--- MITgcm/tools/genmake2 2004/09/04 18:19:20 1.97 +++ MITgcm/tools/genmake2 2006/03/29 19:28:02 1.145 @@ -1,6 +1,6 @@ #! /usr/bin/env bash # -# $Header: /home/ubuntu/mnt/e9_copy/MITgcm/tools/genmake2,v 1.97 2004/09/04 18:19:20 edhill Exp $ +# $Header: /home/ubuntu/mnt/e9_copy/MITgcm/tools/genmake2,v 1.145 2006/03/29 19:28:02 jmc Exp $ # # Makefile generator for MITgcm UV codes # created by cnh 03/98 @@ -122,12 +122,12 @@ stop end EOF - test -f Makefile && mv -f Makefile Makefile.bak - cat <> Makefile -%.$tfs : %.F + test -f $MAKEFILE && mv -f $MAKEFILE $MAKEFILE".tst" + cat <> $MAKEFILE .SUFFIXES: -genmake_hello.$tfs: genmake_hello.F - $LN genmake_hello.F genmake_hello.$tfs +.SUFFIXES: .$tfs .F +.F.$tfs: + $LN \$< \$@ EOF $MAKE "genmake_hello."$tfs > /dev/null 2>&1 RETVAL=$? @@ -148,8 +148,8 @@ return fi fi - rm -f genmake_hello.* Makefile - test -f Makefile && mv -f Makefile.bak Makefile + rm -f genmake_hello.* $MAKEFILE + test -f $MAKEFILE".tst" && mv -f $MAKEFILE".tst" $MAKEFILE # If we make it here, use the extensions FS=$tfs @@ -181,6 +181,15 @@ if test "x${MAKEDEPEND}" = x ; then which makedepend > /dev/null 2>&1 RV0=$? + test -f $MAKEFILE && mv -f $MAKEFILE $MAKEFILE".tst" + # echo 'MAKEFILE="'$MAKEFILE'"' + cat <> $MAKEFILE +# THIS IS A TEST MAKEFILE GENERATED BY "genmake2" +# +# Some "makedepend" implementations will die if they cannot +# find a Makefile -- so this file is here to gives them an +# empty one to find and parse. +EOF cat <> genmake_tc.f program test write(*,*) 'test' @@ -189,6 +198,8 @@ EOF makedepend genmake_tc.f > /dev/null 2>&1 RV1=$? + test -f $MAKEFILE && rm -f $MAKEFILE + test -f $MAKEFILE".tst" && mv -f $MAKEFILE".tst" $MAKEFILE if test "x${RV0}${RV1}" = x00 ; then MAKEDEPEND=makedepend else @@ -237,6 +248,41 @@ fi } + +build_embed_encode() +{ + printf " building the embed-encode utility... " + if test ! -e "$ROOTDIR/tools/embed_encode/encode_files" ; then + if test ! -d "$ROOTDIR/tools/embed_encode" ; then + echo + echo " Error: can't locate \"$ROOTDIR/tools/embed_encode\"" + echo + EMBED_SRC=f + return 1 + fi + clist="cc gcc c89 $CC" + for ic in $clist ; do + comm="$ic -o encode_files encode_files.c" + ( cd $ROOTDIR/tools/embed_encode && $comm ) > /dev/null 2>&1 + RETVAL=$? + if test "x$RETVAL" = x0 ; then + echo "OK" + DEFINES="$DEFINES -DHAVE_EMBED_SRC" + return 0 + fi + done + echo + echo " Error: unable to build $ROOTDIR/embed_encode/encode_files" + echo " so it has been disabled" + echo + EMBED_SRC=f + return 1 + fi + echo "OK" + DEFINES="$DEFINES -DHAVE_EMBED_SRC" +} + + # Guess possible config options for this host find_possible_configs() { @@ -310,7 +356,7 @@ #================================================================ # look for possible FORTRAN compilers - tmp="$MITGCM_FC $FC efc g77 f77 pgf77 pgf95 ifc f90 f95 mpif77 mpf77 mpxlf95" + tmp="$MITGCM_FC $FC efc g77 f77 pgf77 pgf95 ifc f90 f95 mpif77 mpf77 mpxlf95 gfortran" p_FC= for c in $tmp ; do rm -f ./hello.f ./hello @@ -342,10 +388,18 @@ else echo " The possible FORTRAN compilers found in your path are:" echo " "$p_FC - if test "x$FC" = x ; then - FC=`echo $p_FC | $AWK '{print $1}'` - echo " Setting FORTRAN compiler to: "$FC - fi + fi + + # Use the first of the compilers found in the current PATH + # that has a correctly-named optfile + if test "x$OPTFILE" = x -a "x$FC" = x ; then + for i in $p_FC ; do + OPTFILE=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$i + if test -r $OPTFILE ; then + echo " Setting OPTFILE to: "$OPTFILE + break + fi + done fi if test "x$OPTFILE" = x ; then @@ -516,6 +570,26 @@ *only* works if it is supported by the OPTFILE that is being used. + -ignoretime | -ignore_time | --ignoretime | --ignore_time + Ignore all the "wall clock" routines entirely. This will + not in any way hurt the model results -- it simply means + that the code that