1 |
#! /bin/sh |
2 |
|
3 |
# $Header: $ |
4 |
# $Name: $ |
5 |
|
6 |
Np=3 |
7 |
if [ $# -lt 1 ] |
8 |
then |
9 |
echo 'Usage:'`basename $0`' step ' |
10 |
echo ' => test coupled set-up on myrinet cluster' |
11 |
echo 'step = 0 : clean all directories' |
12 |
echo 'step = 1 : compile the 3 executables (cpl,ocn,atm)' |
13 |
echo 'step = 2 : copy input files and dir(s)' |
14 |
echo "step = 3 : run on $Np processor" |
15 |
echo 'step = 4 : check the results' |
16 |
exit |
17 |
fi |
18 |
kpr=$1 |
19 |
dir=`pwd` |
20 |
|
21 |
#- only works from a 3 nodes PBS bach session ( qsub -I -l nodes=3:p4 ) |
22 |
# on myrinet cluster: |
23 |
xx=`hostname | sed 's/[0-9]/X/g'` |
24 |
if test $xx != 'myrinet-X-XX' |
25 |
then |
26 |
echo ' hostname='`hostname` |
27 |
echo 'for now, works only on myrinet cluster' |
28 |
exit 9 |
29 |
fi |
30 |
if test 'dummy'$PBS_NODEFILE = 'dummy' |
31 |
then |
32 |
echo ' $PBS_NODEFILE not defined' |
33 |
echo "for now, works only from a $Np nodes PBS bach session" |
34 |
exit 8 |
35 |
else ncpus=`wc -l $PBS_NODEFILE | awk '{print $1}'` |
36 |
if test $ncpus != $Np ; then |
37 |
echo ' Nb of nodes from $PBS_NODEFILE =' $ncpus |
38 |
echo "for now, works only from a $Np nodes PBS bach session" |
39 |
exit 8 |
40 |
fi |
41 |
fi |
42 |
|
43 |
#============================================================================ |
44 |
|
45 |
if test $kpr = 0 |
46 |
then |
47 |
rm -f genmake_optfile pr_group std_outp |
48 |
rm -f build_???/TTT.*make.* build_???/TTT.mkdepend.* |
49 |
/bin/rm -r -f rank_0 rank_1 rank_2 |
50 |
if test -f build_cpl/Makefile ; then cd build_cpl ; make CLEAN ; cd .. ; fi |
51 |
if test -f build_ocn/Makefile ; then cd build_ocn ; make CLEAN ; cd .. ; fi |
52 |
if test -f build_atm/Makefile ; then cd build_atm ; make CLEAN ; cd .. ; fi |
53 |
fi |
54 |
|
55 |
if test $kpr = 1 |
56 |
then |
57 |
|
58 |
cp -p ../../tools/build_options/linux_ia32_ifc+mpi_cg01 genmake_optfile |
59 |
echo '==== compile coupler:' |
60 |
cd build_cpl |
61 |
echo ' --- genmake2 (cpl):' |
62 |
../../../tools/genmake2 -of ../genmake_optfile -ieee > TTT.genmake.$$ |
63 |
tail -5 TTT.genmake.$$ |
64 |
echo ' --- make depend (cpl):' |
65 |
make depend > TTT.mkdepend.$$ |
66 |
tail -5 TTT.mkdepend.$$ |
67 |
echo ' --- make (cpl):' |
68 |
make > TTT.make.$$ 2>&1 |
69 |
tail -10 TTT.make.$$ |
70 |
echo ' ' ; cd $dir |
71 |
|
72 |
echo '==== compile OGCM:' |
73 |
cd build_ocn |
74 |
echo ' --- genmake2 (ocn):' |
75 |
../../../tools/genmake2 -of ../genmake_optfile -ieee > TTT.genmake.$$ |
76 |
tail -5 TTT.genmake.$$ |
77 |
echo ' --- make depend (ocn):' |
78 |
make depend > TTT.mkdepend.$$ |
79 |
tail -10 TTT.mkdepend.$$ |
80 |
echo ' --- make (ocn):' |
81 |
make > TTT.make.$$ 2>&1 |
82 |
tail -10 TTT.make.$$ |
83 |
echo ' ' ; cd $dir |
84 |
|
85 |
