/[MITgcm]/MITgcm/tools/genmake

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-revision 1.4 by cnh,
Tue Sep 29 18:50:57 1998 UTC
+revision 1.39 by adcroft,
Tue Jul 31 15:22:12 2001 UTC
 Line 1
  #!/bin/csh -f
  #
  # $Header$
+ # $Name$
  #
  # Makefile generator for MITgcm UV codes
- #   created by cnh 03/98
+ #   created  by cnh 03/98
- #   adapted by aja 06/98
+ #   adapted  by aja 06/98
+ #   modified by aja 01/00
+ # Default lists
+ set DISABLE = ( aim autodiff cal cost ctrl ecco exf grdchk )
+ set ENABLE  = ( )
+ set MODS  = ( )
+ # Grab variables/lists from .genmakerc
+ if (-r .genmakerc) source .genmakerc
  # Process command-line arguments
  set allargs=( $argv )
  while ($#allargs)
   set arg = $allargs[1]
   switch ($arg)
-  case -makefile*:
+  case -makefile:
-    if ($arg == "-makefile") then
+    set mfile = ( Makefile )
-      set mfile = ( Makefile )
+    breaksw
-    else
+  case -makefile=*:
-      set mfile = ( `echo $arg | sed 's/-makefile=//' `)
+    set mfile = ( `echo $arg | sed 's/-makefile=//' `)
-    endif
     breaksw
   case -platform:
   case -platform=:
-Line 25 
 while ($#allargs)
+Line 34 
 while ($#allargs)
     exit
     breaksw
   case -platform*:
+    if ($?platform) then
+     echo Option -platform=dir can only be specified once.; exit 1
+    endif
     set platform = ( `echo $arg | sed 's/-platform=//' `)
     breaksw
+  case -rootdir:
+  case -rootdir=:
+    echo "To specify root directory you must specify one with -rootdir=dir"
+    echo "with NO space eg. -rootdir=../../..  or  -rootdir=/usr/people/joe/src"
+    exit
+    breaksw
+  case -rootdir=*:
+    if ($?ROOTDIR) then
+     echo "***" Warning: variable \$ROOTDIR is already set to $ROOTDIR
+     echo "***" Command line \"$arg\" will override this.
+    endif
+    set ROOTDIR = ( `echo $arg | sed 's/-rootdir=//' `)
+    breaksw
+  case -mods:
+  case -mods=:
+    echo "To specify an additional source directory you must specify one with -mods=dir"
+    echo "with NO space eg. -mods=../code  or  -mods=/usr/people/joe/src"
+    exit
+    breaksw
+  case -mods=*:
+    set MODS = ( $MODS `echo $arg | sed 's/-mods=//' | sed 's/,/ /g' `)
+    breaksw
+  case -disable:
+  case -disable=:
+    echo "To disable packages from compilation use -disable=pkg1,pkg2"
+    echo "with NO spaces eg. -disable=kpp,gmredi or -disable=all (to enable all packages)"
+    exit
+    breaksw
+  case -disable=*:
+    set DISABLE = ( $DISABLE `echo $arg | sed 's/-disable=//' | sed 's/,/ /g' `)
+    breaksw
+  case -enable:
+  case -enable=:
+    echo "To enable packages from compilation use -enable=pkg1,pkg2"
+    echo "with NO spaces eg. -enable=aim or -enable=all (to enable all packages)"
+    echo "-enable overrides -disable, ie. a package listed in both is enabled"
+    exit
+    breaksw
+  case -enable=*:
+    set ENABLE = ( $ENABLE `echo $arg | sed 's/-enable=//' | sed 's/,/ /g' `)
+    breaksw
   case -mpi:
     echo "Enabling MPI options"
     set USEMPI
     breaksw
+  case -jam:
+    set include_jam_libs
+    echo "Including paths to JAM libraries"
+    breaksw
   case -help:
-    echo "usage: $0 [-help] [-makefile[=...]] [-platform=...] [-mpi]"
+    echo "usage: $0 [-help] [-makefile[=...]] [-platform=...] [-mpi] [-jam] [-disable=pkg1[,pkg2,...]] [-enable=pkg1[,pkg2,...]] [-mods=dir1[,dir2,...]] [-rootdir=dir]"
+ cat << EOF
+ $0 is used to generate the Makefile in the current directory.
