Annotation of /MITgcm/verification/cpl_aim+ocn/run_cpl_test

#! /bin/sh

# $Header: /u/gcmpack/MITgcm/verification/cpl_aim+ocn/run_cpl_test,v 1.12 2009/04/29 19:25:29 jmc Exp $
# $Name:  $

Np=3
MTH=
MTHo=
MTHa=
if [ $# -lt 1 ]
then
  echo 'Usage:'`basename $0`' step [-mth]'
  echo ' => test coupled set-up on linux box (1.cpu)'
  echo 'step = 0 : clean all directories'
  echo 'step = 1 : compile the 3 executables (cpl,ocn,atm)'
  echo 'step = 2 : copy input files and dir(s)'
  echo "step = 3 : run with $Np mpi processes"
  echo 'step = 4 : check the results'
  echo 'step = 5 : remove output files in rank_0,1,2 dir.'
  echo '  -mth   : compile and run 2 threads for ocn & atm'
  exit
elif [ $# -eq 2 ] ; then
  if test $2 = '-mth' ; then
    MTH='-omp'
    if test -f input_ocn/eedata.mth ; then MTHo=$MTH ; fi
    if test -f input_atm/eedata.mth ; then MTHa=$MTH ; fi
  fi
fi
kpr=$1
dir=`pwd`

#============================================================================

if test $kpr = 0
then
 rm -f pr_group std_outp comp_res.{ocn,atm,land,sice}
 rm -f build_???/TTT.*make.* build_???/TTT.mkdepend.*
 /bin/rm -r -f rank_0 rank_1 rank_2
 if test -f build_cpl/Makefile ; then cd build_cpl ; make CLEAN ; cd .. ; fi
 if test -f build_ocn/Makefile ; then cd build_ocn ; make CLEAN ; cd .. ; fi
 if test -f build_atm/Makefile ; then cd build_atm ; make CLEAN ; cd .. ; fi
fi
if test $kpr = 5
then
 echo 'remove output files in rank_0,1,2 dir.'
 rm -f pr_group std_outp comp_res.{ocn,atm,land,sice}
 if test -d rank_0 ; then cd rank_0 ; rm -f Coupler.0000.clog ; cd .. ; fi
 if test -d rank_1
 then cd rank_1 ; rm -f *.data *.meta STD???.0000 UV-*.0001.clog ; cd .. ; fi
 if test -d rank_2
 then cd rank_2 ; rm -f *.data *.meta STD???.0000 UV-*.0001.clog ; cd .. ; fi
fi

if test $kpr = 1
then

#- choice of the optfile: take a local one in dir verification with sufix '+mpi'
 nbOpF=`ls ../linux_*+mpi 2> /dev/null | wc -l`
 if test $nbOpF = 1
 then 
   OPTFILE=`ls ../linux_*+mpi`
   zz=`grep '^FC=' $OPTFILE`
   echo " Using optfile: $OPTFILE  (compiler=$zz) $MTH"
 else echo 'Pb in finding optfile' ; exit;
 fi
 zz=`echo $OPTFILE | grep -c '^\/'`
 if test $zz = 0 ; then OPTFILE="../$OPTFILE" ; fi
#---
 echo '==== compile coupler:'
 cd build_cpl
 echo ' --- genmake2 (cpl):'
 ../../../tools/genmake2 -of $OPTFILE -mpi -ieee >  TTT.genmake.$$
 tail -5 TTT.genmake.$$
 echo ' --- make depend (cpl):'
 make depend > TTT.mkdepend.$$
 tail -5 TTT.mkdepend.$$
 echo ' --- make (cpl):'
 make > TTT.make.$$ 2>&1
 tail -10 TTT.make.$$
 echo ' ' ; cd $dir

 echo '==== compile OGCM:'
 cd build_ocn
 echo ' --- genmake2 (ocn):'
 ../../../tools/genmake2 -of $OPTFILE -mpi $MTHo -ieee >  TTT.genmake.$$
 tail -5 TTT.genmake.$$
 echo ' --- make depend (ocn):'
 make depend > TTT.mkdepend.$$
 tail -10 TTT.mkdepend.$$
 echo ' --- make (ocn):'
 make > TTT.make.$$ 2>&1
 tail -10 TTT.make.$$
 echo ' ' ; cd $dir

 echo '==== compile AGCM:'
 cd build_atm
 echo ' --- genmake2 (atm):'
 ../../../tools/genmake2 -of $OPTFILE -mpi $MTHa -ieee >  TTT.genmake.$$
 tail -5 TTT.genmake.$$
 echo ' --- make depend (atm):'
 make depend > TTT.mkdepend.$$
 tail -10 TTT.mkdepend.$$
 echo ' --- make (atm):'
 make > TTT.make.$$ 2>&1
 tail -10 TTT.make.$$
 echo ' ' ; cd $dir

 ls -l build_???/mitgcmuv

fi

if test $kpr = 2
then
  /bin/rm -r -f rank_0 rank_1 rank_2
  echo 'CP dir:' input_cpl '->' rank_0
  cp -p -r input_cpl rank_0

  echo 'CP dir:' input_ocn '->' rank_1
  cp -p -r input_ocn rank_1
  cd rank_1
  ./prepare_run
  if test "x$MTHo" != x ; then
    echo " MTH run: mv -f eedata.mth eedata"
    mv -f eedata.mth eedata
  fi
  cd $dir

  echo 'CP dir:' input_atm '->' rank_2
  cp -p -r input_atm rank_2
  cd rank_2
  ./prepare_run
  if test "x$MTHa" != x ; then
    echo " MTH run: mv -f eedata.mth eedata"
    mv -f eedata.mth eedata
  fi
  cd $dir

fi

if test $kpr = 3
then
 ROOTDIR=$dir
 rm -f rank_?/pickup*.ckptA.00?.00?.??ta
 echo $ROOTDIR
 tmpfil=TTT.$$

 rm -f pr_group ; touch pr_group 
 nc=0; xx=`hostname`
 for dd1 in cpl ocn atm
 do
  echo $xx $nc $dir/build_$dd1/mitgcmuv >> pr_group
  nc=1
 done

 cd $ROOTDIR
 if test "x$MTH" != x ; then
   export OMP_NUM_THREADS=2 ; export KMP_STACKSIZE=400m
   if test "x$MTHo" != x ; then
     echo -n " run OCN ($MTHo) with $OMP_NUM_THREADS threads ;"
   fi
   if test "x$MTHa" != x ; then
     echo -n " run ATM ($MTHa) with $OMP_NUM_THREADS threads ;"
   fi
   echo ""
 fi
# /usr/local/pkg/mpi/mpi-1.2.4..8a-gm-1.5/pgi/bin/mpirun.ch_gm -pg pr_group -wd $ROOTDIR --gm-kill 5 -v  ./build_cpl/mitgcmuv > std_outp 2>&1
 mpirun -p4pg pr_group -v ./build_cpl/mitgcmuv > std_outp 2>&1
 tail -20 std_outp
 ls -l rank_?/pickup*.ckptA.001.001.data

fi

if test $kpr = 4
then

 if test -f rank_1/STDOUT.0000
 then echo '==> check Ocean output:'
    /home/jmc/bin/comp_res rank_1/STDOUT.0000 results/ocnSTDOUT.0000
    mv -f comp_res.log comp_res.ocn
    echo ' '
 else echo 'No Ocean output file in rank_1' ; fi

 if test -f rank_2/STDOUT.0000
 then 
    echo '==> check Atmos output:'
    /home/jmc/bin/comp_res rank_2/STDOUT.0000 results/atmSTDOUT.0000
    mv -f comp_res.log comp_res.atm
    echo '==> check Land output:'
    /home/jmc/bin/comp_res rank_2/STDOUT.0000 results/atmSTDOUT.0000 L
    mv -f comp_res.log comp_res.land
    echo '==> check thSIce output:'
    /home/jmc/bin/comp_res rank_2/STDOUT.0000 results/atmSTDOUT.0000 I
    mv -f comp_res.log comp_res.sice
    echo ' '
 else echo 'No Atmos output file in rank_2' ; fi

fi

exit 0
1	jmc	1.1	#! /bin/sh
2
3	jmc	1.13	# $Header: /u/gcmpack/MITgcm/verification/cpl_aim+ocn/run_cpl_test,v 1.12 2009/04/29 19:25:29 jmc Exp $
4	jmc	1.1	# $Name: $
5
6			Np=3
7	jmc	1.13	MTH=
8			MTHo=
9			MTHa=
10	jmc	1.1	if [ $# -lt 1 ]
11			then
12	jmc	1.13	echo 'Usage:'`basename $0`' step [-mth]'
13	jmc	1.10	echo ' => test coupled set-up on linux box (1.cpu)'
14	jmc	1.1	echo 'step = 0 : clean all directories'
15			echo 'step = 1 : compile the 3 executables (cpl,ocn,atm)'
16			echo 'step = 2 : copy input files and dir(s)'
17	jmc	1.10	echo "step = 3 : run with $Np mpi processes"
18	jmc	1.1	echo 'step = 4 : check the results'
19	jmc	1.8	echo 'step = 5 : remove output files in rank_0,1,2 dir.'
20	jmc	1.13	echo ' -mth : compile and run 2 threads for ocn & atm'
21	jmc	1.1	exit
22	jmc	1.13	elif [ $# -eq 2 ] ; then
23			if test $2 = '-mth' ; then
24			MTH='-omp'
25			if test -f input_ocn/eedata.mth ; then MTHo=$MTH ; fi
26			if test -f input_atm/eedata.mth ; then MTHa=$MTH ; fi
27			fi
28	jmc	1.1	fi
29			kpr=$1
30			dir=`pwd`
31
32			#============================================================================
33
34			if test $kpr = 0
35			then
36	jmc	1.11	rm -f pr_group std_outp comp_res.{ocn,atm,land,sice}
37	jmc	1.1	rm -f build_???/TTT.make. build_???/TTT.mkdepend.*
38			/bin/rm -r -f rank_0 rank_1 rank_2
39			if test -f build_cpl/Makefile ; then cd build_cpl ; make CLEAN ; cd .. ; fi
40			if test -f build_ocn/Makefile ; then cd build_ocn ; make CLEAN ; cd .. ; fi
41			if test -f build_atm/Makefile ; then cd build_atm ; make CLEAN ; cd .. ; fi
42			fi
43	jmc	1.8	if test $kpr = 5
44			then
45			echo 'remove output files in rank_0,1,2 dir.'
46	jmc	1.11	rm -f pr_group std_outp comp_res.{ocn,atm,land,sice}
47	jmc	1.8	if test -d rank_0 ; then cd rank_0 ; rm -f Coupler.0000.clog ; cd .. ; fi
48			if test -d rank_1
49			then cd rank_1 ; rm -f .data .meta STD???.0000 UV-*.0001.clog ; cd .. ; fi
50			if test -d rank_2
51			then cd rank_2 ; rm -f .data .meta STD???.0000 UV-*.0001.clog ; cd .. ; fi
52			fi
53	jmc	1.1
54			if test $kpr = 1
55			then
56
57	jmc	1.12	#- choice of the optfile: take a local one in dir verification with sufix '+mpi'
58			nbOpF=`ls ../linux_*+mpi 2> /dev/null \| wc -l`
59	jmc	1.10	if test $nbOpF = 1
60			then
61	jmc	1.12	OPTFILE=`ls ../linux_*+mpi`
62	jmc	1.11	zz=`grep '^FC=' $OPTFILE`
63	jmc	1.13	echo " Using optfile: $OPTFILE (compiler=$zz) $MTH"
64	jmc	1.10	else echo 'Pb in finding optfile' ; exit;
65			fi
66	jmc	1.11	zz=`echo $OPTFILE \| grep -c '^\/'`
67			if test $zz = 0 ; then OPTFILE="../$OPTFILE" ; fi
68	jmc	1.10	#---
69	jmc	1.1	echo '==== compile coupler:'
70			cd build_cpl
71			echo ' --- genmake2 (cpl):'
72	jmc	1.11	../../../tools/genmake2 -of $OPTFILE -mpi -ieee > TTT.genmake.$$
73	jmc	1.1	tail -5 TTT.genmake.$$
74			echo ' --- make depend (cpl):'
75			make depend > TTT.mkdepend.$$
76			tail -5 TTT.mkdepend.$$
77			echo ' --- make (cpl):'
78			make > TTT.make.$$ 2>&1
79			tail -10 TTT.make.$$
80			echo ' ' ; cd $dir
81
82			echo '==== compile OGCM:'
83			cd build_ocn
84			echo ' --- genmake2 (ocn):'
85	jmc	1.13	../../../tools/genmake2 -of $OPTFILE -mpi $MTHo -ieee > TTT.genmake.$$
86	jmc	1.1	tail -5 TTT.genmake.$$
87			echo ' --- make depend (ocn):'
88			make depend > TTT.mkdepend.$$
89			tail -10 TTT.mkdepend.$$
90			echo ' --- make (ocn):'
91			make > TTT.make.$$ 2>&1
92			tail -10 TTT.make.$$
93			echo ' ' ; cd $dir
94
95			echo '==== compile AGCM:'
96			cd build_atm
97			echo ' --- genmake2 (atm):'
98	jmc	1.13	../../../tools/genmake2 -of $OPTFILE -mpi $MTHa -ieee > TTT.genmake.$$
99	jmc	1.1	tail -5 TTT.genmake.$$
100			echo ' --- make depend (atm):'
101			make depend > TTT.mkdepend.$$
102			tail -10 TTT.mkdepend.$$
103			echo ' --- make (atm):'
104			make > TTT.make.$$ 2>&1
105			tail -10 TTT.make.$$
106			echo ' ' ; cd $dir
107
108			ls -l build_???/mitgcmuv
109
110			fi
111
112			if test $kpr = 2
113			then
114	jmc	1.7	/bin/rm -r -f rank_0 rank_1 rank_2
115	jmc	1.9	echo 'CP dir:' input_cpl '->' rank_0
116	jmc	1.1	cp -p -r input_cpl rank_0
117	jmc	1.9
118			echo 'CP dir:' input_ocn '->' rank_1
119	jmc	1.1	cp -p -r input_ocn rank_1
120			cd rank_1
121	jmc	1.9	./prepare_run
122	jmc	1.13	if test "x$MTHo" != x ; then
123			echo " MTH run: mv -f eedata.mth eedata"
124			mv -f eedata.mth eedata
125			fi
126	jmc	1.1	cd $dir
127
128	jmc	1.9	echo 'CP dir:' input_atm '->' rank_2
129			cp -p -r input_atm rank_2
130	jmc	1.1	cd rank_2
131	jmc	1.9	./prepare_run
132	jmc	1.13	if test "x$MTHa" != x ; then
133			echo " MTH run: mv -f eedata.mth eedata"
134			mv -f eedata.mth eedata
135			fi
136	jmc	1.1	cd $dir
137
138			fi
139
140			if test $kpr = 3
141			then
142			ROOTDIR=$dir
143			rm -f rank_?/pickup*.ckptA.00?.00?.??ta
144			echo $ROOTDIR
145			tmpfil=TTT.$$
146
147			rm -f pr_group ; touch pr_group
148	jmc	1.10	nc=0; xx=`hostname`
149			for dd1 in cpl ocn atm
150	jmc	1.1	do
151			echo $xx $nc $dir/build_$dd1/mitgcmuv >> pr_group
152			nc=1
153			done
154
155			cd $ROOTDIR
156	jmc	1.13	if test "x$MTH" != x ; then
157			export OMP_NUM_THREADS=2 ; export KMP_STACKSIZE=400m
158			if test "x$MTHo" != x ; then
159			echo -n " run OCN ($MTHo) with $OMP_NUM_THREADS threads ;"
160			fi
161			if test "x$MTHa" != x ; then
162			echo -n " run ATM ($MTHa) with $OMP_NUM_THREADS threads ;"
163			fi
164			echo ""
165			fi
166	jmc	1.10	# /usr/local/pkg/mpi/mpi-1.2.4..8a-gm-1.5/pgi/bin/mpirun.ch_gm -pg pr_group -wd $ROOTDIR --gm-kill 5 -v ./build_cpl/mitgcmuv > std_outp 2>&1
167			mpirun -p4pg pr_group -v ./build_cpl/mitgcmuv > std_outp 2>&1
168	jmc	1.1	tail -20 std_outp
169			ls -l rank_?/pickup*.ckptA.001.001.data
170
171			fi
172
173			if test $kpr = 4
174			then
175
176			if test -f rank_1/STDOUT.0000
177			then echo '==> check Ocean output:'
178			/home/jmc/bin/comp_res rank_1/STDOUT.0000 results/ocnSTDOUT.0000
179	jmc	1.10	mv -f comp_res.log comp_res.ocn
180			echo ' '
181	jmc	1.1	else echo 'No Ocean output file in rank_1' ; fi
182
183			if test -f rank_2/STDOUT.0000
184			then
185			echo '==> check Atmos output:'
186			/home/jmc/bin/comp_res rank_2/STDOUT.0000 results/atmSTDOUT.0000
187	jmc	1.10	mv -f comp_res.log comp_res.atm
188	jmc	1.1	echo '==> check Land output:'
189			/home/jmc/bin/comp_res rank_2/STDOUT.0000 results/atmSTDOUT.0000 L
190	jmc	1.10	mv -f comp_res.log comp_res.land
191	jmc	1.1	echo '==> check thSIce output:'
192			/home/jmc/bin/comp_res rank_2/STDOUT.0000 results/atmSTDOUT.0000 I
193	jmc	1.10	mv -f comp_res.log comp_res.sice
194			echo ' '
195	jmc	1.13	else echo 'No Atmos output file in rank_2' ; fi
196	jmc	1.1
197			fi
198
199			exit 0