| 1 |
function interpickups(dirin,dirout,varargin) |
| 2 |
% function interpickups(dirin,dirout,snap) |
| 3 |
% |
| 4 |
% This function interpolates the data in |
| 5 |
% a set of mnc pickup files and grid files from the MITgcm |
| 6 |
% given in dirin/pickup.*.nc and in dirin/grid.*.nc |
| 7 |
% (this can be a global file or a collection of per-tile pickup files) |
| 8 |
% to the pickup files dirout/pickup.*.nc and the grid files dirout/grid.*.nc |
| 9 |
% (this, too, can be a global file or a collection of per-tile pickup files) |
| 10 |
% |
| 11 |
% Extrapolation takes place near the domain edges if domain size |
| 12 |
% of pickout is larger than that of pickin. |
| 13 |
% |
| 14 |
% The number of vertical levels must be the same in the two sets of files. |
| 15 |
% |
| 16 |
% Snap is an optional argument if there is more than one timestep |
| 17 |
% in the file. The default is 1. |
| 18 |
% |
| 19 |
% May be fishy near boundaries if grid is not uniform... |
| 20 |
|
| 21 |
if nargin==2 |
| 22 |
snap=1 |
| 23 |
else |
| 24 |
snap=varargin{1} |
| 25 |
endif |
| 26 |
|
| 27 |
if (strcmp(dirin,dirout)) |
| 28 |
error('dir','You cant use the same input and output directories!') |
| 29 |
end |
| 30 |
|
| 31 |
pickin=dir([dirin '/pickup.*.nc']) |
| 32 |
gridin=dir([dirin '/grid.*.nc']) |
| 33 |
if length(pickin)~=length(gridin) |
| 34 |
error('in','Incompatible number of input pickups and gridfiles') |
| 35 |
end |
| 36 |
|
| 37 |
pickout=dir([dirout '/pickup.*.nc']) |
| 38 |
gridout=dir([dirout '/grid.*.nc']) |
| 39 |
if length(pickout)~=length(gridout) |
| 40 |
error('out','Incompatible number of output pickups and gridfiles') |
| 41 |
end |
| 42 |
|
| 43 |
%%%%%%%%%%%%INPUT SANITY |
| 44 |
|
| 45 |
fin=netcdf([dirin '/' pickin(1).name],'nowrite'); |
| 46 |
gin=netcdf([dirin '/' gridin(1).name],'nowrite'); |
| 47 |
Zcomp=fin{'Z'}(:); |
| 48 |
gZcomp=gin{'Z'}(:); |
| 49 |
if (sum(Zcomp~=gZcomp)>0) |
| 50 |
error('in','Incompatible Z-axis input pickup and gridfile: 1') |
| 51 |
end |
| 52 |
|
| 53 |
Xin=fin{'X'}(:); |
| 54 |
gXin=gin{'X'}(:); |
| 55 |
|
| 56 |
if (sum(gXin~=gXin)>0) |
| 57 |
error('in','Incompatible x-axis input pickups and gridfile: 1') |
| 58 |
end |
| 59 |
|
| 60 |
Yin=fin{'Y'}(:); |
| 61 |
gYin=gin{'Y'}(:); |
| 62 |
if (sum(gYin~=gYin)>0) |
| 63 |
error('in','Incompatible y-axis input pickups and gridfile: 1') |
| 64 |
end |
| 65 |
|
| 66 |
Xp1in=fin{'Xp1'}(:); |
| 67 |
gXp1in=gin{'Xp1'}(:); |
| 68 |
if (sum(gXp1in~=gXp1in)>0) |
| 69 |
error('in','Incompatible x-axis input pickups and gridfile: 1') |
| 70 |
end |
| 71 |
|
| 72 |
Yp1in=fin{'Yp1'}(:); |
| 73 |
gYp1in=gin{'Yp1'}(:); |
| 74 |
if (sum(gYp1in~=gYp1in)>0) |
| 75 |
error('in','Incompatible y-axis input pickups and gridfile: 1') |
| 76 |
end |
| 77 |
|
| 78 |
close(fin) |
| 79 |
close(gin) |
| 80 |
|
| 81 |
for i=2:length(pickin) |
| 82 |
fin=netcdf([dirin '/' pickin(i).name],'nowrite'); |
| 83 |
Z=fin{'Z'}(:); |
| 84 |
if (sum(Zcomp~=Z)>0) |
| 85 |
error('Z','Incompatible vertical axes in input pickups:',num2str(i)) |
| 86 |
end |
| 87 |
|
| 88 |
gin=netcdf([dirin '/' pickin(i).name],'nowrite'); |
| 89 |
Z=gin{'Z'}(:); |
| 90 |
if (sum(Zcomp~=Z)>0) |
| 91 |
error('Z','Incompatible vertical axes in input gridfiles:',num2str(i)) |
| 92 |
end |
| 93 |
|
| 94 |
Xin=sort([Xin;fin{'X'}(:)]); |
| 95 |
Xp1in=sort([Xp1in;fin{'Xp1'}(:)]); |
| 96 |
|
| 97 |
gXin=sort([gXin;gin{'X'}(:)]); |
| 98 |
gXp1in=sort([gXp1in;gin{'Xp1'}(:)]); |
| 99 |
|
| 100 |
if (sum(gXin~=Xin)>0) |
| 101 |
error('X','Incompatible x-axes in input files:',num2str(i)) |
| 102 |
end |
| 103 |
|
| 104 |
Yin=sort([Yin;fin{'Y'}(:)]); |
| 105 |
Yp1in=sort([Yp1in;fin{'Yp1'}(:)]); |
| 106 |
|
| 107 |
gYin=sort([gYin;fin{'Y'}(:)]); |
| 108 |
gYp1in=sort([gYp1in;fin{'Yp1'}(:)]); |
| 109 |
|
| 110 |
if (sum(gYin~=Yin)>0) |
| 111 |
error('Y','Incompatible y-axes in input files:',num2str(i)) |
| 112 |
end |
| 113 |
|
| 114 |
close(fin); |
| 115 |
close(gin); |
| 116 |
end |
| 117 |
|
| 118 |
store=[Xin(1)]; |
| 119 |
for i=2:length(Xin) |
| 120 |
if Xin(i-1)~=Xin(i) |
| 121 |
store(end+1)=Xin(i); |
| 122 |
end |
| 123 |
end |
| 124 |
Xin=store'; |
| 125 |
clear gXin |
| 126 |
|
| 127 |
store=[Xp1in(1)]; |
| 128 |
for i=2:length(Xp1in) |
| 129 |
if Xp1in(i-1)~=Xp1in(i) |
| 130 |
store(end+1)=Xp1in(i); |
| 131 |
end |
| 132 |
end |
| 133 |
Xp1in=store'; |
| 134 |
clear gXp1in |
| 135 |
|
| 136 |
store=[Yin(1)]; |
| 137 |
for i=2:length(Yin) |
| 138 |
if Yin(i-1)~=Yin(i) |
| 139 |
store(end+1)=Yin(i); |
| 140 |
end |
| 141 |