echo '==== compile AGCM:' |
86 |
cd build_atm |
87 |
echo ' --- genmake2 (atm):' |
88 |
../../../tools/genmake2 -of ../genmake_optfile -ieee > TTT.genmake.$$ |
89 |
tail -5 TTT.genmake.$$ |
90 |
echo ' --- make depend (atm):' |
91 |
make depend > TTT.mkdepend.$$ |
92 |
tail -10 TTT.mkdepend.$$ |
93 |
echo ' --- make (atm):' |
94 |
make > TTT.make.$$ 2>&1 |
95 |
tail -10 TTT.make.$$ |
96 |
echo ' ' ; cd $dir |
97 |
|
98 |
ls -l build_???/mitgcmuv |
99 |
|
100 |
fi |
101 |
|
102 |
if test $kpr = 2 |
103 |
then |
104 |
cp -p -r input_cpl rank_0 |
105 |
cp -p -r input_ocn rank_1 |
106 |
cp -p -r input_atm rank_2 |
107 |
|
108 |
cd rank_1 |
109 |
./IMPORT_INPUT_FILES |
110 |
cd $dir |
111 |
|
112 |
cd rank_2 |
113 |
./SHARE_OCN_GRID '../rank_1' |
114 |
cd $dir |
115 |
|
116 |
mkdir cpl ocn atm |
117 |
if test -f build_cpl/mitgcmuv ; then cp -p build_cpl/mitgcmuv cpl |
118 |
else echo 'file: build_cpl/mitgcmuv not found => stop'; exit; fi |
119 |
if test -f build_ocn/mitgcmuv ; then cp -p build_ocn/mitgcmuv ocn |
120 |
else echo 'file: build_ocn/mitgcmuv not found => stop'; exit; fi |
121 |
if test -f build_atm/mitgcmuv ; then cp -p build_atm/mitgcmuv atm |
122 |
else echo 'file: build_atm/mitgcmuv not found => stop'; exit; fi |
123 |
|
124 |
fi |
125 |
|
126 |
if test $kpr = 3 |
127 |
then |
128 |
ROOTDIR=$dir |
129 |
rm -f rank_?/pickup*.ckptA.00?.00?.??ta |
130 |
echo $ROOTDIR |
131 |
tmpfil=TTT.$$ |
132 |
|
133 |
echo $PBS_NODEFILE |
134 |
list=`cat $PBS_NODEFILE` |
135 |
rm -f pr_group ; touch pr_group |
136 |
nc=0 ; dd1=cpl ; |
137 |
for xx in $list |
138 |
do |
139 |
echo $xx $nc $dir/build_$dd1/mitgcmuv >> pr_group |
140 |
if test $nc = 0 ; then dd1=ocn ; else dd1=atm ; fi |
141 |
nc=1 |
142 |
done |
143 |
|
144 |
cd $ROOTDIR |
145 |
/usr/local/pkg/mpi/mpi-1.2.4..8a-gm-1.5/pgi/bin/mpirun.ch_gm -pg pr_group -wd $ROOTDIR --gm-kill 5 -v ./build_cpl/mitgcmuv > std_outp 2>&1 |
146 |
tail -20 std_outp |
147 |
ls -l rank_?/pickup*.ckptA.001.001.data |
148 |
|
149 |
fi |
150 |
|
151 |
if test $kpr = 4 |
152 |
then |
153 |
|
154 |
if test -f rank_1/STDOUT.0000 |
155 |
then echo '==> check Ocean output:' |
156 |
/home/jmc/bin/comp_res rank_1/STDOUT.0000 results/ocnSTDOUT.0000 |
157 |
echo ' ' |
158 |
else echo 'No Ocean output file in rank_1' ; fi |
159 |
|
160 |
if test -f rank_2/STDOUT.0000 |
161 |
then |
162 |
echo '==> check Atmos output:' |
163 |
/home/jmc/bin/comp_res rank_2/STDOUT.0000 results/atmSTDOUT.0000 |
164 |
echo '==> check Land output:' |
165 |
/home/jmc/bin/comp_res rank_2/STDOUT.0000 results/atmSTDOUT.0000 L |
166 |
echo '==> check thSIce output:' |
167 |
/home/jmc/bin/comp_res rank_2/STDOUT.0000 results/atmSTDOUT.0000 I |
168 |
echo ' ' |
169 |
else echo 'No Atmos output file in rank_1' ; fi |
170 |
|
171 |
fi |
172 |
|
173 |
exit 0 |