/[MITgcm]/MITgcm/tools/tst_2+2
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Revision 1.3 - (hide annotations) (download)
Sat Feb 28 18:55:48 2009 UTC (11 years, 1 month ago) by jmc
Branch: MAIN
Changes since 1.2: +32 -26 lines
simplify a little bit

1 jmc 1.1 #! /usr/bin/env bash
2    
3 jmc 1.3 # $Header: /u/gcmpack/MITgcm/tools/tst_2+2,v 1.2 2009/02/27 22:58:57 jmc Exp $
4 jmc 1.1 # $Name: $
5    
6     rnp_loc()
7     {
8     # rnp_loc arg_1 arg_2
9     # rename files with prefix = 'arg_1' to files with prefix = 'arg_2'
10     echo ' rnp_loc:' $1 $2
11     # rnp -s $1 $2
12     listY=`ls -1 $1*`
13     for yy in $listY
14     do
15     zz=`echo $yy | sed "s/^$1/$2/"`
16     mv $yy $zz
17     done
18     }
19    
20     #---------------------------
21    
22     #- exit status:
23     # 0 -> test is successful
24 jmc 1.2 # 1 -> fail in 1rst run
25     # 2 -> fail in 2nd run
26     # 3 -> fail in 3rd run
27 jmc 1.1 # 4 -> pickup*.data (written at the end of 2+2 & 4 it run) are different
28     # 5 -> pickup*.meta (written at the end of 2+2 & 4 it run) are different
29     # 6 -> missing 'data.tst' file (removed or not yet generated ?)
30     # 7 -> missing standard output from previous run
31     # 8 -> missing information (in standard output of previous run) about pickup
32     # 9 -> error in argument list
33    
34 jmc 1.2 #- default:
35     Nit=2
36     prt=1 # 1 = print some informations ; 2 = print more informations
37     action=1
38     cmdMV='mv -f'
39     tmpDir='temp_tst'
40 jmc 1.3 wait2run=0 # if needs sometime for file system syncro on all nodes
41 jmc 1.2
42     #- default executable, command-line , using MPI:
43     gcmEXE=./mitgcmuv
44     cmdEXE=
45     mpi=0
46    
47 jmc 1.1 nArg=$#
48 jmc 1.2 prev=
49     for xx ; do
50     #echo "xx='$xx'"
51     # If the previous option needs an argument, assign it.
52     if test -n "$prev"; then
53     eval "$prev=\$xx"
54     prev=
55     nArg=`expr $nArg - 2`
56     continue
57     fi
58    
59     case $xx in
60     -mpi ) mpi=1 ; nArg=`expr $nArg - 1` ;;
61     -exe ) prev=gcmEXE ;;
62     -command ) prev=cmdEXE ;;
63     *) flag=$xx ;;
64     esac
65     done
66     echo "cmdEXE='$cmdEXE' ; RUNMPI='$RUNMPI'"
67     echo "nArg=$nArg ; mpi=$mpi ; flag='$flag'"
68 jmc 1.1
69     case $nArg in
70     1) ;;
71 jmc 1.2 *) echo "Usage: `basename $0` flag [-mpi] [-exe EXECUTABLE] [-command COMMAND]"
72 jmc 1.1 echo " Check restart: compare 1 run of 2 x $Nit it long"
73     echo " with 2 consecutive runs of $Nit it long each"
74     echo " where: flag = 0 -> prepare (from a previous run) pickup & data files"
75 jmc 1.2 echo " flag = 1 -> do the 3 runs (using COMMAND"
76     echo " or simply using EXECUTABLE, default=$gcmEXE)"
77 jmc 1.1 echo " flag = 2 -> compare std_outp"
78     echo " flag = 3 -> compare pickup files"
79     echo " flag = 4 -> clean-up output files"
80     echo " flag = All -> do 0,1,2,3,4 sequentially"
81     exit 9 ;;
82     esac
83    
84 jmc 1.2 #-- set the run-command :
85     if test "x$cmdEXE" = x
86     then
87 jmc 1.3 if [ $mpi -ge 1 ] ; then
88     cmdEXE="mpirun -machinefile ../../mf -v -np 2 $gcmEXE"
89     else
90 jmc 1.2 cmdEXE=$gcmEXE
91 jmc 1.3 fi
92 jmc 1.2 fi
93 jmc 1.3 #if [ $mpi -ge 1 ] ; then cmdEXE=run_mpi ; fi
94     #echo "cmdEXE='$cmdEXE' ; RUNMPI='$RUNMPI'"
95     echo "cmdEXE='$cmdEXE'"
96 jmc 1.1 #=========================
97    
98     if test $flag = '0' -o $flag = 'All' ; then
99     #----------------------------------------------------------------------
100     # last pickup written (from previous run):
101 jmc 1.2 if [ $mpi -ge 1 ]
102 jmc 1.1 then outpRun='STDOUT.0000'
103     else outpRun='output.txt'
104     fi
105 jmc 1.2 if test -r $outpRun
106 jmc 1.1 then
107     # grep ' %CHECKPOINT ' $outpRun | tail -1
108     lastPick=`grep ' %CHECKPOINT ' $outpRun | sed 's/^.*%CHECKPOINT //' | tail -1`
109 jmc 1.2 if test "x$lastPick" = x
110     then
111 jmc 1.1 echo "no pickup information written in '$outpRun' from previous run"
112     exit 8
113     else
114     iter=`echo $lastPick | awk '{print $1}'`
115     zz=`echo $lastPick | awk '{print $2}'`
116     echo "from previous run std.outp, lastPick='$lastPick' ; iter='$iter' ; zz='$zz'"
117     fi
118 jmc 1.2 else
119 jmc 1.1 echo "no standard output file '$outpRun' from previous run"
120     exit 7
121     fi
122    
123     #- rename pickup (if needed)
124     sufx=`printf "%10.10i\n" $iter`
125     if test $zz = $sufx
126     then
127     echo "no need to change pickup sufix"
128     else
129     # echo "rename pickup sufix: $zz -> $sufx"
130     listP=`ls pickup*.${zz}* 2> /dev/null | sed 's/\..*//g' | uniq`
131     if test "x$listP" = x
132     then echo ' rename' $zz '->' $sufx ': no file to rename'
133     else
134     if [ $prt -ge 1 ] ; then echo ' rename' $zz '->' $sufx 'for all:' $listP ; fi
135     for yy in $listP
136     do
137     listF=`ls -1 $yy.${zz}*`
138     for xx in $listF
139     do
140     new=`echo $xx | sed "s/^$yy\.$zz/$yy\.$sufx/"`
141 jmc 1.2 if [ $prt -ge 2 ] ; then echo ' '$cmdMV $xx $new ; fi
142     if test $action = 1 ; then $cmdMV $xx $new ; fi
143 jmc 1.1 done
144     done
145     fi
146     fi
147     #-------------------------
148     echo "prepare parameter file 'data.tst' :"
149     cp -p -f data data.tst
150     listOut='startTime endTime nIter0 nTimeSteps nEndIter chkPtFreq pChkPtFreq globalFiles'
151     listOut=$listOut' useSingleCpuIO pickupSuff usePickupBeforeC54 mdsioLocalDir'
152     #- comment out (in data.tst) all parameters from list: 'listOut'
153     for yy in $listOut
154     do
155     if [ $prt -ge 2 ] ; then echo -n ' commenting out:' $yy ; fi
156     nn=`grep -i -c "^ *$yy *=" data.tst`
157     if [ $nn -ge 1 ]
158     then
159     listN=`grep -i -n "^ *$yy *=" data.tst | sed 's/:.*$//'`
160     if [ $prt -ge 2 ] ; then echo " : found on line: $listN" ; fi
161     for ll in $listN
162     do
163     sed "$ll s/^./#&/" data.tst > data.tmp_$$
164     # diff data.tmp_$$ data.tst
165     mv -f data.tmp_$$ data.tst
166     done
167     else if [ $prt -ge 2 ] ; then echo ' : not found' ; fi
168     fi
169     done
170     if [ $prt -ge 2 ] ; then echo ' ' ; fi
