/[MITgcm]/MITgcm/tools/tst_2+2
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Revision 1.2 - (show annotations) (download)
Fri Feb 27 22:58:57 2009 UTC (11 years, 4 months ago) by jmc
Branch: MAIN
Changes since 1.1: +80 -45 lines
modified for MPI test

1 #! /usr/bin/env bash
2
3 # $Header: /u/gcmpack/MITgcm/tools/tst_2+2,v 1.1 2007/12/25 22:07:54 jmc Exp $
4 # $Name: $
5
6 run_mpi()
7 {
8 # run_mpi output_file
9 echo "execute: '$RUNMPI'"
10 $RUNMPI
11 if test $# = 1
12 then mv STDOUT.0000 $1
13 echo 'mv STDOUT.0000' $1
14 fi
15 }
16
17 rnp_loc()
18 {
19 # rnp_loc arg_1 arg_2
20 # rename files with prefix = 'arg_1' to files with prefix = 'arg_2'
21 echo ' rnp_loc:' $1 $2
22 # rnp -s $1 $2
23 listY=`ls -1 $1*`
24 for yy in $listY
25 do
26 zz=`echo $yy | sed "s/^$1/$2/"`
27 mv $yy $zz
28 done
29 }
30
31 #---------------------------
32
33 #- exit status:
34 # 0 -> test is successful
35 # 1 -> fail in 1rst run
36 # 2 -> fail in 2nd run
37 # 3 -> fail in 3rd run
38 # 4 -> pickup*.data (written at the end of 2+2 & 4 it run) are different
39 # 5 -> pickup*.meta (written at the end of 2+2 & 4 it run) are different
40 # 6 -> missing 'data.tst' file (removed or not yet generated ?)
41 # 7 -> missing standard output from previous run
42 # 8 -> missing information (in standard output of previous run) about pickup
43 # 9 -> error in argument list
44
45 #- default:
46 Nit=2
47 prt=1 # 1 = print some informations ; 2 = print more informations
48 action=1
49 cmdMV='mv -f'
50 tmpDir='temp_tst'
51
52 #- default executable, command-line , using MPI:
53 gcmEXE=./mitgcmuv
54 cmdEXE=
55 mpi=0
56
57 nArg=$#
58 prev=
59 for xx ; do
60 #echo "xx='$xx'"
61 # If the previous option needs an argument, assign it.
62 if test -n "$prev"; then
63 eval "$prev=\$xx"
64 prev=
65 nArg=`expr $nArg - 2`
66 continue
67 fi
68
69 case $xx in
70 -mpi ) mpi=1 ; nArg=`expr $nArg - 1` ;;
71 -exe ) prev=gcmEXE ;;
72 -command ) prev=cmdEXE ;;
73 *) flag=$xx ;;
74 esac
75 done
76 echo "cmdEXE='$cmdEXE' ; RUNMPI='$RUNMPI'"
77 echo "nArg=$nArg ; mpi=$mpi ; flag='$flag'"
78
79 case $nArg in
80 1) ;;
81 *) echo "Usage: `basename $0` flag [-mpi] [-exe EXECUTABLE] [-command COMMAND]"
82 echo " Check restart: compare 1 run of 2 x $Nit it long"
83 echo " with 2 consecutive runs of $Nit it long each"
84 echo " where: flag = 0 -> prepare (from a previous run) pickup & data files"
85 echo " flag = 1 -> do the 3 runs (using COMMAND"
86 echo " or simply using EXECUTABLE, default=$gcmEXE)"
87 echo " flag = 2 -> compare std_outp"
88 echo " flag = 3 -> compare pickup files"
89 echo " flag = 4 -> clean-up output files"
90 echo " flag = All -> do 0,1,2,3,4 sequentially"
91 exit 9 ;;
92 esac
