| 1 |
#!/bin/csh |
| 2 |
#PBS -N fizhiT3 |
| 3 |
#PBS -l ncpus=24 |
| 4 |
#PBS -l walltime=08:00:00 |
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#PBS -j oe |
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#PBS -o /nobackup2b/molod/fizhi-cs-32x32x40-hfac02/input/stdout |
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########PBS -q normal |
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#PBS -V |
| 9 |
|
| 10 |
echo 'start' |
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#---------------------------------------------- |
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set namPBS=fizhiT3 |
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set runDir=/nobackup2b/molod/fizhi-cs-32x32x40-hfac02/input |
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set executable=/nobackup2b/molod/fizhi-cs-32x32x40-hfac02/build/mitgcmuv |
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#------------------- |
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cd $runDir |
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|
| 18 |
#------ |
| 19 |
limit stacksize unlimited |
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module purge |
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module load modules scsl.1.6.1.0 intel-comp.9.1.039 mpt.1.12.0.nas pd-netcdf.3.6.0-p1 |
| 22 |
#------ |
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|
| 24 |
set its=`egrep 'nIter0' data | sed 's/ nIter0=//'| sed 's/,$//'` |
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|
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#------------------- |
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mpirun -np 24 $executable |
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#------------------- |
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echo 'Copying datetime file to datetime0 - time is: ' `cat datetime` |
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cp datetime datetime0 |
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|
| 32 |
set ite=`grep CHECKPOINT STDOUT.0000 | grep ckptA | sed 's/(PID.TID 0000.0001) %CHECKPOINT//' | sed 's/ //g' | sed 's/ckptA//'` |
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set nitPick = `/u/molod/bin/add0upto10c $ite` |
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if ( -f pickup.ckptA.001.001.data ) then |
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echo 'file:' pickup.ckptA.001.001.data 'exist' |
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#- prepare new submission : |
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echo 'Copy pickup ckptA files to pickup ' $nitPick 'files' |
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mv pickup.ckptA.001.001.data pickup.$nitPick.001.001.data |
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mv pickup.ckptA.002.001.data pickup.$nitPick.002.001.data |
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mv pickup.ckptA.003.001.data pickup.$nitPick.003.001.data |
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mv pickup.ckptA.004.001.data pickup.$nitPick.004.001.data |
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mv pickup.ckptA.005.001.data pickup.$nitPick.005.001.data |
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mv pickup.ckptA.006.001.data pickup.$nitPick.006.001.data |
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mv pickup.ckptA.007.001.data pickup.$nitPick.007.001.data |
| 45 |
mv pickup.ckptA.008.001.data pickup.$nitPick.008.001.data |
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mv pickup.ckptA.009.001.data pickup.$nitPick.009.001.data |
| 47 |
mv pickup.ckptA.010.001.data pickup.$nitPick.010.001.data |
| 48 |
mv pickup.ckptA.011.001.data pickup.$nitPick.011.001.data |
| 49 |
mv pickup.ckptA.012.001.data pickup.$nitPick.012.001.data |
| 50 |
mv pickup.ckptA.013.001.data pickup.$nitPick.013.001.data |
| 51 |
mv pickup.ckptA.014.001.data pickup.$nitPick.014.001.data |
| 52 |
mv pickup.ckptA.015.001.data pickup.$nitPick.015.001.data |
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mv pickup.ckptA.016.001.data pickup.$nitPick.016.001.data |
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mv pickup.ckptA.017.001.data pickup.$nitPick.017.001.data |
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mv pickup.ckptA.018.001.data pickup.$nitPick.018.001.data |
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mv pickup.ckptA.019.001.data pickup.$nitPick.019.001.data |
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mv pickup.ckptA.020.001.data pickup.$nitPick.020.001.data |
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mv pickup.ckptA.021.001.data pickup.$nitPick.021.001.data |
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mv pickup.ckptA.022.001.data pickup.$nitPick.022.001.data |
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mv pickup.ckptA.023.001.data pickup.$nitPick.023.001.data |
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mv pickup.ckptA.024.001.data pickup.$nitPick.024.001.data |
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mv pickup.ckptA.001.001.meta pickup.$nitPick.001.001.meta |
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mv pickup.ckptA.002.001.meta pickup.$nitPick.002.001.meta |
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mv pickup.ckptA.003.001.meta pickup.$nitPick.003.001.meta |