+ Typical invocations are:
+  o from "bin":   ../tools/genmake
+  o from "verification/expt/code": ../../../tools/genmake
+  o from "verification/expt/input": ../../../tools/genmake -mods=../code
+  o from a scratch directory: ~/mitgcm/tools/genmake -rootdir=~/mitgcm
+    or  ~/mitgcm/tools/genmake -rootdir=~/mitgcm -mods=~/mymods
+ Packages (collected modules of code)  can be disabled to avoid unnecessary
+ compilation of unused code. For instance if you know you will not
+ use GM/Redi, KPP and OBCS and they are appropriate turned-off in the
+ configuration:
+    .../tools/genmake -disable=gmredi,kpp,obcs
+ If you add some source files you can re-call the previous instance of
+ genmake with "make makefile".
+ genmake also reads the file .genmakerc which can be used to configure
+ options (primarily the command-line options above) for particular experiments.
+ EOF
     exit
     breaksw
   default:
-Line 43 
 while ($#allargs)
+Line 123 
 while ($#allargs)
   endsw
   shift allargs
  end
- if ($?platform == 0) set platform = (`uname -p`)
+ # Default actions/options
- if ($?mfile == 0) set mfile = ( Makefile.$platform )
+ # If platform wasn't specified then determine platform type of the host
+ if (! $?platform) then
+  set platform = (`uname`)
+ endif
+ # If name of makefile wasn't specified then use default "Makefile"
+ if (! $?mfile) set mfile = ( Makefile )
  set mach  = ( `uname -a` )
  echo Operating system: $mach
  # Directories for source, includes, binaries and executables
- # Note
+ #
- # o If you prefer/need everything under a single directory
+ # If -rootdir wasn't specified then assume script is being run from bin
- #   copy everything in ../eesupp/src, ../model/src,
+ # but if it was supplied then we should place the executable in the build dir
- #   ../eesupp/inc and ../model/inc into a directory and then
+ if (! $?ROOTDIR) then
- #   edit the paths below to ./
+   set pwd=`pwd`
- set SOURCEDIRS  = ( ../eesupp/src/ ../model/src/ ../diags/src/)
+   if ($pwd:t == bin & -d ../model & -d ../eesupp & -d ../pkg) then
- set INCLUDEDIRS = ( ../eesupp/inc/ ../model/inc/ ../diags/inc/)
+     set ROOTDIR = ( .. )
- set BUILDDIR    = ( ../bin/ )
+   endif
- set EXEDIR      = ( ../exe/ )
+ endif
- set EXECUTABLE  = ( mitgcmuv )
+ # Scan for logical ROOTDIR
+ if (! $?ROOTDIR) then
+   foreach dr (. .. ../.. ../../.. ../../../.. ../../../../..)
+     if (-d $dr/model & -d $dr/eesupp & -d $dr/pkg) then
+       set ROOTDIR = $dr
+       echo ROOTDIR was not specified. Setting ROOTDIR = \"$ROOTDIR\"
+       break
+     endif
+   end
+ endif
+ if (! $?ROOTDIR) then
+   echo Root directory was not specified and could not be determined.
+   echo Specify the root location of the model source with -rootdir=dir
+   exit 1
+ endif
+ if (! -d $ROOTDIR) then
+   echo Root directory $ROOTDIR not found.;exit 1
+ endif
+ # If -mods wasn't specified then we will assume that we can find all the
+ # source code in the standard directories
+ if (! $?MODS) then
+  set SOURCEDIRS  = ( )
+  set INCLUDEDIRS = ( . )
+ else
+  set SOURCEDIRS  = ( $MODS )
+  set INCLUDEDIRS = ( . $MODS )
+ endif
+ if (! $?BUILDDIR) set BUILDDIR = ( . )
+ if (! -d $BUILDDIR) then
+   echo Build directory $BUILDDIR not found.;exit 1
+ endif
+ if (! $?EXEDIR) then
+   set pwd=`pwd`
+   if ($pwd:t == bin & -d ../exe & $ROOTDIR == ..) then
+    set EXEDIR = ( ../exe )
+   else
+    set EXEDIR = ( . )
+   endif
+ endif
+ if (! -d $EXEDIR) then
+   echo Executable directory $EXEDIR not found.;exit 1
+ endif
+ if (! $?TOOLSDIR) set TOOLSDIR = ( $ROOTDIR/tools )
+ if (! -d $TOOLSDIR) then
+   echo Tools directory $TOOLSDIR not found.;exit 1
+ endif
+ if (! $?EXECUTABLE) set EXECUTABLE  = ( mitgcmuv )
+ # We have a special set of source files in eesupp/src which
+ # are generated from some template source files. We'll make them
+ # first so the appear as regular source code
+ if (-r $ROOTDIR/eesupp/src/Makefile) then
+  echo Making source files in eesupp from templates...
