1 |
edhill |
1.1 |
#! /bin/sh |
2 |
|
|
|
3 |
edhill |
1.2 |
# $Header: /u/gcmpack/MITgcm/verification/cpl_aim+ocn/run_cpl_test_itrda,v 1.1 2004/10/27 23:19:43 edhill Exp $ |
4 |
edhill |
1.1 |
# $Name: $ |
5 |
|
|
|
6 |
|
|
Np=3 |
7 |
|
|
if [ $# -lt 1 ] |
8 |
|
|
then |
9 |
|
|
echo 'Usage:'`basename $0`' step ' |
10 |
|
|
echo ' => test coupled set-up on myrinet cluster' |
11 |
|
|
echo 'step = 0 : clean all directories' |
12 |
|
|
echo 'step = 1 : compile the 3 executables (cpl,ocn,atm)' |
13 |
|
|
echo 'step = 2 : copy input files and dir(s)' |
14 |
|
|
echo "step = 3 : run on $Np processor" |
15 |
|
|
echo 'step = 4 : check the results' |
16 |
|
|
exit |
17 |
|
|
fi |
18 |
|
|
kpr=$1 |
19 |
|
|
dir=`pwd` |
20 |
|
|
|
21 |
|
|
#- only works from a 3 nodes PBS bach session ( qsub -I -l nodes=3:p4 ) |
22 |
|
|
# on myrinet cluster: |
23 |
|
|
#xx=`hostname | sed 's/[0-9]/X/g'` |
24 |
|
|
#if test $xx != 'myrinet-X-XX' |
25 |
|
|
#then |
26 |
|
|
# echo ' hostname='`hostname` |
27 |
|
|
# echo 'for now, works only on myrinet cluster' |
28 |
|
|
# exit 9 |
29 |
|
|
#fi |
30 |
|
|
if test 'dummy'$PBS_NODEFILE = 'dummy' |
31 |
|
|
then |
32 |
|
|
echo ' $PBS_NODEFILE not defined' |
33 |
|
|
echo "for now, works only from a $Np nodes PBS bach session" |
34 |
|
|
exit 8 |
35 |
|
|
else ncpus=`wc -l $PBS_NODEFILE | awk '{print $1}'` |
36 |
|
|
if test $ncpus != $Np ; then |
37 |
|
|
echo ' Nb of nodes from $PBS_NODEFILE =' $ncpus |
38 |
|
|
echo "for now, works only from a $Np nodes PBS bach session" |
39 |
|
|
exit 8 |
40 |
|
|
fi |
41 |
|
|
fi |
42 |
|
|
|
43 |
|
|
#============================================================================ |
44 |
|
|
|
45 |
|
|
if test $kpr = 0 |
46 |
|
|
then |
47 |
|
|
rm -f genmake_optfile pr_group std_outp |
48 |
|
|
rm -f build_???/TTT.*make.* build_???/TTT.mkdepend.* |
49 |
|
|
/bin/rm -r -f rank_0 rank_1 rank_2 |
50 |
|
|
if test -f build_cpl/Makefile ; then cd build_cpl ; make CLEAN ; cd .. ; fi |
51 |
|
|
if test -f build_ocn/Makefile ; then cd build_ocn ; make CLEAN ; cd .. ; fi |
52 |
|
|
if test -f build_atm/Makefile ; then cd build_atm ; make CLEAN ; cd .. ; fi |
53 |
|
|
fi |
54 |
|
|
|
55 |
|
|
if test $kpr = 1 |
56 |
|
|
then |
57 |
|
|
|
58 |
edhill |
1.2 |
# cp -p ~/linux_ia32_ifc+mpi_itrda genmake_optfile |
59 |
|
|
# ln -s optfile_g77_itrda genmake_optfile |
60 |
edhill |
1.1 |
echo '==== compile coupler:' |
61 |
|
|
cd build_cpl |
62 |
|
|
echo ' --- genmake2 (cpl):' |
63 |
|
|
../../../tools/genmake2 -of ../genmake_optfile -mpi -ieee > TTT.genmake.$$ |
64 |
|
|
tail -5 TTT.genmake.$$ |
65 |
|
|
echo ' --- make depend (cpl):' |
66 |
|
|
make depend > TTT.mkdepend.$$ |
67 |
|
|
tail -5 TTT.mkdepend.$$ |
68 |
|
|
echo ' --- make (cpl):' |
69 |
|
|
make -j 2 > TTT.make.$$ 2>&1 |
70 |
|
|
tail -10 TTT.make.$$ |
71 |
|
|
echo ' ' ; cd $dir |
72 |
|
|
|
73 |
|
|
echo '==== compile OGCM:' |
74 |
|
|
cd build_ocn |
75 |
|
|
echo ' --- genmake2 (ocn):' |
76 |
|
|
../../../tools/genmake2 -of ../genmake_optfile -mpi -ieee > TTT.genmake.$$ |
77 |
|
|
tail -5 TTT.genmake.$$ |
78 |
|
|
echo ' --- make depend (ocn):' |
79 |
|
|
make depend > TTT.mkdepend.$$ |
80 |
|
|
tail -10 TTT.mkdepend.$$ |
81 |
|
|
echo ' --- make (ocn):' |
82 |
|
|
make -j 2 > TTT.make.$$ 2>&1 |
83 |
|
|
tail -10 TTT.make.$$ |
84 |
|
|
echo ' ' ; cd $dir |
85 |
|
|
|
86 |
|
|
echo '==== compile AGCM:' |
87 |
|
|
cd build_atm |
88 |
|
|
echo ' --- genmake2 (atm):' |
89 |
|
|
../../../tools/genmake2 -of ../genmake_optfile -mpi -ieee > TTT.genmake.$$ |
90 |
|
|
tail -5 TTT.genmake.$$ |
91 |
|
|
echo ' --- make depend (atm):' |
92 |
|
|
make depend > TTT.mkdepend.$$ |
93 |
|
|
tail -10 TTT.mkdepend.$$ |
94 |
|
|
echo ' --- make (atm):' |
95 |
|
|
make -j 2 > TTT.make.$$ 2>&1 |
96 |
|
|
tail -10 TTT.make.$$ |
97 |
|
|
echo ' ' ; cd $dir |
98 |
|
|
|
99 |
|
|
ls -l build_???/mitgcmuv |
100 |
|
|
|
101 |
|
|
fi |
102 |
|
|
|
103 |
|
|
if test $kpr = 2 |
104 |
|
|
then |
105 |
|
|
cp -p -r input_cpl rank_0 |
106 |
|
|
cp -p -r input_ocn rank_1 |
107 |
|
|
cp -p -r input_atm rank_2 |
108 |
|
|
|
109 |
|
|
cd rank_1 |
110 |
|
|
./IMPORT_INPUT_FILES |
111 |
|
|
cd $dir |
112 |
|
|
|
113 |
|
|
cd rank_2 |
114 |
|
|
./SHARE_OCN_GRID '../rank_1' |
115 |
|
|
cd $dir |
116 |
|
|
|
117 |
|
|
rm -rf cpl ocn atm |
118 |
|
|
mkdir cpl ocn atm |
119 |
|
|
if test -f build_cpl/mitgcmuv ; then cp -p build_cpl/mitgcmuv cpl |
120 |
|
|
else echo 'file: build_cpl/mitgcmuv not found => stop'; exit; fi |
121 |
|
|
if test -f build_ocn/mitgcmuv ; then cp -p build_ocn/mitgcmuv ocn |
122 |
|
|
else echo 'file: build_ocn/mitgcmuv not found => stop'; exit; fi |
123 |
|
|
if test -f build_atm/mitgcmuv ; then cp -p build_atm/mitgcmuv atm |
124 |
|
|
else echo 'file: build_atm/mitgcmuv not found => stop'; exit; fi |
125 |
|
|
|
126 |
|
|
fi |
127 |
|
|
|
128 |
|
|
if test $kpr = 3 |
129 |
|
|
then |
130 |
|
|
ROOTDIR=$dir |
131 |
|
|
rm -f rank_?/pickup*.ckptA.00?.00?.??ta |
132 |
|
|
echo $ROOTDIR |
133 |
|
|
tmpfil=TTT.$$ |
134 |
|
|
|
135 |
|
|
echo $PBS_NODEFILE |
136 |
|
|
list=`cat $PBS_NODEFILE` |
137 |
|
|
rm -f pr_group ; touch pr_group |
138 |
|
|
nc=0 ; dd1=cpl ; |
139 |
|
|
for xx in $list |
140 |
|
|
do |
141 |
|
|
echo $xx $nc $dir/build_$dd1/mitgcmuv >> pr_group |
142 |
|
|
if test $nc = 0 ; then dd1=ocn ; else dd1=atm ; fi |
143 |
|
|
nc=1 |
144 |
|
|
done |
145 |
|
|
|
146 |
|
|
cd $ROOTDIR |
147 |
|
|
# /usr/local/pkg/mpi/mpi-1.2.4..8a-gm-1.5/pgi/bin/mpirun.ch_gm -pg pr_group -wd $ROOTDIR --gm-kill 5 -v ./build_cpl/mitgcmuv > std_outp 2>&1 |
148 |
|
|
mpirun -p4pg pr_group -v ./build_cpl/mitgcmuv > std_outp 2>&1 |
149 |
|
|
tail -20 std_outp |
150 |
|
|
ls -l rank_?/pickup*.ckptA.001.001.data |
151 |
|
|
|
152 |
|
|
fi |
153 |
|
|
|
154 |
|
|
if test $kpr = 4 |
155 |
|
|
then |
156 |
|
|
|
157 |
|
|
if test -f rank_1/STDOUT.0000 |
158 |
|
|
then echo '==> check Ocean output:' |
159 |
|
|
/home/jmc/bin/comp_res rank_1/STDOUT.0000 results/ocnSTDOUT.0000 |
160 |
|
|
echo ' ' |
161 |
|
|
else echo 'No Ocean output file in rank_1' ; fi |
162 |
|
|
|
163 |
|
|
if test -f rank_2/STDOUT.0000 |
164 |
|
|
then |
165 |
|
|
echo '==> check Atmos output:' |
166 |
|
|
/home/jmc/bin/comp_res rank_2/STDOUT.0000 results/atmSTDOUT.0000 |
167 |
|
|
echo '==> check Land output:' |
168 |
|
|
/home/jmc/bin/comp_res rank_2/STDOUT.0000 results/atmSTDOUT.0000 L |
169 |
|
|
echo '==> check thSIce output:' |
170 |
|
|
/home/jmc/bin/comp_res rank_2/STDOUT.0000 results/atmSTDOUT.0000 I |
171 |
|
|
echo ' ' |
172 |
|
|
else echo 'No Atmos output file in rank_1' ; fi |
173 |
|
|
|
174 |
|
|
fi |
175 |
|
|
|
176 |
|
|
exit 0 |