/[MITgcm]/MITgcm/tools/tst_2+2
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Contents of /MITgcm/tools/tst_2+2

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Revision 1.1 - (show annotations) (download)
Tue Dec 25 22:07:54 2007 UTC (12 years, 3 months ago) by jmc
Branch: MAIN
CVS Tags: checkpoint60, checkpoint61, checkpoint59q, checkpoint59p, checkpoint59r, checkpoint59m, checkpoint59o, checkpoint59n, checkpoint61f, checkpoint61g, checkpoint61d, checkpoint61e, checkpoint61b, checkpoint61c, checkpoint61a, checkpoint61h, checkpoint61i
moved from Contrib/jmc_script

1 #! /usr/bin/env bash
2
3 # $Header: /u/gcmpack/MITgcm_contrib/jmc_script/tst_2+2,v 1.2 2007/11/28 22:54:46 jmc Exp $
4 # $Name: $
5
6 rnp_loc()
7 {
8 # rnp_loc arg_1 arg_2
9 # rename files with prefix = 'arg_1' to files with prefix = 'arg_2'
10 echo ' rnp_loc:' $1 $2
11 # rnp -s $1 $2
12 listY=`ls -1 $1*`
13 for yy in $listY
14 do
15 zz=`echo $yy | sed "s/^$1/$2/"`
16 mv $yy $zz
17 done
18 }
19
20 #---------------------------
21
22 #- default:
23 Nit=2
24 prt=1 # 1 = print some informations ; 2 = print more informations
25 action=1
26 cmd='mv -f'
27 tmpDir='temp_tst'
28
29 #- executable:
30 mpi=0
31 if [ $mpi -ge 1 ]
32 then gcmExc=run_ifc_mpi
33 else gcmExc=mitgcmuv
34 fi
35
36 #- exit status:
37 # 0 -> test is successful
38 # 1 -> fail in 1rst run
39 # 2 -> fail in 2nd run
40 # 3 -> fail in 3rd run
41 # 4 -> pickup*.data (written at the end of 2+2 & 4 it run) are different
42 # 5 -> pickup*.meta (written at the end of 2+2 & 4 it run) are different
43 # 6 -> missing 'data.tst' file (removed or not yet generated ?)
44 # 7 -> missing standard output from previous run
45 # 8 -> missing information (in standard output of previous run) about pickup
46 # 9 -> error in argument list
47
48 nArg=$#
49 if [ $nArg -ge 3 ]
50 then
51 if test $2 = '-exe' ; then gcmExc=$3 ; nArg=`expr $nArg - 2` ; fi
52 if test $1 = '-exe' ; then gcmExc=$2 ; shift ; shift ; nArg=$# ; fi
53 fi
54
55 case $nArg in
56 1) ;;
57 *) echo "Usage: `basename $0` flag [-exe EXECUTABLE]"
58 echo " Check restart: compare 1 run of 2 x $Nit it long"
59 echo " with 2 consecutive runs of $Nit it long each"
60 echo " where: flag = 0 -> prepare (from a previous run) pickup & data files"
61 echo " flag = 1 -> do the 3 runs (with EXECUTABLE, default=mitgcmuv)"
62 echo " flag = 2 -> compare std_outp"
63 echo " flag = 3 -> compare pickup files"
64 echo " flag = 4 -> clean-up output files"
65 echo " flag = All -> do 0,1,2,3,4 sequentially"
66 exit 9 ;;
67 esac
68 flag=$1
69
70 #=========================
71
72 if test $flag = '0' -o $flag = 'All' ; then
73 #----------------------------------------------------------------------
74 # last pickup written (from previous run):
75 if [ $mpi -ge 1 ]
76 then outpRun='STDOUT.0000'
77 else outpRun='output.txt'
78 fi
79 if test -r $outpRun
80 then
81 # grep ' %CHECKPOINT ' $outpRun | tail -1
82 lastPick=`grep ' %CHECKPOINT ' $outpRun | sed 's/^.*%CHECKPOINT //' | tail -1`
83 if test "x$lastPick" = x
84 then
85 echo "no pickup information written in '$outpRun' from previous run"
86 exit 8
87 else
88 iter=`echo $lastPick | awk '{print $1}'`
89 zz=`echo $lastPick | awk '{print $2}'`
90 echo "from previous run std.outp, lastPick='$lastPick' ; iter='$iter' ; zz='$zz'"
91 fi
92 else
93 echo "no standard output file '$outpRun' from previous run"
94 exit 7
95 fi
96
97 #- rename pickup (if needed)