+  (cd $ROOTDIR/eesupp/src/; make) >& make_eesupp.errs
+  if ($status == 0) then
+    rm -f make_eesupp.errs
+  else
+    cat make_eesupp.errs
+    exit 2
+  endif
+ endif
+ # Now scan the standard source code tree
+ foreach dr ($SOURCEDIRS)
+   set adr=$dr
+   if (! -d $adr) then
+     echo mods directory $adr not found.; exit 1
+   endif
+   echo Adding mods dir: $adr
+ end
+ if (! $?PACKAGES) then
+   set PACKAGES=()
+   foreach pkg (`cd $ROOTDIR/pkg; find . -type d | grep -v CVS | sed 's:\./::' | grep -v "\." | sort`)
+    if (-d $ROOTDIR/pkg/$pkg) set PACKAGES=($PACKAGES $pkg)
+   end
+ endif
+ foreach dr ($PACKAGES)
+   set enable
+   foreach p ($DISABLE)
+    if ($p != 'all' & ! -d $ROOTDIR/pkg/$p) then
+      echo Specified package \"$p\" does not exist.
+      exit 1
+    endif
+    if ($dr == $p) unset enable
+    if ($p == 'all') unset enable
+ #  The following allows entire trees to be disabled
+    if ($dr:h == $p) unset enable
+    if ($dr:h:h == $p) unset enable
+    if ($dr:h:h:h == $p) unset enable
+    if ($dr:h:h:h:h == $p) unset enable
+   end
+   foreach p ($ENABLE)
+    if ($dr == $p) set enable
+   end
+   if ($?enable) then
+     set adr=$ROOTDIR/pkg/$dr
+     if (! -d $adr) then
+       echo Source directory $adr not found.; exit 1
+     endif
+     echo Adding pkg dir: $adr
+     set SOURCEDIRS = ($SOURCEDIRS $adr)
+     set INCLUDEDIRS = ($INCLUDEDIRS $adr)
+   else
+     echo "                                      *" Package \"$dr\" NOT enabled.
+   endif
+ end
+ if (! $?STANDARDDIRS) set STANDARDDIRS=(eesupp model)
+ foreach dr ($STANDARDDIRS)
+   set adr=$ROOTDIR/$dr/src
+   if (! -d $adr) then
+     echo Source directory $adr not found.; exit 1
+   endif
+   echo Adding src dir: $adr
+   set SOURCEDIRS = ($SOURCEDIRS $adr)
+   set idr = `echo $adr | sed 's/src/inc/'`
+   set INCLUDEDIRS = ($INCLUDEDIRS $idr)
+ end
  # This is the generic configuration.
  # Platform specific options are chosen below
- set LN         = ( 'ln -sf' )
+ set LN         = ( 'ln -s' )
  set CPP        = ( '/lib/cpp -P' )
  set KPP        = (  )
  set FC         = ( 'f77' )
-Line 91 
 endif
+Line 294 
 endif
  # Platform specific options
  switch ($platform$USEMPI)
-   case alpha:
+   case OSF1+mpi:
-   case alpha+mpi:
+     echo "Configuring for DEC Alpha with MPI"
+     set LIBS       = ( '-lfmpi -lmpi -lkmp_osfp10 -pthread' )
+   case OSF1:
      echo "Configuring for DEC Alpha"
      set CPP        = ( '/usr/bin/cpp -P' )
-     set DEFINES    = ( ${DEFINES}  '-DTARGET_DEC' )
+     set DEFINES    = ( ${DEFINES}  '-DTARGET_DEC -DWORDLENGTH=1' )
-     set KPP        = ( 'kapf' )
+     set KPP        = ( )
-     set KPPFILES   = ( 'main.F' )
+     set KPPFILES   = ( )
-     set KFLAGS1    = ( '-scan=132 -noconc -cmp=' )
+     set KFLAGS1    = ( )
      set FC         = ( 'f77' )
-     set FFLAGS     = ( '-convert big_endian -r8 -extend_source -u -automatic -call_shared -notransform_loops -align dcommons' )
+     set FFLAGS     = ( '-convert big_endian -r8 -extend_source -automatic -call_shared -notransform_loops -align dcommons' )
      set FOPTIM     = ( '-O5 -fast -tune host -inline all' )
      set NOOPTFLAGS = ( '-O0' )
-     set LIBS       = ( '-lfmpi -lmpi -lkmp_osfp10 -pthread' )