checks how long the model spends in + various routines will give junk values. + + -ts | --ts + Produce timing information per timestep + -papis | --papis + Produce summary MFlop/s with PAPI per timestep + -foolad | --foolad + Fool the AD code generator + -papi | --papi + Performance analysis with PAPI + -hpmt | --hpmt + Performance analysis with the HPM Toolkit + + -gsl | --gsl + Use GSL to control floating point rounding and precision + -mpi | --mpi Include MPI header files and link to MPI libraries -mpi=PATH | --mpi=PATH @@ -523,6 +597,11 @@ set to PATH. i.e. Include files from \$PATH/include, link to libraries from \$PATH/lib and use binaries from \$PATH/bin. + -es | --es | -embed-source | --embed-source + Embed a tarball containing the full source code + (including the Makefile, etc.) used to build the + executable [off by default] + -bash NAME Explicitly specify the Bourne or BASH shell to use @@ -581,13 +660,13 @@ EOF return 1 fi - cat > genmake_tcomp.f < genmake_tcomp.$FS <> genmake_warnings 2>&1 + $FC $FFLAGS -c genmake_tcomp.$FS >> genmake_warnings 2>&1 RETVAL=$? if test "x$RETVAL" != x0 ; then FC_NAMEMANGLE=$default_nm @@ -653,19 +732,19 @@ *curtim = *curtim/1.E6; } EOF - make genmake_tc_1.o >> genmake_tc.log 2>&1 + make genmake_tc_1.o >> genmake_warnings 2>&1 RET_C=$? - cat < genmake_tc_2.f + cat < genmake_tc_2.$FS program hello - Real*8 wtime + REAL*8 wtime external cloc call cloc(wtime) print *," HELLO WORLD", wtime - end program hello + end EOF - $FC $FFLAGS -o genmake_tc genmake_tc_2.f genmake_tc_1.o >> genmake_tc.log 2>&1 + $FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o >> genmake_warnings 2>&1 RET_F=$? - test -x ./genmake_tc && ./genmake_tc >> genmake_tc.log 2>&1 + test -x ./genmake_tc && ./genmake_tc >> genmake_warnings 2>&1 RETVAL=$? if test "x$RETVAL" = x0 ; then HAVE_CLOC=t @@ -675,11 +754,161 @@ } +check_HAVE_SIGREG() { + get_fortran_c_namemangling + cat < genmake_tc_1.c +$FC_NAMEMANGLE +#include +#include +#include +#include +#include + +int * ip; + +static void killhandler( + unsigned int sn, siginfo_t si, struct ucontext *sc ) +{ + *ip = *ip + 1; + return; +} + +void FC_NAMEMANGLE(sigreg) (int * aip) +{ + struct sigaction s; + ip = aip; + s.sa_flags = SA_SIGINFO; + s.sa_sigaction = (void *)killhandler; + if(sigaction (SIGTERM,&s,(struct sigaction *)NULL)) { + printf("Sigaction returned error = %d\n", errno); + exit(0); + } + return; +} +EOF + make genmake_tc_1.o >> genmake_warnings 2>&1 + RET_C=$? + cat < genmake_tc_2.$FS + program hello + integer anint + common /iv/ anint + external sigreg + call sigreg(anint) + end +EOF + echo >> genmake_warnings + echo "running: check_HAVE_SIGREG()" >> genmake_warnings + cat genmake_tc_2.$FS >> genmake_warnings + COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o" + echo $COMM >> genmake_warnings + $COMM >> genmake_warnings 2>&1 + RETVAL=$? + if test "x$RETVAL" = x0 ; then + HAVE_SIGREG=t + DEFINES="$DEFINES -DHAVE_SIGREG" + fi + rm -f genmake_tc* +} + + +check_HAVE_SETRLSTK() { + get_fortran_c_namemangling + cat < genmake_tc_1.c +$FC_NAMEMANGLE +#include +#include +#include +void FC_NAMEMANGLE(setrlstk) () +{ + struct rlimit rls; + rls.rlim_cur = RLIM_INFINITY; + rls.rlim_max = RLIM_INFINITY; + setrlimit(RLIMIT_STACK, &rls); + return; +} +EOF + make genmake_tc_1.o >> genmake_warnings 2>&1 + RET_C=$? + cat < genmake_tc_2.$FS + program hello + external setrlstk + call setrlstk() + end +EOF + echo >> genmake_warnings + echo "running: check_HAVE_SETRLSTK()" >> genmake_warnings + cat genmake_tc_2.