98 sufx=`printf "%10.10i\n" $iter`
99 if test $zz = $sufx
100 then
101 echo "no need to change pickup sufix"
102 else
103 # echo "rename pickup sufix: $zz -> $sufx"
104 listP=`ls pickup*.${zz}* 2> /dev/null | sed 's/\..*//g' | uniq`
105 if test "x$listP" = x
106 then echo ' rename' $zz '->' $sufx ': no file to rename'
107 else
108 if [ $prt -ge 1 ] ; then echo ' rename' $zz '->' $sufx 'for all:' $listP ; fi
109 for yy in $listP
110 do
111 listF=`ls -1 $yy.${zz}*`
112 for xx in $listF
113 do
114 new=`echo $xx | sed "s/^$yy\.$zz/$yy\.$sufx/"`
115 if [ $prt -ge 2 ] ; then echo ' '$cmd $xx $new ; fi
116 if test $action = 1 ; then $cmd $xx $new ; fi
117 done
118 done
119 fi
120 fi
121 #-------------------------
122 echo "prepare parameter file 'data.tst' :"
123 cp -p -f data data.tst
124 listOut='startTime endTime nIter0 nTimeSteps nEndIter chkPtFreq pChkPtFreq globalFiles'
125 listOut=$listOut' useSingleCpuIO pickupSuff usePickupBeforeC54 mdsioLocalDir'
126 #- comment out (in data.tst) all parameters from list: 'listOut'
127 for yy in $listOut
128 do
129 if [ $prt -ge 2 ] ; then echo -n ' commenting out:' $yy ; fi
130 nn=`grep -i -c "^ *$yy *=" data.tst`
131 if [ $nn -ge 1 ]
132 then
133 listN=`grep -i -n "^ *$yy *=" data.tst | sed 's/:.*$//'`
134 if [ $prt -ge 2 ] ; then echo " : found on line: $listN" ; fi
135 for ll in $listN
136 do
137 sed "$ll s/^./#&/" data.tst > data.tmp_$$
138 # diff data.tmp_$$ data.tst
139 mv -f data.tmp_$$ data.tst
140 done
141 else if [ $prt -ge 2 ] ; then echo ' : not found' ; fi
142 fi
143 done
144 if [ $prt -ge 2 ] ; then echo ' ' ; fi
145 # add nIter0 & nTimeSteps in namelist "PARM03":
146 Dbl=`expr $Nit \* 2`
147 sed "/^ *\&PARM03/a \ nTimeSteps=$Dbl," data.tst > data.tmp_$$
148 mv -f data.tmp_$$ data.tst
149 sed "/^ *\&PARM03/a \ nIter0=$iter," data.tst > data.tmp_$$
150 mv -f data.tmp_$$ data.tst
151 echo "prepare file 'data.tst' : done"
152 if [ $prt -ge 1 ] ; then
153 echo ' diff data.tst data' ; diff data.tst data ; echo ' ' ;
154 fi
155 #---- clean up current dir: move output to temp_tst dir:
156 if test $action = 1 ; then
157 rm -rf $tmpDir
158 mkdir $tmpDir
159 mv -f *.data $tmpDir
160 mv -f *.meta $tmpDir
161 mv -f *.txt $tmpDir
162 listS=`ls $tmpDir/pickup*.${sufx}* 2> /dev/null | head -1`
163 if test "x$listS" != x ; then mv $tmpDir/pickup*.${sufx}* . ; fi
164 #- move main parameter file "data":
165 mv -f data $tmpDir
166 #- do not deal with MNC pickup at all:
167 cp -p -f data.pkg data.tmp_$$
168 mv -f data.pkg $tmpDir
169 mv -f data.tmp_$$ data.pkg
170 yy='useMNC'
171 if [ $prt -ge 2 ] ; then echo -n " commenting out: $yy in data.pkg" ; fi
172 nn=`grep -i -c "^ *$yy *=" data.pkg`
173 if [ $nn -ge 1 ]
174 then
175 listN=`grep -i -n "^ *$yy *=" data.pkg | sed 's/:.*$//'`
176 if [ $prt -ge 2 ] ; then echo " : found on line: $listN" ; fi
177 for ll in $listN
178 do
179 sed "$ll s/^./#&/" data.pkg > data.tmp_$$
180 if [ $prt -ge 1 ] ; then echo ' changes in data.pkg'
181 diff data.tmp_$$ data.pkg ; echo ' ' ; fi
182 mv -f data.tmp_$$ data.pkg
183 done
184 else if [ $prt -ge 2 ] ; then echo ' : not found' ; echo ' ' ; fi
185 fi
186 fi
187 #----------------------------------------------------------------------
188 fi
189
190 #=========================
191
192 if test -r data.tst ; then
193 #- extract length of runs & starting iter number from file "data.tst"
194 num0=`sed -n 's/^ nIter0=//p' data.tst | sed 's/,//g' | sed 's/ //g'`