+     set NOOPTFILES = ( 'barrier.F different_multiple.F external_fields_load.F')
-     set NOOPTFILES = ( 'barrier.F different_multiple.F load_external_fields.F')
      set RMFILES    = ( '*.p.out' )
      breaksw
-   case mips+mpi:
+   case IRIX64+mpi:
      echo "Configuring for SGI Mips with MPI"
-     set DEFINES    = ( ${DEFINES} '-DTARGET_SGI' )
+     set DEFINES    = ( ${DEFINES} '-DTARGET_SGI -DWORDLENGTH=4' )
      set INCLUDES   = ( '-I/usr/local/mpi/include' )
      set FC         = ( 'mpif77' )
      set LINK       = ( 'mpif77' )
-     set FFLAGS     = ( '-extend_source -bytereclen -r10000' )
+     set FFLAGS     = ( '-extend_source -bytereclen -r10000 -mips4' )
      set FOPTIM     = ( '-O3' )
      set RMFILES    = ( 'rii_files' )
      breaksw
-   case mips:
+   case IRIX64:
      echo "Configuring for SGI Mips"
-     set DEFINES    = ( ${DEFINES} '-DTARGET_SGI' )
+     set DEFINES    = ( ${DEFINES} '-DTARGET_SGI -DWORDLENGTH=4' )
      set INCLUDES   = ( '-I/usr/local/mpi/include' )
-     set FFLAGS     = ( '-extend_source -mp -mpio -bytereclen -r10000 -mips4' )
+     set FFLAGS     = ( '-extend_source -mp -mpio -bytereclen -r10000 -mips4 -r8 -static' )
+     set FOPTIM     = ( '-O3' )
+ #   set NOOPTFLAGS = ( '-O0' )
+ #   set NOOPTFILES = ( 'barrier.F different_multiple.F ' \
+ #                      'external_fields_load.F' )
+     set RMFILES    = ( 'rii_files' )
+     breaksw
+   case o2:
+   case IRIX:
+     echo "Configuring for SGI O2 running IRIX 6.5"
+     set DEFINES    = ( ${DEFINES} '-DTARGET_SGI -DWORDLENGTH=4' )
+     set FFLAGS     = ( '-extend_source -bytereclen -r10000 -mips4' )
      set FOPTIM     = ( '-O2' )
      set NOOPTFLAGS = ( '-O0' )
-     set NOOPTFILES = ( 'barrier.F different_multiple.F ' \
-                        'load_external_fields.F' )
-     set RMFILES    = ( 'rii_files' )
      breaksw
-   case sparc:
+   case o2+mpi:
-     set LN         = ( '/usr/bin/ln -fs' )
+   case IRIX+mpi:
+     echo "Configuring for SGI O2 running IRIX 6.5 with MPI"
+     set DEFINES    = ( ${DEFINES} '-DTARGET_SGI -DWORDLENGTH=4' )
+     set FFLAGS     = ( '-extend_source -bytereclen -r10000 -mips4' )
+     set FOPTIM     = ( '-O2' )
+     set NOOPTFILES = ( 'barrier.F different_multiple.F external_fields_load.F' )
+     set NOOPTFLAGS = ( '-O0' )
+     set LIBS       = ( '-lmpi' )
+     breaksw
+   case o2k+mpi:
+     echo "Configuring for SGI Origin2000 running IRIX 6.5"
+     set DEFINES    = ( ${DEFINES} '-DTARGET_SGI -DWORDLENGTH=4' )
+     set INCLUDES   = ( '-I/usr/include' )
+     set FFLAGS     = ( '-n32 -extend_source -bytereclen' )
+     set FOPTIM     = ( '-O2' )
+     set NOOPTFILES = ( 'calc_mom_rhs.F' )
+     set NOOPTFLAGS = ( '-O1' )
+     set LIBS       = ( '-lmpi -lscs' )
+     breaksw
+   case onyx:
+   case onyx+mpi:
+     echo "Configuring for SGI ONYX running IRIX64"
+     set DEFINES    = ( ${DEFINES} '-DTARGET_SGI -DWORDLENGTH=4' )
+     set FFLAGS     = ( '-extend_source -bytereclen -r10000 -64' )
+     set FOPTIM     = ( '-O2' )
+     set NOOPTFLAGS = ( '-O0' )
+     set NOOPTFILES = ( 'barrier.F different_multiple.F external_fields_load.F' )
+     set LIBS       = ( '-lmpi' )
+     breaksw
+   case SunOS:
+     set LN         = ( '/usr/bin/ln -s' )
+     set CPP        = ( '/usr/ccs/lib/cpp -P' )
+     set DEFINES    = ( ${DEFINES} '-DTARGET_SUN -DWORDLENGTH=4' )
+     set FFLAGS     = ( '-stackvar -explicitpar -vpara -e -u -noautopar')
+     set FOPTIM     = ( '-fast -O3' )
+     set NOOPTFLAGS = ( '-O0' )
+     set NOOPTFILES = ( 'barrier.F different_multiple.F external_fields_load.F ini_vertical_grid.F ini_spherical_polar_grid.F ini_cori.F')
+     breaksw
+   case SunOS+mpi:
+     set LN         = ( '/usr/bin/ln -s' )
      set CPP        = ( '/usr/ccs/lib/cpp -P' )
-     set DEFINES    = ( ${DEFINES} '-DTARGET_SUN' )
+     set DEFINES    = ( ${DEFINES} '-DTARGET_SUN -DWORDLENGTH=4' )
      set INCLUDES   = ( '-I/usr/local/mpi/include' )
      set FFLAGS     = ( '-stackvar -explicitpar -vpara -e -u -noautopar')
-     set FOPTIM     = ( '-O5' )
+     set FOPTIM     = ( '-fast -O3' )
      set NOOPTFLAGS = ( '-O0' )
      set LIBS       = ( '-L/usr/local/mpi/lib/solaris/ch_shmem -lmpi -lthread' \
-                        '-lsocket -lnsl -fast' )
+                        '-lsocket -lnsl' )
-     set NOOPTFILES = ( 'barrier.F different_multiple.F load_external_fields.F')
+     set NOOPTFILES = ( 'barrier.F different_multiple.F external_fields_load.F ini_vertical_grid.F ini_spherical_polar_grid.F ini_cori.F')
      breaksw
-   case onyx:
+   case IRIX32:
-   case onyx+mpi:
      echo "Configuring for SGI ONYX running IRIX64"
-     set DEFINES    = ( ${DEFINES} '-DTARGET_SGI' )
+     set DEFINES    = ( ${DEFINES} '-DTARGET_SGI -DWORDLENGTH=4' )
      set INCLUDES   = ( '-I/usr/include' )
      set FFLAGS     = ( '-extend_source -bytereclen -r10000 -64' )
      set FOPTIM     = ( '-O2' )
      set NOOPTFLAGS = ( '-O0' )
      set NOOPTFILES = ( 'barrier.F different_multiple.F ' \
-                        'load_external_fields.F' )
+                        'external_fields_load.F' )
      set LIBS       = ( '-lmpi' )
      breaksw
-   case exemplar:
+   case HP-UX+mpi:
-   case exemplar+mpi:
-     echo "Configuring for HP Exemplar"
-     set CPP        = ( '/usr/ccs/lbin/cpp -P' )
-     set DEFINES    = ( ${DEFINES}  '-DTARGET_HP' )
-     set INCLUDES   = ( '-I/opt/mpi/include' )
      set FC         = ( 'mpif77' )
      set LINK       = ( 'mpif77' )
+     set INCLUDES   = ( '-I/opt/mpi/include' )
+   case HP-UX:
+     echo "Configuring for HP Exemplar"
+     set CPP        = ( '/usr/ccs/lbin/cpp -P' )
+     set DEFINES    = ( ${DEFINES}  '-DTARGET_HP -DWORDLENGTH=4' )
      set FFLAGS     = ( '+es +U77 +Onoautopar +Oexemplar_model' \
                         '+Okernel_threads' )
      set FOPTIM     = ( '+O2' )
-     set NOOPTFLAGS = ( '-O0' )
+     set NOOPTFLAGS = ( '+O0' )
      set NOOPTFILES = ( 'barrier.F different_multiple.F' \
-                        'load_external_fields.F' )
+                        'external_fields_load.F' )
+     breaksw
+   case Linux+mpi:
+     set LIBS       = ( '-L/usr/local/lib/LINUX/ch_p4/ -lfmpich -lmpich' )
+     set INCLUDES   = ( '-I/usr/local/include' )
+   case Linux:
+     set LN         = ( '/bin/ln -s' )
+     set CPP        = ( '/lib/cpp  -traditional -P' )