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mv pickup.ckptA.004.001.meta pickup.$nitPick.004.001.meta |
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mv pickup.ckptA.005.001.meta pickup.$nitPick.005.001.meta |
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mv pickup.ckptA.006.001.meta pickup.$nitPick.006.001.meta |
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mv pickup.ckptA.007.001.meta pickup.$nitPick.007.001.meta |
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mv pickup.ckptA.008.001.meta pickup.$nitPick.008.001.meta |
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mv pickup.ckptA.009.001.meta pickup.$nitPick.009.001.meta |
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mv pickup.ckptA.010.001.meta pickup.$nitPick.010.001.meta |
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mv pickup.ckptA.011.001.meta pickup.$nitPick.011.001.meta |
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mv pickup.ckptA.012.001.meta pickup.$nitPick.012.001.meta |
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mv pickup.ckptA.013.001.meta pickup.$nitPick.013.001.meta |
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mv pickup.ckptA.014.001.meta pickup.$nitPick.014.001.meta |
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mv pickup.ckptA.015.001.meta pickup.$nitPick.015.001.meta |
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mv pickup.ckptA.016.001.meta pickup.$nitPick.016.001.meta |
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mv pickup.ckptA.017.001.meta pickup.$nitPick.017.001.meta |
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mv pickup.ckptA.018.001.meta pickup.$nitPick.018.001.meta |
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mv pickup.ckptA.019.001.meta pickup.$nitPick.019.001.meta |
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mv pickup.ckptA.020.001.meta pickup.$nitPick.020.001.meta |
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mv pickup.ckptA.021.001.meta pickup.$nitPick.021.001.meta |
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mv pickup.ckptA.022.001.meta pickup.$nitPick.022.001.meta |
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mv pickup.ckptA.023.001.meta pickup.$nitPick.023.001.meta |
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mv pickup.ckptA.024.001.meta pickup.$nitPick.024.001.meta |
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mv pickup_fizhi.ckptA.001.001.data pickup_fizhi.$nitPick.001.001.data |
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mv pickup_fizhi.ckptA.002.001.data pickup_fizhi.$nitPick.002.001.data |
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mv pickup_fizhi.ckptA.003.001.data pickup_fizhi.$nitPick.003.001.data |
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mv pickup_fizhi.ckptA.004.001.data pickup_fizhi.$nitPick.004.001.data |
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mv pickup_fizhi.ckptA.005.001.data pickup_fizhi.$nitPick.005.001.data |
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mv pickup_fizhi.ckptA.006.001.data pickup_fizhi.$nitPick.006.001.data |
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mv pickup_fizhi.ckptA.007.001.data pickup_fizhi.$nitPick.007.001.data |
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mv pickup_fizhi.ckptA.008.001.data pickup_fizhi.$nitPick.008.001.data |
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mv pickup_fizhi.ckptA.009.001.data pickup_fizhi.$nitPick.009.001.data |
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mv pickup_fizhi.ckptA.010.001.data pickup_fizhi.$nitPick.010.001.data |
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mv pickup_fizhi.ckptA.011.001.data pickup_fizhi.$nitPick.011.001.data |
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mv pickup_fizhi.ckptA.012.001.data pickup_fizhi.$nitPick.012.001.data |
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mv pickup_fizhi.ckptA.013.001.data pickup_fizhi.$nitPick.013.001.data |
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mv pickup_fizhi.ckptA.014.001.data pickup_fizhi.$nitPick.014.001.data |
| 100 |
mv pickup_fizhi.ckptA.015.001.data pickup_fizhi.$nitPick.015.001.data |
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mv pickup_fizhi.ckptA.016.001.data pickup_fizhi.$nitPick.016.001.data |
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mv pickup_fizhi.ckptA.017.001.data pickup_fizhi.$nitPick.017.001.data |
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mv pickup_fizhi.ckptA.018.001.data pickup_fizhi.$nitPick.018.001.data |
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mv pickup_fizhi.ckptA.019.001.data pickup_fizhi.$nitPick.019.001.data |
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mv pickup_fizhi.ckptA.020.001.data pickup_fizhi.$nitPick.020.001.data |
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mv pickup_fizhi.ckptA.021.001.data pickup_fizhi.$nitPick.021.001.data |
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mv pickup_fizhi.ckptA.022.001.data pickup_fizhi.$nitPick.022.001.data |
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mv pickup_fizhi.ckptA.023.001.data pickup_fizhi.$nitPick.023.001.data |
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mv pickup_fizhi.ckptA.024.001.data pickup_fizhi.$nitPick.024.001.data |