195 Dbl=`sed -n 's/^ nTimeSteps=//p' data.tst | sed 's/,//g'`
196 Nit=`expr $Dbl / 2`
197 # Nit = Nb of iter of 2nd & 3rd run (1rst one is 2 x Nit iter long)
198 else
199 echo '=> Need a readable "data.tst" file for the 2 x Nit iterations run'
200 exit 6
201 fi
202
203 #- dir where to put the results :
204 dir1=res_2it
205 dir2=res_1iA
206 dir3=res_1iB
207
208 #---------------------------
209 num1=`expr $num0 + $Nit`
210 num2=`expr $num0 + $Dbl`
211 num0c=`printf "%10.10i\n" $num0`
212 num1c=`printf "%10.10i\n" $num1`
213 num2c=`printf "%10.10i\n" $num2`
214 echo " start-end iter: $num0 , $num1 , $num2"
215 echo " sufix: '$num0c' '$num1c' '$num2c'"
216 echo ' gcmExc='$gcmExc
217 #exit
218 #---------------------------
219
220 if test $flag = '1' -o $flag = 'All' ; then
221 #----------------------------------------------------------------------
222 #- check at the end of each run for pickup with prefix:
223 pref='pickup'
224 offLine=`grep -i -c '^ *useOffLine *= *\.TRUE\.' data.pkg`
225 if [ $offLine -ge 1 ] ; then pref='pickup_ptracers' ; fi
226 #---------------------------
227 if test -d $dir1 -o -d $dir2 -o -d $dir3
228 then echo -n 'remove dir: '
229 if test -d $dir1 ; then echo -n $dir1 ' , ' ; rm -r $dir1 ; fi
230 if test -d $dir2 ; then echo -n $dir2 ' , ' ; rm -r $dir2 ; fi
231 if test -d $dir3 ; then echo -n $dir3 ' , ' ; rm -r $dir3 ; fi
232 echo ' '
233 fi
234 mkdir $dir1 $dir2 $dir3
235 rm -f STDERR.0000
236
237 #--- 1rst run ( 2 x Nit iter )
238 cp -p data.tst data
239 echo '==> START RUN 2 x' $Nit 'it'
240 if [ $mpi -ge 1 ]
241 then ./$gcmExc std_outp.2it > TTT.out.2it 2>&1
242 else ./$gcmExc > std_outp.2it
243 fi
244 mv STDERR.0000 std__err.2it
245 out=`egrep -c 'STOP ABNORMAL END' std_outp.2it`
246 if test $out != 0
247 then echo "==> RUN 2 x $Nit it : ABNORMAL END => exit" ; exit 1 ; fi
248 if test -f $pref.ckptA.001.001.data
249 then echo "==> END RUN 2 x $Nit it"
250 else echo "==> RUN 2 x $Nit it STOP without writing $pref => exit" ; exit 1 ; fi
251 listP=`ls pickup*.ckptA* | sed 's/\..*//g' | uniq`
252 echo ' listP=' $listP
253 for xx in $listP
254 do
255 rnp_loc $xx.ckptA $xx.$num2c
256 done
257 mv *.0??.0??.* $dir1
258 txtF=`ls -1 *.txt 2> /dev/null`
259 mv R?.data R?.meta DR?.data DR?.meta $txtF $dir1
260 listS=`ls $dir1/pickup*.${num0c}* 2> /dev/null | head -1`
261 if test "x$listS" != x ; then mv $dir1/pickup*.${num0c}* . ; fi
262 #--- 2nd run ( Nit iter , restart from same Iter = num0 as 1rst run )
263 sed "s/^ nTimeSteps=$Dbl/ nTimeSteps=$Nit/g" data.tst > data
264 echo '==> START RUN 1iA'
265 if [ $mpi -ge 1 ]
266 then ./$gcmExc std_outp.1iA > TTT.out.1iA 2>&1
267 else ./$gcmExc > std_outp.1iA
268 fi
269 mv STDERR.0000 std__err.1iA
270 out=`egrep -c 'STOP ABNORMAL END' std_outp.1iA`
271 if test $out != 0
272 then echo "==> RUN 1iA : ABNORMAL END => exit" ; exit 2 ; fi
273 if test -f $pref.ckptA.001.001.data
274 then echo "==> END RUN 1iA"
275 else echo "==> RUN 1iA STOP without writing $pref => exit" ; exit 2 ; fi
276 for xx in $listP
277 do
278 rnp_loc $xx.ckptA $xx.$num1c
279 done
280 mv *.0??.0??.* $dir2
281 txtF=`ls -1 *.txt 2> /dev/null`
282 mv R?.data R?.meta DR?.data DR?.meta $txtF $dir2
283 listS=`ls $dir2/pickup*.${num0c}* 2> /dev/null | head -1`
284 if test "x$listS" != x ; then mv $dir2/pickup*.${num0c}* . ; fi
285 #--- 3rd run ( Nit iter , restart from 2nd )
286 ln -s $dir2/pickup*.$num1c.* .