171     # add nIter0 & nTimeSteps in namelist "PARM03":
172     Dbl=`expr $Nit \* 2`
173     sed "/^ *\&PARM03/a \ nTimeSteps=$Dbl," data.tst > data.tmp_$$
174     mv -f data.tmp_$$ data.tst
175     sed "/^ *\&PARM03/a \ nIter0=$iter," data.tst > data.tmp_$$
176     mv -f data.tmp_$$ data.tst
177     echo "prepare file 'data.tst' : done"
178 jmc 1.2 if [ $prt -ge 1 ] ; then
179 jmc 1.1 echo ' diff data.tst data' ; diff data.tst data ; echo ' ' ;
180     fi
181     #---- clean up current dir: move output to temp_tst dir:
182     if test $action = 1 ; then
183     rm -rf $tmpDir
184     mkdir $tmpDir
185     mv -f *.data $tmpDir
186     mv -f *.meta $tmpDir
187 jmc 1.3 mv -f *.txt $tmpDir 2> /dev/null
188 jmc 1.2 mv -f STD???.0[0-9][0-9][0-9] $tmpDir
189 jmc 1.1 listS=`ls $tmpDir/pickup*.${sufx}* 2> /dev/null | head -1`
190     if test "x$listS" != x ; then mv $tmpDir/pickup*.${sufx}* . ; fi
191     #- move main parameter file "data":
192     mv -f data $tmpDir
193     #- do not deal with MNC pickup at all:
194     cp -p -f data.pkg data.tmp_$$
195     mv -f data.pkg $tmpDir
196     mv -f data.tmp_$$ data.pkg
197     yy='useMNC'
198     if [ $prt -ge 2 ] ; then echo -n " commenting out: $yy in data.pkg" ; fi
199     nn=`grep -i -c "^ *$yy *=" data.pkg`
200     if [ $nn -ge 1 ]
201     then
202     listN=`grep -i -n "^ *$yy *=" data.pkg | sed 's/:.*$//'`
203     if [ $prt -ge 2 ] ; then echo " : found on line: $listN" ; fi
204     for ll in $listN
205     do
206     sed "$ll s/^./#&/" data.pkg > data.tmp_$$
207 jmc 1.2 if [ $prt -ge 1 ] ; then echo ' changes in data.pkg'
208 jmc 1.1 diff data.tmp_$$ data.pkg ; echo ' ' ; fi
209     mv -f data.tmp_$$ data.pkg
210     done
211     else if [ $prt -ge 2 ] ; then echo ' : not found' ; echo ' ' ; fi
212     fi
213     fi
214     #----------------------------------------------------------------------
215     fi
216    
217     #=========================
218    
219     if test -r data.tst ; then
220     #- extract length of runs & starting iter number from file "data.tst"
221     num0=`sed -n 's/^ nIter0=//p' data.tst | sed 's/,//g' | sed 's/ //g'`
222     Dbl=`sed -n 's/^ nTimeSteps=//p' data.tst | sed 's/,//g'`
223     Nit=`expr $Dbl / 2`
224     # Nit = Nb of iter of 2nd & 3rd run (1rst one is 2 x Nit iter long)
225     else
226     echo '=> Need a readable "data.tst" file for the 2 x Nit iterations run'
227     exit 6
228     fi
229    
230     #- dir where to put the results :
231     dir1=res_2it
232     dir2=res_1iA
233     dir3=res_1iB
234    
235     #---------------------------
236     num1=`expr $num0 + $Nit`
237     num2=`expr $num0 + $Dbl`
238     num0c=`printf "%10.10i\n" $num0`
239     num1c=`printf "%10.10i\n" $num1`
240     num2c=`printf "%10.10i\n" $num2`
241     echo " start-end iter: $num0 , $num1 , $num2"
242     echo " sufix: '$num0c' '$num1c' '$num2c'"
243 jmc 1.2 echo ' cmdEXE='$cmdEXE
244 jmc 1.1 #exit
245     #---------------------------
246    
247     if test $flag = '1' -o $flag = 'All' ; then
248     #----------------------------------------------------------------------
249     #- check at the end of each run for pickup with prefix:
250     pref='pickup'
251     offLine=`grep -i -c '^ *useOffLine *= *\.TRUE\.' data.pkg`
252     if [ $offLine -ge 1 ] ; then pref='pickup_ptracers' ; fi
253     #---------------------------
254     if test -d $dir1 -o -d $dir2 -o -d $dir3
255     then echo -n 'remove dir: '
256     if test -d $dir1 ; then echo -n $dir1 ' , ' ; rm -r $dir1 ; fi
257     if test -d $dir2 ; then echo -n $dir2 ' , ' ; rm -r $dir2 ; fi
258     if test -d $dir3 ; then echo -n $dir3 ' , ' ; rm -r $dir3 ; fi
259     echo ' '
260     fi
261     mkdir $dir1 $dir2 $dir3
262     rm -f STDERR.0000
263    
264     #--- 1rst run ( 2 x Nit iter )
265     cp -p data.tst data
266     echo '==> START RUN 2 x' $Nit 'it'
267     if [ $mpi -ge 1 ]
268 jmc 1.3 then
269     sleep $wait2run
270     $cmdEXE > TTT.out.2it 2>&1
271     mv STDOUT.0000 std_outp.2it
272     cat TTT.out.2it
273 jmc 1.2 else $cmdEXE > std_outp.2it
274 jmc 1.1 fi
275     mv STDERR.0000 std__err.2it
276     out=`egrep -c 'STOP ABNORMAL END' std_outp.2it`
277     if test $out != 0
278     then echo "==> RUN 2 x $Nit it : ABNORMAL END => exit" ; exit 1 ; fi
279     if test -f $pref.ckptA.001.001.data
280     then echo "==> END RUN 2 x $Nit it"
281     else echo "==> RUN 2 x $Nit it STOP without writing $pref => exit" ; exit 1 ; fi
282     listP=`ls pickup*.ckptA* | sed 's/\..*//g' | uniq`
283     echo ' listP=' $listP
284     for xx in $listP
285     do
286     rnp_loc $xx.ckptA $xx.$num2c
287     done
288     mv *.0??.0??.* $dir1
289 jmc 1.3 txtF=`ls -1 *.txt STD???.00?? 2> /dev/null`
290     mv R?.data R?.meta DR?.data DR?.meta PHref{C,F}.??ta $txtF $dir1
291 jmc 1.1 listS=`ls $dir1/pickup*.${num0c}* 2> /dev/null | head -1`
292     if test "x$listS" != x ; then mv $dir1/pickup*.${num0c}* . ; fi
293     #--- 2nd run ( Nit iter , restart from same Iter = num0 as 1rst run )
294 jmc 1.3 sed "s/^ nTimeSteps=$Dbl/ nTimeSteps=$Nit/g" data.tst > data.tmp
295     mv -f data.tmp data
296 jmc 1.1 echo '==> START RUN 1iA'
297     if [ $mpi -ge 1 ]
298 jmc 1.3 then
299     sleep $wait2run
300     $cmdEXE > TTT.out.1iA 2>&1
301     mv STDOUT.0000 std_outp.1iA
302     cat TTT.out.1iA
303 jmc 1.2 else $cmdEXE > std_outp.1iA
304 jmc 1.1 fi
305     mv STDERR.0000 std__err.1iA
306     out=`egrep -c 'STOP ABNORMAL END' std_outp.1iA`
307     if test $out != 0
308     then echo "==> RUN 1iA : ABNORMAL END => exit" ; exit 2 ; fi
309     if test -f $pref.ckptA.001.001.data
310     then echo "==> END RUN 1iA"
311     else echo "==> RUN 1iA STOP without writing $pref => exit" ; exit 2 ; fi
312     for xx in $listP
313     do
314     rnp_loc $xx.ckptA $xx.$num1c
315     done
316     mv *.0??.0??.* $dir2
317 jmc 1.3 txtF=`ls -1 *.txt STD???.00?? 2> /dev/null`
318 jmc 1.1 mv R?.data R?.meta DR?.data DR?.meta $txtF $dir2
319     listS=`ls $dir2/pickup*.${num0c}* 2> /dev/null | head -1`
320     if test "x$listS" != x ; then mv $dir2/pickup*.${num0c}* . ; fi
321     #--- 3rd run ( Nit iter , restart from 2nd )
322     ln -s $dir2/pickup*.$num1c.* .