end |
| 142 |
Yin=store'; |
| 143 |
clear gYin |
| 144 |
|
| 145 |
store=[Yp1in(1)]; |
| 146 |
for i=2:length(Yp1in) |
| 147 |
if Yp1in(i-1)~=Yp1in(i) |
| 148 |
store(end+1)=Yp1in(i); |
| 149 |
end |
| 150 |
end |
| 151 |
Yp1in=store'; |
| 152 |
clear gYp1in |
| 153 |
|
| 154 |
%%%%%%%%%%%%%%% OUTPUT SANITY |
| 155 |
fout=netcdf([dirout '/' pickout(1).name],'nowrite'); |
| 156 |
gout=netcdf([dirout '/' gridout(1).name],'nowrite'); |
| 157 |
Zcomp=fout{'Z'}(:); |
| 158 |
gZcomp=gout{'Z'}(:); |
| 159 |
if (sum(Zcomp~=gZcomp)>0) |
| 160 |
error('out','Incompatible Z-axis output pickup and gridfile: 1') |
| 161 |
end |
| 162 |
|
| 163 |
Xout=fout{'X'}(:); |
| 164 |
gXout=gout{'X'}(:); |
| 165 |
|
| 166 |
if (sum(gXout~=gXout)>0) |
| 167 |
error('out','Incompatible x-axis output pickups and gridfile: 1') |
| 168 |
end |
| 169 |
|
| 170 |
Yout=fout{'Y'}(:); |
| 171 |
gYout=gout{'Y'}(:); |
| 172 |
if (sum(gYout~=gYout)>0) |
| 173 |
error('out','Incompatible y-axis output pickups and gridfile: 1') |
| 174 |
end |
| 175 |
|
| 176 |
Xp1out=fout{'Xp1'}(:); |
| 177 |
gXp1out=gout{'Xp1'}(:); |
| 178 |
if (sum(gXp1out~=gXp1out)>0) |
| 179 |
error('out','Incompatible x-axis output pickups and gridfile: 1') |
| 180 |
end |
| 181 |
|
| 182 |
Yp1out=fout{'Yp1'}(:); |
| 183 |
gYp1out=gout{'Yp1'}(:); |
| 184 |
if (sum(gYp1out~=gYp1out)>0) |
| 185 |
error('out','Incompatible y-axis output pickups and gridfile: 1') |
| 186 |
end |
| 187 |
|
| 188 |
close(fout) |
| 189 |
close(gout) |
| 190 |
|
| 191 |
for i=2:length(pickout) |
| 192 |
fout=netcdf([dirout '/' pickout(i).name],'nowrite'); |
| 193 |
Z=fout{'Z'}(:); |
| 194 |
if (sum(Zcomp~=Z)>0) |
| 195 |
error('Z','Incompatible vertical axes in output pickups:',num2str(i)) |
| 196 |
end |
| 197 |
|
| 198 |
gout=netcdf([dirout '/' pickout(i).name],'nowrite'); |
| 199 |
Z=gout{'Z'}(:); |
| 200 |
if (sum(Zcomp~=Z)>0) |
| 201 |
error('Z','Incompatible vertical axes in output gridfiles:',num2str(i)) |
| 202 |
end |
| 203 |
|
| 204 |
Xout=sort([Xout;fout{'X'}(:)]); |
| 205 |
Xp1out=sort([Xp1out;fout{'Xp1'}(:)]); |
| 206 |
|
| 207 |
gXout=sort([gXout;gout{'X'}(:)]); |
| 208 |
gXp1out=sort([gXp1out;gout{'Xp1'}(:)]); |
| 209 |
|
| 210 |
if (sum(gXout~=Xout)>0) |
| 211 |
error('X','Incompatible x-axes in output files:',num2str(i)) |
| 212 |
end |
| 213 |
|
| 214 |
Yout=sort([Yout;fout{'Y'}(:)]); |
| 215 |
Yp1out=sort([Yp1out;fout{'Yp1'}(:)]); |
| 216 |
|
| 217 |
gYout=sort([gYout;fout{'Y'}(:)]); |
| 218 |
gYp1out=sort([gYp1out;fout{'Yp1'}(:)]); |
| 219 |
|
| 220 |
if (sum(gYout~=Yout)>0) |
| 221 |
error('Y','Incompatible y-axes in output files:',num2str(i)) |
| 222 |
end |
| 223 |
|
| 224 |
close(fout); |
| 225 |
close(gout); |
| 226 |
end |
| 227 |
|
| 228 |
store=[Xout(1)]; |
| 229 |
for i=2:length(Xout) |
| 230 |
if Xout(i-1)~=Xout(i) |
| 231 |
store(end+1)=Xout(i); |
| 232 |
end |
| 233 |
end |
| 234 |
Xout=store'; |
| 235 |
clear gXout |
| 236 |
|
| 237 |
store=[Xp1out(1)]; |
| 238 |
for i=2:length(Xp1out) |
| 239 |
if Xp1out(i-1)~=Xp1out(i) |
| 240 |
store(end+1)=Xp1out(i); |
| 241 |
end |
| 242 |
end |
| 243 |
Xp1out=store'; |
| 244 |
clear gXp1out |
| 245 |
|
| 246 |
store=[Yout(1)]; |
| 247 |
for i=2:length(Yout) |
| 248 |
if Yout(i-1)~=Yout(i) |
| 249 |
store(end+1)=Yout(i); |
| 250 |
end |
| 251 |
end |
| 252 |
Yout=store'; |
| 253 |
clear gYout |
| 254 |
|
| 255 |
store=[Yp1out(1)]; |
| 256 |
for i=2:length(Yp1out) |
| 257 |
if Yp1out(i-1)~=Yp1out(i) |
| 258 |
store(end+1)=Yp1out(i); |
| 259 |
end |
| 260 |
end |
| 261 |
Yp1out=store'; |
| 262 |
clear gYp1out |
| 263 |
|
| 264 |
|
| 265 |
% First, do the Centered variables |
| 266 |
|
| 267 |
% We assume periodicity as MITgcm does |
| 268 |
Xinext=[2*Xin(1)-Xin(2);Xin;2*Xin(end)-Xin(end-1)]; |
| 269 |
Yinext=[2*Yin(1)-Yin(2);Yin;2*Yin(end)-Yin(end-1)]; |
| 270 |
|
| 271 |
[xcin,ycin]=meshgrid(Xinext,Yinext); |
| 272 |
[xcout,ycout]=meshgrid(Xout,Yout); |
| 273 |
|
| 274 |
%%%%%%%%%%%%% HFacCoutk |
| 275 |
|
| 276 |
HFacoutk=ones([length(Zcomp) size(xcout)]); |
| 277 |
|
| 278 |
disp(['Calculating HFacC...']) |
| 279 |
for j=1:length(gridout) |
| 280 |
gout=netcdf([dirout '/' gridout(j).name],'nowrite'); |
| 281 |
Xhere=gout{'X'}(:); |
| 282 |
Yhere=gout{'Y'}(:); |
| 283 |
HFacouthere=gout{'HFacC'}(:,:,:); |
| 284 |
for ii=1:length(Xhere) |
| 285 |
for jj=1:length(Yhere) |
| 286 |
[jjj,iii]=find((Xhere(ii)==xcout).*(Yhere(jj)==ycout)); |
| 287 |
HFacoutk(:,jjj,iii)=HFacouthere(:,jj,ii); |
| 288 |
end |
| 289 |
end |
| 290 |
close(gout) |
| 291 |
end |
| 292 |
clear HFacouthere |
