1 |
jmc |
1.1 |
#! /bin/sh |
2 |
|
|
|
3 |
jmc |
1.15 |
# $Header: /u/gcmpack/MITgcm/verification/cpl_aim+ocn/run_cpl_test,v 1.14 2009/12/26 23:44:03 jmc Exp $ |
4 |
jmc |
1.1 |
# $Name: $ |
5 |
|
|
|
6 |
|
|
Np=3 |
7 |
jmc |
1.14 |
#- parse options: |
8 |
jmc |
1.13 |
MTH= |
9 |
|
|
MTHo= |
10 |
|
|
MTHa= |
11 |
jmc |
1.15 |
if [ $# -ge 1 ] ; then if test $1 = '-mth' ; then |
12 |
jmc |
1.14 |
MTH='-omp' ; shift |
13 |
|
|
if test -f input_ocn/eedata.mth ; then MTHo=$MTH ; fi |
14 |
|
|
if test -f input_atm/eedata.mth ; then MTHa=$MTH ; fi |
15 |
jmc |
1.15 |
fi ; fi |
16 |
jmc |
1.14 |
if [ $# -ne 1 ] |
17 |
jmc |
1.1 |
then |
18 |
jmc |
1.14 |
echo 'Usage:'`basename $0`' [opt] step' |
19 |
jmc |
1.10 |
echo ' => test coupled set-up on linux box (1.cpu)' |
20 |
jmc |
1.14 |
echo 'opt = -mth : compile and run (if eedata.mth) 2-threads for ocn & atm' |
21 |
|
|
echo ' step = 0 : clean all directories' |
22 |
|
|
echo ' step = 1 : compile the 3 executables (cpl,ocn,atm)' |
23 |
|
|
echo ' step = 2 : copy input files and dir(s)' |
24 |
|
|
echo " step = 3 : run with $Np mpi processes" |
25 |
|
|
echo ' step = 4 : check the results' |
26 |
|
|
echo ' step = 5 : remove output files in rank_0,1,2 dir.' |
27 |
jmc |
1.1 |
exit |
28 |
|
|
fi |
29 |
|
|
kpr=$1 |
30 |
|
|
dir=`pwd` |
31 |
|
|
|
32 |
|
|
#============================================================================ |
33 |
|
|
|
34 |
|
|
if test $kpr = 0 |
35 |
|
|
then |
36 |
jmc |
1.11 |
rm -f pr_group std_outp comp_res.{ocn,atm,land,sice} |
37 |
jmc |
1.1 |
rm -f build_???/TTT.*make.* build_???/TTT.mkdepend.* |
38 |
|
|
/bin/rm -r -f rank_0 rank_1 rank_2 |
39 |
|
|
if test -f build_cpl/Makefile ; then cd build_cpl ; make CLEAN ; cd .. ; fi |
40 |
|
|
if test -f build_ocn/Makefile ; then cd build_ocn ; make CLEAN ; cd .. ; fi |
41 |
|
|
if test -f build_atm/Makefile ; then cd build_atm ; make CLEAN ; cd .. ; fi |
42 |
|
|
fi |
43 |
jmc |
1.8 |
if test $kpr = 5 |
44 |
|
|
then |
45 |
|
|
echo 'remove output files in rank_0,1,2 dir.' |
46 |
jmc |
1.11 |
rm -f pr_group std_outp comp_res.{ocn,atm,land,sice} |
47 |
jmc |
1.8 |
if test -d rank_0 ; then cd rank_0 ; rm -f Coupler.0000.clog ; cd .. ; fi |
48 |
|
|
if test -d rank_1 |
49 |
|
|
then cd rank_1 ; rm -f *.data *.meta STD???.0000 UV-*.0001.clog ; cd .. ; fi |
50 |
|
|
if test -d rank_2 |
51 |
|
|
then cd rank_2 ; rm -f *.data *.meta STD???.0000 UV-*.0001.clog ; cd .. ; fi |
52 |
|
|
fi |
53 |
jmc |
1.1 |
|
54 |
|
|
if test $kpr = 1 |
55 |
|
|
then |
56 |
|
|
|
57 |
jmc |
1.12 |
#- choice of the optfile: take a local one in dir verification with sufix '+mpi' |
58 |
|
|
nbOpF=`ls ../linux_*+mpi 2> /dev/null | wc -l` |
