--- MITgcm/tools/genmake	1999/03/22 16:27:13	1.9
+++ MITgcm/tools/genmake	2000/11/13 16:40:02	1.20
@@ -1,6 +1,6 @@
 #!/bin/csh -f
 #
-# $Header: /home/ubuntu/mnt/e9_copy/MITgcm/tools/Attic/genmake,v 1.9 1999/03/22 16:27:13 adcroft Exp $
+# $Header: /home/ubuntu/mnt/e9_copy/MITgcm/tools/Attic/genmake,v 1.20 2000/11/13 16:40:02 heimbach Exp $
 #
 # Makefile generator for MITgcm UV codes
 #   created by cnh 03/98
@@ -30,6 +30,10 @@
    echo "Enabling MPI options"
    set USEMPI
    breaksw
+ case -jam:
+   set include_jam_libs
+   echo "Including paths to JAM libraries"
+   breaksw
  case -help:
    echo "usage: $0 [-help] [-makefile[=...]] [-platform=...] [-mpi]"
    exit
@@ -56,8 +60,8 @@
 #   copy everything in ../eesupp/src, ../model/src,
 #   ../eesupp/inc and ../model/inc into a directory and then
 #   edit the paths below to ./
-set SOURCEDIRS  = ( ../eesupp/src/ ../model/src/ ../diags/src/)
-set INCLUDEDIRS = ( ../eesupp/inc/ ../model/inc/ ../diags/inc/)
+set SOURCEDIRS  = ( ../eesupp/src/ ../model/src/ ../diags/src/ ../pkg/*/ )
+set INCLUDEDIRS = ( ./ ../eesupp/inc/ ../model/inc/ ../diags/inc/ ../pkg/*/ )
 set BUILDDIR    = ( ../bin/ )
 set EXEDIR      = ( ../exe/ )
 set EXECUTABLE  = ( mitgcmuv )
@@ -96,7 +100,7 @@
   case OSF1+mpi:
     echo "Configuring for DEC Alpha"
     set CPP        = ( '/usr/bin/cpp -P' )
-    set DEFINES    = ( ${DEFINES}  '-DTARGET_DEC' )
+    set DEFINES    = ( ${DEFINES}  '-DTARGET_DEC -DWORDLENGTH=1' )
     set KPP        = ( 'kapf' )
     set KPPFILES   = ( 'main.F' )
     set KFLAGS1    = ( '-scan=132 -noconc -cmp=' )
@@ -105,97 +109,175 @@
     set FOPTIM     = ( '-O5 -fast -tune host -inline all' )
     set NOOPTFLAGS = ( '-O0' )
     set LIBS       = ( '-lfmpi -lmpi -lkmp_osfp10 -pthread' )
-    set NOOPTFILES = ( 'barrier.F different_multiple.F load_external_fields.F')
+    set NOOPTFILES = ( 'barrier.F different_multiple.F external_fields_load.F')
     set RMFILES    = ( '*.p.out' )
     breaksw
   case IRIX64+mpi:
     echo "Configuring for SGI Mips with MPI"
-    set DEFINES    = ( ${DEFINES} '-DTARGET_SGI' )
+    set DEFINES    = ( ${DEFINES} '-DTARGET_SGI -DWORDLENGTH=4' )
     set INCLUDES   = ( '-I/usr/local/mpi/include' )
     set FC         = ( 'mpif77' )
     set LINK       = ( 'mpif77' )
-    set FFLAGS     = ( '-extend_source -bytereclen -r10000' )
+    set FFLAGS     = ( '-extend_source -bytereclen -r10000 -mips4' )
     set FOPTIM     = ( '-O3' )
     set RMFILES    = ( 'rii_files' )
     breaksw
   case IRIX64:
     echo "Configuring for SGI Mips"
-    set DEFINES    = ( ${DEFINES} '-DTARGET_SGI' )
+    set DEFINES    = ( ${DEFINES} '-DTARGET_SGI -DWORDLENGTH=4' )
     set INCLUDES   = ( '-I/usr/local/mpi/include' )
     set FFLAGS     = ( '-extend_source -mp -mpio -bytereclen -r10000 -mips4' )
+    set FOPTIM     = ( '-O3' )
+#   set NOOPTFLAGS = ( '-O0' )
+#   set NOOPTFILES = ( 'barrier.F different_multiple.F ' \
+#                      'external_fields_load.F' )
+    set RMFILES    = ( 'rii_files' )