| 293 |
disp(['Done.']) |
| 294 |
|
| 295 |
%%%%%%%%%%%%% ETA |
| 296 |
|
| 297 |
Fieldin=NaN*ones(size(xcin)); |
| 298 |
Fieldout=NaN*ones(size(xcout)); |
| 299 |
|
| 300 |
Fieldin=NaN*ones(size(xcin)); |
| 301 |
Fieldout=NaN*ones(size(xcout)); |
| 302 |
for j=1:length(pickin) |
| 303 |
fin=netcdf([dirin '/' pickin(j).name],'nowrite'); |
| 304 |
gin=netcdf([dirin '/' gridin(j).name],'nowrite'); |
| 305 |
Xhere=fin{'X'}(:); |
| 306 |
Yhere=fin{'Y'}(:); |
| 307 |
Fieldinhere=fin{'Eta'}(:,:); |
| 308 |
HFacinhere=squeeze(gin{'HFacC'}(1,:,:)); |
| 309 |
for ii=1:length(Xhere) |
| 310 |
for jj=1:length(Yhere) |
| 311 |
[jjj,iii]=find((Xhere(ii)==xcin).*(Yhere(jj)==ycin)); |
| 312 |
Fieldin(jjj,iii)=Fieldinhere(jj,ii); |
| 313 |
if (HFacinhere(jj,ii)==0) |
| 314 |
Fieldin(jjj,iii)=NaN; |
| 315 |
end |
| 316 |
end |
| 317 |
end |
| 318 |
close(fin) |
| 319 |
close(gin) |
| 320 |
end |
| 321 |
% This utilizes periodic geometry |
| 322 |
Fieldin(:,1)=Fieldin(:,end-1); |
| 323 |
Fieldin(:,end)=Fieldin(:,2); |
| 324 |
|
| 325 |
Fieldin(1,:)=Fieldin(end-1,:); |
| 326 |
Fieldin(end,:)=Fieldin(2,:); |
| 327 |
|
| 328 |
disp(['Interpolating Eta ...']) |
| 329 |
Field0=griddata(xcin,ycin,Fieldin,xcout,ycout,'linear',{'Qt','Qbb','Qc','Qz'}); |
| 330 |
Fieldout=inpaint_nans(Field0,0); |
| 331 |
disp('Done.') |
| 332 |
|
| 333 |
disp(['Zeroing Eta within topography']) |
| 334 |
Fieldout=Fieldout.*squeeze(HFacoutk(1,:,:)); |
| 335 |
disp('Done.') |
| 336 |
|
| 337 |
for j=1:length(pickout) |
| 338 |
fout=netcdf([dirout '/' pickout(j).name],'write'); |
| 339 |
Xhere=fout{'X'}(:); |
| 340 |
Yhere=fout{'Y'}(:); |
| 341 |
[jj,ii]=find((Xhere(1)<=xcout).*(xcout<=Xhere(end)).*(Yhere(1)<=ycout).*(ycout<=Yhere(end))); |
| 342 |
fout{'Eta'}(:,:)=Fieldout(min(jj):max(jj),min(ii):max(ii)); |
| 343 |
close(fout) |
| 344 |
end |
| 345 |
|
| 346 |
%%%%%%%%%%%%% EtaH |
| 347 |
|
| 348 |
Fieldin=NaN*ones(size(xcin)); |
| 349 |
Fieldout=NaN*ones(size(xcout)); |
| 350 |
|
| 351 |
Fieldin=NaN*ones(size(xcin)); |
| 352 |
Fieldout=NaN*ones(size(xcout)); |
| 353 |
for j=1:length(pickin) |
| 354 |
fin=netcdf([dirin '/' pickin(j).name],'nowrite'); |
| 355 |
gin=netcdf([dirin '/' gridin(j).name],'nowrite'); |
| 356 |
Xhere=fin{'X'}(:); |
| 357 |
Yhere=fin{'Y'}(:); |
| 358 |
Fieldinhere=fin{'EtaH'}(:,:); |
| 359 |
HFacinhere=squeeze(gin{'HFacC'}(1,:,:)); |
| 360 |
for ii=1:length(Xhere) |
| 361 |
for jj=1:length(Yhere) |
| 362 |
[jjj,iii]=find((Xhere(ii)==xcin).*(Yhere(jj)==ycin)); |
| 363 |
Fieldin(jjj,iii)=Fieldinhere(jj,ii); |
| 364 |
if (HFacinhere(jj,ii)==0) |
| 365 |
Fieldin(jjj,iii)=NaN; |
| 366 |
end |
| 367 |
end |
| 368 |
end |
| 369 |
close(fin) |
| 370 |
close(gin) |
| 371 |
end |
| 372 |
% This utilizes periodic geometry |
| 373 |
Fieldin(:,1)=Fieldin(:,end-1); |
| 374 |
Fieldin(:,end)=Fieldin(:,2); |
| 375 |
|
| 376 |
Fieldin(1,:)=Fieldin(end-1,:); |
| 377 |
Fieldin(end,:)=Fieldin(2,:); |
| 378 |
|
| 379 |
disp(['Interpolating EtaH ...']) |
| 380 |
Field0=griddata(xcin,ycin,Fieldin,xcout,ycout,'linear',{'Qt','Qbb','Qc','Qz'}); |
| 381 |
Fieldout=inpaint_nans(Field0,0); |
| 382 |
disp('Done.') |
| 383 |
|
| 384 |
disp(['Zeroing EtaH within topography']) |
| 385 |
Fieldout=Fieldout.*squeeze(HFacoutk(1,:,:)); |
| 386 |
disp('Done.') |
| 387 |
|
| 388 |
for j=1:length(pickout) |
| 389 |
fout=netcdf([dirout '/' pickout(j).name],'write'); |
| 390 |
Xhere=fout{'X'}(:); |
| 391 |
Yhere=fout{'Y'}(:); |
| 392 |
[jj,ii]=find((Xhere(1)<=xcout).*(xcout<=Xhere(end)).*(Yhere(1)<=ycout).*(ycout<=Yhere(end))); |
| 393 |
fout{'EtaH'}(:,:)=Fieldout(min(jj):max(jj),min(ii):max(ii)); |
| 394 |
close(fout) |
| 395 |
end |
| 396 |
|
| 397 |
%%%%%%%%%%%%% EtaHdt |
| 398 |
|
| 399 |
Fieldin=NaN*ones(size(xcin)); |
| 400 |
Fieldout=NaN*ones(size(xcout)); |
| 401 |
|
| 402 |
Fieldin=NaN*ones(size(xcin)); |
| 403 |
Fieldout=NaN*ones(size(xcout)); |
| 404 |
for j=1:length(pickin) |
| 405 |
fin=netcdf([dirin '/' pickin(j).name],'nowrite'); |
| 406 |
gin=netcdf([dirin '/' gridin(j).name],'nowrite'); |
| 407 |
Xhere=fin{'X'}(:); |
| 408 |
Yhere=fin{'Y'}(:); |
| 409 |
Fieldinhere=fin{'dEtaHdt'}(:,:); |
| 410 |
HFacinhere=squeeze(gin{'HFacC'}(1,:,:)); |
| 411 |
for ii=1:length(Xhere) |
| 412 |
for jj=1:length(Yhere) |
| 413 |
[jjj,iii]=find((Xhere(ii)==xcin).*(Yhere(jj)==ycin)); |
| 414 |
Fieldin(jjj,iii)=Fieldinhere(jj,ii); |
| 415 |
if (HFacinhere(jj,ii)==0) |
| 416 |
Fieldin(jjj,iii)=NaN; |
| 417 |
end |
| 418 |
end |
| 419 |
end |
| 420 |
close(fin) |
| 421 |
close(gin) |
| 422 |
end |
| 423 |
% This utilizes periodic geometry |
| 424 |
Fieldin(:,1)=Fieldin(:,end-1); |
| 425 |
Fieldin(:,end)=Fieldin(:,2); |
| 426 |
|
| 427 |
Fieldin(1,:)=Fieldin(end-1,:); |
| 428 |
Fieldin(end,:)=Fieldin(2,:); |
| 429 |
|
| 430 |
disp(['Interpolating dEtaHdt ...']) |
| 431 |
Field0=griddata(xcin,ycin,Fieldin,xcout,ycout,'linear',{'Qt','Qbb','Qc','Qz'}); |
| 432 |
Fieldout=inpaint_nans(Field0,0); |
| 433 |
disp('Done.') |
| 434 |
|
| 435 |
disp(['Zeroing dEtaHdt within topography']) |
| 436 |
Fieldout=Fieldout.*squeeze(HFacoutk(1,:,:)); |
| 437 |
disp('Done.') |
| 438 |
|
| 439 |
for j=1:length(pickout) |
| 440 |
fout=netcdf([dirout '/' pickout(j).name],'write'); |
| 441 |
Xhere=fout{'X'}(:); |
| 442 |
Yhere=fout{'Y'}(:); |
| 443 |
[jj,ii]=find((Xhere(1)<=xcout).*(xcout<=Xhere(end)).*(Yhere(1)<=ycout).*(ycout<=Yhere(end))); |
| 444 |
fout{'dEtaHdt'}(:,:)=Fieldout(min(jj):max(jj),min(ii):max(ii)); |
| 445 |
close(fout) |
| 446 |
end |
| 447 |
|
| 448 |
%S,gSnm1,Temp,gTnm1,phi_nh are on Xc,Rc |
| 449 |
|
| 450 |
%%%%%%%%%%%%%% S |
| 451 |
|
| 452 |
Fieldoutk=zeros([length(Zcomp) size(xcout)]); |
| 453 |
for k=1:length(Zcomp) |
| 454 |
clear Fieldinhere |
| 455 |
Fieldin=NaN*ones(size(xcin)); |
| 456 |
Fieldout=NaN*ones(size(xcout)); |
| 457 |
|
| 458 |
for j=1:length(pickin) |
| 459 |
fin=netcdf([dirin '/' pickin(j).name],'nowrite'); |
| 460 |
gin=netcdf([dirin '/' gridin(j).name],'nowrite'); |
| 461 |
Xhere=fin{'X'}(:); |
| 462 |
Yhere=fin{'Y'}(:); |
| 463 |
Fieldinhere=squeeze(fin{'S'}(snap,k,:,:)); |
| 464 |
HFacinhere=squeeze(gin{'HFacC'}(k,:,:)); |
| 465 |
for ii=1:length(Xhere) |
| 466 |
for jj=1:length(Yhere) |
| 467 |
[jjj,iii]=find((Xhere(ii)==xcin).*(Yhere(jj)==ycin)); |
| 468 |
Fieldin(jjj,iii)=Fieldinhere(jj,ii); |
| 469 |
if (HFacinhere(jj,ii)==0) |
| 470 |
Fieldin(jjj,iii)=NaN; |
| 471 |
end |
| 472 |
end |
| 473 |
end |
| 474 |
close(fin) |
| 475 |
close(gin) |
| 476 |
end |
| 477 |
% This utilizes periodic geometry |
| 478 |
Fieldin(:,1)=Fieldin(:,end-1); |
| 479 |
Fieldin(:,end)=Fieldin(:,2); |
| 480 |
|
| 481 |
Fieldin(1,:)=Fieldin(end-1,:); |
| 482 |
Fieldin(end,:)=Fieldin(2,:); |
| 483 |
|
| 484 |
disp(['Interpolating S:',num2str(k),'...']) |
| 485 |
Field0=griddata(xcin,ycin,Fieldin,xcout,ycout,'linear',{'Qt','Qbb','Qc','Qz'}); |
| 486 |
Fieldout=inpaint_nans(Field0,0); |
| 487 |
disp('Done.') |
| 488 |
|
| 489 |
disp(['Zeroing S:',num2str(k),' within topography']) |
| 490 |
Fieldoutk(k,:,:)=Fieldout.*squeeze(HFacoutk(k,:,:)); |
| 491 |
disp('Done.') |
| 492 |
end |
| 493 |
|
| 494 |
for j=1:length(pickout) |
| 495 |
fout=netcdf([dirout '/' pickout(j).name],'write'); |
| 496 |
Xhere=fout{'X'}(:); |
| 497 |
Yhere=fout{'Y'}(:); |
| 498 |
[jj,ii]=find((Xhere(1)<=xcout).*(xcout<=Xhere(end)).*(Yhere(1)<=ycout).*(ycout<=Yhere(end))); |
| 499 |
fout{'S'}(:,:,:)=Fieldoutk(:,min(jj):max(jj),min(ii):max(ii)); |
| 500 |
close(fout) |
| 501 |
end |
| 502 |
|
| 503 |
%%%%%%%%%%%%%% gSnm1 |
| 504 |
|
| 505 |
Fieldoutk=zeros([length(Zcomp) size(xcout)]); |
| 506 |
for k=1:length(Zcomp) |
| 507 |
Fieldin=NaN*ones(size(xcin)); |
| 508 |
Fieldout=NaN*ones(size(xcout)); |
| 509 |
|
| 510 |
for j=1:length(pickin) |
| 511 |
fin=netcdf([dirin '/' pickin(j).name],'nowrite'); |
| 512 |
gin=netcdf([dirin '/' gridin(j).name],'nowrite'); |
| 513 |
Xhere=fin{'X'}(:); |
| 514 |
Yhere=fin{'Y'}(:); |
| 515 |
Fieldinhere=squeeze(fin{'gSnm1'}(snap,k,:,:)); |
| 516 |
HFacinhere=squeeze(gin{'HFacC'}(k,:,:)); |
| 517 |
for ii=1:length(Xhere) |
| 518 |
for jj=1:length(Yhere) |
| 519 |
[jjj,iii]=find((Xhere(ii)==xcin).*(Yhere(jj)==ycin)); |
| 520 |
Fieldin(jjj,iii)=Fieldinhere(jj,ii); |
| 521 |
if (HFacinhere(jj,ii)==0) |
| 522 |
Fieldin(jjj,iii)=NaN; |
| 523 |
end |
| 524 |
end |
| 525 |
end |
| 526 |
close(fin) |
| 527 |
close(gin) |
| 528 |
end |
| 529 |
% This utilizes periodic geometry |
| 530 |
Fieldin(:,1)=Fieldin(:,end-1); |
| 531 |
Fieldin(:,end)=Fieldin(:,2); |
| 532 |
|
| 533 |
Fieldin(1,:)=Fieldin(end-1,:); |
| 534 |
Fieldin(end,:)=Fieldin(2,:); |
| 535 |
|
| 536 |
disp(['Interpolating gSnm1:',num2str(k),'...']) |
| 537 |
Field0=griddata(xcin,ycin,Fieldin,xcout,ycout,'linear',{'Qt','Qbb','Qc','Qz'}); |
| 538 |
Fieldout=inpaint_nans(Field0,0); |
| 539 |
disp('Done.') |
| 540 |
|
| 541 |
disp(['Zeroing gSnm1:',num2str(k),' within topography']) |
| 542 |
Fieldoutk(k,:,:)=Fieldout.*squeeze(HFacoutk(k,:,:)); |
| 543 |
disp('Done.') |
| 544 |
end |
| 545 |
|
| 546 |
for j=1:length(pickout) |
| 547 |
fout=netcdf([dirout '/' pickout(j).name],'write'); |
| 548 |
Xhere=fout{'X'}(:); |
