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jmc |
1.1 |
#! /usr/bin/env bash |
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jmc |
1.2 |
# $Header: /u/gcmpack/MITgcm/tools/tst_2+2,v 1.1 2007/12/25 22:07:54 jmc Exp $ |
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jmc |
1.1 |
# $Name: $ |
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jmc |
1.2 |
run_mpi() |
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{ |
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# run_mpi output_file |
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echo "execute: '$RUNMPI'" |
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$RUNMPI |
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if test $# = 1 |
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then mv STDOUT.0000 $1 |
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echo 'mv STDOUT.0000' $1 |
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fi |
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} |
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jmc |
1.1 |
rnp_loc() |
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{ |
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# rnp_loc arg_1 arg_2 |
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# rename files with prefix = 'arg_1' to files with prefix = 'arg_2' |
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echo ' rnp_loc:' $1 $2 |
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# rnp -s $1 $2 |
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listY=`ls -1 $1*` |
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for yy in $listY |
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do |
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zz=`echo $yy | sed "s/^$1/$2/"` |
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mv $yy $zz |
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done |
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} |
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#--------------------------- |
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#- exit status: |
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# 0 -> test is successful |
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jmc |
1.2 |
# 1 -> fail in 1rst run |
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# 2 -> fail in 2nd run |
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# 3 -> fail in 3rd run |
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jmc |
1.1 |
# 4 -> pickup*.data (written at the end of 2+2 & 4 it run) are different |
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# 5 -> pickup*.meta (written at the end of 2+2 & 4 it run) are different |
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# 6 -> missing 'data.tst' file (removed or not yet generated ?) |
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# 7 -> missing standard output from previous run |
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# 8 -> missing information (in standard output of previous run) about pickup |
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# 9 -> error in argument list |
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jmc |
1.2 |
#- default: |
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Nit=2 |
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prt=1 # 1 = print some informations ; 2 = print more informations |
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action=1 |
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cmdMV='mv -f' |
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tmpDir='temp_tst' |
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#- default executable, command-line , using MPI: |
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gcmEXE=./mitgcmuv |
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cmdEXE= |
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mpi=0 |
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jmc |
1.1 |
nArg=$# |
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jmc |
1.2 |
prev= |
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for xx ; do |
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#echo "xx='$xx'" |
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# If the previous option needs an argument, assign it. |
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if test -n "$prev"; then |
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eval "$prev=\$xx" |
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prev= |
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nArg=`expr $nArg - 2` |
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continue |
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fi |
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case $xx in |
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-mpi ) mpi=1 ; nArg=`expr $nArg - 1` ;; |
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-exe ) prev=gcmEXE ;; |
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-command ) prev=cmdEXE ;; |
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*) flag=$xx ;; |
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esac |