+    breaksw
+  case o2:
+  case IRIX:
+    echo "Configuring for SGI O2 running IRIX 6.5"
+    set DEFINES    = ( ${DEFINES} '-DTARGET_SGI -DWORDLENGTH=4' )
+    set FFLAGS     = ( '-extend_source -bytereclen -r10000 -mips4' )
     set FOPTIM     = ( '-O2' )
     set NOOPTFLAGS = ( '-O0' )
-    set NOOPTFILES = ( 'barrier.F different_multiple.F ' \
-                       'load_external_fields.F' )
-    set RMFILES    = ( 'rii_files' )
+    breaksw
+  case o2+mpi:
+  case IRIX+mpi:
+    echo "Configuring for SGI O2 running IRIX 6.5 with MPI"
+    set DEFINES    = ( ${DEFINES} '-DTARGET_SGI -DWORDLENGTH=4' )
+    set FFLAGS     = ( '-extend_source -bytereclen -r10000 -mips4' )
+    set FOPTIM     = ( '-O2' )
+    set NOOPTFILES = ( 'barrier.F different_multiple.F external_fields_load.F' )
+    set NOOPTFLAGS = ( '-O0' )
+    set LIBS       = ( '-lmpi' )
+    breaksw
+  case o2k+mpi:
+    echo "Configuring for SGI Origin2000 running IRIX 6.5"
+    set DEFINES    = ( ${DEFINES} '-DTARGET_SGI -DWORDLENGTH=4' )
+    set INCLUDES   = ( '-I/usr/include' )
+    set FFLAGS     = ( '-n32 -extend_source -bytereclen' )
+    set FOPTIM     = ( '-O2' )
+    set NOOPTFILES = ( 'calc_mom_rhs.F' )
+    set NOOPTFLAGS = ( '-O1' )
+    set LIBS       = ( '-lmpi -lscs' )
+    breaksw
+  case onyx:
+  case onyx+mpi:
+    echo "Configuring for SGI ONYX running IRIX64"
+    set DEFINES    = ( ${DEFINES} '-DTARGET_SGI -DWORDLENGTH=4' )
+    set FFLAGS     = ( '-extend_source -bytereclen -r10000 -64' )
+    set FOPTIM     = ( '-O2' )
+    set NOOPTFLAGS = ( '-O0' )
+    set NOOPTFILES = ( 'barrier.F different_multiple.F external_fields_load.F' )
+    set LIBS       = ( '-lmpi' )
     breaksw
   case SunOS:
     set LN         = ( '/usr/bin/ln -fs' )
     set CPP        = ( '/usr/ccs/lib/cpp -P' )
-    set DEFINES    = ( ${DEFINES} '-DTARGET_SUN' )
+    set DEFINES    = ( ${DEFINES} '-DTARGET_SUN -DWORDLENGTH=4' )
     set FFLAGS     = ( '-stackvar -explicitpar -vpara -e -u -noautopar')
-    set FOPTIM     = ( '-O5 -fast' )
+    set FOPTIM     = ( '-fast -O3' )
     set NOOPTFLAGS = ( '-O0' )
-    set NOOPTFILES = ( 'barrier.F different_multiple.F load_external_fields.F')
+    set NOOPTFILES = ( 'barrier.F different_multiple.F external_fields_load.F ini_vertical_grid.F')
     breaksw
   case SunOS+mpi:
     set LN         = ( '/usr/bin/ln -fs' )
     set CPP        = ( '/usr/ccs/lib/cpp -P' )
-    set DEFINES    = ( ${DEFINES} '-DTARGET_SUN' )
+    set DEFINES    = ( ${DEFINES} '-DTARGET_SUN -DWORDLENGTH=4' )
     set INCLUDES   = ( '-I/usr/local/mpi/include' )
     set FFLAGS     = ( '-stackvar -explicitpar -vpara -e -u -noautopar')
-    set FOPTIM     = ( '-O5 -fast' )
+    set FOPTIM     = ( '-fast -O3' )
     set NOOPTFLAGS = ( '-O0' )
     set LIBS       = ( '-L/usr/local/mpi/lib/solaris/ch_shmem -lmpi -lthread' \
                        '-lsocket -lnsl' )
-    set NOOPTFILES = ( 'barrier.F different_multiple.F load_external_fields.F')
