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Added (uncommented) header links. Header files are now linked just like other source files.
Added -ieee flag to genmake (only affect Linux for now) to see if we can pin-down this rediculous sensitivity of model to small changes in code. Testscript uses -ieee by default.
Removed KAP stuff for DEC's since most people don't have it and we weren't using it anyway.
Added grdchk to default disable list.
Added ini_cori.F to NOOPTFILES on SUNs. It seems any trig. fns inside loops get vectorized incorrectly! Definitately a compiler bug.
Added ini_spherical_polar_grid.F to NOOPTFILES for new SUNs.
Merge from branch pre38: o essential mods for cubed sphere o debugged atmosphere, dynamcis + physics (aim) o new packages (mom_vecinv, mom_fluxform, ...)
Added the following packages to default disable: autodiff cal cost ctrl ecco exf. We might think of adding kpp iand gmredi as well.
package "timeave" replacing "diags": remove dir "diags" from standard path
Added makefile and cleanlinks targets to help automated testing.
Fixed -disable=all. I previously added a test to make sure that -disable=pkg failed if pkg didn't exist.
Switched order of source code directories (pkg/* now infront of model/src, eesupp/src and diags/src). Added catch for diabling non-existent package.
Simplified setting of EXEDIR to fix bug in .genmakerc
Change "make CLEAN" to clean *.meta and *.data files from $EXEDIR rather than $ROOTDIR/verification/*/input . Safer this way.
Broke -rootdir=dir when adding auto scan feature.
Added autoscan feature to set ROOTDIR if not specified.
Changes to make c35 work on DEC. Refs. to unitialized array elements and compile options.
Fixed comma separated lists bug.
Merged changes from branch "branch-atmos-merge" into MAIN (checkpoint34) - substantial modifications to algorithm sequence (dynamics.F) - packaged OBCS, Shapiro filter, Zonal filter, Atmospheric Physics
Fix so that "make CLEAN" doesn't delete files in natl_box/output
Added csrclist.inc to the remove list after Makefile generation
Adopted to new routine external_fields_load.F.
Added target small_f to create source code for TAMC before compiling.
Added cases for Cray T90 (sn7113) and SV1 (sn3002): TARGET_CRAY_VECTOR. (P.H.)
Added paths to ../pkg/ directory.
Added yet another Hyades only path for the two-proc libraries
Set LIBS properly for JAM libaries. (affects Hyades only)
Tidied up the options for the Linux platform.
Minor mods for compiling on T3E.
Added "JAM" routines for use with Artic network (Hyades cluster).
Set value for WORDLENGTH on all platforms in genmake.
Implemented new I/O package (mdsio.F). This package does parallel I/O in much the same way as dfile.F used to except it uses "direct access" rather than (f77) unformatted sequential access. Problems with dfile.F package included: o unnecessary memory use (each process had two global sized buffers) o inability to read the files it had written without post-processing o "tiled" files were tiled by process/thread rather than actual tiles o created huge numbers of files with no alternatives Features of the mdsio.F package: o direct-access binary writes o no excessive memory use o ability to read/write from multiple record files o "tiled" files are based on "WRAPPER" tiles so that the number and content of files is independent of the number of threads and/or processes o option to create single "global" files rather than "tiled" files o ability to read both "global" and "tiled" files [Caveat: the tiling of files must match the model tiles] o checkpoints now use a single file per model section ie. one file for the hydrostatic model core, one file for the non-hydrostatic extensions and one file for the C-D extensions o the mid-level I/O routines now is broken into more source files read_write_fld.F supplies basic I/O routines with the same interface as the original I/O package read_write_rec.F supplies I/O routines which allow multiple records write_state.F writes the model state checkpoint.F supplies the read/write checkpoint routines All the example input data has had to be modified to be direct-access. Otherwise only routines that used I/O have been affected and not all of those have been due to the continuity of arguments in the read_write_fld.F routines. What needs to be done? We have to create a suite of conversion utilities for users with old-style data. Also supply the option for using old-style I/O, not just for die-hards but for reading data too extensive to be converted. And more...
Changes for linux and command line operation.
Change of rule "Clean". Clean used to remove *.[Fc] but this might be dangerous. So now it removes only links.
Changes to allow for atmospheric integration builds of the code
Changes to support - g77 compilation under Linux - LR(1) form of 64-bit is D or E for constants - Modified adjoint of exch with adjoint variables acuumulated.
Correction to missing file tim.c and genmake for checkpoint15
Changes for new exchange routines which do general tile <-> tile connectivity, variable width overlap regions and provide hooks for shared memory and DMA protocols like Arctic, Memory Channel etc..
Added changes for SGI onyx support HP Exemplar support from Dimitri
We decided to skip the KAP preprocessor stage on the DEC Alpha's by default. (KAP isn't always available, even on our own well maintained platforms...)
Tidy up configure (now genmake!) and doc/README for release of checkpoint12.
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