/[MITgcm]/MITgcm/tools/tst_2+2

Diff of /MITgcm/tools/tst_2+2

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-revision 1.6 by jmc,
Mon Mar 23 23:28:13 2009 UTC
+revision 1.12 by jmc,
Tue May  8 15:09:26 2012 UTC
 Line 7 
 rnp_loc()
  {
  #   rnp_loc arg_1 arg_2
  #   rename files with prefix = 'arg_1' to files with prefix = 'arg_2'
-     echo ' rnp_loc:' $1 $2
+     if [ $prt -ge 1 ] ; then echo '  rnp_loc:' $1 $2 ; fi
  #   rnp -s $1 $2
      listY=`ls -1 $1*`
      for yy in $listY
      do
        zz=`echo $yy | sed "s/^$1/$2/"`
-       mv $yy $zz
+       if [ $prt -ge 2 ] ; then echo '   '$cmdMV $yy $zz ; fi
+       if test $action = 1 ; then    $cmdMV $yy $zz ; fi
      done
  }
+ #-----------
+ move_outp()
+ {
+ #   move_outp arg_1
+ #   move mitgcm output files to directory 'arg_1'
+     if [ $prt -ge 1 ] ; then echo ' move_outp:' $1 ; fi
+     mv *.data *.meta $1
+     listF=`ls -1 *.txt STD???.00?? 2> /dev/null`
+     if test "x$listF" != x ; then mv $listF $1 ; fi
+     #- move back sym link:
+     listL=`find $1 -type l`
+     ttd=`echo $listL | wc -w`
+     #echo "ttd=$ttd"
+     if test $ttd != 0 ; then
+       #echo "listL='$listL'"
+       if [ $prt -ge 2 ] ; then echo "  mv back:" $listL | sed "s/$1\///g" ; fi
+       mv $listL .
+     fi
+ }
  #---------------------------
  #- exit status:
-Line 27 
 rnp_loc()
+Line 49 
 rnp_loc()
  # 4 -> pickup*.data (written at the end of 2+2 & 4 it run) are different
  # 5 -> pickup*.meta (written at the end of 2+2 & 4 it run) are different
  # 6 -> missing 'data.tst' file (removed or not yet generated ?)
- # 7 -> missing standard output from previous run
+ # 7 -> missing executable or standard output from previous run
  # 8 -> missing information (in standard output of previous run) about pickup
  # 9 -> error in argument list
-Line 77 
 case $nArg in
+Line 99 
 case $nArg in
        echo "        flag = 2 -> compare std_outp"
        echo "        flag = 3 -> compare pickup files"
        echo "        flag = 4 -> clean-up output files"
+       echo "       flag = NC -> do 0,1,2,3 sequentially (no cleaning)"
        echo "      flag = All -> do 0,1,2,3,4 sequentially"
        exit 9 ;;
  esac
+ if test $flag = 'NC' -o $flag = 'All' ; then Multi=1 ; else Multi=0 ; fi
  #-- set the run-command :
  if test "x$cmdEXE" = x
-Line 93 
 fi
+Line 117 
 fi
  echo "cmdEXE='$cmdEXE'"
  #=========================
- if test $flag = '0' -o $flag = 'All' ; then
+ if test $flag = '0' -o $Multi = '1' ; then
  #----------------------------------------------------------------------
+ # check for executable:
+ if test ! -x $gcmEXE ; then
+   echo "file '$gcmEXE' does not exist or is not executable"
+   exit 7
+ fi