93
94 #-- set the run-command :
95 if test "x$cmdEXE" = x
96 then
97 RUNMPI="mpirun -machinefile ../../mf -v -np 2 $gcmEXE"
98 cmdEXE=$gcmEXE
99 else
100 RUNMPI="$cmdEXE"
101 fi
102 if [ $mpi -ge 1 ] ; then cmdEXE=run_mpi ; fi
103 echo "cmdEXE='$cmdEXE' ; RUNMPI='$RUNMPI'"
104 #=========================
105
106 if test $flag = '0' -o $flag = 'All' ; then
107 #----------------------------------------------------------------------
108 # last pickup written (from previous run):
109 if [ $mpi -ge 1 ]
110 then outpRun='STDOUT.0000'
111 else outpRun='output.txt'
112 fi
113 if test -r $outpRun
114 then
115 # grep ' %CHECKPOINT ' $outpRun | tail -1
116 lastPick=`grep ' %CHECKPOINT ' $outpRun | sed 's/^.*%CHECKPOINT //' | tail -1`
117 if test "x$lastPick" = x
118 then
119 echo "no pickup information written in '$outpRun' from previous run"
120 exit 8
121 else
122 iter=`echo $lastPick | awk '{print $1}'`
123 zz=`echo $lastPick | awk '{print $2}'`
124 echo "from previous run std.outp, lastPick='$lastPick' ; iter='$iter' ; zz='$zz'"
125 fi
126 else
127 echo "no standard output file '$outpRun' from previous run"
128 exit 7
129 fi
130
131 #- rename pickup (if needed)
132 sufx=`printf "%10.10i\n" $iter`
133 if test $zz = $sufx
134 then
135 echo "no need to change pickup sufix"
136 else
137 # echo "rename pickup sufix: $zz -> $sufx"
138 listP=`ls pickup*.${zz}* 2> /dev/null | sed 's/\..*//g' | uniq`
139 if test "x$listP" = x
140 then echo ' rename' $zz '->' $sufx ': no file to rename'
141 else
142 if [ $prt -ge 1 ] ; then echo ' rename' $zz '->' $sufx 'for all:' $listP ; fi
143 for yy in $listP
144 do
145 listF=`ls -1 $yy.${zz}*`
146 for xx in $listF
147 do
148 new=`echo $xx | sed "s/^$yy\.$zz/$yy\.$sufx/"`
149 if [ $prt -ge 2 ] ; then echo ' '$cmdMV $xx $new ; fi
150 if test $action = 1 ; then $cmdMV $xx $new ; fi
151 done
152 done
153 fi
154 fi
155 #-------------------------
156 echo "prepare parameter file 'data.tst' :"
157 cp -p -f data data.tst
158 listOut='startTime endTime nIter0 nTimeSteps nEndIter chkPtFreq pChkPtFreq globalFiles'
159 listOut=$listOut' useSingleCpuIO pickupSuff usePickupBeforeC54 mdsioLocalDir'
160 #- comment out (in data.tst) all parameters from list: 'listOut'
161 for yy in $listOut
162 do
163 if [ $prt -ge 2 ] ; then echo -n ' commenting out:' $yy ; fi
164 nn=`grep -i -c "^ *$yy *=" data.tst`
165 if [ $nn -ge 1 ]
166 then
167 listN=`grep -i -n "^ *$yy *=" data.tst | sed 's/:.*$//'`
168 if [ $prt -ge 2 ] ; then echo " : found on line: $listN" ; fi
169 for ll in $listN
170 do
171 sed "$ll s/^./#&/" data.tst > data.tmp_$$
172 # diff data.tmp_$$ data.tst
173 mv -f data.tmp_$$ data.tst
174 done
175 else if [ $prt -ge 2 ] ; then echo ' : not found' ; fi
176 fi
177 done
178 if [ $prt -ge 2 ] ; then echo ' ' ; fi
179 # add nIter0 & nTimeSteps in namelist "PARM03":
180 Dbl=`expr $Nit \* 2`
181 sed "/^ *\&PARM03/a \ nTimeSteps=$Dbl," data.tst > data.tmp_$$
182 mv -f data.tmp_$$ data.tst
183 sed "/^ *\&PARM03/a \ nIter0=$iter," data.tst > data.tmp_$$
184 mv -f data.tmp_$$ data.tst
185 echo "prepare file 'data.tst' : done"
186 if [ $prt -ge 1 ] ; then
187 echo ' diff data.tst data' ; diff data.tst data ; echo ' ' ;
188 fi
189 #---- clean up current dir: move output to temp_tst dir:
190 if test $action = 1 ; then
191 rm -rf $tmpDir
192 mkdir $tmpDir
193 mv -f *.data $tmpDir
194 mv -f *.meta $tmpDir
195 mv -f *.txt $tmpDir
196 mv -f STD???.0[0-9][0-9][0-9] $tmpDir
197 listS=`ls $tmpDir/pickup*.${sufx}* 2> /dev/null | head -1`
198 if test "x$listS" != x ; then mv $tmpDir/pickup*.${sufx}* . ; fi
199 #- move main parameter file "data":
200 mv -f data $tmpDir
201 #- do not deal with MNC pickup at all:
202 cp -p -f data.pkg data.tmp_$$
203 mv -f data.pkg $tmpDir
204 mv -f data.tmp_$$ data.pkg
205 yy='useMNC'
206 if [ $prt -ge 2 ] ; then echo -n " commenting out: $yy in data.pkg" ; fi
207 nn=`grep -i -c "^ *$yy *=" data.pkg`
208 if [ $nn -ge 1 ]
209 then
210 listN=`grep -i -n "^ *$yy *=" data.pkg | sed 's/:.*$//'`
211 if [ $prt -ge 2 ] ; then echo " : found on line: $listN" ; fi
212 for ll in $listN
213 do
214 sed "$ll s/^./#&/" data.pkg > data.tmp_$$
215 if [ $prt -ge 1 ] ; then echo ' changes in data.pkg'
216 diff data.tmp_$$ data.pkg ; echo ' ' ; fi
217 mv -f data.tmp_$$ data.pkg
218 done
219 else if [ $prt -ge 2 ] ; then echo ' : not found' ; echo ' ' ; fi
220 fi
221 fi
222 #----------------------------------------------------------------------
223 fi
224
225 #=========================
226
227 if test -r data.tst ; then
228 #- extract length of runs & starting iter number from file "data.tst"
229 num0=`sed -n 's/^ nIter0=//p' data.tst | sed 's/,//g' | sed 's/ //g'`
230 Dbl=`sed -n 's/^ nTimeSteps=//p' data.tst | sed 's/,//g'`
231 Nit=`expr $Dbl / 2`
232 # Nit = Nb of iter of 2nd & 3rd run (1rst one is 2 x Nit iter long)
233 else
234 echo '=> Need a readable "data.tst" file for the 2 x Nit iterations run'
235 exit 6
236 fi
237
238 #- dir where to put the results :
239 dir1=res_2it
240 dir2=res_1iA
241 dir3=res_1iB
242
243 #---------------------------
244 num1=`expr $num0 + $Nit`
245 num2=`expr $num0 + $Dbl`
246 num0c=`printf "%10.10i\n" $num0`
247 num1c=`printf "%10.10i\n" $num1`
248 num2c=`printf "%10.10i\n" $num2`
249 echo " start-end iter: $num0 , $num1 , $num2"
250 echo " sufix: '$num0c' '$num1c' '$num2c'"
251 echo ' cmdEXE='$cmdEXE
252 #exit
253 #---------------------------
254
255 if test $flag = '1' -o $flag = 'All' ; then
256 #----------------------------------------------------------------------
257 #- check at the end of each run for pickup with prefix:
258 pref='pickup'
259 offLine=`grep -i -c '^ *useOffLine *= *\.TRUE\.' data.pkg`
260 if [ $offLine -ge 1 ] ; then pref='pickup_ptracers' ; fi
261 #---------------------------
262 if test -d $dir1 -o -d $dir2 -o -d $dir3
263 then echo -n 'remove dir: '
264 if test -d $dir1 ; then echo -n $dir1 ' , ' ; rm -r $dir1 ; fi
265 if test -d $dir2 ; then echo -n $dir2 ' , ' ; rm -r $dir2 ; fi
266 if test -d $dir3 ; then echo -n $dir3 ' , ' ; rm -r $dir3 ; fi
267 echo ' '
268 fi
269 mkdir $dir1 $dir2 $dir3
270 rm -f STDERR.0000
271
272 #--- 1rst run ( 2 x Nit iter )
273 cp -p data.tst data
274 echo '==> START RUN 2 x' $Nit 'it'
275 if [ $mpi -ge 1 ]
276 then $cmdEXE std_outp.2it > TTT.out.2it 2>&1
277 else $cmdEXE > std_outp.2it
278 fi
279 mv STDERR.0000 std__err.2it
280 out=`egrep -c 'STOP ABNORMAL END' std_outp.2it`
281 if test $out != 0
282 then echo "==> RUN 2 x $Nit it : ABNORMAL END => exit" ; exit 1 ; fi
283 if test -f $pref.ckptA.001.001.data
284 then echo "==> END RUN 2 x $Nit it"
285 else echo "==> RUN 2 x $Nit it STOP without writing $pref => exit" ; exit 1 ; fi
286 listP=`ls pickup*.ckptA* | sed 's/\..*//g' | uniq`
287 echo ' listP=' $listP
288 for xx in $listP
289 do
290 rnp_loc $xx.ckptA $xx.$num2c
291 done
292 mv *.0??.0??.* $dir1
293 txtF=`ls -1 *.txt 2> /dev/null`
294 mv R?.data R?.meta DR?.data DR?.meta $txtF $dir1
295 listS=`ls $dir1/pickup*.${num0c}* 2> /dev/null | head -1`
296 if test "x$listS" != x ; then mv $dir1/pickup*.${num0c}* . ; fi
297 #--- 2nd run ( Nit iter , restart from same Iter = num0 as 1rst run )
298 sed "s/^ nTimeSteps=$Dbl/ nTimeSteps=$Nit/g" data.tst > data
299 echo '==> START RUN 1iA'
300 if [ $mpi -ge 1 ]
301 then $cmdEXE std_outp.1iA > TTT.out.1iA 2>&1
302 else $cmdEXE > std_outp.1iA
303 fi
304 mv STDERR.0000 std__err.1iA
305 out=`egrep -c 'STOP ABNORMAL END' std_outp.1iA`
306 if test $out != 0
307 then echo "==> RUN 1iA : ABNORMAL END => exit" ; exit 2 ; fi
308 if test -f $pref.ckptA.001.001.data
309 then echo "==> END RUN 1iA"
310 else echo "==> RUN 1iA STOP without writing $pref => exit" ; exit 2 ; fi
311 for xx in $listP
312 do
313 rnp_loc $xx.ckptA $xx.$num1c
314 done
315 mv *.0??.0??.* $dir2
316 txtF=`ls -1 *.txt 2> /dev/null`
317 mv R?.data R?.meta DR?.data DR?.meta $txtF $dir2
318 listS=`ls $dir2/pickup*.${num0c}* 2> /dev/null | head -1`
319 if test "x$listS" != x ; then mv $dir2/pickup*.${num0c}* . ; fi
320 #--- 3rd run ( Nit iter , restart from 2nd )
321 ln -s $dir2/pickup*.$num1c.* .
322 sed "s/^ nIter0=$num0/ nIter0=$num1/g" data > data.tmp
323 mv -f data.tmp data
324 echo '==> START RUN 1iB'
325 if [ $mpi -ge 1 ]
326 then $cmdEXE std_outp.1iB > TTT.out.1iB 2>&1
327 else $cmdEXE > std_outp.1iB
328 fi
329 mv STDERR.0000 std__err.1iB
330 out=`egrep -c 'STOP ABNORMAL END' std_outp.1iB`
331 if test $out != 0
332 then echo "==> RUN 1iB : ABNORMAL END => exit" ; exit 3 ; fi
333 if test -f $pref.ckptA.001.001.data
334 then echo "==> END RUN 1iB"
335 else echo "==> RUN 1iB STOP without writing $pref => exit" ; exit 3 ; fi
336 for xx in $listP
337 do
338 rnp_loc $xx.ckptA $xx.$num2c
339 done
340 mv *.0??.0??.* $dir3
341 txtF=`ls -1 *.txt 2> /dev/null`
342 mv R?.data R?.meta DR?.data DR?.meta $txtF $dir3
343 listS=`ls $dir3/pickup*.${num0c}* 2> /dev/null | head -1`
344 if test "x$listS" != x ; then mv $dir3/pickup*.${num0c}* . ; fi
345 rm $dir3/pickup*.$num1c.*
346 rm data
347 #----------------------------------------------------------------------
348 fi
349
350 if test $flag = '2' -o $flag = 'All' ; then
351 #----------------------------------------------------------------------
352 echo ' ' ; echo '== compare cg2d_init_res :'
353 echo ' run 1iA:'
354 grep "cg2d_init_res" std_outp.1iA \
355 | sed 's/.* cg2d_init_res =//'
356 echo ' run 1iB:'
357 grep "cg2d_init_res" std_outp.1iB \
358 | sed 's/.* cg2d_init_res =//'
359 echo ' run 2it:'
360 grep "cg2d_init_res" std_outp.2it \
361 | sed 's/.* cg2d_init_res =//'
362 #----------------------------------------------------------------------
363 fi
364
365 if test $flag = '3' -o $flag = 'All' ; then
366 #----------------------------------------------------------------------
367 echo ' '
368 echo "== diff pickup files : end of 1rst run (2x$Nit it) & end of 3rd run (2nd $Nit it)"
369 listP=`( cd $dir1 ; ls pickup*.$num2c* | sed 's/\..*//g' | uniq )`
370 chkmeta='Y'
371 for yy in $listP
372 do
373 listY=`(cd $dir1 ; ls $yy.$num2c.*.data | sed "s/$yy\.$num2c\.//" | sed "s/\.data//")`
374 zz=$yy.$num2c
375 echo '--> file='$zz', listY='$listY
376 for xx in $listY
377 do
378 echo ' diff' $dir1/$zz.$xx.data $dir3
379 diff $dir1/$zz.$xx.data $dir3
380 out=$?
381 if test $out != 0 ; then
382 echo 'Diff outp=' $out ' ==> stop'
383 exit 4
384 fi
385 if test $chkmeta = 'Y' -a -f $dir1/$zz.$xx.meta ; then
386 echo ' diff' $dir1/$zz.$xx.meta $dir3
387 diff $dir1/$zz.$xx.meta $dir3
388 out=$?
389 if test $out != 0 ; then
390 echo 'Diff outp=' $out ' ==> stop'
391 exit 5
392 fi
393 fi
394 done
395 done
396 #----------------------------------------------------------------------
397 fi
398
399 if test $flag = '4' -o $flag = 'All' ; then
400 #-------------
401 echo ' '
402 echo "== clean-up and reset :"
403 echo '--> remove output dir and output files:'
404 echo ' rm -rf' $dir1 $dir2 $dir3
405 rm -rf $dir1 $dir2 $dir3
406 echo ' rm -f' std_????.?i?
407 rm -f std_????.?i?
408 echo ' rm -f' data.pkg data.tst
409 rm -f data.pkg data.tst
410 #- move back files from temp_tst dir:
411 if test -d $tmpDir ; then
412 echo "--> move back files from 'temp_tst' dir."
413 cd $tmpDir ; mv -f * .. ; cd ..
414 rmdir $tmpDir
415 fi
416 #-------------
417 fi
418 exit 0

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