartid |
| 436 |
|
|
call ncvpt(ncid, VARid, corner, edges, ypart, iret) |
| 437 |
|
|
VARid=kpartid |
| 438 |
|
|
call ncvpt(ncid, VARid, corner, edges, kpart, iret) |
| 439 |
|
|
VARid=tempid |
| 440 |
|
|
call ncvpt(ncid, VARid, corner, edges, temp, iret) |
| 441 |
|
|
VARid=saltid |
| 442 |
|
|
call ncvpt(ncid, VARid, corner, edges, salt, iret) |
| 443 |
|
|
VARid=uvelid |
| 444 |
|
|
call ncvpt(ncid, VARid, corner, edges, uvel, iret) |
| 445 |
|
|
VARid=vvelid |
| 446 |
|
|
call ncvpt(ncid, VARid, corner, edges, vvel, iret) |
| 447 |
|
|
VARid=zetaid |
| 448 |
|
|
call ncvpt(ncid, VARid, corner, edges, zeta, iret) |
| 449 |
|
|
c |
| 450 |
|
|
if (iret .ne. 0) write(stdout,*) 'Error: write variables' |
| 451 |
|
|
call ncclos (ncid, iret) |
| 452 |
|
|
c |
| 453 |
|
|
write(stdout,*) ' End ' |
| 454 |
|
|
|
| 455 |
|
|
end |
| 456 |
|
|
INTEGER FUNCTION ILNBLNK( string ) |
| 457 |
|
|
C /==========================================================\ |
| 458 |
|
|
C | FUNCTION ILNBLNK | |
| 459 |
|
|
C | o Find last non-blank in character string. | |
| 460 |
|
|
C \==========================================================/ |
| 461 |
|
|
IMPLICIT NONE |
| 462 |
|
|
CHARACTER*(*) string |
| 463 |
|
|
CEndOfInterface |
| 464 |
|
|
INTEGER L, LS |
| 465 |
|
|
C |
| 466 |
|
|
LS = LEN(string) |
| 467 |
|
|
ILNBLNK = LS |
| 468 |
|
|
DO 10 L = LS, 1, -1 |
| 469 |
|
|
IF ( string(L:L) .EQ. ' ' ) GOTO 10 |
| 470 |
|
|
ILNBLNK = L |
| 471 |
|
|
GOTO 11 |
| 472 |
|
|
10 CONTINUE |
| 473 |
|
|
11 CONTINUE |
| 474 |
|
|
C |
| 475 |
|
|
RETURN |
| 476 |
|
|
END |
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