287 sed "s/^ nIter0=$num0/ nIter0=$num1/g" data > data.tmp
288 mv -f data.tmp data
289 echo '==> START RUN 1iB'
290 if [ $mpi -ge 1 ]
291 then ./$gcmExc std_outp.1iB > TTT.out.1iB 2>&1
292 else ./$gcmExc > std_outp.1iB
293 fi
294 mv STDERR.0000 std__err.1iB
295 out=`egrep -c 'STOP ABNORMAL END' std_outp.1iB`
296 if test $out != 0
297 then echo "==> RUN 1iB : ABNORMAL END => exit" ; exit 3 ; fi
298 if test -f $pref.ckptA.001.001.data
299 then echo "==> END RUN 1iB"
300 else echo "==> RUN 1iB STOP without writing $pref => exit" ; exit 3 ; fi
301 for xx in $listP
302 do
303 rnp_loc $xx.ckptA $xx.$num2c
304 done
305 mv *.0??.0??.* $dir3
306 txtF=`ls -1 *.txt 2> /dev/null`
307 mv R?.data R?.meta DR?.data DR?.meta $txtF $dir3
308 listS=`ls $dir3/pickup*.${num0c}* 2> /dev/null | head -1`
309 if test "x$listS" != x ; then mv $dir3/pickup*.${num0c}* . ; fi
310 rm $dir3/pickup*.$num1c.*
311 rm data
312 #----------------------------------------------------------------------
313 fi
314
315 if test $flag = '2' -o $flag = 'All' ; then
316 #----------------------------------------------------------------------
317 echo ' ' ; echo '== compare cg2d_init_res :'
318 echo ' run 1iA:'
319 grep "cg2d_init_res" std_outp.1iA \
320 | sed 's/.* cg2d_init_res =//'
321 echo ' run 1iB:'
322 grep "cg2d_init_res" std_outp.1iB \
323 | sed 's/.* cg2d_init_res =//'
324 echo ' run 2it:'
325 grep "cg2d_init_res" std_outp.2it \
326 | sed 's/.* cg2d_init_res =//'
327 #----------------------------------------------------------------------
328 fi
329
330 if test $flag = '3' -o $flag = 'All' ; then
331 #----------------------------------------------------------------------
332 echo ' '
333 echo "== diff pickup files : end of 1rst run (2x$Nit it) & end of 3rd run (2nd $Nit it)"
334 listP=`( cd $dir1 ; ls pickup*.$num2c* | sed 's/\..*//g' | uniq )`
335 chkmeta='Y'
336 for yy in $listP
337 do
338 listY=`(cd $dir1 ; ls $yy.$num2c.*.data | sed "s/$yy\.$num2c\.//" | sed "s/\.data//")`
339 zz=$yy.$num2c
340 echo '--> file='$zz', listY='$listY
341 for xx in $listY
342 do
343 echo ' diff' $dir1/$zz.$xx.data $dir3
344 diff $dir1/$zz.$xx.data $dir3
345 out=$?
346 if test $out != 0 ; then
347 echo 'Diff outp=' $out ' ==> stop'
348 exit 4
349 fi
350 if test $chkmeta = 'Y' -a -f $dir1/$zz.$xx.meta ; then
351 echo ' diff' $dir1/$zz.$xx.meta $dir3
352 diff $dir1/$zz.$xx.meta $dir3
353 out=$?
354 if test $out != 0 ; then
355 echo 'Diff outp=' $out ' ==> stop'
356 exit 5
357 fi
358 fi
359 done
360 done
361 #----------------------------------------------------------------------
362 fi
363
364 if test $flag = '4' -o $flag = 'All' ; then
365 #-------------
366 echo ' '
367 echo "== clean-up and reset :"
368 echo '--> remove output dir and output files:'
369 echo ' rm -rf' $dir1 $dir2 $dir3
370 rm -rf $dir1 $dir2 $dir3
371 echo ' rm -f' std_????.?i?
372 rm -f std_????.?i?
373 echo ' rm -f' data.pkg data.tst
374 rm -f data.pkg data.tst
375 #- move back files from temp_tst dir:
376 if test -d $tmpDir ; then
377 echo "--> move back files from 'temp_tst' dir."
378 cd $tmpDir ; mv -f * .. ; cd ..
379 rmdir $tmpDir
380 fi
381 #-------------
382 fi
383 exit 0

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