--- MITgcm/tools/genmake2 2010/05/23 03:45:58 1.205 +++ MITgcm/tools/genmake2 2010/05/23 18:34:43 1.206 @@ -1,6 +1,6 @@ #! /usr/bin/env bash # -# $Header: /home/ubuntu/mnt/e9_copy/MITgcm/tools/genmake2,v 1.205 2010/05/23 03:45:58 jmc Exp $ +# $Header: /home/ubuntu/mnt/e9_copy/MITgcm/tools/genmake2,v 1.206 2010/05/23 18:34:43 jmc Exp $ # # Makefile generator for MITgcm UV codes # created by cnh 03/98 @@ -110,9 +110,9 @@ check_for_broken_Ff else cat <&1 -ERROR: Your file system cannot distinguish between *.F and *.f files - (fails the "cp" test) and this program cannot find a suitable - replacement extension. Please try a different build environment or +ERROR: Your file system cannot distinguish between *.F and *.f files + (fails the "cp" test) and this program cannot find a suitable + replacement extension. Please try a different build environment or contact the list for help. EOF @@ -146,9 +146,9 @@ check_for_broken_Ff else cat <&1 -ERROR: Your file system cannot distinguish between *.F and *.f files - (fails the "make/ln" test) and this program cannot find a suitable - replacement extension. Please try a different build environment or +ERROR: Your file system cannot distinguish between *.F and *.f files + (fails the "make/ln" test) and this program cannot find a suitable + replacement extension. Please try a different build environment or contact the list for help. EOF @@ -194,8 +194,8 @@ cat <> $MAKEFILE # THIS IS A TEST MAKEFILE GENERATED BY "genmake2" # -# Some "makedepend" implementations will die if they cannot -# find a Makefile -- so this file is here to gives them an +# Some "makedepend" implementations will die if they cannot +# find a Makefile -- so this file is here to gives them an # empty one to find and parse. EOF cat <> genmake_tc.f @@ -212,7 +212,7 @@ MAKEDEPEND=makedepend else echo " a system-default makedepend was not found." - + # Try to build the cyrus implementation build_cyrus_makedepend RETVAL=$? @@ -269,7 +269,7 @@ return 1 fi clist="cc gcc c89 $CC" - for ic in $clist ; do + for ic in $clist ; do comm="$ic -o encode_files encode_files.c" ( cd $ROOTDIR/tools/embed_encode && $comm ) > /dev/null 2>&1 RETVAL=$? @@ -304,7 +304,7 @@ echo $PLATFORM | grep cygwin > /dev/null 2>&1 && PLATFORM=cygwin_ia32 OFLIST=`(cd $ROOTDIR/tools/build_options; ls | grep "^$PLATFORM")` echo " The platform appears to be: $PLATFORM" - + echo "test" > test ln -s ./test link RETVAL=$? @@ -442,7 +442,7 @@ EOF exit 1 fi - + # # look for possible MPI libraries # mpi_libs= # mpi_fort=`which mpif77 2>/dev/null` @@ -461,7 +461,7 @@ # if test "x${RETVAL}" = x0 ; then # a=`cat out` # for i in $a ; do -# case $i in +# case $i in # -*) # mpi_libs="$mpi_libs $i" ;; # esac @@ -512,7 +512,7 @@ -optfile NAME | --optfile NAME | -of NAME | --of NAME -optfile=NAME | --optfile=NAME | -of=NAME | --of=NAME Use "NAME" as the optfile. By default, an attempt will be - made to find an appropriate "standard" optfile in the + made to find an appropriate "standard" optfile in the tools/build_options/ directory. -pdepend NAME | --pdepend NAME @@ -528,7 +528,7 @@ -make NAME | -m NAME --make=NAME | -m=NAME - Use "NAME" for the MAKE program. The default is "make" but + Use "NAME" for the MAKE program. The default is "make" but many platforms, "gmake" is the preferred choice. -makefile NAME | -mf NAME @@ -542,47 +542,47 @@ -rootdir NAME | --rootdir NAME | -rd NAME | --rd NAME -rootdir=NAME | --rootdir=NAME | -rd=NAME | --rd=NAME Specify the location of the MITgcm ROOTDIR as "NAME". - By default, genamke will try to find the