/[MITgcm]/MITgcm/tools/tst_2+2
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revision 1.2 by jmc, Fri Feb 27 22:58:57 2009 UTC revision 1.6 by jmc, Mon Mar 23 23:28:13 2009 UTC
# Line 3  Line 3 
3  # $Header$  # $Header$
4  # $Name$  # $Name$
5    
 run_mpi()  
 {  
 #   run_mpi output_file  
     echo "execute: '$RUNMPI'"  
     $RUNMPI  
     if test $# = 1  
     then  mv STDOUT.0000  $1  
     echo 'mv STDOUT.0000' $1  
     fi  
 }  
   
6  rnp_loc()  rnp_loc()
7  {  {
8  #   rnp_loc arg_1 arg_2  #   rnp_loc arg_1 arg_2
# Line 48  prt=1    # 1 = print some informations ; Line 37  prt=1    # 1 = print some informations ;
37  action=1  action=1
38  cmdMV='mv -f'  cmdMV='mv -f'
39  tmpDir='temp_tst'  tmpDir='temp_tst'
40    wait2run=0  # if needs sometime for file system syncro on all nodes
41    
42  #- default executable, command-line , using MPI:  #- default executable, command-line , using MPI:
43  gcmEXE=./mitgcmuv  gcmEXE=./mitgcmuv
# Line 73  for xx ; do Line 63  for xx ; do
63            *) flag=$xx ;;            *) flag=$xx ;;
64    esac    esac
65  done  done
66  echo "cmdEXE='$cmdEXE' ; RUNMPI='$RUNMPI'"  #echo "cmdEXE='$cmdEXE'"
67  echo "nArg=$nArg ; mpi=$mpi ; flag='$flag'"  #echo "nArg=$nArg ; mpi=$mpi ; flag='$flag'"
68    
69  case $nArg in  case $nArg in
70    1) ;;    1) ;;
# Line 94  esac Line 84  esac
84  #-- set the run-command :  #-- set the run-command :
85  if test "x$cmdEXE" = x  if test "x$cmdEXE" = x
86  then  then
87      RUNMPI="mpirun -machinefile ../../mf -v -np 2 $gcmEXE"    if [ $mpi -ge 1 ] ; then
88        cmdEXE="mpirun -machinefile ../../mf -v -np 2 $gcmEXE"
89      else
90      cmdEXE=$gcmEXE      cmdEXE=$gcmEXE
91  else    fi
     RUNMPI="$cmdEXE"  
92  fi  fi
93  if [ $mpi -ge 1 ] ; then cmdEXE=run_mpi ; fi  echo "cmdEXE='$cmdEXE'"
 echo "cmdEXE='$cmdEXE' ; RUNMPI='$RUNMPI'"  
94  #=========================  #=========================
95    
96  if test $flag = '0' -o $flag = 'All' ; then  if test $flag = '0' -o $flag = 'All' ; then
# Line 145  else Line 135  else
135      listF=`ls -1 $yy.${zz}*`      listF=`ls -1 $yy.${zz}*`
136      for xx in $listF      for xx in $listF
137      do      do
138        new=`echo $xx | sed "s/^$yy\.$zz/$yy\.$sufx/"`        new=`echo $xx | sed "s/^$yy\.$zz/$yy.$sufx/"`
139        if [ $prt -ge 2 ] ; then echo '  '$cmdMV $xx $new ; fi        if [ $prt -ge 2 ] ; then echo '  '$cmdMV $xx $new ; fi
140        if test $action = 1 ; then    $cmdMV $xx $new ; fi        if test $action = 1 ; then    $cmdMV $xx $new ; fi
141      done      done
# Line 156  fi Line 146  fi
146  echo "prepare parameter file 'data.tst' :"  echo "prepare parameter file 'data.tst' :"
147  cp -p -f data data.tst  cp -p -f data data.tst
148  listOut='startTime endTime nIter0 nTimeSteps nEndIter chkPtFreq pChkPtFreq globalFiles'  listOut='startTime endTime nIter0 nTimeSteps nEndIter chkPtFreq pChkPtFreq globalFiles'
149  listOut=$listOut' useSingleCpuIO pickupSuff usePickupBeforeC54 mdsioLocalDir'  listOut=$listOut' pickupSuff usePickupBeforeC54 mdsioLocalDir'
150  #- comment out (in data.tst) all parameters from list: 'listOut'  #- comment out (in data.tst) all parameters from list: 'listOut'
151  for yy in $listOut  for yy in $listOut
152  do  do
# Line 192  if test $action = 1 ; then Line 182  if test $action = 1 ; then
182   mkdir $tmpDir   mkdir $tmpDir
183   mv -f *.data $tmpDir   mv -f *.data $tmpDir
184   mv -f *.meta $tmpDir   mv -f *.meta $tmpDir
185   mv -f *.txt $tmpDir   mv -f *.txt $tmpDir 2> /dev/null
186   mv -f STD???.0[0-9][0-9][0-9] $tmpDir   mv -f STD???.0[0-9][0-9][0-9] $tmpDir
187   listS=`ls $tmpDir/pickup*.${sufx}* 2> /dev/null | head -1`   listS=`ls $tmpDir/pickup*.${sufx}* 2> /dev/null | head -1`
188   if test "x$listS" != x ; then mv $tmpDir/pickup*.${sufx}* . ; fi   if test "x$listS" != x ; then mv $tmpDir/pickup*.${sufx}* . ; fi
# Line 273  rm -f STDERR.0000 Line 263  rm -f STDERR.0000
263  cp -p data.tst data  cp -p data.tst data
264  echo '==> START RUN 2 x' $Nit 'it'  echo '==> START RUN 2 x' $Nit 'it'
265  if [ $mpi -ge 1 ]  if [ $mpi -ge 1 ]
266  then $cmdEXE std_outp.2it > TTT.out.2it 2>&1  then
267         sleep $wait2run
268         $cmdEXE > TTT.out.2it 2>&1
269         mv STDOUT.0000 std_outp.2it
270         cat TTT.out.2it
271  else $cmdEXE > std_outp.2it  else $cmdEXE > std_outp.2it
272  fi  fi
273  mv STDERR.0000 std__err.2it  mv STDERR.0000 std__err.2it
274  out=`egrep -c 'STOP ABNORMAL END' std_outp.2it`  out=`egrep -c 'STOP ABNORMAL END' std_outp.2it`
275  if test $out != 0  if test $out != 0
276  then echo "==> RUN 2 x $Nit it : ABNORMAL END => exit" ; exit 1 ; fi  then echo "==> RUN 2 x $Nit it : ABNORMAL END => exit" ; exit 1 ; fi
277  if test -f $pref.ckptA.001.001.data  listF=`ls -1 $pref.ckptA*.data 2> /dev/null`
278  then echo "==>  END  RUN 2 x $Nit it"  if test "x$listF" = x
279  else echo "==> RUN 2 x $Nit it STOP without writing $pref => exit" ; exit 1 ; fi  then echo "==> RUN 2 x $Nit it STOP without writing $pref => exit" ; exit 1
280    else echo "==>  END  RUN 2 x $Nit it" ; fi
281  listP=`ls pickup*.ckptA* | sed 's/\..*//g' | uniq`  listP=`ls pickup*.ckptA* | sed 's/\..*//g' | uniq`
282  echo ' listP=' $listP  echo ' listP=' $listP
283  for xx in $listP  for xx in $listP
284  do  do
285    rnp_loc $xx.ckptA $xx.$num2c    rnp_loc $xx.ckptA $xx.$num2c
286  done  done
287  mv *.0??.0??.* $dir1  mv *.data *.meta $dir1
288  txtF=`ls -1 *.txt 2> /dev/null`  txtF=`ls -1 *.txt STD???.00?? 2> /dev/null`
289  mv R?.data R?.meta DR?.data DR?.meta $txtF $dir1  if test "x$txtF" != x ; then mv $txtF $dir1 ; fi
290  listS=`ls $dir1/pickup*.${num0c}* 2> /dev/null | head -1`  listS=`ls $dir1/pickup*.${num0c}* 2> /dev/null | head -1`
291  if test "x$listS" != x ; then mv $dir1/pickup*.${num0c}* . ; fi  if test "x$listS" != x ; then mv $dir1/pickup*.${num0c}* . ; fi
