/[MITgcm]/MITgcm/tools/tst_2+2
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Revision 1.9 - (show annotations) (download)
Wed Dec 8 16:47:11 2010 UTC (8 years, 5 months ago) by jmc
Branch: MAIN
CVS Tags: checkpoint63d, checkpoint63a, checkpoint63b, checkpoint63c, checkpoint63, checkpoint62s, checkpoint62r, checkpoint62q, checkpoint62p, checkpoint62w, checkpoint62v, checkpoint62u, checkpoint62t, checkpoint62z, checkpoint62y, checkpoint62x
Changes since 1.8: +3 -3 lines
when running 2+2 test, keep "globalFiles" and comment out "pickupStrictlyMatch"

1 #! /usr/bin/env bash
2
3 # $Header: /u/gcmpack/MITgcm/tools/tst_2+2,v 1.8 2010/01/04 17:43:35 jmc Exp $
4 # $Name: $
5
6 rnp_loc()
7 {
8 # rnp_loc arg_1 arg_2
9 # rename files with prefix = 'arg_1' to files with prefix = 'arg_2'
10 if [ $prt -ge 1 ] ; then echo ' rnp_loc:' $1 $2 ; fi
11 # rnp -s $1 $2
12 listY=`ls -1 $1*`
13 for yy in $listY
14 do
15 zz=`echo $yy | sed "s/^$1/$2/"`
16 if [ $prt -ge 2 ] ; then echo ' '$cmdMV $yy $zz ; fi
17 if test $action = 1 ; then $cmdMV $yy $zz ; fi
18 done
19 }
20
21 #-----------
22
23 move_outp()
24 {
25 # move_outp arg_1
26 # move mitgcm output files to directory 'arg_1'
27 if [ $prt -ge 1 ] ; then echo ' move_outp:' $1 ; fi
28 mv *.data *.meta $1
29 listF=`ls -1 *.txt STD???.00?? 2> /dev/null`
30 if test "x$listF" != x ; then mv $listF $1 ; fi
31 #- move back sym link:
32 listL=`find $1 -type l`
33 ttd=`echo $listL | wc -w`
34 #echo "ttd=$ttd"
35 if test $ttd != 0 ; then
36 #echo "listL='$listL'"
37 if [ $prt -ge 2 ] ; then echo " mv back:" $listL | sed "s/$1\///g" ; fi
38 mv $listL .
39 fi
40 }
41
42 #---------------------------
43
44 #- exit status:
45 # 0 -> test is successful
46 # 1 -> fail in 1rst run
47 # 2 -> fail in 2nd run
48 # 3 -> fail in 3rd run
49 # 4 -> pickup*.data (written at the end of 2+2 & 4 it run) are different
50 # 5 -> pickup*.meta (written at the end of 2+2 & 4 it run) are different
51 # 6 -> missing 'data.tst' file (removed or not yet generated ?)
52 # 7 -> missing standard output from previous run
53 # 8 -> missing information (in standard output of previous run) about pickup
54 # 9 -> error in argument list
55
56 #- default:
57 Nit=2
58 prt=1 # 1 = print some informations ; 2 = print more informations
59 action=1
60 cmdMV='mv -f'
61 tmpDir='temp_tst'
62 wait2run=0 # if needs sometime for file system syncro on all nodes
63
64 #- default executable, command-line , using MPI:
65 gcmEXE=./mitgcmuv
66 cmdEXE=
67 mpi=0
68
69 nArg=$#
70 prev=
71 for xx ; do
72 #echo "xx='$xx'"
73 # If the previous option needs an argument, assign it.
74 if test -n "$prev"; then
75 eval "$prev=\$xx"
76 prev=
77 nArg=`expr $nArg - 2`
78 continue
79 fi
80
81 case $xx in
82 -mpi ) mpi=1 ; nArg=`expr $nArg - 1` ;;
83 -exe ) prev=gcmEXE ;;
84 -command ) prev=cmdEXE ;;
85 *) flag=$xx ;;
86 esac
87 done
88 #echo "cmdEXE='$cmdEXE'"
89 #echo "nArg=$nArg ; mpi=$mpi ; flag='$flag'"
90
91 case $nArg in
92 1) ;;
93 *) echo "Usage: `basename $0` flag [-mpi] [-exe EXECUTABLE] [-command COMMAND]"
94 echo " Check restart: compare 1 run of 2 x $Nit it long"
95 echo " with 2 consecutive runs of $Nit it long each"
96 echo " where: flag = 0 -> prepare (from a previous run) pickup & data files"
97 echo " flag = 1 -> do the 3 runs (using COMMAND"
98 echo " or simply using EXECUTABLE, default=$gcmEXE)"
99 echo " flag = 2 -> compare std_outp"
100 echo " flag = 3 -> compare pickup files"
101 echo " flag = 4 -> clean-up output files"
102 echo " flag = NC -> do 0,1,2,3 sequentially (no cleaning)"
103 echo " flag = All -> do 0,1,2,3,4 sequentially"
104 exit 9 ;;
105 esac
106 if test $flag = 'NC' -o $flag = 'All' ; then Multi=1 ; else Multi=0 ; fi
107
108 #-- set the run-command :
109 if test "x$cmdEXE" = x
110 then
111 if [ $mpi -ge 1 ] ; then
112 cmdEXE="mpirun -machinefile ../../mf -v -np 2 $gcmEXE"
113 else
114 cmdEXE=$gcmEXE
115 fi
116 fi
117 echo "cmdEXE='$cmdEXE'"
118 #=========================
119
120 if test $flag = '0' -o $Multi = '1' ; then
121 #----------------------------------------------------------------------
122 # last pickup written (from previous run):
123 if [ $mpi -ge 1 ]
124 then outpRun='STDOUT.0000'
125 else outpRun='output.txt'
126 fi
127 if test -r $outpRun
128 then
129 # grep ' %CHECKPOINT ' $outpRun | tail -1
130 lastPick=`grep ' %CHECKPOINT ' $outpRun | sed 's/^.*%CHECKPOINT //' | tail -1`
131 if test "x$lastPick" = x
132 then
133 echo "no pickup information written in '$outpRun' from previous run"
134 exit 8
135 else
136 iter=`echo $lastPick | awk '{print $1}'`
137 sufx=`echo $lastPick | awk '{print $2}'`
138 echo "from previous run std.outp, lastPick='$lastPick' ; iter='$iter' ; sufx='$sufx'"
139 fi
140 else
141 echo "no standard output file '$outpRun' from previous run"
142 exit 7
143 fi
144
145 #-------------------------
146 echo "prepare parameter file 'data.tst' :"
147 cp -p -f data data.tst
148 listOut='startTime endTime nIter0 nTimeSteps nEndIter chkPtFreq pChkPtFreq'
149 listOut=$listOut' pickupSuff usePickupBeforeC54 mdsioLocalDir pickupStrictlyMatch'
150 #- comment out (in data.tst) all parameters from list: 'listOut'
151 for yy in $listOut
152 do
153 if [ $prt -ge 2 ] ; then echo -n ' commenting out:' $yy ; fi
154 nn=`grep -i -c "^ *$yy *=" data.tst`
155 if [ $nn -ge 1 ]
156 then
157 listN=`grep -i -n "^ *$yy *=" data.tst | sed 's/:.*$//'`
158 if [ $prt -ge 2 ] ; then echo " : found on line: $listN" ; fi
159 for ll in $listN
160 do
161 sed "$ll s/^./#&/" data.tst > data.tmp_$$
162 # diff data.tmp_$$ data.tst
163 mv -f data.tmp_$$ data.tst
164 done
165 else if [ $prt -ge 2 ] ; then echo ' : not found' ; fi
166 fi
167 done
168 if [ $prt -ge 2 ] ; then echo ' ' ; fi
169 # add nIter0 & nTimeSteps in namelist "PARM03":
170 Dbl=`expr $Nit \* 2`
171 sed "/^ *\&PARM03/a \ nTimeSteps=$Dbl," data.tst > data.tmp_$$
172 mv -f data.tmp_$$ data.tst
173 sed "/^ *\&PARM03/a \ nIter0=$iter," data.tst > data.tmp_$$
174 mv -f data.tmp_$$ data.tst
175 echo "prepare file 'data.tst' : done"
176 if [ $prt -ge 1 ] ; then
177 echo ' diff data.tst data' ; diff data.tst data ; echo ' ' ;
178 fi
179 #---- clean up current dir: move output to temp_tst dir:
180 if test $action = 1 ; then
181 rm -rf $tmpDir
182 mkdir $tmpDir
183 mv -f *.data $tmpDir
184 mv -f *.meta $tmpDir
185 mv -f *.txt $tmpDir 2> /dev/null
186 mv -f STD???.0[0-9][0-9][0-9] $tmpDir
187 #- move main parameter file "data":
188 mv -f data $tmpDir
189 #- do not deal with MNC pickup at all:
190 cp -p -f data.pkg data.tmp_$$
191 mv -f data.pkg $tmpDir
192 mv -f data.tmp_$$ data.pkg
193 yy='useMNC'
194 if [ $prt -ge 2 ] ; then echo -n " commenting out: $yy in data.pkg" ; fi
195 nn=`grep -i -c "^ *$yy *=" data.pkg`
196 if [ $nn -ge 1 ]
197 then
198 listN=`grep -i -n "^ *$yy *=" data.pkg | sed 's/:.*$//'`
199 if [ $prt -ge 2 ] ; then echo " : found on line: $listN" ; fi
200 for ll in $listN
201 do
202 sed "$ll s/^./#&/" data.pkg > data.tmp_$$
203 if [ $prt -ge 1 ] ; then echo ' changes in data.pkg'
204 diff data.tmp_$$ data.pkg ; echo ' ' ; fi
205 mv -f data.tmp_$$ data.pkg
206 done
207 else if [ $prt -ge 2 ] ; then echo ' : not found' ; echo ' ' ; fi
208 fi
209 fi
210 #-------------------------
211 #-- link back pickup files
212 listS=`ls $tmpDir/pickup*.${sufx}* 2> /dev/null | head -1`
213 if test "x$listS" != x ; then
214 if [ $prt -ge 1 ] ; then echo ' link back:' $tmpDir'/pickup*.'${sufx}'*' ; fi
215 if test $action = 1 ; then ln -s $tmpDir/pickup*.${sufx}* . ; fi
216 fi
217 #- rename pickup (if needed)
218 nIt0c=`printf "%10.10i\n" $iter`
219 if test $sufx = $nIt0c
220 then
221 echo "no need to change pickup sufix"
222 else
223 listP=`ls pickup*.${sufx}* 2> /dev/null | sed 's/\..*//g' | uniq`
224 if test "x$listP" = x
225 then echo ' rename' $sufx '->' $nIt0c ': no file to rename'
226 else
227 if [ $prt -ge 1 ] ; then echo ' rename' $sufx '->' $nIt0c 'for all:' $listP ; fi
228 for yy in $listP
229 do
230 rnp_loc $yy.${sufx} $yy.$nIt0c
231 done
232 fi
233 fi
234 #----------------------------------------------------------------------
235 fi
236
237 #=========================
238
239 if test -r data.tst ; then
240 #- extract length of runs & starting iter number from file "data.tst"
241 num0=`sed -n 's/^ nIter0=//p' data.tst | sed 's/,//g' | sed 's/ //g'`
242 Dbl=`sed -n 's/^ nTimeSteps=//p' data.tst | sed 's/,//g'`
243 Nit=`expr $Dbl / 2`
244 # Nit = Nb of iter of 2nd & 3rd run (1rst one is 2 x Nit iter long)
245 else
246 echo '=> Need a readable "data.tst" file for the 2 x Nit iterations run'