location by + By default, genamke will try to find the location by looking in parent directories (up to the 5th parent). -mods NAME | --mods NAME | -mo NAME | --mo NAME -mods=NAME | --mods=NAME | -mo=NAME | --mo=NAME - Here, "NAME" specifies a list of directories that are - used for additional source code. Files found in the - "mods list" are given preference over files of the same + Here, "NAME" specifies a list of directories that are + used for additional source code. Files found in the + "mods list" are given preference over files of the same name found elsewhere. -disable NAME | --disable NAME -disable=NAME | --disable=NAME - Here "NAME" specifies a list of packages that we don't - want to use. If this violates package dependencies, + Here "NAME" specifies a list of packages that we don't + want to use. If this violates package dependencies, genamke will exit with an error message. -enable NAME | --enable NAME -enable=NAME | --enable=NAME - Here "NAME" specifies a list of packages that we wish - to specifically enable. If this violates package + Here "NAME" specifies a list of packages that we wish + to specifically enable. If this violates package dependencies, genamke will exit with an error message. -standarddirs NAME | --standarddirs NAME -standarddirs=NAME | --standarddirs=NAME - Here, "NAME" specifies a list of directories to be + Here, "NAME" specifies a list of directories to be used as the "standard" code. -fortran NAME | --fortran NAME | -fc NAME | --fc NAME -fc=NAME | --fc=NAME - Use "NAME" as the fortran compiler. By default, genmake + Use "NAME" as the fortran compiler. By default, genmake will search for a working compiler by trying a list of "usual suspects" such as g77, f77, etc. -cc NAME | --cc NAME | -cc=NAME | --cc=NAME - Use "NAME" as the C compiler. By default, genmake + Use "NAME" as the C compiler. By default, genmake will search for a working compiler by trying a list of "usual suspects" such as gcc, c89, cc, etc. -[no]ieee | --[no]ieee - Do or don't use IEEE numerics. Note that this option - *only* works if it is supported by the OPTFILE that + Do or don't use IEEE numerics. Note that this option + *only* works if it is supported by the OPTFILE that is being used. -use_real4 | -use_r4 | -ur4 | --use_real4 | --use_r4 | --ur4 @@ -591,8 +591,8 @@ -ignoretime | -ignore_time | --ignoretime | --ignore_time Ignore all the "wall clock" routines entirely. This will - not in any way hurt the model results -- it simply means - that the code that checks how long the model spends in + not in any way hurt the model results -- it simply means + that the code that checks how long the model spends in various routines will give junk values. -ts | --ts @@ -628,11 +628,11 @@ Activate OpenMP code + use Compiler option OMPFLAG -es | --es | -embed-source | --embed-source - Embed a tarball containing the full source code - (including the Makefile, etc.) used to build the + Embed a tarball containing the full source code + (including the Makefile, etc.) used to build the executable [off by default] - While it is most often a single word, the "NAME" variables specified + While it is most often a single word, the "NAME" variables specified above can in many cases be a space-delimited string such as: --enable pkg1 --enable 'pkg1 pkg2' --enable 'pkg1 pkg2 pkg3' @@ -659,7 +659,7 @@ fi default_nm="#define FC_NAMEMANGLE(X) X ## _" - + cat > genmake_test.c < /dev/null 2>&1 ckE=$? -if test $ckM = 0 -a $ckE = 1 ; then +if test $ckM = 0 -a $ckE = 1 ; then STANDARDDIRS="$STANDARDDIRS eesupp" fi @@ -1931,7 +1931,7 @@ get_pdepend_list $PDEPEND # Search for default packages. Note that a "$ROOTDIR/pkg/pkg_groups" -# file has been added so that, for convenience, one can specify +# file has been added so that, for convenience, one can specify # groups of packages using names like "ocean" and "atmosphere". echo " checking default package list: " if test "x${PDEFAULT}" = x ; then @@ -2011,12 +2011,12 @@ rm -f ./.tmp_pack echo " packages are: $PACKAGES" -# Check for package MNC: if NetCDF is available, then build the MNC +# Check for package MNC: if NetCDF is available, then build the MNC # template files ; otherwise, delete mnc from the list of packages. echo " $PACKAGES " | grep ' mnc ' > /dev/null 2>&1 -RETVAL=$? -if test "x$RETVAL" = x0 ; then - if test "x$HAVE_NETCDF" != xt ; then +mnc_in=$? +if test "x$HAVE_NETCDF" != xt ; then + if test "x$mnc_in" = x0 ; then cat < make_mnc.errors 2>&1 - RETVAL=$? - if test "x${RETVAL}" = x0 ; then - rm -f make_mnc.errors + # this prevent to add mnc (due to pdepend rules) if not available + DISABLE="$DISABLE mnc" + fi +else + # we have NetCDF, we try to build MNC template files + ( cd $ROOTDIR"/pkg/mnc" && $MAKE testclean && $MAKE templates ) > make_mnc.errors 2>&1 + RETVAL=$? + if test "x${RETVAL}" = x0 ; then + rm -f make_mnc.errors + else + echo "Error: problem encountered while building source files in pkg/mnc:" + cat make_mnc.errors 1>&2 + if test "x$mnc_in" = x0 ; then + exit 1 else - echo "Error: problem encountered while building source files in pkg/mnc:" - cat make_mnc.errors 1>&2 - exit 1 + DISABLE="$DISABLE mnc" fi fi fi # Check for package PROFILES: if NetCDF is not available, # then delete profiles from the list of available packages. -echo " $PACKAGES " | grep ' profiles ' > /dev/null 2>&1 -RETVAL=$? -if test "x$RETVAL" = x0 ; then - if test "x$HAVE_NETCDF" != xt ; then +if test "x$HAVE_NETCDF" != xt ; then + echo " $PACKAGES " | grep ' profiles ' > /dev/null 2>&1 + RETVAL=$? + if test "x$RETVAL" = x0 ; then cat <> F77srclist.tmp printf " $sf" >> F77srclist.tmp - if test "x$OPENAD" != x ; then + if test "x$OPENAD" != x ; then basename=${sf%%.F} isAD=`egrep ^$basename.f'[ ]*' adSrcFiles.tmp` - if test -z "$isAD" ; then + if test -z "$isAD" ; then toBeIgnored=`egrep ^$basename'[ ]*' ${OAD_DONT_COMPILE}` - if test -z "$toBeIgnored" ; then + if test -z "$toBeIgnored" ; then echo " \\" >> nonADF77srclist.tmp printf " $sf" >> nonADF77srclist.tmp - else + else echo " not to be compiled : $sf" fi - else # file is initially listed as an AD file we want to exclude it + else # file is initially listed as an AD file we want to exclude it # or we want to retain the untransformed version notToBeTransformed=`egrep ^$basename'[ ]*' ${OAD_DONT_TRANSFORM}` untransformedVersionToBeKept=`egrep ^$basename'[ ]*' ${OAD_KEEP_ORIGINAL}` - if test -n "$notToBeTransformed"; then + if test -n "$notToBeTransformed"; then echo " not to be transformed: $sf" fi if test -n "$untransformedVersionToBeKept" ; then echo " original to be kept : $sf" - fi + fi if test -n "$notToBeTransformed" -o -n "$untransformedVersionToBeKept" ; then echo " \\" >> nonADF77srclist.tmp printf " $sf" >> nonADF77srclist.tmp @@ -2760,7 +2771,7 @@ #=== Automatic Differentiation Rules === #=== for TAMC/TAF ====================== -if test "x$OPENAD" = x ; then +if test "x$OPENAD" = x ; then cat >>$MAKEFILE < ad_taf_output.$FS \${EXE_AD}: ad_taf_output.o \$(OBJFILES) - \$(LINK) -o \${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_taf_output.o \$(LIBS) + \$(LINK) -o \${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_taf_output.o \$(LIBS) ad_tamc_output.