| 549 |
Yhere=fout{'Y'}(:); |
| 550 |
[jj,ii]=find((Xhere(1)<=xcout).*(xcout<=Xhere(end)).*(Yhere(1)<=ycout).*(ycout<=Yhere(end))); |
| 551 |
fout{'gSnm1'}(:,:,:)=Fieldoutk(:,min(jj):max(jj),min(ii):max(ii)); |
| 552 |
close(fout) |
| 553 |
end |
| 554 |
|
| 555 |
%%%%%%%%%%%%%% Temp |
| 556 |
|
| 557 |
Fieldoutk=zeros([length(Zcomp) size(xcout)]); |
| 558 |
for k=1:length(Zcomp) |
| 559 |
Fieldin=NaN*ones(size(xcin)); |
| 560 |
Fieldout=NaN*ones(size(xcout)); |
| 561 |
|
| 562 |
for j=1:length(pickin) |
| 563 |
fin=netcdf([dirin '/' pickin(j).name],'nowrite'); |
| 564 |
gin=netcdf([dirin '/' gridin(j).name],'nowrite'); |
| 565 |
Xhere=fin{'X'}(:); |
| 566 |
Yhere=fin{'Y'}(:); |
| 567 |
Fieldinhere=squeeze(fin{'Temp'}(snap,k,:,:)); |
| 568 |
HFacinhere=squeeze(gin{'HFacC'}(k,:,:)); |
| 569 |
for ii=1:length(Xhere) |
| 570 |
for jj=1:length(Yhere) |
| 571 |
[jjj,iii]=find((Xhere(ii)==xcin).*(Yhere(jj)==ycin)); |
| 572 |
Fieldin(jjj,iii)=Fieldinhere(jj,ii); |
| 573 |
if (HFacinhere(jj,ii)==0) |
| 574 |
Fieldin(jjj,iii)=NaN; |
| 575 |
end |
| 576 |
end |
| 577 |
end |
| 578 |
close(fin) |
| 579 |
close(gin) |
| 580 |
end |
| 581 |
% This utilizes periodic geometry |
| 582 |
Fieldin(:,1)=Fieldin(:,end-1); |
| 583 |
Fieldin(:,end)=Fieldin(:,2); |
| 584 |
|
| 585 |
Fieldin(1,:)=Fieldin(end-1,:); |
| 586 |
Fieldin(end,:)=Fieldin(2,:); |
| 587 |
|
| 588 |
disp(['Interpolating Temp:',num2str(k),'...']) |
| 589 |
Field0=griddata(xcin,ycin,Fieldin,xcout,ycout,'linear',{'Qt','Qbb','Qc','Qz'}); |
| 590 |
Fieldout=inpaint_nans(Field0,0); |
| 591 |
disp('Done.') |
| 592 |
|
| 593 |
disp(['Zeroing Temp:',num2str(k),' within topography']) |
| 594 |
Fieldoutk(k,:,:)=Fieldout.*squeeze(HFacoutk(k,:,:)); |
| 595 |
disp('Done.') |
| 596 |
end |
| 597 |
|
| 598 |
for j=1:length(pickout) |
| 599 |
fout=netcdf([dirout '/' pickout(j).name],'write'); |
| 600 |
Xhere=fout{'X'}(:); |
| 601 |
Yhere=fout{'Y'}(:); |
| 602 |
[jj,ii]=find((Xhere(1)<=xcout).*(xcout<=Xhere(end)).*(Yhere(1)<=ycout).*(ycout<=Yhere(end))); |
| 603 |
fout{'Temp'}(:,:,:)=Fieldoutk(:,min(jj):max(jj),min(ii):max(ii)); |
| 604 |
close(fout) |
| 605 |
end |
| 606 |
|
| 607 |
%%%%%%%%%%%%%% gTnm1 |
| 608 |
|
| 609 |
Fieldoutk=zeros([length(Zcomp) size(xcout)]); |
| 610 |
for k=1:length(Zcomp) |
| 611 |
Fieldin=NaN*ones(size(xcin)); |
| 612 |
Fieldout=NaN*ones(size(xcout)); |
| 613 |
|
| 614 |
for j=1:length(pickin) |
| 615 |
fin=netcdf([dirin '/' pickin(j).name],'nowrite'); |
| 616 |
gin=netcdf([dirin '/' gridin(j).name],'nowrite'); |
| 617 |
Xhere=fin{'X'}(:); |
| 618 |
Yhere=fin{'Y'}(:); |
| 619 |
Fieldinhere=squeeze(fin{'gTnm1'}(snap,k,:,:)); |
| 620 |
HFacinhere=squeeze(gin{'HFacC'}(k,:,:)); |
| 621 |
for ii=1:length(Xhere) |
| 622 |
for jj=1:length(Yhere) |
| 623 |
[jjj,iii]=find((Xhere(ii)==xcin).*(Yhere(jj)==ycin)); |
| 624 |
Fieldin(jjj,iii)=Fieldinhere(jj,ii); |
| 625 |
if (HFacinhere(jj,ii)==0) |
| 626 |
Fieldin(jjj,iii)=NaN; |
| 627 |
end |
| 628 |
end |
| 629 |
end |
| 630 |
close(fin) |
| 631 |
close(gin) |
| 632 |
end |
| 633 |
% This utilizes periodic geometry |
| 634 |
Fieldin(:,1)=Fieldin(:,end-1); |
| 635 |
Fieldin(:,end)=Fieldin(:,2); |
| 636 |
|
| 637 |
Fieldin(1,:)=Fieldin(end-1,:); |
| 638 |
Fieldin(end,:)=Fieldin(2,:); |
| 639 |
|
| 640 |
disp(['Interpolating gTnm1:',num2str(k),'...']) |
| 641 |
Field0=griddata(xcin,ycin,Fieldin,xcout,ycout,'linear',{'Qt','Qbb','Qc','Qz'}); |
| 642 |
Fieldout=inpaint_nans(Field0,0); |
| 643 |
disp('Done.') |
| 644 |
|
| 645 |
disp(['Zeroing gTnm1:',num2str(k),' within topography']) |
| 646 |
Fieldoutk(k,:,:)=Fieldout.*squeeze(HFacoutk(k,:,:)); |
| 647 |
disp('Done.') |
| 648 |
end |
| 649 |
|
| 650 |
for j=1:length(pickout) |
| 651 |
fout=netcdf([dirout '/' pickout(j).name],'write'); |
| 652 |
Xhere=fout{'X'}(:); |
| 653 |
Yhere=fout{'Y'}(:); |
| 654 |
[jj,ii]=find((Xhere(1)<=xcout).*(xcout<=Xhere(end)).*(Yhere(1)<=ycout).*(ycout<=Yhere(end))); |
| 655 |
fout{'gTnm1'}(:,:,:)=Fieldoutk(:,min(jj):max(jj),min(ii):max(ii)); |
| 656 |
close(fout) |
| 657 |
end |
| 658 |
|
| 659 |
%%%%%%%%%%%%%% phi_nh |
| 660 |
fin=netcdf([dirin '/' pickin(1).name],'nowrite'); |
| 661 |
status=fin{'phi_nh'}; |
| 662 |
if ~isempty(status) |
| 663 |
|
| 664 |
Fieldoutk=zeros([length(Zcomp) size(xcout)]); |
| 665 |
for k=1:length(Zcomp) |
| 666 |
Fieldin=NaN*ones(size(xcin)); |
| 667 |
Fieldout=NaN*ones(size(xcout)); |
| 668 |
|
| 669 |
for j=1:length(pickin) |
| 670 |
fin=netcdf([dirin '/' pickin(j).name],'nowrite'); |
| 671 |
gin=netcdf([dirin '/' gridin(j).name],'nowrite'); |