  # last pickup written (from previous run):
  if [ $mpi -ge 1 ]
  then outpRun='STDOUT.0000'
-Line 110 
 then
+Line 139 
 then
      exit 8
    else
      iter=`echo $lastPick | awk '{print $1}'`
-     zz=`echo $lastPick | awk '{print $2}'`
+     sufx=`echo $lastPick | awk '{print $2}'`
-     echo "from previous run std.outp, lastPick='$lastPick' ; iter='$iter' ; zz='$zz'"
+     echo "from previous run std.outp, lastPick='$lastPick' ; iter='$iter' ; sufx='$sufx'"
    fi
  else
    echo "no standard output file '$outpRun' from previous run"
    exit 7
  fi
- #- rename pickup (if needed)
- sufx=`printf "%10.10i\n" $iter`
- if test $zz = $sufx
- then
-  echo "no need to change pickup sufix"
- else
- # echo "rename pickup sufix: $zz -> $sufx"
-  listP=`ls pickup*.${zz}* 2> /dev/null | sed 's/\..*//g' | uniq`
-  if test "x$listP" = x
-  then echo ' rename' $zz  '->' $sufx ': no file to rename'
-  else
-   if [ $prt -ge 1 ] ; then echo ' rename' $zz  '->' $sufx 'for all:' $listP ; fi
-   for yy in $listP
-   do
-     listF=`ls -1 $yy.${zz}*`
-     for xx in $listF
-     do
-       new=`echo $xx | sed "s/^$yy\.$zz/$yy.$sufx/"`
-       if [ $prt -ge 2 ] ; then echo '  '$cmdMV $xx $new ; fi
-       if test $action = 1 ; then    $cmdMV $xx $new ; fi
-     done
-   done
-  fi
- fi
  #-------------------------
  echo "prepare parameter file 'data.tst' :"
  cp -p -f data data.tst
- listOut='startTime endTime nIter0 nTimeSteps nEndIter chkPtFreq pChkPtFreq globalFiles'
+ listOut='startTime endTime nIter0 nTimeSteps nEndIter chkPtFreq pChkPtFreq'
- listOut=$listOut' pickupSuff usePickupBeforeC54 mdsioLocalDir'
+ listOut=$listOut' pickupSuff usePickupBeforeC54 mdsioLocalDir pickupStrictlyMatch'
  #- comment out (in data.tst) all parameters from list: 'listOut'
  for yy in $listOut
  do
-Line 184 
 if test $action = 1 ; then
+Line 189 
 if test $action = 1 ; then
   mv -f *.meta $tmpDir
   mv -f *.txt $tmpDir 2> /dev/null
   mv -f STD???.0[0-9][0-9][0-9] $tmpDir
-  listS=`ls $tmpDir/pickup*.${sufx}* 2> /dev/null | head -1`
-  if test "x$listS" != x ; then mv $tmpDir/pickup*.${sufx}* . ; fi
  #- move main parameter file "data":
   mv -f data $tmpDir
  #- do not deal with MNC pickup at all:
-Line 209 
 if test $action = 1 ; then
+Line 212 
 if test $action = 1 ; then
    else if [ $prt -ge 2 ] ; then echo ' : not found' ; echo ' ' ; fi
    fi
  fi
+ #-------------------------
+ #-- link back pickup files
+  listS=`ls $tmpDir/pickup*.${sufx}* 2> /dev/null | head -1`
+  if test "x$listS" != x ; then
+    if [ $prt -ge 1 ] ; then echo ' link back:' $tmpDir'/pickup*.'${sufx}'*' ; fi
+    if test $action = 1 ; then ln -s $tmpDir/pickup*.${sufx}* . ; fi
+  fi
+ #- rename pickup (if needed)
+ nIt0c=`printf "%10.10i\n" $iter`
+ if test $sufx = $nIt0c
+ then
+  echo "no need to change pickup sufix"
+ else
+  listP=`ls pickup*.${sufx}* 2> /dev/null | sed 's/\..*//g' | uniq`
+  if test "x$listP" = x
+  then echo ' rename' $sufx  '->' $nIt0c ': no file to rename'
+  else
+   if [ $prt -ge 1 ] ; then echo ' rename' $sufx  '->' $nIt0c 'for all:' $listP ; fi
+   for yy in $listP
+   do
+     rnp_loc $yy.${sufx} $yy.$nIt0c
+   done
+  fi
+ fi
  #----------------------------------------------------------------------
  fi
-Line 242 
 echo ' cmdEXE='$cmdEXE
+Line 269 
 echo ' cmdEXE='$cmdEXE
  #exit
  #---------------------------
- if test $flag = '1' -o $flag = 'All' ; then
+ if test $flag = '1' -o $Multi = '1' ; then
  #----------------------------------------------------------------------
  #- check at the end of each run for pickup with prefix:
  pref='pickup'
-Line 263 
 rm -f STDERR.0000
+Line 290 
 rm -f STDERR.0000
  cp -p data.tst data
  echo '==> START RUN 2 x' $Nit 'it'
  if [ $mpi -ge 1 ]
  then
       sleep $wait2run
       $cmdEXE > TTT.out.2it 2>&1
       mv STDOUT.0000 std_outp.2it
       cat TTT.out.2it
  else $cmdEXE > std_outp.2it
  fi
+ if test ! -s std_outp.2it
+ then echo "empty or no output file: 'std_outp.2it' => exit" ; exit 1 ; fi
  mv STDERR.0000 std__err.2it
  out=`egrep -c 'STOP ABNORMAL END' std_outp.2it`
  if test $out != 0
-Line 284 
 for xx in $listP
+Line 313 
 for xx in $listP
  do
    rnp_loc $xx.ckptA $xx.$num2c
  done
- mv *.data *.meta $dir1
+ move_outp $dir1
- txtF=`ls -1 *.txt STD???.00?? 2> /dev/null`
- if test "x$txtF" != x ; then mv $txtF $dir1 ; fi
- listS=`ls $dir1/pickup*.${num0c}* 2> /dev/null | head -1`
- if test "x$listS" != x ; then mv $dir1/pickup*.${num0c}* . ; fi
  #---  2nd run ( Nit iter , restart from same Iter = num0 as 1rst run )
  sed "s/^ nTimeSteps=$Dbl/ nTimeSteps=$Nit/g" data.tst > data.tmp
  mv -f data.tmp data
  echo '==> START RUN 1iA'
  if [ $mpi -ge 1 ]
  then
       sleep $wait2run
       $cmdEXE > TTT.out.1iA 2>&1
       mv STDOUT.0000 std_outp.1iA
       cat TTT.out.1iA
  else $cmdEXE > std_outp.1iA
  fi
+ if test ! -s std_outp.1iA
+ then echo "empty or no output file: 'std_outp.1iA' => exit" ; exit 2 ; fi
  mv STDERR.0000 std__err.1iA
  out=`egrep -c 'STOP ABNORMAL END' std_outp.1iA`
  if test $out != 0
-Line 313 
 for xx in $listP
+Line 340 
 for xx in $listP
  do
   rnp_loc $xx.ckptA $xx.$num1c
  done
- mv *.data *.meta $dir2
+ move_outp $dir2
- txtF=`ls -1 *.txt STD???.00?? 2> /dev/null`
- if test "x$txtF" != x ; then mv $txtF $dir2 ; fi
- listS=`ls $dir2/pickup*.${num0c}* 2> /dev/null | head -1`
- if test "x$listS" != x ; then mv $dir2/pickup*.${num0c}* . ; fi
  #---  3rd run ( Nit iter , restart from 2nd )
  ln -s $dir2/pickup*.$num1c.* .
  sed "s/^ nIter0=$num0/ nIter0=$num1/g" data > data.tmp
  mv -f data.tmp data
  echo '==> START RUN 1iB'
  if [ $mpi -ge 1 ]
  then
       sleep $wait2run
       $cmdEXE > TTT.out.1iB 2>&1
       mv STDOUT.0000 std_outp.1iB
       cat TTT.out.1iB
  else $cmdEXE > std_outp.1iB
  fi
+ if test ! -s std_outp.1iB
+ then echo "empty or no output file: 'std_outp.1iB' => exit" ; exit 3 ; fi
  mv STDERR.0000 std__err.1iB
  out=`egrep -c 'STOP ABNORMAL END' std_outp.1iB`
  if test $out != 0
-Line 343 
 for xx in $listP
+Line 368 
 for xx in $listP
  do
   rnp_loc $xx.ckptA $xx.$num2c
  done
- mv *.data *.meta $dir3
+ # remove pickup*.$mun1c* sym-link:
- txtF=`ls -1 *.txt STD???.00?? 2> /dev/null`
+ find . ! -name . -prune -type l -name 'pickup*.'${num1c}'*' -exec rm {} \;
- if test "x$txtF" != x ; then mv $txtF $dir3 ; fi
+ move_outp $dir3
- listS=`ls $dir3/pickup*.${num0c}* 2> /dev/null | head -1`
- if test "x$listS" != x ; then mv $dir3/pickup*.${num0c}* . ; fi
- rm $dir3/pickup*.$num1c.*
  rm data
  #----------------------------------------------------------------------
  fi
- if test $flag = '2' -o $flag = 'All' ; then
+ if test $flag = '2' -o $Multi = '1' ; then
  #----------------------------------------------------------------------
- echo ' ' ; echo '== compare cg2d_init_res :'
+ listCGini="2"
- echo ' run 1iA:'
+ #-- check if using 3-D solver
-  grep "cg2d_init_res" std_outp.1iA \
+   nn=`grep -i -c "^ *nonHydrostatic *= *\.TRUE\." data.tst`
-       | sed 's/.* cg2d_init_res =//'
+  if [ $nn -eq 0 ] ; then
- echo ' run 1iB:'
+   nn=`grep -i -c "^ *implicitIntGravWave *= *\.TRUE\." data.tst`
-  grep "cg2d_init_res" std_outp.1iB \
+  fi
-       | sed 's/.* cg2d_init_res =//'
+ if [ $nn -ge 1 ] ; then listCGini="$listCGini 3"; fi
- echo ' run 2it:'
+ for nn in $listCGini
-  grep "cg2d_init_res" std_outp.2it \
+ do
-       | sed 's/.* cg2d_init_res =//'
+   echo ' ' ; echo "== compare cg${nn}d_init_res :"
+   echo ' run 1iA:'
+    grep "cg${nn}d_init_res" std_outp.1iA \
+         | sed "s/.* cg${nn}d_init_res =//"
+   echo ' run 1iB:'
+    grep "cg${nn}d_init_res" std_outp.1iB \
+         | sed "s/.* cg${nn}d_init_res =//"
+   echo ' run 2it:'
+    grep "cg${nn}d_init_res" std_outp.2it \
+         | sed "s/.* cg${nn}d_init_res =//"
+ done
  #----------------------------------------------------------------------
  fi
- if test $flag = '3' -o $flag = 'All' ; then
+ if test $flag = '3' -o $Multi = '1' ; then
  #----------------------------------------------------------------------
  echo ' '
  echo "== diff pickup files : end of 1rst run (2x$Nit it) & end of 3rd run (2nd $Nit it)"
-Line 406 
 if test $flag = '4' -o $flag = 'All' ; t
+Line 438 
 if test $flag = '4' -o $flag = 'All' ; t
  #-------------
  echo ' '
  echo "== clean-up and reset :"
+  echo '--> remove pickup*.'$num0c'* sym-links:'
+ #find . ! -name . -prune -type l -name 'pickup*.'${num0c}'*' -exec rm {} \;
+  listS=`find . ! -name . -prune -type l -name 'pickup*.'${num0c}'*'`
+  if [ $prt -ge 2 ] ; then echo ' rm' $listS ; fi
+  rm -f $listS
   echo '--> remove output dir and output files:'
   echo ' rm -rf' $dir1 $dir2 $dir3
   rm -rf $dir1 $dir2 $dir3

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