247 exit 6
248 fi
249
250 #- dir where to put the results :
251 dir1=res_2it
252 dir2=res_1iA
253 dir3=res_1iB
254
255 #---------------------------
256 num1=`expr $num0 + $Nit`
257 num2=`expr $num0 + $Dbl`
258 num0c=`printf "%10.10i\n" $num0`
259 num1c=`printf "%10.10i\n" $num1`
260 num2c=`printf "%10.10i\n" $num2`
261 echo " start-end iter: $num0 , $num1 , $num2"
262 echo " sufix: '$num0c' '$num1c' '$num2c'"
263 echo ' cmdEXE='$cmdEXE
264 #exit
265 #---------------------------
266
267 if test $flag = '1' -o $Multi = '1' ; then
268 #----------------------------------------------------------------------
269 #- check at the end of each run for pickup with prefix:
270 pref='pickup'
271 offLine=`grep -i -c '^ *useOffLine *= *\.TRUE\.' data.pkg`
272 if [ $offLine -ge 1 ] ; then pref='pickup_ptracers' ; fi
273 #---------------------------
274 if test -d $dir1 -o -d $dir2 -o -d $dir3
275 then echo -n 'remove dir: '
276 if test -d $dir1 ; then echo -n $dir1 ' , ' ; rm -r $dir1 ; fi
277 if test -d $dir2 ; then echo -n $dir2 ' , ' ; rm -r $dir2 ; fi
278 if test -d $dir3 ; then echo -n $dir3 ' , ' ; rm -r $dir3 ; fi
279 echo ' '
280 fi
281 mkdir $dir1 $dir2 $dir3
282 rm -f STDERR.0000
283
284 #--- 1rst run ( 2 x Nit iter )
285 cp -p data.tst data
286 echo '==> START RUN 2 x' $Nit 'it'
287 if [ $mpi -ge 1 ]
288 then
289 sleep $wait2run
290 $cmdEXE > TTT.out.2it 2>&1
291 mv STDOUT.0000 std_outp.2it
292 cat TTT.out.2it
293 else $cmdEXE > std_outp.2it
294 fi
295 mv STDERR.0000 std__err.2it
296 out=`egrep -c 'STOP ABNORMAL END' std_outp.2it`
297 if test $out != 0
298 then echo "==> RUN 2 x $Nit it : ABNORMAL END => exit" ; exit 1 ; fi
299 listF=`ls -1 $pref.ckptA*.data 2> /dev/null`
300 if test "x$listF" = x
301 then echo "==> RUN 2 x $Nit it STOP without writing $pref => exit" ; exit 1
302 else echo "==> END RUN 2 x $Nit it" ; fi
303 listP=`ls pickup*.ckptA* | sed 's/\..*//g' | uniq`
304 echo ' listP=' $listP
305 for xx in $listP
306 do
307 rnp_loc $xx.ckptA $xx.$num2c
308 done
309 move_outp $dir1
310 #--- 2nd run ( Nit iter , restart from same Iter = num0 as 1rst run )
311 sed "s/^ nTimeSteps=$Dbl/ nTimeSteps=$Nit/g" data.tst > data.tmp
312 mv -f data.tmp data
313 echo '==> START RUN 1iA'
314 if [ $mpi -ge 1 ]
315 then
316 sleep $wait2run
317 $cmdEXE > TTT.out.1iA 2>&1
318 mv STDOUT.0000 std_outp.1iA
319 cat TTT.out.1iA
320 else $cmdEXE > std_outp.1iA
321 fi
322 mv STDERR.0000 std__err.1iA
323 out=`egrep -c 'STOP ABNORMAL END' std_outp.1iA`
324 if test $out != 0
325 then echo "==> RUN 1iA : ABNORMAL END => exit" ; exit 2 ; fi
326 listF=`ls -1 $pref.ckptA*.data 2> /dev/null`
327 if test "x$listF" = x
328 then echo "==> RUN 1iA STOP without writing $pref => exit" ; exit 2
329 else echo "==> END RUN 1iA" ; fi
330 for xx in $listP
331 do
332 rnp_loc $xx.ckptA $xx.$num1c
333 done
334 move_outp $dir2
335 #--- 3rd run ( Nit iter , restart from 2nd )
336 ln -s $dir2/pickup*.$num1c.* .
337 sed "s/^ nIter0=$num0/ nIter0=$num1/g" data > data.tmp
338 mv -f data.tmp data
339 echo '==> START RUN 1iB'
340 if [ $mpi -ge 1 ]
341 then
342 sleep $wait2run
343 $cmdEXE > TTT.out.1iB 2>&1
344 mv STDOUT.0000 std_outp.1iB
345 cat TTT.out.1iB
346 else $cmdEXE > std_outp.1iB
347 fi
348 mv STDERR.0000 std__err.1iB
349 out=`egrep -c 'STOP ABNORMAL END' std_outp.1iB`
350 if test $out != 0
351 then echo "==> RUN 1iB : ABNORMAL END => exit" ; exit 3 ; fi
352 listF=`ls -1 $pref.ckptA*.data 2> /dev/null`
353 if test "x$listF" = x
354 then echo "==> RUN 1iB STOP without writing $pref => exit" ; exit 3
355 else echo "==> END RUN 1iB" ; fi
356 for xx in $listP
357 do
358 rnp_loc $xx.ckptA $xx.$num2c
359 done
360 # remove pickup*.$mun1c* sym-link:
361 find . ! -name . -prune -type l -name 'pickup*.'${num1c}'*' -exec rm {} \;
362 move_outp $dir3
363 rm data
364 #----------------------------------------------------------------------
365 fi
366
367 if test $flag = '2' -o $Multi = '1' ; then
368 #----------------------------------------------------------------------
369 listCGini="2"
370 #-- check if using 3-D solver
371 nn=`grep -i -c "^ *nonHydrostatic *= *\.TRUE\." data.tst`
372 if [ $nn -eq 0 ] ; then
373 nn=`grep -i -c "^ *implicitIntGravWave *= *\.TRUE\." data.tst`
374 fi
375 if [ $nn -ge 1 ] ; then listCGini="$listCGini 3"; fi
376 for nn in $listCGini
377 do
378 echo ' ' ; echo "== compare cg${nn}d_init_res :"
379 echo ' run 1iA:'
380 grep "cg${nn}d_init_res" std_outp.1iA \
381 | sed "s/.* cg${nn}d_init_res =//"
382 echo ' run 1iB:'
383 grep "cg${nn}d_init_res" std_outp.1iB \
384 | sed "s/.* cg${nn}d_init_res =//"
385 echo ' run 2it:'
386 grep "cg${nn}d_init_res" std_outp.2it \
387 | sed "s/.* cg${nn}d_init_res =//"
388 done
389 #----------------------------------------------------------------------
390 fi
391
392 if test $flag = '3' -o $Multi = '1' ; then
393 #----------------------------------------------------------------------
394 echo ' '
395 echo "== diff pickup files : end of 1rst run (2x$Nit it) & end of 3rd run (2nd $Nit it)"
396 listP=`( cd $dir1 ; ls pickup*.$num2c* | sed 's/\..*//g' | uniq )`
397 chkmeta='Y'
398 for yy in $listP
399 do
400 listY=`(cd $dir1 ; ls $yy.$num2c*.data | sed "s/$yy\.$num2c//" | sed "s/data$//")`
401 zz=$yy.$num2c
402 echo '--> file='$zz', listY='$listY
403 for xx in $listY
404 do
405 echo ' diff' $dir1/$zz${xx}data $dir3
406 diff $dir1/$zz${xx}data $dir3
407 out=$?
408 if test $out != 0 ; then
409 echo 'Diff outp=' $out ' ==> stop'
410 exit 4
411 fi
412 if test $chkmeta = 'Y' -a -f $dir1/$zz${xx}meta ; then
413 echo ' diff' $dir1/$zz${xx}meta $dir3
414 diff $dir1/$zz${xx}meta $dir3
415 out=$?
416 if test $out != 0 ; then
417 echo 'Diff outp=' $out ' ==> stop'
418 exit 5
419 fi
420 fi
421 done
422 done
423 #----------------------------------------------------------------------
424 fi
425
426 if test $flag = '4' -o $flag = 'All' ; then
427 #-------------
428 echo ' '
429 echo "== clean-up and reset :"
430 echo '--> remove pickup*.'$num0c'* sym-links:'
431 #find . ! -name . -prune -type l -name 'pickup*.'${num0c}'*' -exec rm {} \;
432 listS=`find . ! -name . -prune -type l -name 'pickup*.'${num0c}'*'`
433 if [ $prt -ge 2 ] ; then echo ' rm' $listS ; fi
434 rm -f $listS
435 echo '--> remove output dir and output files:'
436 echo ' rm -rf' $dir1 $dir2 $dir3
437 rm -rf $dir1 $dir2 $dir3
438 echo ' rm -f' std_????.?i?
439 rm -f std_????.?i?
440 rm -f TTT.out.?i? 2> /dev/null
441 echo ' rm -f' data.pkg data.tst
442 rm -f data.pkg data.tst
443 #- move back files from temp_tst dir:
444 if test -d $tmpDir ; then
445 echo "--> move back files from 'temp_tst' dir."
446 cd $tmpDir ; mv -f * .. ; cd ..
447 rmdir $tmpDir
448 fi
449 #-------------
450 fi
451 exit 0

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