$FS >> genmake_warnings + COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o" + echo $COMM >> genmake_warnings + $COMM >> genmake_warnings 2>&1 + RETVAL=$? + if test "x$RETVAL" = x0 ; then + HAVE_SETRLSTK=t + DEFINES="$DEFINES -DHAVE_SETRLSTK" + fi + rm -f genmake_tc* +} + + +check_HAVE_STAT() { + get_fortran_c_namemangling + cat < genmake_tc_1.c +$FC_NAMEMANGLE +#include +#include +#include +#include +#include +void FC_NAMEMANGLE(tfsize) ( int *nbyte ) +{ + char name[512]; + struct stat astat; + + name[0] = 'a'; name[1] = '\0'; + if (! stat(name, &astat)) + *nbyte = (int)(astat.st_size); + else + *nbyte = -1; +} +EOF + make genmake_tc_1.o >> genmake_tc.log 2>&1 + RET_C=$? + cat < genmake_tc_2.$FS + program hello + integer nbyte + call tfsize(nbyte) + print *," HELLO WORLD", nbyte + end +EOF + echo >> genmake_warnings + echo "running: check_HAVE_STAT()" >> genmake_warnings + cat genmake_tc_2.$FS >> genmake_warnings + COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o" + echo $COMM >> genmake_warnings + $COMM >> genmake_tc.log 2>&1 + RETVAL=$? + if test "x$RETVAL" = x0 ; then + HAVE_STAT=t + DEFINES="$DEFINES -DHAVE_STAT" + fi + rm -f genmake_tc* +} + + check_netcdf_libs() { - echo "" > genmake_tnc.log - cat < genmake_tnc.for + if test ! "x$SKIP_NETCDF_CHECK" = x ; then + return + fi + echo >> genmake_warnings + echo "running: check_netcdf_libs()" >> genmake_warnings + cat < genmake_tnc.F program fgennc #include "netcdf.inc" +EOF + if test ! "x$MPI" = x ; then + echo '#include "mpif.h"' >> genmake_tnc.F + fi + cat <> genmake_tnc.F integer iret, ncid, xid iret = nf_create('genmake_tnc.nc', NF_CLOBBER, ncid) IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret) @@ -689,30 +918,49 @@ IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret) end EOF - #echo "$CPP $DEFINES $INCLUDES genmake_tnc.for > genmake_tnc.f" - #echo "$FC $FFLAGS $FOPTIM -c genmake_tnc.f" - #echo "$LINK -o genmake_tnc.o $LIBS" - $CPP $DEFINES $INCLUDES genmake_tnc.for > genmake_tnc.f 2>/dev/null \ - && $FC $FFLAGS $FOPTIM -c genmake_tnc.f \ + echo "=== genmake_tnc.F ===" > genmake_tnc.log + cat genmake_tnc.F >> genmake_tnc.log + echo "=== genmake_tnc.F ===" >> genmake_tnc.log + RET_CPP=f + COMM="$CPP $DEFINES $INCLUDES genmake_tnc.F" + echo "$COMM" >> genmake_tnc.log + $COMM > genmake_tnc.$FS 2>/dev/null && RET_CPP=t + if test "x$RET_CPP" = xf ; then + echo " WARNING: CPP failed to pre-process the netcdf test." \ + >> genmake_tnc.log + echo " Please check that \$INCLUDES is properly set." \ + >> genmake_tnc.log + fi + echo "$FC $FFLAGS $FOPTIM -c genmake_tnc.$FS \ " >> genmake_tnc.log + echo " && $LINK -o genmake_tnc.o $LIBS" >> genmake_tnc.log + $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS >> genmake_tnc.log 2>&1 \ && $LINK -o genmake_tnc genmake_tnc.o $LIBS >> genmake_tnc.log 2>&1 RET_COMPILE=$? - test -x ./genmake_tnc && ./genmake_tnc >> genmake_tnc.log 2>&1 - RETVAL=$? - if test "x$RET_COMPILE" = x0 -a "x$RETVAL" = x0 ; then + cat genmake_tnc.log >> genmake_warnings + + #EH3 Remove test program execution for machines that either disallow + #EH3 execution or cannot support it (eg. cross-compilers) + #EH3 + #EH3 test -x ./genmake_tnc && ./genmake_tnc >> genmake_tnc.log 2>&1 + #EH3 RETVAL=$? + #EH3 if test "x$RET_COMPILE" = x0 -a "x$RETVAL" = x0 ; then + + if test "x$RET_COMPILE" = x0 ; then HAVE_NETCDF=t else # try again with "-lnetcdf" added to the libs - $CPP $DEFINES $INCLUDES genmake_tnc.for > genmake_tnc.f 2>/dev/null \ - && $FC $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.f \ - $LIBS -lnetcdf >> genmake_tnc_2.log 2>&1 + echo "try again with added '-lnetcdf'" > genmake_tnc.log + echo "$CPP $DEFINES $INCLUDES genmake_tnc.F > genmake_tnc.$FS \ " >> genmake_tnc.log + echo " && $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS \ " >> genmake_tnc.log + echo " && $LINK -o genmake_tnc genmake_tnc.o $LIBS -lnetcdf" >> genmake_tnc.log + $CPP $DEFINES $INCLUDES genmake_tnc.F > genmake_tnc.