292  #---  2nd run ( Nit iter , restart from same Iter = num0 as 1rst run )  #---  2nd run ( Nit iter , restart from same Iter = num0 as 1rst run )
293  sed "s/^ nTimeSteps=$Dbl/ nTimeSteps=$Nit/g" data.tst > data  sed "s/^ nTimeSteps=$Dbl/ nTimeSteps=$Nit/g" data.tst > data.tmp
294    mv -f data.tmp data
295  echo '==> START RUN 1iA'  echo '==> START RUN 1iA'
296  if [ $mpi -ge 1 ]  if [ $mpi -ge 1 ]
297  then $cmdEXE std_outp.1iA > TTT.out.1iA 2>&1  then
298         sleep $wait2run
299         $cmdEXE > TTT.out.1iA 2>&1
300         mv STDOUT.0000 std_outp.1iA
301         cat TTT.out.1iA
302  else $cmdEXE > std_outp.1iA  else $cmdEXE > std_outp.1iA
303  fi  fi
304  mv STDERR.0000 std__err.1iA  mv STDERR.0000 std__err.1iA
305  out=`egrep -c 'STOP ABNORMAL END' std_outp.1iA`  out=`egrep -c 'STOP ABNORMAL END' std_outp.1iA`
306  if test $out != 0  if test $out != 0
307  then echo "==> RUN 1iA : ABNORMAL END => exit" ; exit 2 ; fi  then echo "==> RUN 1iA : ABNORMAL END => exit" ; exit 2 ; fi
308  if test -f $pref.ckptA.001.001.data  listF=`ls -1 $pref.ckptA*.data 2> /dev/null`
309  then echo "==>  END  RUN 1iA"  if test "x$listF" = x
310  else echo "==> RUN 1iA STOP without writing $pref => exit" ; exit 2 ; fi  then echo "==> RUN 1iA STOP without writing $pref => exit" ; exit 2
311    else echo "==>  END  RUN 1iA" ; fi
312  for xx in $listP  for xx in $listP
313  do  do
314   rnp_loc $xx.ckptA $xx.$num1c   rnp_loc $xx.ckptA $xx.$num1c
315  done  done
316  mv *.0??.0??.* $dir2  mv *.data *.meta $dir2
317  txtF=`ls -1 *.txt 2> /dev/null`  txtF=`ls -1 *.txt STD???.00?? 2> /dev/null`
318  mv R?.data R?.meta DR?.data DR?.meta $txtF $dir2  if test "x$txtF" != x ; then mv $txtF $dir2 ; fi
319  listS=`ls $dir2/pickup*.${num0c}* 2> /dev/null | head -1`  listS=`ls $dir2/pickup*.${num0c}* 2> /dev/null | head -1`
320  if test "x$listS" != x ; then mv $dir2/pickup*.${num0c}* . ; fi  if test "x$listS" != x ; then mv $dir2/pickup*.${num0c}* . ; fi
321  #---  3rd run ( Nit iter , restart from 2nd )  #---  3rd run ( Nit iter , restart from 2nd )
# Line 323  sed "s/^ nIter0=$num0/ nIter0=$num1/g" d Line 324  sed "s/^ nIter0=$num0/ nIter0=$num1/g" d
324  mv -f data.tmp data  mv -f data.tmp data
325  echo '==> START RUN 1iB'  echo '==> START RUN 1iB'
326  if [ $mpi -ge 1 ]  if [ $mpi -ge 1 ]
327  then $cmdEXE std_outp.1iB > TTT.out.1iB 2>&1  then
328         sleep $wait2run
329         $cmdEXE > TTT.out.1iB 2>&1
330         mv STDOUT.0000 std_outp.1iB
331         cat TTT.out.1iB
332  else $cmdEXE > std_outp.1iB  else $cmdEXE > std_outp.1iB
333  fi  fi
334  mv STDERR.0000 std__err.1iB  mv STDERR.0000 std__err.1iB
335  out=`egrep -c 'STOP ABNORMAL END' std_outp.1iB`  out=`egrep -c 'STOP ABNORMAL END' std_outp.1iB`
336  if test $out != 0  if test $out != 0
337  then echo "==> RUN 1iB : ABNORMAL END => exit" ; exit 3 ; fi  then echo "==> RUN 1iB : ABNORMAL END => exit" ; exit 3 ; fi