| 672 |
Xhere=fin{'X'}(:); |
| 673 |
Yhere=fin{'Y'}(:); |
| 674 |
Fieldinhere=squeeze(fin{'phi_nh'}(snap,k,:,:)); |
| 675 |
HFacinhere=squeeze(gin{'HFacC'}(k,:,:)); |
| 676 |
for ii=1:length(Xhere) |
| 677 |
for jj=1:length(Yhere) |
| 678 |
[jjj,iii]=find((Xhere(ii)==xcin).*(Yhere(jj)==ycin)); |
| 679 |
Fieldin(jjj,iii)=Fieldinhere(jj,ii); |
| 680 |
if (HFacinhere(jj,ii)==0) |
| 681 |
Fieldin(jjj,iii)=NaN; |
| 682 |
end |
| 683 |
end |
| 684 |
end |
| 685 |
close(fin) |
| 686 |
close(gin) |
| 687 |
end |
| 688 |
% This utilizes periodic geometry |
| 689 |
Fieldin(:,1)=Fieldin(:,end-1); |
| 690 |
Fieldin(:,end)=Fieldin(:,2); |
| 691 |
|
| 692 |
Fieldin(1,:)=Fieldin(end-1,:); |
| 693 |
Fieldin(end,:)=Fieldin(2,:); |
| 694 |
|
| 695 |
disp(['Interpolating phi_nh:',num2str(k),'...']) |
| 696 |
Field0=griddata(xcin,ycin,Fieldin,xcout,ycout,'linear',{'Qt','Qbb','Qc','Qz'}); |
| 697 |
Fieldout=inpaint_nans(Field0,0); |
| 698 |
disp('Done.') |
| 699 |
|
| 700 |
disp(['Zeroing phi_nh:',num2str(k),' within topography']) |
| 701 |
Fieldoutk(k,:,:)=Fieldout.*squeeze(HFacoutk(k,:,:)); |
| 702 |
disp('Done.') |
| 703 |
end |
| 704 |
|
| 705 |
for j=1:length(pickout) |
| 706 |
fout=netcdf([dirout '/' pickout(j).name],'write'); |
| 707 |
Xhere=fout{'X'}(:); |
| 708 |
Yhere=fout{'Y'}(:); |
| 709 |
[jj,ii]=find((Xhere(1)<=xcout).*(xcout<=Xhere(end)).*(Yhere(1)<=ycout).*(ycout<=Yhere(end))); |
| 710 |
fout{'phi_nh'}(:,:,:)=Fieldoutk(:,min(jj):max(jj),min(ii):max(ii)); |
| 711 |
close(fout) |
| 712 |
end |
| 713 |
|
| 714 |
end %isempty(status) |
| 715 |
|
| 716 |
%%%%%%%%%%%%%%%%%% gW |
| 717 |
%BFK Not sure this is right, since HFacC isn't on the right grid for gW |
| 718 |
|
| 719 |
fin=netcdf([dirin '/' pickin(1).name],'nowrite'); |
| 720 |
status=fin{'gW'}; |
| 721 |
|
| 722 |
if ~isempty(status) |
| 723 |
|
| 724 |
Fieldoutk=zeros([length(Zcomp) size(xcout)]); |
| 725 |
for k=1:length(Zcomp) |
| 726 |
Fieldin=NaN*ones(size(xcin)); |
| 727 |
Fieldout=NaN*ones(size(xcout)); |
| 728 |
|
| 729 |
for j=1:length(pickin) |
| 730 |
fin=netcdf([dirin '/' pickin(j).name],'nowrite'); |
| 731 |
gin=netcdf([dirin '/' gridin(j).name],'nowrite'); |
| 732 |
Xhere=fin{'X'}(:); |
| 733 |
Yhere=fin{'Y'}(:); |
| 734 |
Fieldinhere=squeeze(fin{'gW'}(snap,k,:,:)); |
| 735 |
HFacinhere=squeeze(gin{'HFacC'}(k,:,:)); |
| 736 |
for ii=1:length(Xhere) |
| 737 |
for jj=1:length(Yhere) |
| 738 |
[jjj,iii]=find((Xhere(ii)==xcin).*(Yhere(jj)==ycin)); |
| 739 |
Fieldin(jjj,iii)=Fieldinhere(jj,ii); |
| 740 |
if (HFacinhere(jj,ii)==0) |
| 741 |
Fieldin(jjj,iii)=NaN; |
| 742 |
end |
| 743 |
end |
| 744 |
end |
| 745 |
close(fin) |
| 746 |
close(gin) |
| 747 |
end |
| 748 |
% This utilizes periodic geometry |
| 749 |
Fieldin(:,1)=Fieldin(:,end-1); |
| 750 |
Fieldin(:,end)=Fieldin(:,2); |
| 751 |
|
| 752 |
Fieldin(1,:)=Fieldin(end-1,:); |
| 753 |
Fieldin(end,:)=Fieldin(2,:); |
| 754 |
|
| 755 |
disp(['Interpolating gW:',num2str(k),'...']) |
| 756 |
Field0=griddata(xcin,ycin,Fieldin,xcout,ycout,'linear',{'Qt','Qbb','Qc','Qz'}); |
| 757 |
Fieldout=inpaint_nans(Field0,0); |
| 758 |
disp('Done.') |
| 759 |
|
| 760 |
disp(['Zeroing gW:',num2str(k),' within topography']) |
| 761 |
Fieldoutk(k,:,:)=Fieldout.*squeeze(HFacoutk(k,:,:)); |
| 762 |
disp('Done.') |
| 763 |
end |
| 764 |
|
| 765 |
for j=1:length(pickout) |
| 766 |
fout=netcdf([dirout '/' pickout(j).name],'write'); |
| 767 |
Xhere=fout{'X'}(:); |
| 768 |
Yhere=fout{'Y'}(:); |
| 769 |
[jj,ii]=find((Xhere(1)<=xcout).*(xcout<=Xhere(end)).*(Yhere(1)<=ycout).*(ycout<=Yhere(end))); |
| 770 |
fout{'gW'}(:,:,:)=Fieldoutk(:,min(jj):max(jj),min(ii):max(ii)); |
| 771 |
close(fout) |
| 772 |
end |
| 773 |
end %isempty(status) |
| 774 |
|
| 775 |
%U,gUnm1 is on XU,Rc |
| 776 |
%Note that there is already a periodic repeat in Uin... |
| 777 |
Xp1inext=[2*Xp1in(1)-Xp1in(2);Xp1in;2*Xp1in(end)-Xp1in(end-1)]; |
| 778 |
|
| 779 |
[xcin,ycin]=meshgrid(Xp1inext,Yinext); |
| 780 |
[xcout,ycout]=meshgrid(Xp1out,Yout); |
| 781 |
|
| 782 |
%%%%%%%%%%%%% HFacWoutk |
| 783 |
|
| 784 |
HFacout=ones(size(xcout)); |
| 785 |
HFacoutk=ones([length(Zcomp) size(xcout)]); |
| 786 |
|
| 787 |
disp(['Calculating HFacW...']) |
| 788 |
for j=1:length(gridout) |
| 789 |
gout=netcdf([dirout '/' gridout(j).name],'nowrite'); |
| 790 |
Xhere=gout{'Xp1'}(:); |
| 791 |
Yhere=gout{'Y'}(:); |
| 792 |
HFacouthere=gout{'HFacW'}(:,:,:); |
| 793 |
for ii=1:length(Xhere) |
| 794 |
for jj=1:length(Yhere) |
| 795 |
[jjj,iii]=find((Xhere(ii)==xcout).*(Yhere(jj)==ycout)); |
| 796 |