$FS 2>/dev/null \ + && $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS >> genmake_tnc.log 2>&1 \ + && $LINK -o genmake_tnc genmake_tnc.o $LIBS -lnetcdf >> genmake_tnc.log 2>&1 RET_COMPILE=$? - test -x ./genmake_tnc && ./genmake_tnc >> genmake_tnc.log 2>&1 - RETVAL=$? - if test "x$RET_COMPILE" = x0 -a "x$RETVAL" = x0 ; then + cat genmake_tnc.log >> genmake_warnings + if test "x$RET_COMPILE" = x0 ; then LIBS="$LIBS -lnetcdf" HAVE_NETCDF=t - else - cat genmake_tnc.log >> genmake_warnings fi fi rm -f genmake_tnc* @@ -731,21 +979,21 @@ LN= S64= KPP= -FC= +#FC= #CC=gcc -CPP= +#CPP= LINK= DEFINES= PACKAGES= ENABLE= DISABLE= -MAKEFILE= -#MAKEDEPEND= +# MAKEFILE= +# MAKEDEPEND= PDEPEND= DUMPSTATE=t PDEFAULT= OPTFILE= -INCLUDES="-I." +INCLUDES="-I. $INCLUDES" FFLAGS= FOPTIM= CFLAGS= @@ -758,14 +1006,24 @@ NOOPTFLAGS= MPI= MPIPATH= +TS= +PAPIS= +FOOLAD= +PAPI= +HPMT= +GSL= +HAVE_TEST_L= -# DEFINES checked by test compilation +# DEFINES checked by test compilation or command-line HAVE_SYSTEM= HAVE_FDATE= FC_NAMEMANGLE= HAVE_CLOC= +HAVE_SETRLSTK= +HAVE_STAT= HAVE_NETCDF= HAVE_ETIME= +IGNORE_TIME= MODS= TOOLSDIR= @@ -776,8 +1034,9 @@ G2ARGS= BASH= PWD=`pwd` -MAKE=make -AWK=awk +test "x$MAKE" = x && MAKE=make +test "x$AWK" = x && AWK=awk +EMBED_SRC= THISHOST=`hostname` THISCWD=`pwd` THISDATE=`date` @@ -811,7 +1070,7 @@ # The following state can be set directly by command-line switches gm_s1="OPTFILE PDEPEND PDEFAULT MAKEFILE PLATFORM ROOTDIR MODS DISABLE ENABLE" -gm_s2="FC CPP IEEE MPI JAM DUMPSTATE STANDARDDIRS" +gm_s2="FC CPP IEEE TS PAPIS PAPI HPMT GSL MPI JAM DUMPSTATE STANDARDDIRS" # The following state is not directly set by command-line switches gm_s3="LN S64 KPP LINK PACKAGES MAKEDEPEND PDEPEND PDEFAULT INCLUDES FFLAGS FOPTIM " @@ -857,7 +1116,7 @@ echo "none found" fi -# echo "$0::$1:$2:$3:$4:$5:$6:$7:" +#echo "$0::$1:$2:$3:$4:$5:$6:$7:" #OPTIONS= #n=0 #for i ; do @@ -869,7 +1128,7 @@ #done #parse_options ac_prev= -for ac_option in $@ ; do +for ac_option in "$@" ; do G2ARGS="$G2ARGS \"$ac_option\"" @@ -991,6 +1250,20 @@ -noieee | --noieee) IEEE= ;; + -ts | --ts) + TS=true ;; + -papis | --papis) + PAPIS=true ;; + -foolad | --foolad) + FOOLAD=true ;; + -papi | --papi) + PAPI=true ;; + -hpmt | --hpmt) + HPMT=true ;; + + -gsl | --gsl) + GSL=true ;; + -mpi | --mpi) MPI=true ;; -mpi=* | --mpi=*) @@ -1014,6 +1287,12 @@ ac_prev=TAMC_EXTRA ;; -tamc_extra=* | --tamc_extra=*) TAMC_EXTRA=$ac_optarg ;; + + -ignoretime | -ignore_time | --ignoretime | --ignore_time) + IGNORE_TIME="-DIGNORE_TIME" ;; + + -es | --es | -embed-source | --embed-source) + EMBED_SRC=t ;; -*) echo "Error: unrecognized option: "$ac_option @@ -1029,6 +1308,7 @@ done + if test -f ./.genmakerc ; then echo echo "WARNING: genmake2 has detected a copy of the old-style \"./.genmakerc\"" @@ -1043,7 +1323,7 @@ # Find the MITgcm ${ROOTDIR} if test "x${ROOTDIR}" = x ; then - tmp=`echo $PWD | sed -e 's/\// /g' | awk '{print $NR}'` + tmp=`echo $PWD | sed -e 's/\// /g' | $AWK '{print $NR}'` if test "x$tmp" = "xbin" -a -d ../model -a -d ../eesup -a -d ../pkg ; then ROOTDIR=".." else @@ -1070,7 +1350,11 @@ # Find the MITgcm ${THISVER} if test -f "${ROOTDIR}/doc/tag-index" ; then - THISVER=`grep checkpoint ${ROOTDIR}/doc/tag-index | head -1` + THISVER=`grep '^checkpoint' ${ROOTDIR}/doc/tag-index | head -1` +fi + +if test "x$MAKEFILE" = x ; then + MAKEFILE="Makefile" fi echo " getting OPTFILE information: " @@ -1102,9 +1386,6 @@ fi fi -# Check for broken systems that cannot correctly distinguish *.F and *.f files -# check_for_broken_Ff - echo " getting AD_OPTFILE information: " if test "x${AD_OPTFILE}" = x ; then if test "x$MITGCM_AD_OF" = x ; then @@ -1132,6 +1413,9 @@ fi fi +#==================================================================== +# Set default values if not set by the optfile +# # Check that FC, CC, LINK, CPP, S64, LN, and MAKE are defined. If not, # either set defaults or complain and abort! if test ! "x$BASH" = x ; then @@ -1208,6 +1492,11 @@ EOF exit 1 fi +test -L genmake_tlink > /dev/null 2>&1 +RETVAL=$? +if test "x$RETVAL" = x0 ; then + HAVE_TEST_L=t +fi rm -f genmake_test_ln genmake_tlink # Check for broken *.F/*.f handling and fix if possible @@ -1218,14 +1507,65 @@ DEFINES="$DEFINES -DALLOW_USE_MPI -DALWAYS_USE_MPI" fi +if test ! "x$TS" = x ; then + echo " Turning on timing per timestep" + if test ! "x$FOOLAD" = x ; then + DEFINES="$DEFINES -DTIME_PER_TIMESTEP_SFP" + else + DEFINES="$DEFINES -DTIME_PER_TIMESTEP" + fi +fi +if test ! "x$PAPIS" = x ; then + echo " Turning on PAPI flop summary per timestep" + echo " Please make sure PAPIINC, PAPILIB are defined" + if test ! "x$FOOLAD" = x ; then + DEFINES="$DEFINES -DUSE_PAPI_FLOPS_SFP" + else + DEFINES="$DEFINES -DUSE_PAPI_FLOPS" + fi + INCLUDES="$INCLUDES $PAPIINC" + LIBS="$LIBS $PAPILIB" +fi +if test ! "x$PAPI" = x ; then + if test ! "x$PAPIS" = x ; then + echo " PAPI performance analysis and flop summary per timestep cannot co-exist!" + echo " Sticking with PAPI flop summary per timestep!" + else + echo " Turning on performance analysis with PAPI" + echo " Please make sure PAPIINC, PAPILIB are defined" + DEFINES="$DEFINES -DUSE_PAPI" + INCLUDES="$INCLUDES $PAPIINC" + LIBS="$LIBS $PAPILIB" + fi +fi +if test ! "x$HPMT" = x ; then + if test ! "x$PAPI" = x ; then + echo " PAPI and the HPM Toolkit cannot co-exist!" + echo " Sticking with PAPI!" + else + echo " Turning on performance analysis with the HPM Toolkit" + echo " Please make sure HPMTINC, HPMTLIB are defined" + DEFINES="$DEFINES -DUSE_LIBHPM" + INCLUDES="$INCLUDES $HPMTINC" + LIBS="$LIBS $HPMTLIB" + fi +fi +if test ! "x$GSL" = x ; then + echo " Turning on use of GSL to control floating point calculations" + echo " Please make sure GSLINC, GSLLIB are defined" + DEFINES="$DEFINES -DUSE_GSL_IEEE" + INCLUDES="$INCLUDES $GSLINC" + LIBS="$LIBS $GSLLIB" +fi + printf "\n=== Checking system libraries ===\n" printf " Do we have the system() command using $FC... " -cat > genmake_tcomp.f < genmake_tcomp.$FS < genmake_tcomp.log 2>&1 +$FC $FFLAGS -o genmake_tcomp genmake_tcomp.$FS > genmake_tcomp.log 2>&1 RETVAL=$? if test "x$RETVAL" = x0 ; then HAVE_SYSTEM=t @@ -1238,15 +1578,15 @@ rm -f genmake_tcomp* printf " Do we have the fdate() command using $FC... " -cat > genmake_tcomp.f < genmake_tcomp.$FS < genmake_tcomp.log 2>&1 +$FC $FFLAGS -o genmake_tcomp genmake_tcomp.$FS > genmake_tcomp.log 2>&1 RETVAL=$? if test "x$RETVAL" = x0 ; then HAVE_FDATE=t @@ -1259,7 +1599,7 @@ rm -f genmake_tcomp* printf " Do we have the etime() command using $FC... " -cat > genmake_tcomp.f < genmake_tcomp.$FS < genmake_tcomp.log 2>&1 +$FC $FFLAGS -o genmake_tcomp genmake_tcomp.$FS > genmake_tcomp.log 2>&1 RETVAL=$? if test "x$RETVAL" = x0 ; then HAVE_ETIME=t @@ -1286,6 +1626,38 @@ echo "yes" else echo "no" + if test "x$EMBED_SRC" = xt ; then + echo " WARNING: you requested file embedding but it has" + echo " been disabled since C code cannot be called" + EMBED_SRC= + fi +fi +rm -f genmake_t* + +printf " Can we unlimit the stack size using $FC... " +check_HAVE_SETRLSTK +if test "x$HAVE_SETRLSTK" != x ; then + echo "yes" +else + echo "no" +fi +rm -f genmake_t* + +printf " Can we register a signal handler using $FC... " +check_HAVE_SIGREG +if test "x$HAVE_SIGREG" != x ; then + echo "yes" +else + echo "no" +fi +rm -f genmake_t* + +printf " Can we use stat() through C calls... " +check_HAVE_STAT +if test "x$HAVE_STAT" != x ; then + echo "yes" +else + echo "no" fi rm -f genmake_t* @@ -1296,6 +1668,14 @@ else echo "no" fi +DEFINES="$DEFINES $IGNORE_TIME" + +if test "x$EMBED_SRC" = xt ; then + build_embed_encode +fi +if test "x$EMBED_SRC" = xt ; then + ENABLE="$ENABLE embed_files" +fi printf "\n=== Setting defaults ===\n" @@ -1313,15 +1693,12 @@ done echo -if test "x$MAKEFILE" = x ; then - MAKEFILE="Makefile" -fi if test "x${PLATFORM}" = x ; then PLATFORM=$p_PLATFORM fi if