--- MITgcm/tools/genmake	1999/05/07 18:12:29	1.11
+++ MITgcm/tools/genmake	2000/06/21 19:57:55	1.17
@@ -1,6 +1,6 @@
 #!/bin/csh -f
 #
-# $Header: /home/ubuntu/mnt/e9_copy/MITgcm/tools/Attic/genmake,v 1.11 1999/05/07 18:12:29 adcroft Exp $
+# $Header: /home/ubuntu/mnt/e9_copy/MITgcm/tools/Attic/genmake,v 1.17 2000/06/21 19:57:55 adcroft Exp $
 #
 # Makefile generator for MITgcm UV codes
 #   created by cnh 03/98
@@ -30,6 +30,10 @@
    echo "Enabling MPI options"
    set USEMPI
    breaksw
+ case -jam:
+   set include_jam_libs
+   echo "Including paths to JAM libraries"
+   breaksw
  case -help:
    echo "usage: $0 [-help] [-makefile[=...]] [-platform=...] [-mpi]"
    exit
@@ -56,8 +60,8 @@
 #   copy everything in ../eesupp/src, ../model/src,
 #   ../eesupp/inc and ../model/inc into a directory and then
 #   edit the paths below to ./
-set SOURCEDIRS  = ( ../eesupp/src/ ../model/src/ ../diags/src/)
-set INCLUDEDIRS = ( ../eesupp/inc/ ../model/inc/ ../diags/inc/)
+set SOURCEDIRS  = ( ../eesupp/src/ ../model/src/ ../diags/src/ ../pkg/*/)
+set INCLUDEDIRS = ( ./ ../eesupp/inc/ ../model/inc/ ../diags/inc/ ../pkg/*/)
 set BUILDDIR    = ( ../bin/ )
 set EXEDIR      = ( ../exe/ )
 set EXECUTABLE  = ( mitgcmuv )
@@ -178,26 +182,40 @@
     breaksw
   case Linux+mpi:
     set LIBS       = ( '-L/usr/local/lib/LINUX/ch_p4/ -lfmpich -lmpich' )
+    set INCLUDES   = ( '-I/usr/local/include' )
   case Linux:
     set LN         = ( '/bin/ln -fs' )
-    set CPP        = ( '/usr/lib/gcc-lib/i386-redhat-linux/2.7.2.3/cpp  -traditional -P' )
+    set CPP        = ( '/lib/cpp  -traditional -P' )
     set DEFINES    = ( ${DEFINES} '-D_BYTESWAPIO -DWORDLENGTH=4' )
-    set INCLUDES   = ( '-I/usr/local/include' )
     set FC         = ( 'g77' )
-    set FFLAGS     = ( ' ' )
-    set FOPTIM     = ( '-O3 -funroll-loops ' )
+    set FFLAGS     = ( '-Wimplicit -Wunused -Wuninitialized' )
+    set FOPTIM     = ( '-O3 -malign-double -funroll-loops ' )
     set LINK       = ( 'g77' )
     breaksw
+  case Linux+pgi+mpi:
+    if ($?include_jam_libs) then
+     set INCLUDES   = ( '-I/usr/local//mpich-cnh-install/include' )
+     set LIBS       = ( '-L/usr/local/mpich-cnh-install/lib/LINUX/ch_p4/ -lfmpich -lmpich' )
+    else
+     set INCLUDES   = ( '-I/usr/local/include' )
+     set LIBS       = ( '-L/usr/local/lib/LINUX/ch_p4/ -lfmpich -lmpich' )
+    endif
   case Linux+pgi:
     set LN         = ( '/bin/ln -fs' )
-    set CPP        = ( '/usr/lib/gcc-lib/i386-redhat-linux/2.7.2.3/cpp -P' )
+    set CPP        = ( '/lib/cpp -traditional -P' )
     set DEFINES    = ( ${DEFINES} '-DWORDLENGTH=4' )
-    set INCLUDES   = ( '-I/usr/local/include' )
     set FC         = ( 'pgf77' )
     set FFLAGS     = ( '-byteswapio' )
     set FOPTIM     = ( '-tp p6 -v -O2 -Munroll -Mvect=cachesize:512000,transform -Kieee' )
     set LINK       = ( 'pgf77' )
-    set LIBS       = ( '-L/usr/local/lib/LINUX/ch_p4/ -lfmpich -lmpich -Kieee' )
+    breaksw
+  case T3E:
+  case sn6312:
+    set CPP        = ( '/opt/ctl/bin/cpp -P')
+    set DEFINES    = ( ${DEFINES} '-DTARGET_T3E -DWORDLENGTH=4' )
+    set FC         = ( 'f90' )
+    set LINK       = ( 'f90' )
+    set FFLAGS     = ( '-O 2,fusion' )
     breaksw
   default:
     echo "Error: platform not recognized: uname -p = " $platform$USEMPI
@@ -291,6 +309,43 @@
 EXEDIR     = ${EXEDIR}
 EXECUTABLE = \$(EXEDIR)${EXECUTABLE}
 