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done |
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echo "cmdEXE='$cmdEXE' ; RUNMPI='$RUNMPI'" |
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echo "nArg=$nArg ; mpi=$mpi ; flag='$flag'" |
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jmc |
1.1 |
|
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case $nArg in |
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1) ;; |
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jmc |
1.2 |
*) echo "Usage: `basename $0` flag [-mpi] [-exe EXECUTABLE] [-command COMMAND]" |
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jmc |
1.1 |
echo " Check restart: compare 1 run of 2 x $Nit it long" |
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echo " with 2 consecutive runs of $Nit it long each" |
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echo " where: flag = 0 -> prepare (from a previous run) pickup & data files" |
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jmc |
1.2 |
echo " flag = 1 -> do the 3 runs (using COMMAND" |
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echo " or simply using EXECUTABLE, default=$gcmEXE)" |
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jmc |
1.1 |
echo " flag = 2 -> compare std_outp" |
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echo " flag = 3 -> compare pickup files" |
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echo " flag = 4 -> clean-up output files" |
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echo " flag = All -> do 0,1,2,3,4 sequentially" |
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exit 9 ;; |
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esac |
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jmc |
1.2 |
#-- set the run-command : |
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if test "x$cmdEXE" = x |
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then |
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RUNMPI="mpirun -machinefile ../../mf -v -np 2 $gcmEXE" |
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cmdEXE=$gcmEXE |
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else |
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RUNMPI="$cmdEXE" |
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fi |
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if [ $mpi -ge 1 ] ; then cmdEXE=run_mpi ; fi |
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echo "cmdEXE='$cmdEXE' ; RUNMPI='$RUNMPI'" |
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jmc |
1.1 |
#========================= |
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if test $flag = '0' -o $flag = 'All' ; then |
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#---------------------------------------------------------------------- |
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# last pickup written (from previous run): |
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jmc |
1.2 |
if [ $mpi -ge 1 ] |
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jmc |
1.1 |
then outpRun='STDOUT.0000' |
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else outpRun='output.txt' |
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fi |
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jmc |
1.2 |
if test -r $outpRun |
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jmc |
1.1 |
then |
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# grep ' %CHECKPOINT ' $outpRun | tail -1 |
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lastPick=`grep ' %CHECKPOINT ' $outpRun | sed 's/^.*%CHECKPOINT //' | tail -1` |
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jmc |
1.2 |
if test "x$lastPick" = x |
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then |
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jmc |
1.1 |
echo "no pickup information written in '$outpRun' from previous run" |
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exit 8 |
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else |
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iter=`echo $lastPick | awk '{print $1}'` |
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zz=`echo $lastPick | awk '{print $2}'` |
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echo "from previous run std.outp, lastPick='$lastPick' ; iter='$iter' ; zz='$zz'" |
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fi |
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jmc |
1.2 |
else |
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jmc |
1.1 |
echo "no standard output file '$outpRun' from previous run" |
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exit 7 |
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fi |
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#- rename pickup (if needed) |
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sufx=`printf "%10.10i\n" $iter` |
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if test $zz = $sufx |
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then |
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echo "no need to change pickup sufix" |
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else |
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# echo "rename pickup sufix: $zz -> $sufx" |
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listP=`ls pickup*.${zz}* 2> /dev/null | sed 's/\..*//g' | uniq` |
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if test "x$listP" = x |
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then echo ' rename' $zz '->' $sufx ': no file to rename' |
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else |
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if [ $prt -ge 1 ] ; then echo ' rename' $zz '->' $sufx 'for all:' $listP ; fi |
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for yy in $listP |
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do |
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listF=`ls -1 $yy.${zz}*` |
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for xx in $listF |
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do |
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new=`echo $xx | sed "s/^$yy\.$zz/$yy\.$sufx/"` |
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jmc |
1.2 |
if [ $prt -ge 2 ] ; then echo ' '$cmdMV $xx $new ; fi |
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if test $action = 1 ; then $cmdMV $xx $new ; fi |
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jmc |
1.1 |
done |
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done |
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fi |
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fi |
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#------------------------- |
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echo "prepare parameter file 'data.tst' :" |
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cp -p -f data data.tst |
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listOut='startTime endTime nIter0 nTimeSteps nEndIter chkPtFreq pChkPtFreq globalFiles' |
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listOut=$listOut' useSingleCpuIO pickupSuff usePickupBeforeC54 mdsioLocalDir' |
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#- comment out (in data.tst) all parameters from list: 'listOut' |
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for yy in $listOut |
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do |
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if [ $prt -ge 2 ] ; then echo -n ' commenting out:' $yy ; fi |
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nn=`grep -i -c "^ *$yy *=" data.tst` |
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if [ $nn -ge 1 ] |
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then |
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listN=`grep -i -n "^ *$yy *=" data.tst | sed 's/:.*$//'` |
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if [ $prt -ge 2 ] ; then echo " : found on line: $listN" ; fi |
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for ll in $listN |
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do |
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sed "$ll s/^./#&/" data.tst > data.tmp_$$ |
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# diff data.tmp_$$ data.tst |
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mv -f data.tmp_$$ data.tst |
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done |
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else if [ $prt -ge 2 ] ; then echo ' : not found' ; fi |
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fi |
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done |
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if [ $prt -ge 2 ] ; then echo ' ' ; fi |
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# add nIter0 & nTimeSteps in namelist "PARM03": |
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Dbl=`expr $Nit \* 2` |
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sed "/^ *\&PARM03/a \ nTimeSteps=$Dbl," data.tst > data.tmp_$$ |
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mv -f data.tmp_$$ data.tst |
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sed "/^ *\&PARM03/a \ nIter0=$iter," data.tst > data.tmp_$$ |
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mv -f data.tmp_$$ data.tst |
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echo "prepare file 'data.tst' : done" |
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jmc |
1.2 |
if [ $prt -ge 1 ] ; then |
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jmc |
1.1 |
echo ' diff data.tst data' ; diff data.tst data ; echo ' ' ; |
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fi |
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#---- clean up current dir: move output to temp_tst dir: |
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if test $action = 1 ; then |
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rm -rf $tmpDir |
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mkdir $tmpDir |
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mv -f *.data $tmpDir |
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mv -f *.meta $tmpDir |
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mv -f *.txt $tmpDir |
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jmc |
1.2 |
mv -f STD???.0[0-9][0-9][0-9] $tmpDir |
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jmc |
1.1 |
listS=`ls $tmpDir/pickup*.${sufx}* 2> /dev/null | head -1` |
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if test "x$listS" != x ; then mv $tmpDir/pickup*.${sufx}* . ; fi |
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#- move main parameter file "data": |
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mv -f data $tmpDir |
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#- do not deal with MNC pickup at all: |
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cp -p -f data.pkg data.tmp_$$ |
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mv -f data.pkg $tmpDir |
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mv -f data.tmp_$$ data.pkg |
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yy='useMNC' |
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if [ $prt -ge 2 ] ; then echo -n " commenting out: $yy in data.pkg" ; fi |
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nn=`grep -i -c "^ *$yy *=" data.pkg` |
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if [ $nn -ge 1 ] |
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then |
| 210 |
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listN=`grep -i -n "^ *$yy *=" data.pkg | sed 's/:.*$//'` |
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if [ $prt -ge 2 ] ; then echo " : found on line: $listN" ; fi |
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for ll in $listN |
| 213 |
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do |
| 214 |
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sed "$ll s/^./#&/" data.pkg > data.tmp_$$ |
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jmc |
1.2 |
if [ $prt -ge 1 ] ; then echo ' changes in data.pkg' |
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jmc |
1.1 |
diff data.tmp_$$ data.pkg ; echo ' ' ; fi |
| 217 |
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mv -f data.tmp_$$ data.pkg |
| 218 |
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done |
| 219 |
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else if [ $prt -ge 2 ] ; then echo ' : not found' ; echo ' ' ; fi |
| 220 |
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fi |
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fi |
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#---------------------------------------------------------------------- |
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fi |
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#========================= |
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if test -r data.tst ; then |
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#- extract length of runs & starting iter number from file "data.tst" |
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num0=`sed -n 's/^ nIter0=//p' data.tst | sed 's/,//g' | sed 's/ //g'` |
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Dbl=`sed -n 's/^ nTimeSteps=//p' data.tst | sed 's/,//g'` |
| 231 |
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Nit=`expr $Dbl / 2` |
| 232 |
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# Nit = Nb of iter of 2nd & 3rd run (1rst one is 2 x Nit iter long) |
| 233 |
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else |
| 234 |
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echo '=> Need a readable "data.tst" file for the 2 x Nit iterations run' |
| 235 |
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exit 6 |
| 236 |
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fi |
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| 238 |
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#- dir where to put the results : |
| 239 |
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dir1=res_2it |
| 240 |
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dir2=res_1iA |
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dir3=res_1iB |
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#--------------------------- |
| 244 |
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num1=`expr $num0 + $Nit` |
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num2=`expr $num0 + $Dbl` |
| 246 |
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num0c=`printf "%10.10i\n" $num0` |
| 247 |
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num1c=`printf "%10.10i\n" $num1` |
| 248 |
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num2c=`printf "%10.10i\n" $num2` |
| 249 |
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echo " start-end iter: $num0 , $num1 , $num2" |
| 250 |
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echo " sufix: '$num0c' '$num1c' '$num2c'" |
| 251 |
jmc |
1.2 |
echo ' cmdEXE='$cmdEXE |
| 252 |
jmc |
1.1 |
#exit |
| 253 |
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#--------------------------- |
| 254 |
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| 255 |
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if test $flag = '1' -o $flag = 'All' ; then |
| 256 |
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#---------------------------------------------------------------------- |
| 257 |