test "x${EXEDIR}" = x ; then - tmp=`echo $PWD | sed -e 's/\// /g' | awk '{print $NR}'` + tmp=`echo $PWD | sed -e 's/\// /g' | $AWK '{print $NR}'` if test "x$tmp" = "xbin" -a -d ../exe -a $ROOTDIR = .. ; then EXEDIR=../exe else @@ -1341,7 +1718,30 @@ exit 1 fi if test "x$S64" = x ; then - S64='$(TOOLSDIR)/set64bitConst.sh' + echo "3.0 _d 3" | ${TOOLSDIR}/set64bitConst.sh > /dev/null 2>&1 + RETVAL=$? + if test "x${RETVAL}" = x0 ; then + S64='$(TOOLSDIR)/set64bitConst.sh' + else + echo "3.0 _d 3" | ${TOOLSDIR}/set64bitConst.csh > /dev/null 2>&1 + RETVAL=$? + if test "x${RETVAL}" = x0 ; then + S64='$(TOOLSDIR)/set64bitConst.csh' + else + cat < /dev/null 2>&1 +RETVAL=$? +if test "x$RETVAL" = x0 ; then + if test "x$HAVE_NETCDF" != xt ; then + cat < make_mnc.errors 2>&1 + RETVAL=$? + if test "x${RETVAL}" = x0 ; then + rm -f make_mnc.errors + else + echo "Error: problem encountered while building source files in pkg/mnc:" + cat make_mnc.errors 1>&2 + exit 1 + fi + fi +fi + echo " applying package dependency rules" ck= while test "x$ck" != xtt ; do @@ -1570,33 +2005,6 @@ fi done -# Build MNC templates and check for ability to build and use NetCDF -echo $PACKAGES | grep ' mnc ' > /dev/null 2>&1 -RETVAL=$? -if test "x$RETVAL" = x0 ; then - ( cd $ROOTDIR"/pkg/mnc" && $MAKE templates ) > make_mnc.errors 2>&1 - RETVAL=$? - if test "x${RETVAL}" = x0 ; then - rm -f make_mnc.errors - else - echo "Error: problem encountered while building source files in pkg/mnc:" - cat make_mnc.errors 1>&2 - exit 1 - fi - if test "x$HAVE_NETCDF" != xt ; then - cat <> ad_files done done - +if test ! "x"$FS = "x.f" ; then + cat ad_files | sed -e "s/\.f/.$FS/g" > ad_files_f + mv -f ad_files_f ad_files +fi echo echo "=== Creating the Makefile ===" @@ -1718,9 +2129,52 @@ fi done +if test ! "x$DIVA" = x ; then + echo " Creating the pseudo-MPI include directory" + INCLUDES="-I./mpi_headers $INCLUDES" + rm -rf ./mpi_headers + mkdir -p ./mpi_headers + + if test "x$MPIINCLUDEDIR" = x ; then + if test "x$MPIHOME" = x ; then + MPIHOME='/usr' + fi + MPIINCLUDEDIR='$MPIHOME/include' + fi + + if test -r $MPIINCLUDEDIR/mpif.h ; then + for i in $MPI_HEADER_FILES; do + cp -p $MPIINCLUDEDIR/$i ./mpi_headers + done + + perl -i -pe 's/MPI_DISPLACEMENT_CURRENT=-1_8/MPI_DISPLACEMENT_CURRENT=-1/g' mpi_headers/mpif.h + else + echo " We cannot create a copy of mpif.h!" + exit -1 + fi +fi + echo " Determining the list of source and include files" rm -rf .links.tmp mkdir .links.tmp +touch .links.tmp/foo +if test ! -r ".links.tmp/foo" ; then + echo + echo "ERROR : something is wrong with your directory permissions or" + echo " your user file-creation mask (\"umask\") since creating a" + echo " sub-dir, touch-ing a file within it, and then reading it is" + echo " not working. Please try setting your umask to something" + echo " sane such as:" + echo + echo " umask 0002" + echo + echo " and please verify that you have the proper permissions for" + echo " creating sub-directories and then reading files created" + echo " within them." + echo + exit 1 +fi +rm -f .links.tmp/foo echo "# This section creates symbolic links" > srclinks.tmp echo "" >> srclinks.tmp printf 'SRCFILES = ' > srclist.inc @@ -1736,41 +2190,59 @@ for sf in $sfiles ; do if test ! -r ".links.tmp/$sf" ; then if test -f "$d/$sf" ; then + ignore_f=f case $d/$sf in ./$PACKAGES_DOT_H) + ignore_f=t ;; ./AD_CONFIG.h) + ignore_f=t ;; ./FC_NAMEMANGLE.h) + ignore_f=t ;; - *) - touch .links.tmp/$sf - deplist="$deplist $sf" - ;; - esac - extn=`echo $sf | $AWK -F '.' '{print $NF}'` - case $extn in - F) - echo " \\" >> srclist.inc - printf " $sf" >> srclist.inc - ;; - F90) - echo " \\" >> f90srclist.inc - printf " $sf" >> f90srclist.inc - ;; - c) - echo " \\" >> csrclist.inc - printf " $sf" >> csrclist.inc + ./BUILD_INFO.h) + ignore_f=t ;; - h) - echo " \\" >> hlist.inc - printf " $sf" >> hlist.inc + ./EMBEDDED_FILES.h) + ignore_f=t ;; - flow) - echo " \\" >> ad_flow_files.inc - printf " $sf" >> ad_flow_files.inc + *) + # For the local directory *ONLY*, + # ignore all soft-links + if test "x$HAVE_TEST_L" = xt -a "x$d" = x. -a -L $sf ; then + ignore_f=t + else + touch .links.tmp/$sf + deplist="$deplist $sf" + fi ;; - esac + esac + if test "x$ignore_f" = xf ; then + extn=`echo $sf | $AWK -F. '{print $NF}'` + case $extn in + F) + echo " \\" >> srclist.inc + printf " $sf" >> srclist.inc + ;; + F90) + echo " \\" >> f90srclist.inc + printf " $sf" >> f90srclist.inc + ;; + c) + echo " \\" >> csrclist.inc + printf " $sf" >> csrclist.inc + ;; + h) + echo " \\" >> hlist.inc + printf " $sf" >> hlist.inc + ;; + flow) + echo " \\" >> ad_flow_files.inc + printf " $sf" >> ad_flow_files.inc + ;; + esac + fi fi fi done @@ -1846,11 +2318,15 @@ # These files are created by Makefile SPECIAL_FILES = ${PACKAGES_DOT_H} AD_CONFIG.h FC_NAMEMANGLE.h BUILD_INFO.h - EOF -# Note: figure out some way to add Hyades JAM libraries here - +if test "x$EMBED_SRC" = xt ; then + echo "EMBEDDED_FILES = EMBEDDED_FILES.h" >>$MAKEFILE +else + echo "EMBEDDED_FILES = " >>$MAKEFILE +fi + +# Note: figure out some way to add Hyades JAM libraries here cat >>$MAKEFILE <> $MAKEFILE echo >> $MAKEFILE echo 'F77FILES = $(SRCFILES:.F=.'$FS')' >> $MAKEFILE -echo 'F90FILES = $(F90SRCFILES:.F=.'$FS90')' >> $MAKEFILE +echo 'F90FILES = $(F90SRCFILES:.F90=.'$FS90')' >> $MAKEFILE echo 'OBJFILES = $(SRCFILES:.F=.o) $(CSRCFILES:.c=.o) $(F90SRCFILES:.F90=.o)' >> $MAKEFILE echo >> $MAKEFILE echo '.SUFFIXES:' >> $MAKEFILE @@ -1912,7 +2388,7 @@ cat >>$MAKEFILE <> \$(MAKEFILE) -rm -f makedepend.out +lib: libmitgcmuv.a + +libmitgcmuv.a: \$(OBJFILES) + ar rcv libmitgcmuv.a \$(OBJFILES) + links: \$(SRCFILES) \$(CSRCFILES) \$(HEADERFILES) \$(F90SRCFILES) \$(SPECIAL_FILES) small_f: \$(F77FILES) \$(F90FILES) @@ -1941,7 +2422,8 @@ -find \$(EXEDIR) -name "*.meta" -exec rm {} \; -find \$(EXEDIR) -name "*.data" -exec rm {} \; -find \$(EXEDIR) -name "fort.*" -exec rm {} \; - -rm -f \$(EXECUTABLE) output.txt STD* + -rm -f \$(EXECUTABLE) *.txt STD* *diagnostics.log datetime + -rm -rf mnc_test_* #eh3 Makefile: makefile makefile: @@ -1969,11 +2451,31 @@ test ! "x$THISDATE" = x && echo " -echo \"#define THISDATE '$THISDATE'\" >> \$@" >> $MAKEFILE test ! "x$THISHOST" = x && echo " -echo \"#define THISHOST '$THISHOST'\" >> \$@" >> $MAKEFILE +if test "x$EMBED_SRC" = xt ; then + cat >>$MAKEFILE <>$MAKEFILE < \$@ @@ -1984,7 +2486,7 @@ .$FS90.o: \$(F90C) \$(F90FLAGS) \$(F90OPTIM) -c \$< .c.o: - \$(CC) \$(CFLAGS) -c \$< + \$(CC) \$(CFLAGS) \$(DEFINES) \$(INCLUDES) -c \$< # Special exceptions that use the ( .F - .p - .$FS - .o ) rule-chain .F.p: @@ -2029,75 +2531,96 @@ # ... AD ... adall: ad_taf -adtaf: ad_taf_output.f -adtamc: ad_tamc_output.f +adtaf: ad_taf_output.$FS +adtamc: ad_tamc_output.$FS -ad_input_code.f: \$(AD_FILES) \$(HEADERFILES) +ad_input_code.$FS: \$(AD_FILES) \$(HEADERFILES) @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -DALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ad_config.template cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h -rm -f ad_config.template @make \$(F77FILES) @make \$(AD_FLOW_FILES) - cat \$(AD_FLOW_FILES) \$(AD_FILES) > ad_input_code.f + cat \$(AD_FLOW_FILES) \$(AD_FILES) > ad_input_code.$FS -ad_taf_output.f: ad_input_code.f - \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.f - cat ad_input_code_ad.f | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.f +ad_taf_output.$FS: ad_input_code.$FS + \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.$FS + cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.$FS adtafonly: - \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.f - cat ad_input_code_ad.f | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.f + \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.