MLAdjust/input.0.smag/data

# ====================
# | Model parameters |
# ====================
#
# Continuous equation parameters
 &PARM01
 viscAr=5.E-5,
# This is the background viscosity used total=viscah+viscleith
# viscAh=1.E2,
# viscA4=1.E2,
# This is the background viscosity used on vorticity points
# viscAhZ=1.E2,
# viscA4Z=1.E2,
# This is the background viscosity used on divergence points
# viscAhD=1.E2,
# viscA4D=1.E2,
# viscAhd and viscahz are set to viscah if they are unset initially
#
# This is a maximum gridscale Reynolds number limiter
# ViscAhRemax=10,
# ViscA4Remax=10,
# This is a minimum autoscaling viscosity
# ViscAhGridMin=.01,
# ViscA4GridMin=.01,
# This is the standard Leith Viscosity, prop to grad(curl v_h)
 viscC2leith=1.85,
# viscC4leith=1.85,
# This is an additional Leith Viscosity, prop to grad(div.v_h)
# It traps instabilities that have no signal in grad(curl v_h)
 viscC2leithD=1.85,
# viscC4leithD=1.85,
# This is harmonic Smagorinsky Coefficient
# 0.2-0.9=value from 3-d turbulence theory; Smagorinsky (1993)
# 2.2-4=stable oceanic values (Griffies and Hallberg, 2000)
# 1.0 smag is approximately the same as 1.85 leith+leithd
 viscC2Smag=1.0,
# viscC4Smag=1.0,
# This is the max Viscosity used, be it Smag or Leith, and it scales 
# with grid size and timestep
 viscAhGridMax=1.0,
# viscA4GridMax=1.0,
# This uses the full grad(vort) and grad(div)
 useFullLeith=.TRUE.,
# This uses the Strain-Tension form for calculating viscous terms
 useStrainTensionVisc=.FALSE.,
 no_slip_sides=.FALSE.,
 no_slip_bottom=.FALSE.,
 ivdc_kappa=10.,
 implicitDiffusion=.TRUE.,
 implicitViscosity=.TRUE.,
 f0=7.29e-5,
 beta=0.E-11,
 eosType='LINEAR',
# Using Temperature as only Active Tracer
 tAlpha=2.E-4,
# Using Salinity as Spice
 sBeta =0.E-4,
 saltStepping=.TRUE.,
 gravity=9.81,
 rhonil=1035.,
 implicitFreeSurface=.TRUE.,
 usejamartwetpoints=.TRUE.,
 rigidLid=.FALSE.,
 staggerTimeStep=.TRUE.,
 readBinaryPrec=64,
 writeBinaryPrec=64,
 tempAdvScheme=33,
 saltAdvScheme=33,
 nonHydrostatic=.FALSE.,
 vectorInvariantMomentum=.TRUE.,
 &

# Elliptic solver parameters
 &PARM02
 cg2dMaxIters=1000,
 cg2dTargetResidual=1.E-11,
 cg3dMaxIters=40,
 cg3dTargetResidual=1.E-9,
 &

# Time stepping parameters
 &PARM03
 nIter0=0,
#endTime=86400.,
#- for testing, only run for 12 iterations:
 nTimeSteps=12,
 deltaT=1200.,
 abEps=0.01,
#- for testing, reduce amount of output by commenting out output frequencies:
#pchkptFreq=43200.,
#taveFreq=7200.,
#dumpFreq=7200.,
#diagFreq=7200.,
 monitorFreq=1200.,
 cadjfreq=0.,
 &