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#- check at the end of each run for pickup with prefix: |
| 258 |
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pref='pickup' |
| 259 |
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offLine=`grep -i -c '^ *useOffLine *= *\.TRUE\.' data.pkg` |
| 260 |
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if [ $offLine -ge 1 ] ; then pref='pickup_ptracers' ; fi |
| 261 |
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#--------------------------- |
| 262 |
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if test -d $dir1 -o -d $dir2 -o -d $dir3 |
| 263 |
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then echo -n 'remove dir: ' |
| 264 |
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if test -d $dir1 ; then echo -n $dir1 ' , ' ; rm -r $dir1 ; fi |
| 265 |
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if test -d $dir2 ; then echo -n $dir2 ' , ' ; rm -r $dir2 ; fi |
| 266 |
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if test -d $dir3 ; then echo -n $dir3 ' , ' ; rm -r $dir3 ; fi |
| 267 |
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echo ' ' |
| 268 |
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fi |
| 269 |
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mkdir $dir1 $dir2 $dir3 |
| 270 |
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rm -f STDERR.0000 |
| 271 |
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| 272 |
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#--- 1rst run ( 2 x Nit iter ) |
| 273 |
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cp -p data.tst data |
| 274 |
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echo '==> START RUN 2 x' $Nit 'it' |
| 275 |
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if [ $mpi -ge 1 ] |
| 276 |
jmc |
1.2 |
then $cmdEXE std_outp.2it > TTT.out.2it 2>&1 |
| 277 |
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else $cmdEXE > std_outp.2it |
| 278 |
jmc |
1.1 |
fi |
| 279 |
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mv STDERR.0000 std__err.2it |
| 280 |
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out=`egrep -c 'STOP ABNORMAL END' std_outp.2it` |
| 281 |
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if test $out != 0 |
| 282 |
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then echo "==> RUN 2 x $Nit it : ABNORMAL END => exit" ; exit 1 ; fi |
| 283 |
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if test -f $pref.ckptA.001.001.data |
| 284 |
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then echo "==> END RUN 2 x $Nit it" |
| 285 |
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else echo "==> RUN 2 x $Nit it STOP without writing $pref => exit" ; exit 1 ; fi |
| 286 |
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listP=`ls pickup*.ckptA* | sed 's/\..*//g' | uniq` |
| 287 |
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echo ' listP=' $listP |
| 288 |
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for xx in $listP |
| 289 |
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do |
| 290 |
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rnp_loc $xx.ckptA $xx.$num2c |
| 291 |
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done |
| 292 |
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mv *.0??.0??.* $dir1 |
| 293 |
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txtF=`ls -1 *.txt 2> /dev/null` |
| 294 |
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mv R?.data R?.meta DR?.data DR?.meta $txtF $dir1 |
| 295 |
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listS=`ls $dir1/pickup*.${num0c}* 2> /dev/null | head -1` |
| 296 |
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if test "x$listS" != x ; then mv $dir1/pickup*.${num0c}* . ; fi |
| 297 |
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#--- 2nd run ( Nit iter , restart from same Iter = num0 as 1rst run ) |
| 298 |
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sed "s/^ nTimeSteps=$Dbl/ nTimeSteps=$Nit/g" data.tst > data |
| 299 |
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echo '==> START RUN 1iA' |
| 300 |
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if [ $mpi -ge 1 ] |
| 301 |
jmc |
1.2 |
then $cmdEXE std_outp.1iA > TTT.out.1iA 2>&1 |
| 302 |
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else $cmdEXE > std_outp.1iA |
| 303 |
jmc |
1.1 |
fi |
| 304 |
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mv STDERR.0000 std__err.1iA |
| 305 |
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out=`egrep -c 'STOP ABNORMAL END' std_outp.1iA` |
| 306 |
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if test $out != 0 |
| 307 |
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then echo "==> RUN 1iA : ABNORMAL END => exit" ; exit 2 ; fi |
| 308 |
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if test -f $pref.ckptA.001.001.data |
| 309 |
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then echo "==> END RUN 1iA" |
| 310 |
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else echo "==> RUN 1iA STOP without writing $pref => exit" ; exit 2 ; fi |
| 311 |
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for xx in $listP |
| 312 |
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do |
| 313 |
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rnp_loc $xx.ckptA $xx.$num1c |
| 314 |
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done |
| 315 |
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mv *.0??.0??.* $dir2 |
| 316 |
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txtF=`ls -1 *.txt 2> /dev/null` |
| 317 |
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mv R?.data R?.meta DR?.data DR?.meta $txtF $dir2 |
| 318 |
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listS=`ls $dir2/pickup*.${num0c}* 2> /dev/null | head -1` |
| 319 |
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if test "x$listS" != x ; then mv $dir2/pickup*.${num0c}* . ; fi |
| 320 |
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#--- 3rd run ( Nit iter , restart from 2nd ) |
| 321 |
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ln -s $dir2/pickup*.$num1c.* . |
| 322 |
|
|
sed "s/^ nIter0=$num0/ nIter0=$num1/g" data > data.tmp |
| 323 |
|
|
mv -f data.tmp data |
| 324 |
|
|
echo '==> START RUN 1iB' |
| 325 |
|
|
if [ $mpi -ge 1 ] |
| 326 |
jmc |
1.2 |
then $cmdEXE std_outp.1iB > TTT.out.1iB 2>&1 |
| 327 |
|
|
else $cmdEXE > std_outp.1iB |
| 328 |
jmc |
1.1 |
fi |
| 329 |
|
|
mv STDERR.0000 std__err.1iB |
| 330 |
|
|
out=`egrep -c 'STOP ABNORMAL END' std_outp.1iB` |
| 331 |
|
|
if test $out != 0 |
| 332 |
|
|
then echo "==> RUN 1iB : ABNORMAL END => exit" ; exit 3 ; fi |
| 333 |
|
|
if test -f $pref.ckptA.001.001.data |
| 334 |
|
|
then echo "==> END RUN 1iB" |
| 335 |
|
|
else echo "==> RUN 1iB STOP without writing $pref => exit" ; exit 3 ; fi |
| 336 |
|
|
for xx in $listP |
| 337 |
|
|
do |
| 338 |
|
|
rnp_loc $xx.ckptA $xx.$num2c |
| 339 |
|
|
done |
| 340 |
|
|
mv *.0??.0??.* $dir3 |
| 341 |
|
|
txtF=`ls -1 *.txt 2> /dev/null` |
| 342 |
|
|
mv R?.data R?.meta DR?.data DR?.meta $txtF $dir3 |
| 343 |
|
|
listS=`ls $dir3/pickup*.${num0c}* 2> /dev/null | head -1` |
| 344 |
|
|
if test "x$listS" != x ; then mv $dir3/pickup*.${num0c}* . ; fi |
| 345 |
|
|
rm $dir3/pickup*.$num1c.* |
| 346 |
|
|
rm data |
| 347 |
|
|
#---------------------------------------------------------------------- |
| 348 |
|
|
fi |
| 349 |
|
|
|
| 350 |
|
|
if test $flag = '2' -o $flag = 'All' ; then |
| 351 |
|
|
#---------------------------------------------------------------------- |
| 352 |
|
|
echo ' ' ; echo '== compare cg2d_init_res :' |
| 353 |
|
|
echo ' run 1iA:' |
| 354 |
|
|
grep "cg2d_init_res" std_outp.1iA \ |
| 355 |
|
|
| sed 's/.* cg2d_init_res =//' |
| 356 |
|
|
echo ' run 1iB:' |
| 357 |
|
|
grep "cg2d_init_res" std_outp.1iB \ |
| 358 |
|
|
| sed 's/.* cg2d_init_res =//' |
| 359 |
|
|
echo ' run 2it:' |
| 360 |
|
|
grep "cg2d_init_res" std_outp.2it \ |
| 361 |
|
|
| sed 's/.* cg2d_init_res =//' |
| 362 |
|
|
#---------------------------------------------------------------------- |
| 363 |
|
|
fi |
| 364 |
|
|
|
| 365 |
|
|
if test $flag = '3' -o $flag = 'All' ; then |
| 366 |
|
|
#---------------------------------------------------------------------- |
| 367 |
jmc |
1.2 |
echo ' ' |
| 368 |
jmc |
1.1 |
echo "== diff pickup files : end of 1rst run (2x$Nit it) & end of 3rd run (2nd $Nit it)" |
| 369 |
|
|
listP=`( cd $dir1 ; ls pickup*.$num2c* | sed 's/\..*//g' | uniq )` |
| 370 |
|
|
chkmeta='Y' |
| 371 |
|
|
for yy in $listP |
| 372 |
|
|
do |
| 373 |
|
|
listY=`(cd $dir1 ; ls $yy.$num2c.*.data | sed "s/$yy\.$num2c\.//" | sed "s/\.data//")` |
| 374 |
|
|
zz=$yy.$num2c |
| 375 |
|
|
echo '--> file='$zz', listY='$listY |
| 376 |
|
|
for xx in $listY |
| 377 |
|
|
do |
| 378 |
|
|
echo ' diff' $dir1/$zz.$xx.data $dir3 |
| 379 |
|
|
diff $dir1/$zz.$xx.data $dir3 |
| 380 |
|
|
out=$? |
| 381 |
|
|
if test $out != 0 ; then |
| 382 |
|
|
echo 'Diff outp=' $out ' ==> stop' |
| 383 |
|
|
exit 4 |
| 384 |
|
|
fi |
| 385 |
|
|
if test $chkmeta = 'Y' -a -f $dir1/$zz.$xx.meta ; then |
| 386 |
|
|
echo ' diff' $dir1/$zz.$xx.meta $dir3 |
| 387 |
|
|
diff $dir1/$zz.$xx.meta $dir3 |
| 388 |
|
|
out=$? |
| 389 |
jmc |
1.2 |
if test $out != 0 ; then |
| 390 |
jmc |
1.1 |
echo 'Diff outp=' $out ' ==> stop' |
| 391 |
|
|
exit 5 |
| 392 |
|
|
fi |
| 393 |
|
|
fi |
| 394 |
|
|
done |
| 395 |
|
|
done |
| 396 |
|
|
#---------------------------------------------------------------------- |
| 397 |
|
|
fi |
| 398 |
|
|
|
| 399 |
|
|
if test $flag = '4' -o $flag = 'All' ; then |
| 400 |
|
|
#------------- |
| 401 |
jmc |
1.2 |
echo ' ' |
| 402 |
jmc |
1.1 |
echo "== clean-up and reset :" |
| 403 |
|
|
echo '--> remove output dir and output files:' |
| 404 |
|
|
echo ' rm -rf' $dir1 $dir2 $dir3 |
| 405 |
|
|
rm -rf $dir1 $dir2 $dir3 |
| 406 |
|
|
echo ' rm -f' std_????.?i? |
| 407 |
|
|
rm -f std_????.?i? |
| 408 |
|
|
echo ' rm -f' data.pkg data.tst |
| 409 |
|
|
rm -f data.pkg data.tst |
| 410 |
|
|
#- move back files from temp_tst dir: |
| 411 |
|
|
if test -d $tmpDir ; then |
| 412 |
|
|
echo "--> move back files from 'temp_tst' dir." |
| 413 |
|
|
cd $tmpDir ; mv -f * .. ; cd .. |
| 414 |
|
|
rmdir $tmpDir |
| 415 |
|
|
fi |
| 416 |
|
|
#------------- |
| 417 |
|
|
fi |
| 418 |
|
|
exit 0 |
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