59 |
jmc |
1.10 |
if test $nbOpF = 1 |
60 |
|
|
then |
61 |
jmc |
1.12 |
OPTFILE=`ls ../linux_*+mpi` |
62 |
jmc |
1.11 |
zz=`grep '^FC=' $OPTFILE` |
63 |
jmc |
1.13 |
echo " Using optfile: $OPTFILE (compiler=$zz) $MTH" |
64 |
jmc |
1.10 |
else echo 'Pb in finding optfile' ; exit; |
65 |
|
|
fi |
66 |
jmc |
1.11 |
zz=`echo $OPTFILE | grep -c '^\/'` |
67 |
|
|
if test $zz = 0 ; then OPTFILE="../$OPTFILE" ; fi |
68 |
jmc |
1.10 |
#--- |
69 |
jmc |
1.1 |
echo '==== compile coupler:' |
70 |
|
|
cd build_cpl |
71 |
|
|
echo ' --- genmake2 (cpl):' |
72 |
jmc |
1.11 |
../../../tools/genmake2 -of $OPTFILE -mpi -ieee > TTT.genmake.$$ |
73 |
jmc |
1.1 |
tail -5 TTT.genmake.$$ |
74 |
|
|
echo ' --- make depend (cpl):' |
75 |
|
|
make depend > TTT.mkdepend.$$ |
76 |
|
|
tail -5 TTT.mkdepend.$$ |
77 |
|
|
echo ' --- make (cpl):' |
78 |
|
|
make > TTT.make.$$ 2>&1 |
79 |
|
|
tail -10 TTT.make.$$ |
80 |
|
|
echo ' ' ; cd $dir |
81 |
|
|
|
82 |
|
|
echo '==== compile OGCM:' |
83 |
|
|
cd build_ocn |
84 |
|
|
echo ' --- genmake2 (ocn):' |
85 |
jmc |
1.13 |
../../../tools/genmake2 -of $OPTFILE -mpi $MTHo -ieee > TTT.genmake.$$ |
86 |
jmc |
1.1 |
tail -5 TTT.genmake.$$ |
87 |
|
|
echo ' --- make depend (ocn):' |
88 |
|
|
make depend > TTT.mkdepend.$$ |
89 |
|
|
tail -10 TTT.mkdepend.$$ |
90 |
|
|
echo ' --- make (ocn):' |
91 |
|
|
make > TTT.make.$$ 2>&1 |
92 |
|
|
tail -10 TTT.make.$$ |
93 |
|
|
echo ' ' ; cd $dir |
94 |
|
|
|
95 |
|
|
echo '==== compile AGCM:' |
96 |
|
|
cd build_atm |
97 |
|
|
echo ' --- genmake2 (atm):' |
98 |
jmc |
1.13 |
../../../tools/genmake2 -of $OPTFILE -mpi $MTHa -ieee > TTT.genmake.$$ |
99 |
jmc |
1.1 |
tail -5 TTT.genmake.$$ |
100 |
|
|
echo ' --- make depend (atm):' |
101 |
|
|
make depend > TTT.mkdepend.$$ |
102 |
|
|
tail -10 TTT.mkdepend.$$ |
103 |
|
|
echo ' --- make (atm):' |
104 |
|
|
make > TTT.make.$$ 2>&1 |
105 |
|
|
tail -10 TTT.make.$$ |
106 |
|
|
echo ' ' ; cd $dir |
107 |
|
|
|
108 |
|
|
ls -l build_???/mitgcmuv |
109 |
|
|
|
110 |
|
|
fi |
111 |
|
|
|
112 |
|
|
if test $kpr = 2 |
113 |
|
|
then |
114 |
jmc |
1.7 |
/bin/rm -r -f rank_0 rank_1 rank_2 |
115 |
jmc |
1.9 |
echo 'CP dir:' input_cpl '->' rank_0 |
116 |
jmc |
1.1 |
cp -p -r input_cpl rank_0 |
117 |
jmc |
1.9 |
|
118 |
|
|
echo 'CP dir:' input_ocn '->' rank_1 |
119 |
jmc |
1.1 |
cp -p -r input_ocn rank_1 |
120 |
|
|
cd rank_1 |
121 |
jmc |
1.9 |
./prepare_run |
122 |
jmc |
1.13 |
if test "x$MTHo" != x ; then |
123 |
|
|
echo " MTH run: mv -f eedata.mth eedata" |
124 |
|
|
mv -f eedata.mth eedata |
125 |
|
|
fi |
126 |
jmc |
1.1 |
cd $dir |
127 |
|
|
|
128 |
jmc |
1.9 |
echo 'CP dir:' input_atm '->' rank_2 |
129 |
|
|
cp -p -r input_atm rank_2 |
130 |
jmc |
1.1 |
cd rank_2 |
131 |
jmc |
1.9 |
./prepare_run |
132 |
jmc |
1.13 |
if test "x$MTHa" != x ; then |
133 |
|
|
echo " MTH run: mv -f eedata.mth eedata" |
134 |
|
|
mv -f eedata.mth eedata |
135 |
|
|
fi |
136 |
jmc |
1.1 |
cd $dir |
137 |
|
|
|
138 |
|
|
fi |
139 |
|
|
|
140 |
|
|
if test $kpr = 3 |
141 |
|
|
then |
142 |
|
|
ROOTDIR=$dir |
143 |
|
|
rm -f rank_?/pickup*.ckptA.00?.00?.??ta |
144 |
|
|
echo $ROOTDIR |
145 |
|
|
tmpfil=TTT.$$ |
146 |
|
|
|
147 |
|
|
rm -f pr_group ; touch pr_group |
148 |
jmc |
1.10 |
nc=0; xx=`hostname` |
149 |
|
|
for dd1 in cpl ocn atm |
150 |
jmc |
1.1 |
do |
151 |
|
|
echo $xx $nc $dir/build_$dd1/mitgcmuv >> pr_group |
152 |
|
|
nc=1 |
153 |
|
|
done |
154 |
|
|
|
155 |
|
|
cd $ROOTDIR |
156 |
jmc |
1.13 |
if test "x$MTH" != x ; then |
157 |
|
|
export OMP_NUM_THREADS=2 ; export KMP_STACKSIZE=400m |
158 |
|
|
if test "x$MTHo" != x ; then |
159 |
|
|
echo -n " run OCN ($MTHo) with $OMP_NUM_THREADS threads ;" |
160 |
|
|
fi |
161 |
|
|
if test "x$MTHa" != x ; then |
162 |
|
|
echo -n " run ATM ($MTHa) with $OMP_NUM_THREADS threads ;" |
163 |
|
|
fi |
164 |
|
|
echo "" |
165 |
|
|
fi |
166 |
jmc |
1.10 |
# /usr/local/pkg/mpi/mpi-1.2.4..8a-gm-1.5/pgi/bin/mpirun.ch_gm -pg pr_group -wd $ROOTDIR --gm-kill 5 -v ./build_cpl/mitgcmuv > std_outp 2>&1 |
167 |
|
|
mpirun -p4pg pr_group -v ./build_cpl/mitgcmuv > std_outp 2>&1 |
168 |
jmc |
1.1 |
tail -20 std_outp |
169 |
|
|
ls -l rank_?/pickup*.ckptA.001.001.data |
170 |
|
|
|
171 |
|
|
fi |
172 |
|
|
|
173 |
|
|
if test $kpr = 4 |
174 |
|
|
then |
175 |
|
|
|
176 |
|
|
if test -f rank_1/STDOUT.0000 |
177 |
|
|
then echo '==> check Ocean output:' |
178 |
|
|
/home/jmc/bin/comp_res rank_1/STDOUT.0000 results/ocnSTDOUT.0000 |
179 |
jmc |
1.10 |
mv -f comp_res.log comp_res.ocn |
180 |
|
|
echo ' ' |
181 |
jmc |
1.1 |
else echo 'No Ocean output file in rank_1' ; fi |
182 |
|
|
|
183 |
|
|
if test -f rank_2/STDOUT.0000 |
184 |
|
|
then |
185 |
|
|
echo '==> check Atmos output:' |
186 |
|
|
/home/jmc/bin/comp_res rank_2/STDOUT.0000 results/atmSTDOUT.0000 |
187 |
jmc |
1.10 |
mv -f comp_res.log comp_res.atm |
188 |
jmc |
1.1 |
echo '==> check Land output:' |
189 |
|
|
/home/jmc/bin/comp_res rank_2/STDOUT.0000 results/atmSTDOUT.0000 L |
190 |
jmc |
1.10 |
mv -f comp_res.log comp_res.land |
191 |
jmc |
1.1 |
echo '==> check thSIce output:' |
192 |
|
|
/home/jmc/bin/comp_res rank_2/STDOUT.0000 results/atmSTDOUT.0000 I |
193 |
jmc |
1.10 |
mv -f comp_res.log comp_res.sice |
194 |
|
|
echo ' ' |
195 |
jmc |
1.13 |
else echo 'No Atmos output file in rank_2' ; fi |
196 |
jmc |
1.1 |
|
197 |
|
|
fi |
198 |
|
|
|
199 |
|
|
exit 0 |