$FS + cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.$FS ad_taf: ad_taf_output.o \$(OBJFILES) \$(LINK) -o ${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_taf_output.o \$(LIBS) -ad_tamc_output.f: ad_input_code.f - \$(TAMC) \$(AD_TAMC_FLAGS) \$(TAMC_EXTRA) ad_input_code.f - cat ad_input_code_ad.f | sed -f \$(TOOLSDIR)/adjoint_sed > ad_tamc_output.f +ad_tamc_output.$FS: ad_input_code.$FS + \$(TAMC) \$(AD_TAMC_FLAGS) \$(TAMC_EXTRA) ad_input_code.$FS + cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_tamc_output.$FS ad_tamc: ad_tamc_output.o \$(OBJFILES) \$(LINK) -o ${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_tamc_output.o \$(LIBS) +adonlyfwd: + patch < \$(TOOLSDIR)/ad_taf_output.f.onlyfwd.diff + +adtrick: + patch < \$(TOOLSDIR)/ad_taf_output.f.adtrick.diff # ... FTL ... ftlall: ftl_taf -ftltaf: ftl_taf_output.f -ftltamc: ftl_tamc_output.f +ftltaf: ftl_taf_output.$FS +ftltamc: ftl_tamc_output.$FS -ftl_input_code.f: \$(AD_FILES) \$(HEADERFILES) +ftl_input_code.$FS: \$(AD_FILES) \$(HEADERFILES) @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ftl_config.template cmp ftl_config.template AD_CONFIG.h || cat ftl_config.template > AD_CONFIG.h -rm -f ftl_config.template @make \$(F77FILES) @make \$(AD_FLOW_FILES) - cat \$(AD_FLOW_FILES) \$(AD_FILES) > ftl_input_code.f + cat \$(AD_FLOW_FILES) \$(AD_FILES) > ftl_input_code.$FS -ftl_taf_output.f: ftl_input_code.f - \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.f - cat ftl_input_code_ftl.f | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.f +ftl_taf_output.$FS: ftl_input_code.$FS + \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.$FS + cat ftl_input_code_ftl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.$FS ftltafonly: - \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.f - cat ftl_input_code_ftl.f | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.f + \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.$FS + cat ftl_input_code_ftl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.$FS ftl_taf: ftl_taf_output.o \$(OBJFILES) \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_taf_output.o \$(LIBS) -ftl_tamc_output.f: ftl_input_code.f - \$(TAMC) \$(FTL_TAMC_FLAGS) \$(TAMC_EXTRA) ftl_input_code.f - cat ftl_input_code_ftl.f | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_tamc_output.f +ftl_tamc_output.$FS: ftl_input_code.$FS + \$(TAMC) \$(FTL_TAMC_FLAGS) \$(TAMC_EXTRA) ftl_input_code.$FS + cat ftl_input_code_ftl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_tamc_output.$FS ftl_tamc: ftl_tamc_output.o \$(OBJFILES) \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_tamc_output.o \$(LIBS) # ... SVD ... -svdtaf: ad_taf_output.f ftl_taf_output.f -svdall: svd_taf +svdtaf: ad_taf_output.$FS ftl_taf_output.$FS + @echo "--->>> Only ran TAF to generate SVD code! <<<---" + @echo "--->>> Do make svdall afterwards to compile. <<<---" +svdall: svd_touch svd_taf -svd_taf: ad_taf_output.o ftl_taf_output.o \$(OBJFILES) +svd_taf: \$(OBJFILES) \$(LINK) -o mitgcmuv_svd \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_taf_output.o ftl_taf_output.o \$(LIBS) + @echo "--->>> Only COMPILE svd code! <<<---" + @echo "--->>> Assumes you previously <<<---" + @echo "--->>> did make svdtaf <<<---" + +svd_touch: + @echo "--->>> Only COMPILE svd code! <<<---" + @echo "--->>> Assumes you previously <<<---" + @echo "--->>> did make svdtaf <<<---" + touch ad_taf_output.$FS ftl_taf_output.$FS + \$(FC) \$(FFLAGS) \$(FOPTIM) -c ad_taf_output.$FS + \$(FC) \$(FFLAGS) \$(FOPTIM) -c ftl_taf_output.$FS + @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ftl_config.template + cmp ftl_config.template AD_CONFIG.h || cat ftl_config.template > AD_CONFIG.h + -rm -f ftl_config.template #=========================================