HFacoutk(:,jjj,iii)=HFacouthere(:,jj,ii); |
| 797 |
end |
| 798 |
end |
| 799 |
close(gout) |
| 800 |
end |
| 801 |
clear HFacouthere |
| 802 |
disp(['Done.']) |
| 803 |
|
| 804 |
%%%%%%%%%%%%%% U |
| 805 |
|
| 806 |
Fieldoutk=zeros([length(Zcomp) size(xcout)]); |
| 807 |
for k=1:length(Zcomp) |
| 808 |
Fieldin=NaN*ones(size(xcin)); |
| 809 |
Fieldout=NaN*ones(size(xcout)); |
| 810 |
|
| 811 |
for j=1:length(pickin) |
| 812 |
fin=netcdf([dirin '/' pickin(j).name],'nowrite'); |
| 813 |
gin=netcdf([dirin '/' gridin(j).name],'nowrite'); |
| 814 |
Xhere=fin{'Xp1'}(:); |
| 815 |
Yhere=fin{'Y'}(:); |
| 816 |
Fieldinhere=squeeze(fin{'U'}(snap,k,:,:)); |
| 817 |
HFacinhere=squeeze(gin{'HFacW'}(k,:,:)); |
| 818 |
for ii=1:length(Xhere) |
| 819 |
for jj=1:length(Yhere) |
| 820 |
[jjj,iii]=find((Xhere(ii)==xcin).*(Yhere(jj)==ycin)); |
| 821 |
Fieldin(jjj,iii)=Fieldinhere(jj,ii); |
| 822 |
if (HFacinhere(jj,ii)==0) |
| 823 |
Fieldin(jjj,iii)=NaN; |
| 824 |
end |
| 825 |
end |
| 826 |
end |
| 827 |
close(fin) |
| 828 |
close(gin) |
| 829 |
end |
| 830 |
% This utilizes periodic geometry |
| 831 |
%Note that there is already a periodic repeat in U... |
| 832 |
Fieldin(:,1)=Fieldin(:,end-2); |
| 833 |
Fieldin(:,end)=Fieldin(:,3); |
| 834 |
|
| 835 |
Fieldin(1,:)=Fieldin(end-1,:); |
| 836 |
Fieldin(end,:)=Fieldin(2,:); |
| 837 |
|
| 838 |
disp(['Interpolating U:',num2str(k),'...']) |
| 839 |
Field0=griddata(xcin,ycin,Fieldin,xcout,ycout,'linear',{'Qt','Qbb','Qc','Qz'}); |
| 840 |
Fieldout=inpaint_nans(Field0,0); |
| 841 |
disp('Done.') |
| 842 |
|
| 843 |
disp(['Zeroing U:',num2str(k),' within topography']) |
| 844 |
Fieldoutk(k,:,:)=Fieldout.*squeeze(HFacoutk(k,:,:)); |
| 845 |
disp('Done.') |
| 846 |
end |
| 847 |
|
| 848 |
for j=1:length(pickout) |
| 849 |
fout=netcdf([dirout '/' pickout(j).name],'write'); |
| 850 |
Xhere=fout{'Xp1'}(:); |
| 851 |
Yhere=fout{'Y'}(:); |
| 852 |
[jj,ii]=find((Xhere(1)<=xcout).*(xcout<=Xhere(end)).*(Yhere(1)<=ycout).*(ycout<=Yhere(end))); |
| 853 |
fout{'U'}(:,:,:)=Fieldoutk(:,min(jj):max(jj),min(ii):max(ii)); |
| 854 |
close(fout) |
| 855 |
end |
| 856 |
|
| 857 |
%%%%%%%%%%%%%% gUnm1 |
| 858 |
|
| 859 |
Fieldoutk=zeros([length(Zcomp) size(xcout)]); |
| 860 |
for k=1:length(Zcomp) |
| 861 |
Fieldin=NaN*ones(size(xcin)); |
| 862 |
Fieldout=NaN*ones(size(xcout)); |
| 863 |
|
| 864 |
for j=1:length(pickin) |
| 865 |
fin=netcdf([dirin '/' pickin(j).name],'nowrite'); |
| 866 |
gin=netcdf([dirin '/' gridin(j).name],'nowrite'); |
| 867 |
Xhere=fin{'Xp1'}(:); |
| 868 |
Yhere=fin{'Y'}(:); |
| 869 |
Fieldinhere=squeeze(fin{'gUnm1'}(snap,k,:,:)); |
| 870 |
HFacinhere=squeeze(gin{'HFacW'}(k,:,:)); |
| 871 |
for ii=1:length(Xhere) |
| 872 |
for jj=1:length(Yhere) |
| 873 |
[jjj,iii]=find((Xhere(ii)==xcin).*(Yhere(jj)==ycin)); |
| 874 |
Fieldin(jjj,iii)=Fieldinhere(jj,ii); |
| 875 |
if (HFacinhere(jj,ii)==0) |
| 876 |
Fieldin(jjj,iii)=NaN; |
| 877 |
end |
| 878 |
end |
| 879 |
end |
| 880 |
close(fin) |
| 881 |
close(gin) |
| 882 |
end |
| 883 |
% This utilizes periodic geometry |
| 884 |
%Note that there is already a periodic repeat in gUnm1... |
| 885 |
Fieldin(:,1)=Fieldin(:,end-2); |
| 886 |
Fieldin(:,end)=Fieldin(:,3); |
| 887 |
|
| 888 |
Fieldin(1,:)=Fieldin(end-1,:); |
| 889 |
Fieldin(end,:)=Fieldin(2,:); |
| 890 |
|
| 891 |
disp(['Interpolating gUnm1:',num2str(k),'...']) |
| 892 |
Field0=griddata(xcin,ycin,Fieldin,xcout,ycout,'linear',{'Qt','Qbb','Qc','Qz'}); |
| 893 |
Fieldout=inpaint_nans(Field0,0); |
| 894 |
disp('Done.') |
| 895 |
|
| 896 |
disp(['Zeroing gUnm1:',num2str(k),' within topography']) |
| 897 |
Fieldoutk(k,:,:)=Fieldout.*squeeze(HFacoutk(k,:,:)); |
| 898 |
disp('Done.') |
| 899 |
end |
| 900 |
|
| 901 |
for j=1:length(pickout) |
| 902 |
fout=netcdf([dirout '/' pickout(j).name],'write'); |
| 903 |
Xhere=fout{'Xp1'}(:); |
| 904 |
Yhere=fout{'Y'}(:); |
| 905 |
[jj,ii]=find((Xhere(1)<=xcout).*(xcout<=Xhere(end)).*(Yhere(1)<=ycout).*(ycout<=Yhere(end))); |
| 906 |
fout{'gUnm1'}(:,:,:)=Fieldoutk(:,min(jj):max(jj),min(ii):max(ii)); |
| 907 |
close(fout) |
| 908 |
end |
| 909 |
|
| 910 |
%V,gVnm1 is on XV,Rc |
| 911 |
|
| 912 |
%Note that there is already a periodic repeat in Vin... |
| 913 |
Yp1inext=[2*Yp1in(1)-Yp1in(2);Yp1in;2*Yp1in(end)-Yp1in(end-1)]; |
| 914 |
|
| 915 |
[xcin,ycin]=meshgrid(Xinext,Yp1inext); |
| 916 |
[xcout,ycout]=meshgrid(Xout,Yp1out); |
| 917 |
|
| 918 |
%%%%%%%%%%%%% HFacSoutk |
| 919 |
|
| 920 |
HFacout=ones(size(xcout)); |
| 921 |
HFacoutk=ones([length(Zcomp) size(xcout)]); |
| 922 |
|
| 923 |
disp(['Calculating HFacS...']) |