+     set DEFINES    = ( ${DEFINES} '-D_BYTESWAPIO -DWORDLENGTH=4' )
+     set FC         = ( 'g77' )
+     set FFLAGS     = ( '-Wimplicit -Wunused -Wuninitialized' )
+     set FOPTIM     = ( '-O3 -malign-double -funroll-loops ' )
+     set LINK       = ( 'g77' )
+     breaksw
+   case Linux+pgi+mpi:
+     if ($?include_jam_libs) then
+      set INCLUDES   = ( '-I/usr/local/mpich-1.2.1/pgi_fortran_binding/include' )
+      set LIBS       = ( '-L/usr/local/mpich-1.2.1/pgi_fortran_binding/lib/ -lfmpich -lmpich' )
+     else
+      set INCLUDES   = ( '-I/usr/local/include' )
+      set LIBS       = ( '-L/usr/local/lib/LINUX/ch_p4/ -lfmpich -lmpich' )
+     endif
+   case Linux+pgi:
+     set LN         = ( '/bin/ln -s' )
+     set CPP        = ( '/lib/cpp -traditional -P' )
+     set DEFINES    = ( ${DEFINES} '-DWORDLENGTH=4' )
+     set FC         = ( 'pgf77' )
+     set FFLAGS     = ( '-byteswapio -r8 -Mnodclchk -Mextend' )
+     set FOPTIM     = ( '-tp p6 -v -O2 -Munroll -Mvect=cachesize:512000,transform -Kieee' )
+     set LINK       = ( 'pgf77' )
+     breaksw
+   case T3E:
+   case sn6312:
+     set CPP        = ( '/opt/ctl/bin/cpp -P')
+     set DEFINES    = ( ${DEFINES} '-DTARGET_T3E -DWORDLENGTH=4' )
+     set FC         = ( 'f90' )
+     set LINK       = ( 'f90' )
+     set FFLAGS     = ( '-O 2,fusion' )
+     breaksw
+   case T90:
+   case sn7113:
+     set FC         = ( 'f90' )
+     set LINK       = ( 'f90' )
+     set LN         = ( '/bin/ln -s' )
+     set CPP        = ( '/opt/ctl/bin/cpp -N -P' )
+     set DEFINES    = ( ${DEFINES} '-DTARGET_CRAY_VECTOR -DWORDLENGTH=4' )
+     set FFLAGS     = ( '-m3 -Rabc -N 132')
+     set FOPTIM     = ( '-O0' )
+     set NOOPTFLAGS = ( '-O0' )
+     set NOOPTFILES = ( 'barrier.F different_multiple.F external_fields_load.F')
+     breaksw
+   case SV1:
+   case sn3002:
+     set FC         = ( 'f90' )
+     set LINK       = ( 'f90' )
+     set LN         = ( '/bin/ln -s' )
+     set CPP        = ( '/opt/ctl/bin/cpp -N -P' )
+     set DEFINES    = ( ${DEFINES} '-DTARGET_CRAY_VECTOR -DWORDLENGTH=4' )
+     set FFLAGS     = ( '-m3 -Rabc -ei -eI -s cf77types -N 132')
+     set FOPTIM     = ( '-O0' )
+     set NOOPTFLAGS = ( '-O0' )
+     set NOOPTFILES = ( 'barrier.F different_multiple.F external_fields_load.F')
      breaksw
    default:
      echo "Error: platform not recognized: uname -p = " $platform$USEMPI
-Line 180 
 endsw
+Line 491 
 endsw
  ##                                                                           ##
  ###############################################################################
- # Create list of files
- set flist = `ls -1 ${SOURCEDIRS} | grep '.*\.F'`
- if ( $#flist ) then
-  echo -n "SRCFILES = " > srclist.inc
-  echo -n "F77FILES = " > f77list.inc
-  echo -n "OBJFILES = " > objlist.inc
-  foreach ff ( ${flist} )
-   set fname = ( ${ff:t}       )
-   echo ' \' >> srclist.inc
-   echo -n "           " ${fname:r}.F >> srclist.inc
-   echo ' \' >> f77list.inc
-   echo -n "           " ${fname:r}.f >> f77list.inc
-   echo ' \' >> objlist.inc
-   echo -n "           " ${fname:r}.o >> objlist.inc
-  end
-  echo " " >> srclist.inc
-  echo " " >> f77list.inc
-  echo " " >> objlist.inc
- else
-  echo No source files found...\!