323     sed "s/^ nIter0=$num0/ nIter0=$num1/g" data > data.tmp
324     mv -f data.tmp data
325     echo '==> START RUN 1iB'
326     if [ $mpi -ge 1 ]
327 jmc 1.3 then
328     sleep $wait2run
329     $cmdEXE > TTT.out.1iB 2>&1
330     mv STDOUT.0000 std_outp.1iB
331     cat TTT.out.1iB
332 jmc 1.2 else $cmdEXE > std_outp.1iB
333 jmc 1.1 fi
334     mv STDERR.0000 std__err.1iB
335     out=`egrep -c 'STOP ABNORMAL END' std_outp.1iB`
336     if test $out != 0
337     then echo "==> RUN 1iB : ABNORMAL END => exit" ; exit 3 ; fi
338     if test -f $pref.ckptA.001.001.data
339     then echo "==> END RUN 1iB"
340     else echo "==> RUN 1iB STOP without writing $pref => exit" ; exit 3 ; fi
341     for xx in $listP
342     do
343     rnp_loc $xx.ckptA $xx.$num2c
344     done
345     mv *.0??.0??.* $dir3
346 jmc 1.3 txtF=`ls -1 *.txt STD???.00?? 2> /dev/null`
347 jmc 1.1 mv R?.data R?.meta DR?.data DR?.meta $txtF $dir3
348     listS=`ls $dir3/pickup*.${num0c}* 2> /dev/null | head -1`
349     if test "x$listS" != x ; then mv $dir3/pickup*.${num0c}* . ; fi
350     rm $dir3/pickup*.$num1c.*
351     rm data
352     #----------------------------------------------------------------------
353     fi
354    
355     if test $flag = '2' -o $flag = 'All' ; then
356     #----------------------------------------------------------------------
357     echo ' ' ; echo '== compare cg2d_init_res :'
358     echo ' run 1iA:'
359     grep "cg2d_init_res" std_outp.1iA \
360     | sed 's/.* cg2d_init_res =//'
361     echo ' run 1iB:'
362     grep "cg2d_init_res" std_outp.1iB \
363     | sed 's/.* cg2d_init_res =//'
364     echo ' run 2it:'
365     grep "cg2d_init_res" std_outp.2it \
366     | sed 's/.* cg2d_init_res =//'
367     #----------------------------------------------------------------------
368     fi
369    
370     if test $flag = '3' -o $flag = 'All' ; then
371     #----------------------------------------------------------------------
372 jmc 1.2 echo ' '
373 jmc 1.1 echo "== diff pickup files : end of 1rst run (2x$Nit it) & end of 3rd run (2nd $Nit it)"
374     listP=`( cd $dir1 ; ls pickup*.$num2c* | sed 's/\..*//g' | uniq )`
375     chkmeta='Y'
376     for yy in $listP
377     do
378     listY=`(cd $dir1 ; ls $yy.$num2c.*.data | sed "s/$yy\.$num2c\.//" | sed "s/\.data//")`
379     zz=$yy.$num2c
380     echo '--> file='$zz', listY='$listY
381     for xx in $listY
382     do
383     echo ' diff' $dir1/$zz.$xx.data $dir3
384     diff $dir1/$zz.$xx.data $dir3
385     out=$?
386     if test $out != 0 ; then
387     echo 'Diff outp=' $out ' ==> stop'
388     exit 4
389     fi
390     if test $chkmeta = 'Y' -a -f $dir1/$zz.$xx.meta ; then
391     echo ' diff' $dir1/$zz.$xx.meta $dir3
392     diff $dir1/$zz.$xx.meta $dir3
393     out=$?
394 jmc 1.2 if test $out != 0 ; then
395 jmc 1.1 echo 'Diff outp=' $out ' ==> stop'
396     exit 5
397     fi
398     fi
399     done
400     done
401     #----------------------------------------------------------------------
402     fi
403    
404     if test $flag = '4' -o $flag = 'All' ; then
405     #-------------
406 jmc 1.2 echo ' '
407 jmc 1.1 echo "== clean-up and reset :"
408     echo '--> remove output dir and output files:'
409     echo ' rm -rf' $dir1 $dir2 $dir3
410     rm -rf $dir1 $dir2 $dir3
411     echo ' rm -f' std_????.?i?
412     rm -f std_????.?i?
413 jmc 1.3 rm -f TTT.out.?i? 2> /dev/null
414 jmc 1.1 echo ' rm -f' data.pkg data.tst
415     rm -f data.pkg data.tst
416     #- move back files from temp_tst dir:
417     if test -d $tmpDir ; then
418     echo "--> move back files from 'temp_tst' dir."
419     cd $tmpDir ; mv -f * .. ; cd ..
420     rmdir $tmpDir
421     fi
422     #-------------
423     fi
424     exit 0

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