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#! /bin/sh |
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|
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# $Header: /u/gcmpack/MITgcm/verification/cpl_aim+ocn/run_cpl_test_itrda,v 1.13 2009/12/26 01:58:17 jmc Exp $ |
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# $Name: $ |
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|
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Np=3 |
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if [ $# -lt 1 ] |
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then |
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echo 'Usage:'`basename $0`' step ' |
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echo ' => test coupled set-up on myrinet cluster' |
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echo 'step = 0 : clean all directories' |
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echo 'step = 1 : compile the 3 executables (cpl,ocn,atm)' |
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echo 'step = 2 : copy input files and dir(s)' |
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echo "step = 3 : run on $Np processor" |
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echo 'step = 4 : check the results' |
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echo 'step = 5 : remove output files in rank_0,1,2 dir.' |
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exit |
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fi |
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kpr=$1 |
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dir=`pwd` |
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|
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#- only works from a 3 (or more) nodes PBS bach session on ACES cluster |
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# (tested on ao) ( qsub -I -l nodes=3 -or- |
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# qsub -I -l nodes=3:ppn=2 ) |
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# need to be on one computer node, |
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# and with the correct module loaded (i.e, one of the 3): |
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# > module load mpich/gnu |
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# > module load mpich/intel netcdf/3.6.1/icc |
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# export MPI_INC_DIR='/usr/local/pkg/mpich/mpich-intel/include/' |
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# > module load mpich/pgi |
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if test 'dummy'$PBS_NODEFILE = 'dummy' |
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then |
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echo ' $PBS_NODEFILE not defined' |
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echo "for now, works only from a (at least) $Np nodes PBS bach session" |
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exit 8 |
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else nprc=`wc -l $PBS_NODEFILE | awk '{print $1}'` |
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if [ $nprc -lt $Np ] ; then |
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echo ' Nb of nodes from $PBS_NODEFILE =' $nprc |
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echo "for now, works only from a (at least) $Np nodes PBS bach session" |
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exit 8 |
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fi |
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fi |
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|
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#============================================================================ |
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|
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if test $kpr = 0 |
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then |
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rm -f pr_group std_outp comp_res.{ocn,atm,land,sice} |
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rm -f build_???/TTT.*make.* build_???/TTT.mkdepend.* |
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/bin/rm -r -f rank_0 rank_1 rank_2 |
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if test -f build_cpl/Makefile ; then cd build_cpl ; make CLEAN ; cd .. ; fi |
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if test -f build_ocn/Makefile ; then cd build_ocn ; make CLEAN ; cd .. ; fi |
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if test -f build_atm/Makefile ; then cd build_atm ; make CLEAN ; cd .. ; fi |
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fi |
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if test $kpr = 5 |
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then |
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echo 'remove output files in rank_0,1,2 dir.' |
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rm -f pr_group std_outp comp_res.{ocn,atm,land,sice} |
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if test -d rank_0 ; then cd rank_0 ; rm -f Coupler.0000.clog ; cd .. ; fi |
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if test -d rank_1 |
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then cd rank_1 ; rm -f *.data *.meta STD???.0000 UV-*.0001.clog ; cd .. ; fi |
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if test -d rank_2 |
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then cd rank_2 ; rm -f *.data *.meta STD???.0000 UV-*.0001.clog ; cd .. ; fi |
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fi |
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|
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if test $kpr = 1 |
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then |
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|
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#- find the optfile that corresponds to the currently loaded mpich module |
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. /etc/profile.d/modules.sh |
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module list -t >& tmp_compiler |
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compiler=`sed -n 's/mpich.*\///p' tmp_compiler` |
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case $compiler in |
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'gnu') OPTFILE="../../tools/build_options/linux_ia32_g77+mpi_aces" ;; |
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'intel') OPTFILE="../../tools/build_options/linux_ia32_ifort+mpi_aces" ;; |
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'pgi') OPTFILE="../../tools/build_options/linux_ia32_pgf77+mpi_aces" ;; |
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*) echo 'ERROR: cannot use compiler:' $compiler ; |
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echo ""; cat tmp_compiler ; exit 7 ;; |
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esac |
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rm -f tmp_compiler |
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echo " Using optfile: $OPTFILE (compiler=$compiler)" |
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xx=`echo $OPTFILE | grep -c '^\/'` |
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if test $xx = 0 ; then OPTFILE="../$OPTFILE" ; fi |
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#--- |
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echo '==== compile coupler:' |
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cd build_cpl |
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echo ' --- genmake2 (cpl):' |
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../../../tools/genmake2 -of $OPTFILE -mpi -ieee > TTT.genmake.$$ |
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tail -5 TTT.genmake.$$ |
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echo ' --- make depend (cpl):' |
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make depend > TTT.mkdepend.$$ |
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tail -5 TTT.mkdepend.$$ |
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echo ' --- make (cpl):' |
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make -j 2 > TTT.make.$$ 2>&1 |
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tail -10 TTT.make.$$ |
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echo ' ' ; cd $dir |
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|
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echo '==== compile OGCM:' |
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cd build_ocn |
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echo ' --- genmake2 (ocn):' |
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../../../tools/genmake2 -of $OPTFILE -mpi -ieee > TTT.genmake.$$ |
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tail -5 TTT.genmake.$$ |
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echo ' --- make depend (ocn):' |
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make depend > TTT.mkdepend.$$ |
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tail -10 TTT.mkdepend.$$ |
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echo ' --- make (ocn):' |
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make -j 2 > TTT.make.$$ 2>&1 |
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tail -10 TTT.make.$$ |
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echo ' ' ; cd $dir |
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|
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echo '==== compile AGCM:' |
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cd build_atm |
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echo ' --- genmake2 (atm):' |
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../../../tools/genmake2 -of $OPTFILE -mpi -ieee > TTT.genmake.$$ |
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tail -5 TTT.genmake.$$ |
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echo ' --- make depend (atm):' |
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make depend > TTT.mkdepend.$$ |
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tail -10 TTT.mkdepend.$$ |
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echo ' --- make (atm):' |
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make -j 2 > TTT.make.$$ 2>&1 |
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tail -10 TTT.make.$$ |
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echo ' ' ; cd $dir |
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|
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ls -l build_???/mitgcmuv |
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|
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fi |
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|
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if test $kpr = 2 |
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then |
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/bin/rm -r -f rank_0 rank_1 rank_2 |
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echo 'CP dir:' input_cpl '->' rank_0 |
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cp -p -r input_cpl rank_0 |
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|
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echo 'CP dir:' input_ocn '->' rank_1 |
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cp -p -r input_ocn rank_1 |
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cd rank_1 |
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./prepare_run |
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cd $dir |
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|
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echo 'CP dir:' input_atm '->' rank_2 |
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cp -p -r input_atm rank_2 |
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cd rank_2 |
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./prepare_run |
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cd $dir |
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|
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fi |
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|
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if test $kpr = 3 |
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then |
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ROOTDIR=$dir |
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rm -f rank_?/pickup*.ckptA.00?.00?.??ta |
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echo $ROOTDIR |
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tmpfil=TTT.$$ |
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|
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echo $PBS_NODEFILE |
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nprc=`cat $PBS_NODEFILE | uniq | wc -l` |
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if [ $nprc -ge $Np ] ; then |
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list=`cat $PBS_NODEFILE | uniq | head -$Np` |
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else |
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list=`cat $PBS_NODEFILE | head -$Np` |
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fi |
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rm -f pr_group ; touch pr_group |
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nc=0 ; dd1=cpl ; |
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for xx in $list |
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do |
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echo $xx $nc $dir/build_$dd1/mitgcmuv >> pr_group |
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if test $nc = 0 ; then dd1=ocn ; else dd1=atm ; fi |
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nc=1 |
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done |
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|
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cd $ROOTDIR |
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# /usr/local/pkg/mpi/mpi-1.2.4..8a-gm-1.5/pgi/bin/mpirun.ch_gm -pg pr_group -wd $ROOTDIR --gm-kill 5 -v ./build_cpl/mitgcmuv > std_outp 2>&1 |
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mpirun -p4pg pr_group -v ./build_cpl/mitgcmuv > std_outp 2>&1 |
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tail -20 std_outp |
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ls -l rank_?/pickup*.ckptA.001.001.data |
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|
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fi |
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|
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if test $kpr = 4 |
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then |
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|
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if test -f rank_1/STDOUT.0000 |
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then echo '==> check Ocean output:' |
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/home/jmc/bin/comp_res rank_1/STDOUT.0000 results/ocnSTDOUT.0000 |
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mv -f comp_res.log comp_res.ocn |
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echo ' ' |
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else echo 'No Ocean output file in rank_1' ; fi |
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|
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if test -f rank_2/STDOUT.0000 |
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then |
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echo '==> check Atmos output:' |
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/home/jmc/bin/comp_res rank_2/STDOUT.0000 results/atmSTDOUT.0000 |
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mv -f comp_res.log comp_res.atm |
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echo '==> check Land output:' |
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/home/jmc/bin/comp_res rank_2/STDOUT.0000 results/atmSTDOUT.0000 L |
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mv -f comp_res.log comp_res.land |
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echo '==> check thSIce output:' |
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/home/jmc/bin/comp_res rank_2/STDOUT.0000 results/atmSTDOUT.0000 I |
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mv -f comp_res.log comp_res.sice |
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echo ' ' |
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else echo 'No Atmos output file in rank_2' ; fi |
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|
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fi |
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|
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exit 0 |
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