$FS: ad_input_code.$FS \$(TAMC) \$(AD_TAMC_FLAGS) \$(TAMC_EXTRA) ad_input_code.$FS cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_tamc_output.$FS ad_tamc: ad_tamc_output.o \$(OBJFILES) - \$(LINK) -o ${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_tamc_output.o \$(LIBS) + \$(LINK) -o ${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_tamc_output.o \$(LIBS) adonlyfwd: patch < \$(TOOLSDIR)/ad_taf_output.f.onlyfwd.diff - + adtrick: patch < \$(TOOLSDIR)/ad_taf_output.f.adtrick.diff @@ -2859,14 +2870,14 @@ cat ftl_input_code_ftl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.$FS ftl_taf: ftl_taf_output.o \$(OBJFILES) - \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_taf_output.o \$(LIBS) + \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_taf_output.o \$(LIBS) ftl_tamc_output.$FS: ftl_input_code.$FS \$(TAMC) \$(FTL_TAMC_FLAGS) \$(TAMC_EXTRA) ftl_input_code.$FS cat ftl_input_code_ftl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_tamc_output.$FS ftl_tamc: ftl_tamc_output.o \$(OBJFILES) - \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_tamc_output.o \$(LIBS) + \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_tamc_output.o \$(LIBS) # ... SVD ... @@ -2895,17 +2906,17 @@ EOF -fi +fi #=== for OpenAD ======================== -if test "x$OPENAD" != x ; then +if test "x$OPENAD" != x ; then # ============ begin OpenAD specific section ============== cat >>$MAKEFILE <>$MAKEFILE < \$@ -f95_test.f90: all_mods.xb.x2w.w2f.pp.f$FS90 \$(NON_AD_F77_SRC_FILES:.F=_cb2m.f$FS90) ad_input_code.w2f.pre.xb.x2w.w2f.td.pp.f$FS90 +f95_test.f90: all_mods.xb.x2w.w2f.pp.f$FS90 \$(NON_AD_F77_SRC_FILES:.F=_cb2m.f$FS90) ad_input_code.w2f.pre.xb.x2w.w2f.td.pp.f$FS90 cat \$^ > \$@ f95_test.out: f95_test_mods.f90 f95_test.f90 f95 -fixed -w=unused -maxcontin=132 -c f95_test_mods.f90 > \$@ 2>&1 f95 -fixed -w=unused -maxcontin=132 -c -fixed f95_test.f90 >> \$@ 2>&1 -# the file included below is created by the -# postProcessor and its inclusion sets the +# the file included below is created by the +# postProcessor and its inclusion sets the # variable POSTPROCESSEDFILES -# used below. Because the file is made during -# make it won't be read until the second (recursive) +# used below. Because the file is made during +# make it won't be read until the second (recursive) # invocation in the rule below -include postProcess.make @@ -3021,12 +3032,12 @@ openad: ad_input_code.w2f.pre.xb.x2w.w2f.td.pp.f$FS90 .PHONY: openad -# create the module files -%_mod.FF90 : %.h ../OAD_support/cb2mGetModules.csh ../OAD_support/cb2mGetModules.awk +# create the module files +%_mod.FF90 : %.h ../OAD_support/cb2mGetModules.csh ../OAD_support/cb2mGetModules.awk ../OAD_support/cb2mGetModules.csh $< ../OAD_support/cb2mGetModules.awk -# create the header files -%_mod.h : %.h ../OAD_support/cb2mGetHeaders.csh ../OAD_support/cb2mGetHeaders.awk +# create the header files +%_mod.h : %.h ../OAD_support/cb2mGetHeaders.csh ../OAD_support/cb2mGetHeaders.awk ../OAD_support/cb2mGetHeaders.csh $< ../OAD_support/cb2mGetHeaders.awk \$(CB2M_F90_SRC_NAMES) # change everybody else to use the new module files: @@ -3048,18 +3059,18 @@ ad_input_code.f$FS90: \$(CB2M_AD_FILES) cat \$^ > \$@ -# strip all comments and blanks to reduce -# the file size in order to reduce perl's memory requirements -ad_input_code_sf.f$FS90 : ad_input_code.f$FS90 +# strip all comments and blanks to reduce +# the file size in order to reduce perl's memory requirements +ad_input_code_sf.f$FS90 : ad_input_code.f$FS90 cat \$^ | sed -f ../OAD_support/strip.sed | sed -f ../OAD_support/stop2print.sed > \$@ # mfef90 preprocessing -# expand statement functions -# expose mfef90 specific substring handling +# expand statement functions +# expose mfef90 specific substring handling # add the w2f__types module ad_input_code_sf.w2f.f$FS90: ad_input_code_sf.f$FS90 mfef90 whirl2f whirl2f_be w2f__types.f90 - ./mfef90 -r8 -z -F -N132 \$< - mv \$<.B \$(basename \$<).B + ./mfef90 -r8 -z -F -N132 \$< + mv \$<.B \$(basename \$<).B ./whirl2f -openad \$(basename \$<).B cat w2f__types.f90 \$(basename \$<).w2f.f > \$@ @@ -3068,10 +3079,10 @@ ./preProcess.py --timing --r8 -H -S \$< -o \$@ # F -> WHIRL -# note that the canonicalized version cuts off at col 72 -# doing this also for string constants which is ok as long -# as we are in fixed mode and cut of exactly there. -# Otherwise mfef90 patches in spaces to fill up to 72 (or 132) +# note that the canonicalized version cuts off at col 72 +# doing this also for string constants which is ok as long +# as we are in fixed mode and cut of exactly there. +# Otherwise mfef90 patches in spaces to fill up to 72 (or 132) # characters respectively. ad_input_code_sf.w2f.pre.B: ad_input_code_sf.w2f.pre.f$FS90 mfef90 ./mfef90 -r8 -z -F \$< @@ -3091,7 +3102,7 @@ # WHIRL' -> F' ad_input_code_sf.w2f.pre.xb.x2w.w2f.f$FS90: ad_input_code_sf.w2f.pre.xb.x2w.B whirl2f whirl2f_be - ./whirl2f -FLIST:ftn_file=\$@ -openad \$< + ./whirl2f -FLIST:ftn_file=\$@ -openad \$< # insert template directives ad_input_code_sf.w2f.pre.xb.x2w.w2f.td.f$FS90: ad_input_code_sf.w2f.pre.xb.x2w.w2f.f$FS90 ../OAD_support/insertTemplateDir.bash @@ -3100,10 +3111,10 @@ PPEXTRAS=\$(wildcard ../OAD_support/ad_template.*.F) ../OAD_support/ad_inline.F # postprocess F' postProcess.tag: ad_input_code_sf.w2f.pre.xb.x2w.w2f.td.f$FS90 postProcess.py \$(PPEXTRAS:.F=.f) - # the target is a placeholder to signal execution of the rule + # the target is a placeholder to signal execution of the rule touch \$@ - # this step also creates the file postProcess.make but we cannot - # name it as the target or else make will try to remake it for + # this step also creates the file postProcess.make but we cannot + # name it as the target or else make will try to remake it for # the include directive above for any rule, e.g. make clean ./postProcess.py --progress --timing --outputFormat=fixed -m r -i ../OAD_support/ad_inline.f --width 4 \$< @@ -3111,17 +3122,17 @@ %.xsd: \$(LN) \${XAIFSCHEMAROOT}/schema/\$@ . -mfef90: +mfef90: \$(LN) \${OPEN64ROOT}/crayf90/sgi/mfef90 . # link the support files: -\$(OPENAD_SUPPORT_F90_SRC_FILES) \$(OPENAD_SUPPORT_C_SRC_FILES): +\$(OPENAD_SUPPORT_F90_SRC_FILES) \$(OPENAD_SUPPORT_C_SRC_FILES): \$(LN) ../OAD_support/\$@ . -whirl2xaif xaif2whirl: +whirl2xaif xaif2whirl: \$(LN) \${OPENADFORTTK}/bin/\$@ . -preProcess.py postProcess.py: +preProcess.py postProcess.py: \$(LN) \${OPENADFORTTK_BASE}/tools/SourceProcessing/\$@ . whirl2f whirl2f_be: @@ -3175,7 +3186,7 @@ printf "\n=== Done ===\n" # Create special header files -$BASH $TOOLSDIR/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bPACKAGES_CONFIG_H "Disabled packages:" $DISABLED_PACKAGES " " "Enabled packages:" $ENABLED_PACKAGES > $PACKAGES_DOT_H".tmp" +$BASH $TOOLSDIR/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bPACKAGES_CONFIG_H "Disabled packages:" $DISABLED_PACKAGES " " "Enabled packages:" $ENABLED_PACKAGES > $PACKAGES_DOT_H".tmp" if test ! -f $PACKAGES_DOT_H ; then mv -f $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H else