| 924 |
for j=1:length(gridout) |
| 925 |
gout=netcdf([dirout '/' gridout(j).name],'nowrite'); |
| 926 |
Xhere=gout{'X'}(:); |
| 927 |
Yhere=gout{'Yp1'}(:); |
| 928 |
HFacouthere=gout{'HFacS'}(:,:,:); |
| 929 |
for ii=1:length(Xhere) |
| 930 |
for jj=1:length(Yhere) |
| 931 |
[jjj,iii]=find((Xhere(ii)==xcout).*(Yhere(jj)==ycout)); |
| 932 |
HFacoutk(:,jjj,iii)=HFacouthere(:,jj,ii); |
| 933 |
end |
| 934 |
end |
| 935 |
close(gout) |
| 936 |
end |
| 937 |
clear HFacouthere |
| 938 |
disp(['Done.']) |
| 939 |
|
| 940 |
%%%%%%%%%%%%%% V |
| 941 |
|
| 942 |
Fieldoutk=zeros([length(Zcomp) size(xcout)]); |
| 943 |
for k=1:length(Zcomp) |
| 944 |
Fieldin=NaN*ones(size(xcin)); |
| 945 |
Fieldout=NaN*ones(size(xcout)); |
| 946 |
|
| 947 |
for j=1:length(pickin) |
| 948 |
fin=netcdf([dirin '/' pickin(j).name],'nowrite'); |
| 949 |
gin=netcdf([dirin '/' gridin(j).name],'nowrite'); |
| 950 |
Xhere=fin{'X'}(:); |
| 951 |
Yhere=fin{'Yp1'}(:); |
| 952 |
Fieldinhere=squeeze(fin{'V'}(snap,k,:,:)); |
| 953 |
HFacinhere=squeeze(gin{'HFacS'}(k,:,:)); |
| 954 |
for ii=1:length(Xhere) |
| 955 |
for jj=1:length(Yhere) |
| 956 |
[jjj,iii]=find((Xhere(ii)==xcin).*(Yhere(jj)==ycin)); |
| 957 |
Fieldin(jjj,iii)=Fieldinhere(jj,ii); |
| 958 |
if (HFacinhere(jj,ii)==0) |
| 959 |
Fieldin(jjj,iii)=NaN; |
| 960 |
end |
| 961 |
end |
| 962 |
end |
| 963 |
close(fin) |
| 964 |
close(gin) |
| 965 |
end |
| 966 |
% This utilizes periodic geometry |
| 967 |
%Note that there is already a periodic repeat in V... |
| 968 |
Fieldin(:,1)=Fieldin(:,end-1); |
| 969 |
Fieldin(:,end)=Fieldin(:,2); |
| 970 |
|
| 971 |
Fieldin(1,:)=Fieldin(end-2,:); |
| 972 |
Fieldin(end,:)=Fieldin(3,:); |
| 973 |
|
| 974 |
disp(['Interpolating V:',num2str(k),'...']) |
| 975 |
Field0=griddata(xcin,ycin,Fieldin,xcout,ycout,'linear',{'Qt','Qbb','Qc','Qz'}); |
| 976 |
Fieldout=inpaint_nans(Field0,0); |
| 977 |
disp('Done.') |
| 978 |
|
| 979 |
disp(['Zeroing V:',num2str(k),' within topography']) |
| 980 |
Fieldoutk(k,:,:)=Fieldout.*squeeze(HFacoutk(k,:,:)); |
| 981 |
disp('Done.') |
| 982 |
end |
| 983 |
|
| 984 |
for j=1:length(pickout) |
| 985 |
fout=netcdf([dirout '/' pickout(j).name],'write'); |
| 986 |
Xhere=fout{'X'}(:); |
| 987 |
Yhere=fout{'Yp1'}(:); |
| 988 |
[jj,ii]=find((Xhere(1)<=xcout).*(xcout<=Xhere(end)).*(Yhere(1)<=ycout).*(ycout<=Yhere(end))); |
| 989 |
fout{'V'}(:,:,:)=Fieldoutk(:,min(jj):max(jj),min(ii):max(ii)); |
| 990 |
close(fout) |
| 991 |
end |
| 992 |
|
| 993 |
%%%%%%%%%%%%%% gVnm1 |
| 994 |
|
| 995 |
Fieldoutk=zeros([length(Zcomp) size(xcout)]); |
| 996 |
for k=1:length(Zcomp) |
| 997 |
Fieldin=NaN*ones(size(xcin)); |
| 998 |
Fieldout=NaN*ones(size(xcout)); |
| 999 |
|
| 1000 |
for j=1:length(pickin) |
| 1001 |
fin=netcdf([dirin '/' pickin(j).name],'nowrite'); |
| 1002 |
gin=netcdf([dirin '/' gridin(j).name],'nowrite'); |
| 1003 |
Xhere=fin{'X'}(:); |
| 1004 |
Yhere=fin{'Yp1'}(:); |
| 1005 |
Fieldinhere=squeeze(fin{'gVnm1'}(snap,k,:,:)); |
| 1006 |
HFacinhere=squeeze(gin{'HFacS'}(k,:,:)); |
| 1007 |
for ii=1:length(Xhere) |
| 1008 |
for jj=1:length(Yhere) |
| 1009 |
[jjj,iii]=find((Xhere(ii)==xcin).*(Yhere(jj)==ycin)); |
| 1010 |
Fieldin(jjj,iii)=Fieldinhere(jj,ii); |
| 1011 |
if (HFacinhere(jj,ii)==0) |
| 1012 |
Fieldin(jjj,iii)=NaN; |
| 1013 |
end |
| 1014 |
end |
| 1015 |
end |
| 1016 |
close(fin) |
| 1017 |
close(gin) |
| 1018 |
end |
| 1019 |
% This utilizes periodic geometry |
| 1020 |
%Note that there is already a periodic repeat in gVnm1... |
| 1021 |
Fieldin(:,1)=Fieldin(:,end-1); |
| 1022 |
Fieldin(:,end)=Fieldin(:,2); |
| 1023 |
|
| 1024 |
Fieldin(1,:)=Fieldin(end-2,:); |
| 1025 |
Fieldin(end,:)=Fieldin(3,:); |
| 1026 |
|
| 1027 |
disp(['Interpolating gVnm1:',num2str(k),'...']) |
| 1028 |
Field0=griddata(xcin,ycin,Fieldin,xcout,ycout,'linear',{'Qt','Qbb','Qc','Qz'}); |
| 1029 |
Fieldout=inpaint_nans(Field0,0); |
| 1030 |
disp('Done.') |
| 1031 |
|
| 1032 |
disp(['Zeroing gVnm1:',num2str(k),' within topography']) |
| 1033 |
Fieldoutk(k,:,:)=Fieldout.*squeeze(HFacoutk(k,:,:)); |
| 1034 |
disp('Done.') |
| 1035 |
end |
| 1036 |
|
| 1037 |
for j=1:length(pickout) |
| 1038 |
fout=netcdf([dirout '/' pickout(j).name],'write'); |
| 1039 |
Xhere=fout{'X'}(:); |
| 1040 |
Yhere=fout{'Yp1'}(:); |
| 1041 |
[jj,ii]=find((Xhere(1)<=xcout).*(xcout<=Xhere(end)).*(Yhere(1)<=ycout).*(ycout<=Yhere(end))); |
| 1042 |
fout{'gVnm1'}(:,:,:)=Fieldoutk(:,min(jj):max(jj),min(ii):max(ii)); |
| 1043 |
close(fout) |
| 1044 |
end |
| 1045 |
|
| 1046 |
|
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