+    set NOOPTFILES = ( 'barrier.F different_multiple.F external_fields_load.F ini_vertical_grid.F')
     breaksw
   case IRIX32:
     echo "Configuring for SGI ONYX running IRIX64"
-    set DEFINES    = ( ${DEFINES} '-DTARGET_SGI' )
+    set DEFINES    = ( ${DEFINES} '-DTARGET_SGI -DWORDLENGTH=4' )
     set INCLUDES   = ( '-I/usr/include' )
     set FFLAGS     = ( '-extend_source -bytereclen -r10000 -64' )
     set FOPTIM     = ( '-O2' )
     set NOOPTFLAGS = ( '-O0' )
     set NOOPTFILES = ( 'barrier.F different_multiple.F ' \
-                       'load_external_fields.F' )
+                       'external_fields_load.F' )
     set LIBS       = ( '-lmpi' )
     breaksw
-  case HP-UX:
   case HP-UX+mpi:
-    echo "Configuring for HP Exemplar"
-    set CPP        = ( '/usr/ccs/lbin/cpp -P' )
-    set DEFINES    = ( ${DEFINES}  '-DTARGET_HP' )
-    set INCLUDES   = ( '-I/opt/mpi/include' )
     set FC         = ( 'mpif77' )
     set LINK       = ( 'mpif77' )
+    set INCLUDES   = ( '-I/opt/mpi/include' )
+  case HP-UX:
+    echo "Configuring for HP Exemplar"
+    set CPP        = ( '/usr/ccs/lbin/cpp -P' )
+    set DEFINES    = ( ${DEFINES}  '-DTARGET_HP -DWORDLENGTH=4' )
     set FFLAGS     = ( '+es +U77 +Onoautopar +Oexemplar_model' \
                        '+Okernel_threads' )
     set FOPTIM     = ( '+O2' )
     set NOOPTFLAGS = ( '+O0' )
     set NOOPTFILES = ( 'barrier.F different_multiple.F' \
-                       'load_external_fields.F' )
+                       'external_fields_load.F' )
     breaksw
   case Linux+mpi:
     set LIBS       = ( '-L/usr/local/lib/LINUX/ch_p4/ -lfmpich -lmpich' )
+    set INCLUDES   = ( '-I/usr/local/include' )
   case Linux:
     set LN         = ( '/bin/ln -fs' )
-    set CPP        = ( '/usr/lib/gcc-lib/i386-redhat-linux/2.7.2.3/cpp  -traditional -P' )
-    set INCLUDES   = ( '-I/usr/local/include' )
+    set CPP        = ( '/lib/cpp  -traditional -P' )
+    set DEFINES    = ( ${DEFINES} '-D_BYTESWAPIO -DWORDLENGTH=4' )
     set FC         = ( 'g77' )
-    set FFLAGS     = ( ' ' )
-    set FOPTIM     = ( '-O3 -funroll-loops ' )
+    set FFLAGS     = ( '-Wimplicit -Wunused -Wuninitialized' )
+    set FOPTIM     = ( '-O3 -malign-double -funroll-loops ' )
     set LINK       = ( 'g77' )
     breaksw
+  case Linux+pgi+mpi:
+    if ($?include_jam_libs) then
+     set INCLUDES   = ( '-I/usr/local//mpich-cnh-install/include' )
+     set LIBS       = ( '-L/usr/local/mpich-cnh-install/lib/LINUX/ch_p4/ -lfmpich -lmpich' )
+    else
+     set INCLUDES   = ( '-I/usr/local/include' )
+     set LIBS       = ( '-L/usr/local/lib/LINUX/ch_p4/ -lfmpich -lmpich' )
+    endif
   case Linux+pgi:
     set LN         = ( '/bin/ln -fs' )
-    set CPP        = ( '/usr/lib/gcc-lib/i386-redhat-linux/2.7.2.3/cpp -P' )
-    set INCLUDES   = ( '-I/usr/local/include' )
+    set CPP        = ( '/lib/cpp -traditional -P' )
+    set DEFINES    = ( ${DEFINES} '-DWORDLENGTH=4' )
     set FC         = ( 'pgf77' )
     set FFLAGS     = ( '-byteswapio' )