338  if test -f $pref.ckptA.001.001.data  listF=`ls -1 $pref.ckptA*.data 2> /dev/null`
339  then echo "==>  END  RUN 1iB"  if test "x$listF" = x
340  else echo "==> RUN 1iB STOP without writing $pref => exit" ; exit 3 ; fi  then echo "==> RUN 1iB STOP without writing $pref => exit" ; exit 3
341    else echo "==>  END  RUN 1iB" ; fi
342  for xx in $listP  for xx in $listP
343  do  do
344   rnp_loc $xx.ckptA $xx.$num2c   rnp_loc $xx.ckptA $xx.$num2c
345  done  done
346  mv *.0??.0??.* $dir3  mv *.data *.meta $dir3
347  txtF=`ls -1 *.txt 2> /dev/null`  txtF=`ls -1 *.txt STD???.00?? 2> /dev/null`
348  mv R?.data R?.meta DR?.data DR?.meta $txtF $dir3  if test "x$txtF" != x ; then mv $txtF $dir3 ; fi
349  listS=`ls $dir3/pickup*.${num0c}* 2> /dev/null | head -1`  listS=`ls $dir3/pickup*.${num0c}* 2> /dev/null | head -1`
350  if test "x$listS" != x ; then mv $dir3/pickup*.${num0c}* . ; fi  if test "x$listS" != x ; then mv $dir3/pickup*.${num0c}* . ; fi
351  rm $dir3/pickup*.$num1c.*  rm $dir3/pickup*.$num1c.*
# Line 370  listP=`( cd $dir1 ; ls pickup*.$num2c* | Line 376  listP=`( cd $dir1 ; ls pickup*.$num2c* |
376  chkmeta='Y'  chkmeta='Y'
377  for yy in $listP  for yy in $listP
378  do  do
379   listY=`(cd $dir1 ; ls $yy.$num2c.*.data | sed "s/$yy\.$num2c\.//" | sed "s/\.data//")`   listY=`(cd $dir1 ; ls $yy.$num2c*.data | sed "s/$yy\.$num2c//" | sed "s/data$//")`
380   zz=$yy.$num2c   zz=$yy.$num2c
381   echo '--> file='$zz', listY='$listY   echo '--> file='$zz', listY='$listY
382   for xx in $listY   for xx in $listY
383   do   do
384     echo ' diff' $dir1/$zz.$xx.data $dir3     echo ' diff' $dir1/$zz${xx}data $dir3
385     diff $dir1/$zz.$xx.data $dir3     diff $dir1/$zz${xx}data $dir3
386     out=$?     out=$?
387     if test $out != 0 ; then     if test $out != 0 ; then
388      echo 'Diff outp=' $out ' ==> stop'      echo 'Diff outp=' $out ' ==> stop'
389      exit 4      exit 4
390     fi     fi
391     if test $chkmeta = 'Y' -a -f $dir1/$zz.$xx.meta ; then     if test $chkmeta = 'Y' -a -f $dir1/$zz${xx}meta ; then
392      echo ' diff' $dir1/$zz.$xx.meta $dir3      echo ' diff' $dir1/$zz${xx}meta $dir3
393      diff $dir1/$zz.$xx.meta $dir3      diff $dir1/$zz${xx}meta $dir3
394      out=$?      out=$?
395      if test $out != 0 ; then      if test $out != 0 ; then
396       echo 'Diff outp=' $out ' ==> stop'       echo 'Diff outp=' $out ' ==> stop'
# Line 405  echo "== clean-up and reset :" Line 411  echo "== clean-up and reset :"
411   rm -rf $dir1 $dir2 $dir3   rm -rf $dir1 $dir2 $dir3
412   echo ' rm -f' std_????.?i?   echo ' rm -f' std_????.?i?
413   rm -f std_????.?i?   rm -f std_????.?i?
414     rm -f TTT.out.?i? 2> /dev/null
415   echo ' rm -f' data.pkg data.tst   echo ' rm -f' data.pkg data.tst
416   rm -f data.pkg data.tst   rm -f data.pkg data.tst
417  #- move back files from temp_tst dir:  #- move back files from temp_tst dir:
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