# Gridding parameters
 &PARM04
 usingCartesianGrid=.TRUE.,
 delR= 40*5.0,
 dxSpacing=1.E3,
 dySpacing=1.E3,
 &

# Input datasets
 &PARM05
 bathyFile='topo_sl.bin',
 hydrogThetaFile='thetaInitial.bin',
 hydrogSaltFile='spiceInitial.bin',
 &
1	# ====================
2	# \| Model parameters \|
3	# ====================
4	#
5	# Continuous equation parameters
6	&PARM01
7	viscAr=5.E-5,
8	# This is the background viscosity used total=viscah+viscleith
9	# viscAh=1.E2,
10	# viscA4=1.E2,
11	# This is the background viscosity used on vorticity points
12	# viscAhZ=1.E2,
13	# viscA4Z=1.E2,
14	# This is the background viscosity used on divergence points
15	# viscAhD=1.E2,
16	# viscA4D=1.E2,
17	# viscAhd and viscahz are set to viscah if they are unset initially
18	#
19	# This is a maximum gridscale Reynolds number limiter
20	# ViscAhRemax=10,
21	# ViscA4Remax=10,
22	# This is a minimum autoscaling viscosity
23	# ViscAhGridMin=.01,
24	# ViscA4GridMin=.01,
25	# This is the standard Leith Viscosity, prop to grad(curl v_h)
26	viscC2leith=1.85,
27	# viscC4leith=1.85,
28	# This is an additional Leith Viscosity, prop to grad(div.v_h)
29	# It traps instabilities that have no signal in grad(curl v_h)
30	viscC2leithD=1.85,
31	# viscC4leithD=1.85,
32	# This is harmonic Smagorinsky Coefficient
33	# 0.2-0.9=value from 3-d turbulence theory; Smagorinsky (1993)
34	# 2.2-4=stable oceanic values (Griffies and Hallberg, 2000)
35	# 1.0 smag is approximately the same as 1.85 leith+leithd
36	viscC2Smag=1.0,
37	# viscC4Smag=1.0,
38	# This is the max Viscosity used, be it Smag or Leith, and it scales
39	# with grid size and timestep
40	viscAhGridMax=1.0,
41	# viscA4GridMax=1.0,
42	# This uses the full grad(vort) and grad(div)
43	useFullLeith=.TRUE.,
44	# This uses the Strain-Tension form for calculating viscous terms
45	useStrainTensionVisc=.FALSE.,
46	no_slip_sides=.FALSE.,
47	no_slip_bottom=.FALSE.,
48	ivdc_kappa=10.,
49	implicitDiffusion=.TRUE.,
50	implicitViscosity=.TRUE.,
51	f0=7.29e-5,
52	beta=0.E-11,
53	eosType='LINEAR',
54	# Using Temperature as only Active Tracer
55	tAlpha=2.E-4,
56	# Using Salinity as Spice
57	sBeta =0.E-4,
58	saltStepping=.TRUE.,
59	gravity=9.81,
60	rhonil=1035.,
61	implicitFreeSurface=.TRUE.,
62	usejamartwetpoints=.TRUE.,
63	rigidLid=.FALSE.,
64	staggerTimeStep=.TRUE.,
65	readBinaryPrec=64,
66	writeBinaryPrec=64,
67	tempAdvScheme=33,
68	saltAdvScheme=33,
69	nonHydrostatic=.FALSE.,
70	vectorInvariantMomentum=.TRUE.,
71	&
72
73	# Elliptic solver parameters
74	&PARM02
75	cg2dMaxIters=1000,
76	cg2dTargetResidual=1.E-11,
77	cg3dMaxIters=40,
78	cg3dTargetResidual=1.E-9,
79	&
80
81	# Time stepping parameters
82	&PARM03
83	nIter0=0,
84	#endTime=86400.,
85	#- for testing, only run for 12 iterations:
86	nTimeSteps=12,
87	deltaT=1200.,
88	abEps=0.01,
89	#- for testing, reduce amount of output by commenting out output frequencies:
90	#pchkptFreq=43200.,
91	#taveFreq=7200.,
92	#dumpFreq=7200.,
93	#diagFreq=7200.,
94	monitorFreq=1200.,
95	cadjfreq=0.,
96	&
97
98	# Gridding parameters
99	&PARM04
100	usingCartesianGrid=.TRUE.,
101	delR= 40*5.0,
102	dxSpacing=1.E3,
103	dySpacing=1.E3,
104	&
105
106	# Input datasets
107	&PARM05
108	bathyFile='topo_sl.bin',
109	hydrogThetaFile='thetaInitial.bin',
110	hydrogSaltFile='spiceInitial.bin',
111	&