     set FOPTIM     = ( '-tp p6 -v -O2 -Munroll -Mvect=cachesize:512000,transform -Kieee' )
     set LINK       = ( 'pgf77' )
-    set LIBS       = ( '-L/usr/local/lib/LINUX/ch_p4/ -lfmpich -lmpich -Kieee' )
+    breaksw
+  case T3E:
+  case sn6312:
+    set CPP        = ( '/opt/ctl/bin/cpp -P')
+    set DEFINES    = ( ${DEFINES} '-DTARGET_T3E -DWORDLENGTH=4' )
+    set FC         = ( 'f90' )
+    set LINK       = ( 'f90' )
+    set FFLAGS     = ( '-O 2,fusion' )
+    breaksw
+  case T90:
+  case sn7113:
+    set FC         = ( 'f90' )
+    set LINK       = ( 'f90' )
+    set LN         = ( '/bin/ln -fs' )
+    set CPP        = ( '/opt/ctl/bin/cpp -N -P' )
+    set DEFINES    = ( ${DEFINES} '-DTARGET_CRAY_VECTOR -DWORDLENGTH=4' )
+    set FFLAGS     = ( '-m3 -Rabc -N 132')
+    set FOPTIM     = ( '-O0' )
+    set NOOPTFLAGS = ( '-O0' )
+    set NOOPTFILES = ( 'barrier.F different_multiple.F external_fields_load.F')
+    breaksw
+  case SV1:
+  case sn3002:
+    set FC         = ( 'f90' )
+    set LINK       = ( 'f90' )
+    set LN         = ( '/bin/ln -fs' )
+    set CPP        = ( '/opt/ctl/bin/cpp -N -P' )
+    set DEFINES    = ( ${DEFINES} '-DTARGET_CRAY_VECTOR -DWORDLENGTH=4' )
+    set FFLAGS     = ( '-m3 -Rabc -ei -eI -s cf77types -N 132')
+    set FOPTIM     = ( '-O0' )
+    set NOOPTFLAGS = ( '-O0' )
+    set NOOPTFILES = ( 'barrier.F different_multiple.F external_fields_load.F')
     breaksw
   default:
     echo "Error: platform not recognized: uname -p = " $platform$USEMPI
@@ -213,32 +295,29 @@
 # Create list of files
 set flist = `ls -1 ${SOURCEDIRS} | grep '.*\.[F]$'`
 if ( $#flist ) then
- echo -n "SRCFILES = " > srclist.inc
- echo -n "F77FILES = " > f77list.inc
- echo -n "OBJFILES = " > objlist.inc
+ echo -n 'SRCFILES = ' > srclist.inc
  foreach ff ( ${flist} )
   set fname = ( ${ff:t}       )
-  echo ' \' >> srclist.inc
+  echo    ' \'                       >> srclist.inc
   echo -n "           " ${fname:r}.F >> srclist.inc
-  echo ' \' >> f77list.inc
-  echo -n "           " ${fname:r}.f >> f77list.inc
-  echo ' \' >> objlist.inc
-  echo -n "           " ${fname:r}.o >> objlist.inc
  end
 else
  echo No source files found...\!
  exit
 endif
+echo " " >> srclist.inc
+
 set flist = `ls -1 ${SOURCEDIRS} | grep '.*\.[c]$'`
 if ( $#flist ) then
+ echo -n 'CSRCFILES = ' > csrclist.inc
  foreach ff ( ${flist} )
   set fname = ( ${ff:t}       )
-  echo ' \' >> objlist.inc
-  echo -n "           " ${fname:r}.o >> objlist.inc
+  echo    ' \'                   >> csrclist.inc
+  echo -n "           " ${fname} >> csrclist.inc
+else
+ echo -n 'CSRCFILES =' > csrclist.inc
 endif
-echo " " >> srclist.inc
-echo " " >> f77list.inc
-echo " " >> objlist.inc
+echo " " >> csrclist.inc
 
 # Convert lists of directories into command-line options
 foreach inc ($INCLUDEDIRS)
@@ -289,6 +368,43 @@
 EXEDIR     = ${EXEDIR}
 EXECUTABLE = \$(EXEDIR)${EXECUTABLE}
 
+EOF
+
+
+# JAM libraries on Hyades
+if ($?include_jam_libs) then
+cat >> ${mfile} <<EOF
+# extra stuff for Hyades ............................................