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mv pickup_fizhi.ckptA.001.001.meta pickup_fizhi.$nitPick.001.001.meta |
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mv pickup_fizhi.ckptA.002.001.meta pickup_fizhi.$nitPick.002.001.meta |
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mv pickup_fizhi.ckptA.003.001.meta pickup_fizhi.$nitPick.003.001.meta |
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mv pickup_fizhi.ckptA.004.001.meta pickup_fizhi.$nitPick.004.001.meta |
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mv pickup_fizhi.ckptA.005.001.meta pickup_fizhi.$nitPick.005.001.meta |
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mv pickup_fizhi.ckptA.006.001.meta pickup_fizhi.$nitPick.006.001.meta |
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mv pickup_fizhi.ckptA.007.001.meta pickup_fizhi.$nitPick.007.001.meta |
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mv pickup_fizhi.ckptA.008.001.meta pickup_fizhi.$nitPick.008.001.meta |
| 118 |
mv pickup_fizhi.ckptA.009.001.meta pickup_fizhi.$nitPick.009.001.meta |
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mv pickup_fizhi.ckptA.010.001.meta pickup_fizhi.$nitPick.010.001.meta |
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mv pickup_fizhi.ckptA.011.001.meta pickup_fizhi.$nitPick.011.001.meta |
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mv pickup_fizhi.ckptA.012.001.meta pickup_fizhi.$nitPick.012.001.meta |
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mv pickup_fizhi.ckptA.013.001.meta pickup_fizhi.$nitPick.013.001.meta |
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mv pickup_fizhi.ckptA.014.001.meta pickup_fizhi.$nitPick.014.001.meta |
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mv pickup_fizhi.ckptA.015.001.meta pickup_fizhi.$nitPick.015.001.meta |
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mv pickup_fizhi.ckptA.016.001.meta pickup_fizhi.$nitPick.016.001.meta |
| 126 |
mv pickup_fizhi.ckptA.017.001.meta pickup_fizhi.$nitPick.017.001.meta |
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mv pickup_fizhi.ckptA.018.001.meta pickup_fizhi.$nitPick.018.001.meta |
| 128 |
mv pickup_fizhi.ckptA.019.001.meta pickup_fizhi.$nitPick.019.001.meta |
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mv pickup_fizhi.ckptA.020.001.meta pickup_fizhi.$nitPick.020.001.meta |
| 130 |
mv pickup_fizhi.ckptA.021.001.meta pickup_fizhi.$nitPick.021.001.meta |
| 131 |
mv pickup_fizhi.ckptA.022.001.meta pickup_fizhi.$nitPick.022.001.meta |
| 132 |
mv pickup_fizhi.ckptA.023.001.meta pickup_fizhi.$nitPick.023.001.meta |
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mv pickup_fizhi.ckptA.024.001.meta pickup_fizhi.$nitPick.024.001.meta |
| 134 |
mv pickup_vegtiles.ckptA.001.001.data pickup_vegtiles.$nitPick.001.001.data |
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mv pickup_vegtiles.ckptA.002.001.data pickup_vegtiles.$nitPick.002.001.data |
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mv pickup_vegtiles.ckptA.003.001.data pickup_vegtiles.$nitPick.003.001.data |
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mv pickup_vegtiles.ckptA.004.001.data pickup_vegtiles.$nitPick.004.001.data |
| 138 |
mv pickup_vegtiles.ckptA.005.001.data pickup_vegtiles.$nitPick.005.001.data |
| 139 |
mv pickup_vegtiles.ckptA.006.001.data pickup_vegtiles.$nitPick.006.001.data |
| 140 |
mv pickup_vegtiles.ckptA.007.001.data pickup_vegtiles.$nitPick.007.001.data |
| 141 |
mv pickup_vegtiles.ckptA.008.001.data pickup_vegtiles.$nitPick.008.001.data |
| 142 |
mv pickup_vegtiles.ckptA.009.001.data pickup_vegtiles.$nitPick.009.001.data |
| 143 |
mv pickup_vegtiles.ckptA.010.001.data pickup_vegtiles.$nitPick.010.001.data |
| 144 |
mv pickup_vegtiles.ckptA.011.001.data pickup_vegtiles.$nitPick.011.001.data |
| 145 |
mv pickup_vegtiles.ckptA.012.001.data pickup_vegtiles.$nitPick.012.001.data |
| 146 |
mv pickup_vegtiles.ckptA.013.001.data pickup_vegtiles.$nitPick.013.001.data |
| 147 |
mv pickup_vegtiles.ckptA.014.001.data pickup_vegtiles.$nitPick.014.001.data |
| 148 |
mv pickup_vegtiles.ckptA.015.001.data pickup_vegtiles.$nitPick.015.001.data |
| 149 |
mv pickup_vegtiles.ckptA.016.001.data pickup_vegtiles.$nitPick.016.001.data |
| 150 |
mv pickup_vegtiles.ckptA.017.001.data pickup_vegtiles.$nitPick.017.001.data |
| 151 |
mv pickup_vegtiles.ckptA.018.001.data pickup_vegtiles.$nitPick.018.001.data |
| 152 |
mv pickup_vegtiles.ckptA.019.001.data pickup_vegtiles.$nitPick.019.001.data |
| 153 |
mv pickup_vegtiles.ckptA.020.001.data pickup_vegtiles.$nitPick.020.001.data |
| 154 |
mv pickup_vegtiles.ckptA.021.001.data pickup_vegtiles.$nitPick.021.001.data |
| 155 |
mv pickup_vegtiles.ckptA.022.001.data pickup_vegtiles.$nitPick.022.001.data |
| 156 |
mv pickup_vegtiles.ckptA.023.001.data pickup_vegtiles.$nitPick.023.001.data |
| 157 |
mv pickup_vegtiles.ckptA.024.001.data pickup_vegtiles.$nitPick.024.001.data |
| 158 |
echo 'Change start iteration number for next run ' |
| 159 |
cp STDOUT.0001 STDOUT.0001-$ite |
| 160 |
sed "s/ nIter0=$its/ nIter0=$ite/" data > data.tmp |
| 161 |
mv data.tmp data |
| 162 |
sleep 5 |
| 163 |
qsub $runDir/runScript.columbia |
| 164 |
else |
| 165 |
echo 'file:' pickup.ckptA.001.001.data 'do not exist !' |
| 166 |
endif |
| 167 |
|
| 168 |
exit |
Parent Directory
| 
Revision Log
| 
Revision Graph