-  exit
- endif
  # Convert lists of directories into command-line options
  foreach inc ($INCLUDEDIRS)
   set INCLUDES = ($INCLUDES -I$inc)
  end
- set SRCSTARS = ( )
+ # Search for source code
+ rm -rf .links.tmp;mkdir .links.tmp
+ echo "# This section creates symbolic links" > srclinks.tmp
+ echo "" >> srclinks.tmp
+ echo -n 'SRCFILES = ' > srclist.inc
+ echo -n 'CSRCFILES = ' > csrclist.inc
+ #echo -n 'HEADERFILES = ' > hlist.inc
  foreach dr ($SOURCEDIRS)
-  set SRCSTARS = ("${SRCSTARS}" $dr/\*.F)
+  set deplist=( )
+  foreach srcfile (`cd $dr; ls *.[hcF]`)
+   if (! -r .links.tmp/$srcfile) then
+    if (-f $dr/$srcfile) then
+     switch ($srcfile:e)
+     case F:
+      touch .links.tmp/$srcfile
+      set deplist=($deplist $srcfile)
+      echo    ' \'                   >> srclist.inc
+      echo -n "           " $srcfile >> srclist.inc
+      breaksw
+     case c:
+      touch .links.tmp/$srcfile
+      set deplist=($deplist $srcfile)
+      echo    ' \'                   >> csrclist.inc
+      echo -n "           " $srcfile >> csrclist.inc
+      breaksw
+     case h:
+ #     touch .links.tmp/$srcfile
+ #     set deplist=($deplist $srcfile)
+ #     echo    ' \'                   >> hlist.inc
+ #     echo -n "           " $srcfile >> hlist.inc
+      breaksw
+     endsw
+    endif
+   endif
+  end
+  if ($#deplist != 0) then
+   echo "# These files are linked from $dr" >> srclinks.tmp
+   echo $deplist':' >> srclinks.tmp
+   echo '        $(LN) '$dr'/$@ $@' >> srclinks.tmp
+  endif
  end
+ rm -rf .links.tmp
+ echo "" >> srclist.inc
+ echo "" >> csrclist.inc
+ #echo "" >> hlist.inc
  set THISHOSTNAME = ( `hostname` )
  set THISCWD = ( `pwd` )
  set THISDATE = ( `date` )
+ if (-r $mfile) mv -f $mfile $mfile.bak
  ###########################################
  ## This is the template for the makefile ##
  ###########################################
  echo Creating makefile: $mfile
  echo "# Multithreaded + multi-processing makefile for $mach" > ${mfile}
- echo "# This makefile was generated automatically pn" >> ${mfile}
+ echo "# This makefile was generated automatically on" >> ${mfile}
  echo "#    $THISDATE" >> ${mfile}
  echo "# by the command:" >> ${mfile}
  echo "#    ${0} $argv" >> ${mfile}
-Line 246 
 cat >> ${mfile} <<EOF
+Line 577 
 cat >> ${mfile} <<EOF
  # LINK         : Command for link editor program
  # LIBS         : Library flags /or/ additional optimization/debugging flags
- BUILDDIR   = ${BUILDDIR}
+ ROOTDIR     = ${ROOTDIR}
- SOURCEDIRS = ${SOURCEDIRS}
+ BUILDDIR    = ${BUILDDIR}
+ SOURCEDIRS  = ${SOURCEDIRS}
  INCLUDEDIRS = ${INCLUDEDIRS}
- EXEDIR     = ${EXEDIR}
+ EXEDIR      = ${EXEDIR}
- EXECUTABLE = \$(EXEDIR)${EXECUTABLE}
+ EXECUTABLE  = \$(EXEDIR)/${EXECUTABLE}
+ TOOLSDIR    = ${TOOLSDIR}
+ EOF
+ # JAM libraries on Hyades
+ if ($?include_jam_libs) then
+ cat >> ${mfile} <<EOF
+ # extra stuff for Hyades ............................................
+ HYADES_DIR = /u/u0/cnh/jam-lib/software
+ HYADES_DIR = /u/u0/cnh/jam-lib-twoproc
+ HYADES_DIR = /usr/local/jamlib/current/dual_proc
+ WORK_DIR   = \$(HYADES_DIR)
+ DEPOSIT_DIR = linux_bin
+ STARTXOBJDIR = startx_util/\$(DEPOSIT_DIR)
+ STARTXOBJ = \$(WORK_DIR)/startx_util/\$(DEPOSIT_DIR)/startx_timer.o \
+             \$(WORK_DIR)/startx_util/\$(DEPOSIT_DIR)/startx_util.o \
+             \$(WORK_DIR)/startx_util/\$(DEPOSIT_DIR)/client.o \
+             \$(WORK_DIR)/startx_util/\$(DEPOSIT_DIR)/csutil.o
+ JAMOBJDIR  = jam/\$(DEPOSIT_DIR)
+ JAMOBJ     = \$(WORK_DIR)/jam/\$(DEPOSIT_DIR)/jam_init.o \
+              \$(WORK_DIR)/jam/\$(DEPOSIT_DIR)/jam_kernel.o \
+              \$(WORK_DIR)/jam/\$(DEPOSIT_DIR)/jam_malloc.o \
+              \$(WORK_DIR)/jam/\$(DEPOSIT_DIR)/jam_vmalloc.o \
+              \$(WORK_DIR)/jam/\$(DEPOSIT_DIR)/jam_mutex.o
+ JAMCOBJDIR = jam_collective/\$(DEPOSIT_DIR)
+ JAMCOBJ    = \$(WORK_DIR)/jam_collective/\$(DEPOSIT_DIR)/jam_collective.o
+ XLIBS      = \$(STARTXOBJ) \$(JAMOBJ) \$(JAMCOBJ)
+ # ..................................................................
+ EOF
+ endif
+ cat >> ${mfile} <<EOF
  # Unix ln (link)
  LN = ${LN}
  # C preprocessor
- CPP = ${CPP}
+ CPP = cat \$< | \$(TOOLSDIR)/set64bitConst.sh | ${CPP}
  # Special preprocessor (KAP on DECs, FPP on Crays)
  KPP = ${KPP}
  # Fortran compiler
-Line 277 
 FOPTIM = ${FOPTIM}
+Line 648 
 FOPTIM = ${FOPTIM}
  NOOPTFILES = ${NOOPTFILES}
  NOOPTFLAGS = ${NOOPTFLAGS}
  # Flags and libraries needed for linking
- LIBS = ${LIBS}
+ LIBS = ${LIBS} \$(XLIBS)
  EOF
- cat srclist.inc >> ${mfile}
+ cat srclist.inc  >> ${mfile}
- cat f77list.inc >> ${mfile}
+ cat csrclist.inc >> ${mfile}
- cat objlist.inc >> ${mfile}
+ echo 'F77FILES =  $(SRCFILES:.F=.f)'                    >> ${mfile}
- rm -f srclist.inc f77list.inc objlist.inc
+ echo 'OBJFILES =  $(SRCFILES:.F=.o) $(CSRCFILES:.c=.o)' >> ${mfile}
+ rm -f srclist.inc csrclist.inc flist.tmp clist.tmp
  cat >> ${mfile} <<EOF
  .SUFFIXES:
- .SUFFIXES: .o .f .p .F
+ .SUFFIXES: .o .f .p .F .c
  all: \$(EXECUTABLE)
  \$(EXECUTABLE): \$(OBJFILES)
          \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) \$(LIBS)
- links:
-         @-\$(LN) $SRCSTARS .
  depend:
          @make links
          makedepend -o .f \$(INCLUDES) \$(SRCFILES)
+ links: \$(SRCFILES)
+ small_f: \$(F77FILES)
  clean:
          -rm -rf *.o *.f *.p ${RMFILES}
+ Clean:
+         @make clean
+         @make cleanlinks
+         -rm -f Makefile.bak
+ CLEAN:
+         @make Clean
+         -find \$(EXEDIR) -name "*.meta" -exec rm {} \;
+         -find \$(EXEDIR) -name "*.data" -exec rm {} \;
+         -rm -f \$(EXECUTABLE)
+ makefile:
+         ${0} $argv
+ cleanlinks:
+         -find . -type l -exec rm {} \;
  # The normal chain of rules is (  .F - .f - .o  )
  .F.f:
-         \$(CPP) \$(DEFINES) \$(INCLUDES) \$< > \$@
+         \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@
  .f.o:
          \$(FC) \$(FFLAGS) \$(FOPTIM) -c \$<
  # Special exceptions that use the ( .F - .p - .f - .o ) rule-chain
  .F.p:
-         \$(CPP) \$(DEFINES) \$(INCLUDES) \$< > \$@
+         \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@
  .p.f:
          \$(KPP) \$(KFLAGS1)\$@ \$(KFLAGS2) \$<
  EOF
-Line 325 
 foreach sf ($NOOPTFILES)
+Line 715 
 foreach sf ($NOOPTFILES)
   echo "${fname:r}.o: ${fname:r}.f" >> ${mfile}
   echo ' $(FC) $(FFLAGS) $(NOOPTFLAGS) -c $<' >> ${mfile}
  end
- echo >> ${mfile}
+ echo "" >> ${mfile}
+ # Add rules for links
+ cat srclinks.tmp >> ${mfile}
+ rm -f srclinks.tmp
+ echo "" >> ${mfile}
  echo "# DO NOT DELETE" >> ${mfile}
  exit

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-Removed from v.1.4
+Added in v.1.39

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