+EOF
+
+
+# JAM libraries on Hyades
+if ($?include_jam_libs) then
+cat >> ${mfile} <<EOF
+# extra stuff for Hyades ............................................
+HYADES_DIR = /u/u0/cnh/jam-lib/software
+HYADES_DIR = /u/u0/cnh/jam-lib-twoproc
+WORK_DIR   = \$(HYADES_DIR)
+DEPOSIT_DIR = linux_bin
+
+STARTXOBJDIR = startx_util/\$(DEPOSIT_DIR)
+STARTXOBJ = \$(WORK_DIR)/startx_util/\$(DEPOSIT_DIR)/startx_timer.o \
+            \$(WORK_DIR)/startx_util/\$(DEPOSIT_DIR)/startx_util.o \
+            \$(WORK_DIR)/startx_util/\$(DEPOSIT_DIR)/client.o \
+            \$(WORK_DIR)/startx_util/\$(DEPOSIT_DIR)/csutil.o
+
+JAMOBJDIR  = jam/\$(DEPOSIT_DIR)
+JAMOBJ     = \$(WORK_DIR)/jam/\$(DEPOSIT_DIR)/jam_init.o \
+             \$(WORK_DIR)/jam/\$(DEPOSIT_DIR)/jam_kernel.o \
+             \$(WORK_DIR)/jam/\$(DEPOSIT_DIR)/jam_malloc.o \
+             \$(WORK_DIR)/jam/\$(DEPOSIT_DIR)/jam_vmalloc.o \
+             \$(WORK_DIR)/jam/\$(DEPOSIT_DIR)/jam_mutex.o
+
+JAMCOBJDIR = jam_collective/\$(DEPOSIT_DIR)
+JAMCOBJ    = \$(WORK_DIR)/jam_collective/\$(DEPOSIT_DIR)/jam_collective.o
+
+XLIBS      = \$(STARTXOBJ) \$(JAMOBJ) \$(JAMCOBJ)
+
+# ..................................................................
+
+EOF
+endif
+
+
+cat >> ${mfile} <<EOF
 # Unix ln (link)
 LN = ${LN}
 # C preprocessor
@@ -316,7 +371,7 @@
 NOOPTFILES = ${NOOPTFILES}
 NOOPTFLAGS = ${NOOPTFLAGS}
 # Flags and libraries needed for linking
-LIBS = ${LIBS}
+LIBS = ${LIBS} \$(XLIBS)
 
 EOF
 
@@ -344,6 +399,11 @@
 	@make clean
 	-find . -type l -exec rm {} \;
 	-rm Makefile.bak
+CLEAN:
+	@make Clean
+	-find ../verification/ -name "*.meta" -exec rm {} \;
+	-find ../verification/ -name "*.data" -exec rm {} \;
+	-rm \$(EXECUTABLE)
 
 # The normal chain of rules is (  .F - .f - .o  )
 .F.f: