#! /usr/bin/env bash

#  $Header: /home/ubuntu/mnt/e9_copy/MITgcm/verification/cfc_example/input/prepare_run,v 1.3 2008/05/05 22:34:24 jmc Exp $
#  $Name: checkpoint64t $
 
#- in order to save disc space, take *.bin files
#- a) from this dir:
fromDir="../../tutorial_global_oce_biogeo/input"

fileList=`( cd $fromDir ; ls *.bin | grep -v 'sillev1.bin' | grep -v 'bathy.bin' )`

#echo 'fileList=' $fileList

#- and do a symbolic link in the current directory 
#   (if the file does not already exist)
if test -d $fromDir ; then
  lnkList='files:'
  for xx in $fileList
  do
    if test -r ${fromDir}/$xx ; then 
      if test ! -r $xx ; then 
        lnkList=${lnkList}" "$xx
        ln -sf ${fromDir}/$xx .
      fi
    fi
  done
  echo ' link' $lnkList "from dir:" $fromDir
else
  echo " Error:" $fromDir "not a directory"
fi

#- and b) from this dir:
fromDir="../../tutorial_cfc_offline/input"

fileList=`( cd $fromDir ; ls pickup*.0004269600* *.bin )`

#- and do a symbolic link in the current directory 
#   (if the file does not already exist)
if test -d $fromDir ; then
  lnkList='files:'
  for xx in $fileList
  do
    if test -r ${fromDir}/$xx ; then 
      if test ! -r $xx ; then 
        lnkList=${lnkList}" "$xx
        ln -sf ${fromDir}/$xx .
      fi
    fi
  done
  echo ' link' $lnkList "from dir:" $fromDir
else
  echo " Error:" $fromDir "not a directory"
fi