+HYADES_DIR = /u/u0/cnh/jam-lib/software
+HYADES_DIR = /u/u0/cnh/jam-lib-twoproc
+WORK_DIR   = \$(HYADES_DIR)
+DEPOSIT_DIR = linux_bin
+
+STARTXOBJDIR = startx_util/\$(DEPOSIT_DIR)
+STARTXOBJ = \$(WORK_DIR)/startx_util/\$(DEPOSIT_DIR)/startx_timer.o \
+            \$(WORK_DIR)/startx_util/\$(DEPOSIT_DIR)/startx_util.o \
+            \$(WORK_DIR)/startx_util/\$(DEPOSIT_DIR)/client.o \
+            \$(WORK_DIR)/startx_util/\$(DEPOSIT_DIR)/csutil.o
+
+JAMOBJDIR  = jam/\$(DEPOSIT_DIR)
+JAMOBJ     = \$(WORK_DIR)/jam/\$(DEPOSIT_DIR)/jam_init.o \
+             \$(WORK_DIR)/jam/\$(DEPOSIT_DIR)/jam_kernel.o \
+             \$(WORK_DIR)/jam/\$(DEPOSIT_DIR)/jam_malloc.o \
+             \$(WORK_DIR)/jam/\$(DEPOSIT_DIR)/jam_vmalloc.o \
+             \$(WORK_DIR)/jam/\$(DEPOSIT_DIR)/jam_mutex.o
+
+JAMCOBJDIR = jam_collective/\$(DEPOSIT_DIR)
+JAMCOBJ    = \$(WORK_DIR)/jam_collective/\$(DEPOSIT_DIR)/jam_collective.o
+
+XLIBS      = \$(STARTXOBJ) \$(JAMOBJ) \$(JAMCOBJ)
+
+# ..................................................................
+
+EOF
+endif
+
+
+cat >> ${mfile} <<EOF
 # Unix ln (link)
 LN = ${LN}
 # C preprocessor
@@ -314,14 +430,16 @@
 NOOPTFILES = ${NOOPTFILES}
 NOOPTFLAGS = ${NOOPTFLAGS}
 # Flags and libraries needed for linking
-LIBS = ${LIBS}
+LIBS = ${LIBS} \$(XLIBS)
 
 EOF
 
-cat srclist.inc >> ${mfile}
-cat f77list.inc >> ${mfile}
-cat objlist.inc >> ${mfile}
-rm -f srclist.inc f77list.inc objlist.inc
+cat srclist.inc  >> ${mfile}
+cat csrclist.inc >> ${mfile}
+echo 'F77FILES =  $(SRCFILES:.F=.f)'                    >> ${mfile}
+echo 'OBJFILES =  $(SRCFILES:.F=.o) $(CSRCFILES:.c=.o)' >> ${mfile}
+
+rm -f srclist.inc
 
 cat >> ${mfile} <<EOF
 
@@ -336,12 +454,20 @@
 depend:
 	@make links
 	makedepend -o .f \$(INCLUDES) \$(SRCFILES)
+
+small_f: \$(F77FILES)
+
 clean:
 	-rm -rf *.o *.f *.p ${RMFILES}
 Clean:
 	@make clean
 	-find . -type l -exec rm {} \;
 	-rm Makefile.bak
+CLEAN:
+	@make Clean
+	-find ../verification/ -name "*.meta" -exec rm {} \;
+	-find ../verification/ -name "*.data" -exec rm {} \;
+	-rm \$(EXECUTABLE)
 
 # The normal chain of rules is (  .F - .f - .o  )
 .F.f: