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revision 1.18 by edhill, Tue Oct 21 20:42:16 2003 UTC revision 1.73 by edhill, Tue Mar 16 18:20:34 2004 UTC
# Line 1  Line 1 
1  #!/bin/bash  #! /usr/bin/env bash
2  #  #
3  # $Header$  # $Header$
4  #  #
# Line 13  Line 13 
13  test_for_package_in_cpp_options() {  test_for_package_in_cpp_options() {
14      cpp_options=$1      cpp_options=$1
15      pkg=$2      pkg=$2
16      grep -i "#define.*ALLOW_$pkg" $cpp_options > /dev/null 2>&1      test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_$pkg" || exit 99
17      RETVAL=$?      test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_$pkg" || exit 99
18      if test "x${RETVAL}" = x0 ; then      test_for_string_in_file $cpp_options "^[ ]*#define.*DISABLE_$pkg" || exit 99
19          echo "Error: In $cpp_options there is an illegal line: #define ALLOW_$pkg"      test_for_string_in_file $cpp_options "^[ ]*#undef.*DISABLE_$pkg" || exit 99
20          exit 99  }
21      fi  
22      grep -i "#undef.*ALLOW_$pkg" $cpp_options > /dev/null 2>&1  # Search for particular CPP #cmds associated with MPI
23      RETVAL=$?  # usage: test_for_mpi_in_cpp_eeoptions CPP_file
24      if test "x${RETVAL}" = x0 ; then  test_for_mpi_in_cpp_eeoptions() {
25          echo "Error: In $cpp_options there is an illegal line: #undef ALLOW_$pkg"      cpp_options=$1
26          exit 99      test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_USE_MPI" || exit 99
27      fi      test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_USE_MPI" || exit 99
28      grep -i "#define.*DISABLE_$pkg" $cpp_options > /dev/null 2>&1      test_for_string_in_file $cpp_options "^[ ]*#define.*ALWAYS_USE_MPI" || exit 99
29        test_for_string_in_file $cpp_options "^[ ]*#undef.*ALWAYS_USE_MPI" || exit 99
30    }
31    
32    # Search for particular string in a file. Return 1 if detected, 0 if not
33    # usage: test_for_string_in_file file string
34    test_for_string_in_file() {
35        file=$1
36        strng=$2
37        grep -i "$strng" $file > /dev/null 2>&1
38      RETVAL=$?      RETVAL=$?
39      if test "x${RETVAL}" = x0 ; then      if test "x${RETVAL}" = x0 ; then
40          echo "Error: In $cpp_options there is an illegal line: #define DISABLE_$pkg"          printf "Error: In $file there is an illegal line: "
41          exit 99          grep -i "$strng" $file
42            return 1
43      fi      fi
44      grep -i "#undef.*DISABLE_$pkg" $cpp_options > /dev/null 2>&1      return 0
     RETVAL=$?  
     if test "x${RETVAL}" = x0 ; then  
         echo "Error: In $cpp_options there is an illegal line: #undef DISABLE_$pkg"  
         exit 99  
    fi  
45  }  }
46    
47  # Read the $ROOTDIR/pkg/pkg_groups file and expand any references to  # Read the $ROOTDIR/pkg/pkg_groups file and expand any references to
# Line 72  find_possible_configs()  { Line 77  find_possible_configs()  {
77    
78      tmp1=`uname`"_"`uname -m`      tmp1=`uname`"_"`uname -m`
79      tmp2=`echo $tmp1 | sed -e 'y/ABCDEFGHIJKLMNOPQRSTUVWXYZ/abcdefghijklmnopqrstuvwxyz/'`      tmp2=`echo $tmp1 | sed -e 'y/ABCDEFGHIJKLMNOPQRSTUVWXYZ/abcdefghijklmnopqrstuvwxyz/'`
80      PLATFORM=`echo $tmp2 | sed -e 's/i[3-6]86/ia32/' | sed -e 's/athlon/ia32/'`      tmp3=`echo $tmp2 | sed -e 's/power macintosh/ppc/'`
81        tmp1=`echo $tmp3 | sed -e 's|x86_64|amd64|'`
82        tmp2=`echo $tmp1 | sed -e 's/i[3-6]86/ia32/' | sed -e 's/athlon/ia32/'`
83        tmp3=`echo $tmp2 | sed -e 's/cray sv1/craysv1/'`
84        PLATFORM=$tmp3
85      OFLIST=`(cd $ROOTDIR/tools/build_options; ls | grep "^$PLATFORM")`      OFLIST=`(cd $ROOTDIR/tools/build_options; ls | grep "^$PLATFORM")`
86      echo "  The platform appears to be:  $PLATFORM"      echo "  The platform appears to be:  $PLATFORM"
 #     if test "x$OFLIST" = x ; then  
 #       echo "  No pre-defined options files were found matching this platform"  
 #       echo "  but examples for other platforms can be found in:"  
 #       echo "    $ROOTDIR/tools/build_options"  
 #     else  
 #       echo "  Options files (located in $ROOTDIR/tools/build_options) that"  
 #       echo "  may work with this machine are:"  
 #       for i in $OFLIST ; do  
 #           echo "    $i"  
 #       done  
 #     fi  
87            
88      echo "test" > test      echo "test" > test
89      ln -s ./test link      ln -s ./test link
# Line 103  find_possible_configs()  { Line 101  find_possible_configs()  {
101          CPP="cpp -traditional -P"          CPP="cpp -traditional -P"
102      fi      fi
103    
104        #  The "original" makedepend is part of the Imake system that is
105        #  most often distributed with XFree86 or with an XFree86 source
106        #  package.  As a result, many machines (eg. generic Linux) do not
107        #  have a system-default "makedepend" available.  For those
108        #  systems, we have two fall-back options:
109        #
110        #    1) a makedepend implementation shipped with the cyrus-imapd
111        #       package:  ftp://ftp.andrew.cmu.edu/pub/cyrus-mail/
112        #
113        #    2) a known-buggy xmakedpend shell script
114        #
115        #  So the choices are, in order:
116        #
117        #    1) use the user-specified program
118        #    2) use a system-wide default
119        #    3) locally build and use the cyrus implementation
120        #    4) fall back to the buggy local xmakedpend script
121        #
122        if test "x${MAKEDEPEND}" = x ; then
123          which makedepend > /dev/null 2>&1
124          RETVAL=$?
125          if test ! "x${RETVAL}" = x0 ; then
126             echo "    a system-default makedepend was not found."
127    
128             #  Try to build the cyrus impl
129             rm -f ./genmake_cy_md
130             (
131                 cd $ROOTDIR/tools/cyrus-imapd-makedepend  \
132                     &&  ./configure > /dev/null 2>&1  \
133                     &&  make > /dev/null 2>&1  \
134                     &&  ./makedepend ifparser.c > /dev/null 2>&1  \
135                     &&  echo "true"
136             ) > ./genmake_cy_md
137             grep true ./genmake_cy_md > /dev/null 2>&1
138             RETVAL=$?
139             if test "x$RETVAL" = x0 ; then
140                 MAKEDEPEND='$(TOOLSDIR)/cyrus-imapd-makedepend/makedepend'
141             else
142                 MAKEDEPEND='$(TOOLSDIR)/xmakedepend'
143             fi
144             rm -f ./genmake_cy_md
145          fi
146        fi
147    
148      # look for possible fortran compilers      # look for possible fortran compilers
149      tmp="$MITGCM_FC $FC g77 f77 pgf77 pgf95 ifc f90 f95 mpif77 mpf77 mpxlf95"      tmp="$MITGCM_FC $FC efc g77 f77 pgf77 pgf95 ifc f90 f95 mpif77 mpf77 mpxlf95"
150      p_FC=      p_FC=
151      for c in $tmp ; do      for c in $tmp ; do
152          rm -f ./hello.f ./hello          rm -f ./hello.f ./hello
# Line 121  EOF Line 163  EOF
163              p_FC="$p_FC $c"              p_FC="$p_FC $c"
164          fi          fi
165      done      done
166        rm -f ./hello.f ./hello
167      if test "x${p_FC}" = x ; then      if test "x${p_FC}" = x ; then
168          cat 1>&2 <<EOF          cat 1>&2 <<EOF
169    
# Line 137  EOF Line 180  EOF
180          echo "   "$p_FC          echo "   "$p_FC
181          if test "x$FC" = x ; then          if test "x$FC" = x ; then
182              FC=`echo $p_FC | $AWK '{print $1}'`              FC=`echo $p_FC | $AWK '{print $1}'`
183                echo "  Setting FORTRAN compiler to: "$FC
184          fi          fi
185      fi      fi
186    
187      for i in $p_FC ; do      if test "x$OPTFILE" = x ; then
188          p_OF=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$i          OPTFILE=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$FC
189          if test -r $p_OF ; then          if test ! -r $OPTFILE ; then
190              OPTFILE=$p_OF               echo "  I looked for the file "$OPTFILE" but did not find it"
191              echo "  The options file:  $p_OF"          fi
192              echo "    appears to match so we'll use it."      fi
193              break  #    echo "  The options file:  $p_OF"
194          fi  #    echo "    appears to match so we'll use it."
195      done  #   for i in $p_FC ; do
196    #p_OF=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$i
197    #if test -r $p_OF ; then
198    #    OPTFILE=$p_OF
199    #    echo "  The options file:  $p_OF"
200    #    echo "    appears to match so we'll use it."
201    #    break
202    #fi
203    #   done
204      if test "x$OPTFILE" = x ; then      if test "x$OPTFILE" = x ; then
205          cat 1>&2 <<EOF          cat 1>&2 <<EOF
206    
# Line 204  get_pdepend_list()  { Line 256  get_pdepend_list()  {
256      cat $1 | sed -e 's/#.*$//g' \      cat $1 | sed -e 's/#.*$//g' \
257          | $AWK 'BEGIN{nn=0;} (NF>0){ for(i=2;i<=NF;i++){nn++; print "PNAME["nn"]="$1"\nDNAME["nn"]="$i} }' \          | $AWK 'BEGIN{nn=0;} (NF>0){ for(i=2;i<=NF;i++){nn++; print "PNAME["nn"]="$1"\nDNAME["nn"]="$i} }' \
258          > ./.pd_tmp          > ./.pd_tmp
259      source ./.pd_tmp      . ./.pd_tmp
260      rm -f ./.pd_tmp      rm -f ./.pd_tmp
261    
262      echo -n "PNAME = "${}      printf "PNAME = "${}
263  }  }
264    
265    
266  #  Explain usage  #  Explain usage
267  usage()  {  usage()  {
268      echo  cat <<EOF
269      echo "Usage: "$0" [OPTIONS]"  
270      echo "  where [OPTIONS] can be:"  Usage: "$0" [OPTIONS]
271      echo    where [OPTIONS] can be:
272      echo "    -help | --help | -h | --h"  
273      echo "    -nooptfile | --nooptfile"      -help | --help | -h | --h
274      echo "      -optfile NAME | --optfile NAME | -of NAME | --of NAME"            Print this help message and exit.
275      echo "      -optfile=NAME | --optfile=NAME | -of=NAME | --of=NAME"  
276      echo "    -pdepend NAME | --pdepend NAME"      -nooptfile | --nooptfile
277      echo "      -pdepend=NAME | --pdepend=NAME"        -optfile NAME | --optfile NAME | -of NAME | --of NAME
278      echo "    -pdefault NAME | --pdefault NAME"        -optfile=NAME | --optfile=NAME | -of=NAME | --of=NAME
279      echo "      -pdefault=NAME | --pdefault=NAME"            Use "NAME" as the optfile.  By default, an attempt will be
280      echo "    -make NAME | -m NAME"            made to find an appropriate "standard" optfile in the
281      echo "      --make=NAME | -m=NAME"            tools/build_options/ directory.
282      echo "    -makefile NAME | -mf NAME"  
283      echo "      --makefile=NAME | -mf=NAME"      -pdepend NAME | --pdepend NAME
284      echo "    -platform NAME | --platform NAME | -pl NAME | --pl NAME"        -pdepend=NAME | --pdepend=NAME
285      echo "      -platform=NAME | --platform=NAME | -pl=NAME | --pl=NAME"            Get package dependency information from "NAME".
286      echo "    -rootdir NAME | --rootdir NAME | -rd NAME | --rd NAME"  
287      echo "      -rootdir=NAME | --rootdir=NAME | -rd=NAME | --rd=NAME"      -pdefault NAME | --pdefault NAME
288      echo "    -mods NAME | --mods NAME | -mo NAME | --mo NAME"        -pdefault=NAME | --pdefault=NAME
289      echo "      -mods=NAME | --mods=NAME | -mo=NAME | --mo=NAME"            Get the default package list from "NAME".
290      echo "    -disable NAME | --disable NAME"  
291      echo "      -disable=NAME | --disable=NAME"      -make NAME | -m NAME
292      echo "    -enable NAME | --enable NAME"        --make=NAME | -m=NAME
293      echo "      -enable=NAME | --enable=NAME"            Use "NAME" for the MAKE program. The default is "make" but
294      echo "    -standarddirs NAME | --standarddirs NAME"            many platforms, "gmake" is the preferred choice.
295      echo "      -standarddirs=NAME | --standarddirs=NAME"  
296      echo "    -noopt NAME | --noopt NAME"      -makefile NAME | -mf NAME
297      echo "      -noopt=NAME | --noopt=NAME"        --makefile=NAME | -mf=NAME
298  #    echo "    -cpp NAME | --cpp NAME"            Call the makefile "NAME".  The default is "Makefile".
299  #    echo "      -cpp=NAME | --cpp=NAME"  
300      echo "    -fortran NAME | --fortran NAME | -fc NAME | --fc NAME"      -makedepend NAME | -md NAME
301      echo "      -fc=NAME | --fc=NAME"        --makedepend=NAME | -md=NAME
302      echo "    -[no]ieee | --[no]ieee"            Use "NAME" for the MAKEDEPEND program.
303      echo "    -[no]mpi | --[no]mpi"  
304      echo "    -[no]jam | --[no]jam"      -rootdir NAME | --rootdir NAME | -rd NAME | --rd NAME
305      echo        -rootdir=NAME | --rootdir=NAME | -rd=NAME | --rd=NAME
306      echo "  and NAME is a string such as:"            Specify the location of the MITgcm ROOTDIR as "NAME".
307      echo            By default, genamke will try to find the location by
308      echo "    --enable pkg1   --enable 'pkg1 pkg2'   --enable 'pkg1 pkg2 pkg3'"            looking in parent directories (up to the 5th parent).
309      echo "    -mods=dir1   -mods='dir1'   -mods='dir1 dir2 dir3'"  
310      echo "    -foptim='-Mvect=cachesize:512000,transform -xtypemap=real:64,double:64,integer:32'"      -mods NAME | --mods NAME | -mo NAME | --mo NAME
311      echo        -mods=NAME | --mods=NAME | -mo=NAME | --mo=NAME
312      echo "  which, depending upon your shell, may need to be single-quoted"            Here, "NAME" specifies a list of directories that are
313      echo "  if it contains spaces, dashes, or other special characters."            used for additional source code.  Files found in the
314              "mods list" are given preference over files of the same
315              name found elsewhere.
316    
317        -disable NAME | --disable NAME
318          -disable=NAME | --disable=NAME
319              Here "NAME" specifies a list of packages that we don't
320              want to use.  If this violates package dependencies,
321              genamke will exit with an error message.
322    
323        -enable NAME | --enable NAME
324          -enable=NAME | --enable=NAME
325              Here "NAME" specifies a list of packages that we wish
326              to specifically enable.  If this violates package
327              dependencies, genamke will exit with an error message.
328    
329        -standarddirs NAME | --standarddirs NAME
330          -standarddirs=NAME | --standarddirs=NAME
331              Here, "NAME" specifies a list of directories to be
332              used as the "standard" code.
333    
334        -fortran NAME | --fortran NAME | -fc NAME | --fc NAME
335          -fc=NAME | --fc=NAME
336              Use "NAME" as the fortran compiler.  By default, genmake
337              will search for a working compiler by trying a list of
338              "usual suspects" such as g77, f77, etc.
339    
340        -[no]ieee | --[no]ieee
341              Do or don't use IEEE numerics.  Note that this option
342              *only* works if it is supported by the OPTFILE that
343              is being used.
344    
345        -mpi | --mpi
346              Include MPI header files and link to MPI libraries
347        -mpi=PATH | --mpi=PATH
348              Include MPI header files and link to MPI libraries using MPI_ROOT
349              set to PATH. i.e. Include files from $PATH/include, link to libraries
350              from $PATH/lib and use binaries from $PATH/bin.
351    
352        -bash NAME
353              Explicitly specify the Bourne or BASH shell to use
354    
355      While it is most often a single word, the "NAME" variables specified
356      above can in many cases be a space-delimited string such as:
357    
358        --enable pkg1   --enable 'pkg1 pkg2'   --enable 'pkg1 pkg2 pkg3'
359        -mods=dir1   -mods='dir1'   -mods='dir1 dir2 dir3'
360        -foptim='-Mvect=cachesize:512000,transform -xtypemap=real:64,double:64,integer:32'
361    
362      which, depending upon your shell, may need to be single-quoted.
363    
364      For more detailed genmake documentation, please see:
365    
366        http://mitgcm.org/devel_HOWTO/
367    
368    EOF
369    
370      exit 1      exit 1
371  }  }
372    
373  #eh3 # This is the generic configuration.  #  Build a CPP macro to automate calling C routines from FORTRAN
374  #eh3 set LN         = ( 'ln -s' )  get_fortran_c_namemangling()  {
375  #eh3 set CPP        = ( '/lib/cpp -P' )      default_nm="#define FC_NAMEMANGLE(X) X ## _"
376  #eh3 set S64        = ( '$(TOOLSDIR)/set64bitConst.sh' )      
377  #eh3 set KPP        = (  )      cat > genmake_test.c <<EOF
378  #eh3 set FC         = ( 'f77' )  void tcall( char * string ) { tsub( string ); }
379  #eh3 set LINK       = $FC  EOF
380  #eh3 set MAKEDEPEND = ( 'makedepend' )      $MAKE genmake_test.o >> genmake_warnings 2>&1
381  #eh3 set INCLUDES   = ( -I. )      RETVAL=$?
382  #eh3 set FFLAGS     = (  )      if test "x$RETVAL" != x0 ; then
383  #eh3 set FOPTIM     = (  )          FC_NAMEMANGLE=$default_nm
384  #eh3 set CFLAGS     = (  )          cat <<EOF>> genmake_errors
385  #eh3 set KFLAGS1    = (  )  
386  #eh3 set KFLAGS2    = (  )  WARNING: C test compile fails
387  #eh3 set LIBS       = (  )  WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
388  #eh3 set KPPFILES   = (  )  WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here
389  #eh3 if (! $?NOOPTFILES ) set NOOPTFILES = (  )  EOF
390  #eh3 if (! $?NOOPTFLAGS ) set NOOPTFLAGS = (  )          return 1
391        fi
392        c_tcall=`nm genmake_test.o | grep 'T ' | grep tcall | cut -d ' ' -f 3`
393        RETVAL=$?
394        if test "x$RETVAL" != x0 ; then
395            FC_NAMEMANGLE=$default_nm
396            cat <<EOF>> genmake_warnings
397    
398    WARNING: The "nm" command failed.
399    WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
400    WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here
401    EOF
402            return 1
403        fi
404        cat > genmake_tcomp.f <<EOF
405          subroutine tcall( string )
406          character*(*) string
407          call tsub( string )
408          end
409    EOF
410        $FC $FFLAGS $DEFINES -c genmake_tcomp.f >> genmake_warnings 2>&1
411        RETVAL=$?
412        if test "x$RETVAL" != x0 ; then
413            FC_NAMEMANGLE=$default_nm
414            cat <<EOF>> genmake_warnings
415    
416    WARNING: FORTRAN test compile fails -- please see "genmake_errors"
417    WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
418    WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here.
419    EOF
420            return 1
421        fi
422        f_tcall=`nm genmake_tcomp.o | grep 'T ' | grep tcall | cut -d ' ' -f 3`
423        RETVAL=$?
424        if test "x$RETVAL" != x0 ; then
425            FC_NAMEMANGLE=$default_nm
426            cat <<EOF>> genmake_warnings
427    
428    WARNING: The "nm" command failed.
429    WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
430    WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here.
431    EOF
432            return 1
433        fi
434    
435        c_a=`echo $c_tcall | sed -e 's|tcall|Y Y|' | cut -d ' ' -f 1 | sed -e 's|Y||'`
436        f_a=`echo $f_tcall | sed -e 's|tcall|Y Y|' | cut -d ' ' -f 1 | sed -e 's|Y||'`
437        c_b=`echo $c_tcall | sed -e 's|tcall|Y Y|' | cut -d ' ' -f 2 | sed -e 's|Y||'`
438        f_b=`echo $f_tcall | sed -e 's|tcall|Y Y|' | cut -d ' ' -f 2 | sed -e 's|Y||'`
439    
440        nmangle="X"
441        if test "x$c_a" != "x$f_a" ; then
442            comm="echo x$f_a | sed -e 's|x$c_a||'"
443            a=`eval $comm`
444            nmangle="$a ## $nmangle"
445        fi
446        if test "x$c_b" != "x$f_b" ; then
447            comm="echo x$f_b | sed -e 's|x$c_b||'"
448            b=`eval $comm`
449            nmangle="$nmangle ## $b"
450        fi
451    
452        FC_NAMEMANGLE="#define FC_NAMEMANGLE(X)  $nmangle"
453    
454        #  cleanup the testing files
455        rm -f genmake_tcomp.* genmake_test.*
456    }
457    
458    
459    check_HAVE_CLOC()  {
460        get_fortran_c_namemangling
461        cat <<EOF > genmake_tc_1.c
462    $FC_NAMEMANGLE
463    #include <stdio.h>
464    #include <stdlib.h>
465    #include <unistd.h>
466    #include <assert.h>
467    #include <sys/time.h>
468    void FC_NAMEMANGLE(cloc) ( double *curtim )
469    {
470     struct timeval tv1;
471     gettimeofday(&tv1 , (void *)NULL );
472     *curtim =  (double)((tv1.tv_usec)+(tv1.tv_sec)*1.E6);
473     *curtim = *curtim/1.E6;
474    }
475    EOF
476        make genmake_tc_1.o >> genmake_tc.log 2>&1
477        RET_C=$?
478        cat <<EOF > genmake_tc_2.f
479          program hello
480          Real*8 wtime
481          external cloc
482          call cloc(wtime)
483          print *," HELLO WORLD", wtime
484          end program hello
485    EOF
486        $FC $FFLAGS -o genmake_tc genmake_tc_2.f genmake_tc_1.o >> genmake_tc.log 2>&1
487        RET_F=$?
488        test -x ./genmake_tc  &&  ./genmake_tc >> genmake_tc.log 2>&1
489        RETVAL=$?
490        if test "x$RETVAL" = x0 ; then
491            HAVE_CLOC=t
492            DEFINES="$DEFINES -DHAVE_CLOC"
493        fi
494        rm -f genmake_tc*
495    }
496    
497    
498    check_netcdf_libs()  {
499        cat <<EOF > genmake_tnc.F
500          program fgennc
501    #include "netcdf.inc"
502          integer iret, ncid, xid
503          iret = nf_create('genmake_tnc.nc', NF_CLOBBER, ncid)
504          IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret)
505          iret = nf_def_dim(ncid, 'X', 11, xid)
506          IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret)
507          iret = nf_close(ncid)
508          IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret)
509          end
510    EOF
511        $CPP genmake_tnc.F > genmake_tnc.f  \
512            &&  $FC $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.f $LIBS >> genmake_tnc.log 2>&1
513        RET_COMPILE=$?
514        test -x ./genmake_tnc  &&  ./genmake_tnc >> genmake_tnc.log 2>&1
515        RETVAL=$?
516        if test "x$RET_COMPILE" = x0 -a "x$RETVAL" = x0 ; then
517            HAVE_NETCDF=t
518        else
519            # try again with "-lnetcdf" added to the libs
520            $CPP genmake_tnc.F > genmake_tnc.f  \
521                &&  $FC $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.f \
522                $LIBS -lnetcdf >> genmake_tnc_2.log 2>&1
523            RET_COMPILE=$?
524            test -x ./genmake_tnc  &&  ./genmake_tnc >> genmake_tnc.log 2>&1
525            RETVAL=$?
526            if test "x$RET_COMPILE" = x0 -a "x$RETVAL" = x0 ; then
527                LIBS="$LIBS -lnetcdf"
528                HAVE_NETCDF=t
529            else
530                cat genmake_tnc.log >> genmake_warnings
531            fi
532        fi
533        rm -f genmake_tnc*
534    }
535    
536    
537    
538    ###############################################################################
539    #   Sequential part of script starts here
540    ###############################################################################
541    
542  #  Set defaults here  #  Set defaults here
543  COMMANDL="$0 $@"  COMMANDL="$0 $@"
# Line 289  LN= Line 547  LN=
547  S64=  S64=
548  KPP=  KPP=
549  FC=  FC=
550    CPP=
551  LINK=  LINK=
552  DEFINES="-DWORDLENGTH=4"  DEFINES=
553  PACKAGES=  PACKAGES=
554  ENABLE=  ENABLE=
555  DISABLE=  DISABLE=
# Line 306  FOPTIM= Line 565  FOPTIM=
565  CFLAGS=  CFLAGS=
566  KFLAGS1=  KFLAGS1=
567  KFLAGS2=  KFLAGS2=
568    #LDADD=
569  LIBS=  LIBS=
570  KPPFILES=  KPPFILES=
571  NOOPTFILES=  NOOPTFILES=
572  NOOPTFLAGS=  NOOPTFLAGS=
573    MPI=
574    MPIPATH=
575    
576    # DEFINES checked by test compilation
577    HAVE_SYSTEM=
578    HAVE_FDATE=
579    FC_NAMEMANGLE=
580    HAVE_CLOC=
581    HAVE_NETCDF=
582    
583  MODS=  MODS=
584  TOOLSDIR=  TOOLSDIR=
585  SOURCEDIRS=  SOURCEDIRS=
586  INCLUDEDIRS=  INCLUDEDIRS=
587  STANDARDDIRS=  STANDARDDIRS="USE_THE_DEFAULT"
588    
589    G2ARGS=
590    BASH=
591  PWD=`pwd`  PWD=`pwd`
592  MAKE=make  MAKE=make
593  AWK=awk  AWK=awk
# Line 348  TAMC_EXTRA= Line 619  TAMC_EXTRA=
619    
620    
621  #  The following state can be set directly by command-line switches  #  The following state can be set directly by command-line switches
622  gm_s1="OPTFILE PDEPEND PDEFAULT MAKEFILE PLATFORM ROOTDIR MODS DISABLE ENABLE NOOPT"  gm_s1="OPTFILE PDEPEND PDEFAULT MAKEFILE PLATFORM ROOTDIR MODS DISABLE ENABLE"
623  gm_s2="FC IEEE MPI JAM DUMPSTATE STANDARDDIRS"  gm_s2="FC CPP IEEE MPI JAM DUMPSTATE STANDARDDIRS"
624    
625  #  The following state is not directly set by command-line switches  #  The following state is not directly set by command-line switches
626  gm_s3="LN S64 KPP LINK PACKAGES MAKEDEPEND PDEPEND PDEFAULT INCLUDES FFLAGS FOPTIM "  gm_s3="LN S64 KPP LINK PACKAGES MAKEDEPEND PDEPEND PDEFAULT INCLUDES FFLAGS FOPTIM "
627  gm_s4="CFLAGS KFLAGS1 KFLAGS2 LIBS KPPFILES NOOPTFILES NOOPTFLAGS"  gm_s4="CFLAGS KFLAGS1 KFLAGS2 LIBS KPPFILES NOOPTFILES NOOPTFLAGS"
628  gm_s5="TOOLSDIR SOURCEDIRS INCLUDEDIRS PWD MAKE THISHOSTNAME THISDATE MACHINE"  gm_s5="TOOLSDIR SOURCEDIRS INCLUDEDIRS PWD MAKE THISHOSTNAME THISDATE MACHINE"
629  gm_s6="EXECUTABLE EXEHOOK EXEDIR PACKAGES_CONF"  gm_s6="EXECUTABLE EXEHOOK EXEDIR PACKAGES_CONF"
630    gm_s7="HAVE_SYSTEM HAVE_FDATE FC_NAMEMANGLE"
631    
632  #  The following are all related to adjoint/tangent-linear stuff  #  The following are all related to adjoint/tangent-linear stuff
633  gm_s7="AUTODIFF_PKG_USED AD_OPTFILE TAMC TAF AD_TAMC_FLAGS AD_TAF_FLAGS"  gm_s10="AUTODIFF_PKG_USED AD_OPTFILE TAMC TAF AD_TAMC_FLAGS AD_TAF_FLAGS"
634  gm_s8="FTL_TAMC_FLAGS FTL_TAF_FLAGS SVD_TAMC_FLAGS SVD_TAF_FLAGS"  gm_s11="FTL_TAMC_FLAGS FTL_TAF_FLAGS SVD_TAMC_FLAGS SVD_TAF_FLAGS"
635  gm_s9="TAF_EXTRA TAMC_EXTRA"  gm_s12="TAF_EXTRA TAMC_EXTRA"
636    
637  gm_state="COMMANDL $gm_s1 $gm_s2 $gm_s3 $gm_s4 $gm_s5 $gm_s6 $gm_s7 $gm_s8 $gm_s9"  gm_state="COMMANDL $gm_s1 $gm_s2 $gm_s3 $gm_s4 $gm_s5 $gm_s6 $gm_s7"
638    gm_state="$gm_state $gm_s10 $gm_s11 $gm_s12"
639    
640    cat <<EOF
641    
642    GENMAKE :
643    
644    A program for GENerating MAKEfiles for the MITgcm project.  For a
645    quick list of options, use "genmake -h" or for more detail see:
646    
647      http://mitgcm.org/devel_HOWTO/
648    
649    EOF
650    
 echo  
651  echo "===  Processing options files and arguments  ==="  echo "===  Processing options files and arguments  ==="
652  gm_local="genmake_local"  gm_local="genmake_local"
653  for i in . $MODS ; do  for i in . $MODS ; do
654      if test -r $i/$gm_local ; then      if test -r $i/$gm_local ; then
655          source $i/$gm_local          . $i/$gm_local
656          break          break
657      fi      fi
658  done  done
659  echo -n "  getting local config information:  "  printf "  getting local config information:  "
660  if test -e $gm_local ; then  if test -e $gm_local ; then
661      echo "using $gm_local"      echo "using $gm_local"
662      source $gm_local      . $gm_local
663      # echo "DISABLE=$DISABLE"      # echo "DISABLE=$DISABLE"
664      # echo "ENABLE=$ENABLE"      # echo "ENABLE=$ENABLE"
665  else  else
# Line 398  fi Line 680  fi
680  ac_prev=  ac_prev=
681  for ac_option ; do  for ac_option ; do
682    
683        G2ARGS="$G2ARGS \"$ac_option\""
684    
685      # If the previous option needs an argument, assign it.      # If the previous option needs an argument, assign it.
686      if test -n "$ac_prev"; then      if test -n "$ac_prev"; then
687          eval "$ac_prev=\$ac_option"          eval "$ac_prev=\$ac_option"
# Line 419  for ac_option ; do Line 703  for ac_option ; do
703          -optfile=* | --optfile=* | -of=* | --of=*)          -optfile=* | --optfile=* | -of=* | --of=*)
704              OPTFILE=$ac_optarg ;;              OPTFILE=$ac_optarg ;;
705                    
706          -adoptfile | --adoptfile | -ad | --ad)          -adoptfile | --adoptfile | -adof | --adof)
707              ac_prev=AD_OPTFILE ;;              ac_prev=AD_OPTFILE ;;
708          -adoptfile=* | --adoptfile=* | -adof=* | --adof=*)          -adoptfile=* | --adoptfile=* | -adof=* | --adof=*)
709              AD_OPTFILE=$ac_optarg ;;              AD_OPTFILE=$ac_optarg ;;
# Line 439  for ac_option ; do Line 723  for ac_option ; do
723          -make=* | --make=* | -m=* | --m=*)          -make=* | --make=* | -m=* | --m=*)
724              MAKE=$ac_optarg ;;              MAKE=$ac_optarg ;;
725                    
726            -bash | --bash)
727                ac_prev=BASH ;;
728            -bash=* | --bash=*)
729                BASH=$ac_optarg ;;
730            
731            -makedepend | --makedepend | -md | --md)
732                ac_prev=MAKEDEPEND ;;
733            -makedepend=* | --makedepend=* | -md=* | --md=*)
734                MAKEDEPEND=$ac_optarg ;;
735            
736          -makefile | --makefile | -ma | --ma)          -makefile | --makefile | -ma | --ma)
737              ac_prev=MAKEFILE ;;              ac_prev=MAKEFILE ;;
738          -makefile=* | --makefile=* | -ma=* | --ma=*)          -makefile=* | --makefile=* | -ma=* | --ma=*)
739              MAKEFILE=$ac_optarg ;;              MAKEFILE=$ac_optarg ;;
740                    
741          -platform | --platform | -pl | --pl)          -platform | --platform | -pl | --pl | -platform=* | --platform=* | -pl=* | --pl=*)
742              ac_prev=PLATFORM ;;              echo "ERROR: The platform option has been removed.  Please specify"
743          -platform=* | --platform=* | -pl=* | --pl=*)              echo "  the build options using the \"optfile\" mechanism."
744              PLATFORM=$ac_optarg ;;              echo
745                usage
746                ;;
747                    
748          -rootdir | --rootdir | -rd | --rd)          -rootdir | --rootdir | -rd | --rd)
749              ac_prev=ROOTDIR ;;              ac_prev=ROOTDIR ;;
# Line 474  for ac_option ; do Line 770  for ac_option ; do
770          -standarddirs=* | --standarddirs=*)          -standarddirs=* | --standarddirs=*)
771              STANDARDDIRS=$ac_optarg ;;              STANDARDDIRS=$ac_optarg ;;
772    
         -noopt | --noopt)  
             ac_prev=NOOPT ;;  
         -noopt=* | --noopt=*)  
             NOOPT=$ac_optarg ;;  
           
773  #           -cpp | --cpp)  #           -cpp | --cpp)
774  #               ac_prev=cpp ;;  #               ac_prev=cpp ;;
775  #           -cpp=* | --cpp=*)  #           -cpp=* | --cpp=*)
# Line 493  for ac_option ; do Line 784  for ac_option ; do
784              IEEE=true ;;              IEEE=true ;;
785          -noieee | --noieee)          -noieee | --noieee)
786              IEEE= ;;              IEEE= ;;
787            
788          -mpi | --mpi)          -mpi | --mpi)
789              MPI=true ;;              MPI=true ;;
790          -nompi | --nompi)          -mpi=* | --mpi=*)
791              MPI= ;;              MPIPATH=$ac_optarg
792                MPI=true ;;
793                    
794          -jam | --jam)  #       -jam | --jam)
795              JAM=1 ;;  #           JAM=1 ;;
796          -nojam | --nojam)  #       -nojam | --nojam)
797              JAM=0 ;;  #           JAM=0 ;;
798                    
799          -ds | --ds)          -ds | --ds)
800              DUMPSTATE=t ;;              DUMPSTATE=t ;;
# Line 550  if test "x${ROOTDIR}" = x ; then Line 842  if test "x${ROOTDIR}" = x ; then
842          for d in . .. ../.. ../../.. ../../../.. ../../../../.. ; do          for d in . .. ../.. ../../.. ../../../.. ../../../../.. ; do
843              if [ -d "$d/model" -a -d "$d/eesupp" -a -d "$d/pkg" ]; then              if [ -d "$d/model" -a -d "$d/eesupp" -a -d "$d/pkg" ]; then
844                  ROOTDIR=$d                  ROOTDIR=$d
845                  echo -n "Warning:  ROOTDIR was not specified but there appears to be"                  printf "Warning:  ROOTDIR was not specified but there appears to be"
846                  echo " a copy of MITgcm at \"$ROOTDIR\" so we'll try it."                  echo " a copy of MITgcm at \"$ROOTDIR\" so we'll try it."
847                  break                  break
848              fi              fi
# Line 581  fi Line 873  fi
873  if test "x$OPTFILE" != xNONE ; then  if test "x$OPTFILE" != xNONE ; then
874      if test -f "$OPTFILE" -a -r "$OPTFILE" ; then      if test -f "$OPTFILE" -a -r "$OPTFILE" ; then
875          echo "    using OPTFILE=\"$OPTFILE\""          echo "    using OPTFILE=\"$OPTFILE\""
876          source "$OPTFILE"          . "$OPTFILE"
877          RETVAL=$?          RETVAL=$?
878          if test "x$RETVAL" != x0 ; then          if test "x$RETVAL" != x0 ; then
879              echo -n "Error: failed to source OPTFILE \"$OPTFILE\""              printf "Error: failed to source OPTFILE \"$OPTFILE\""
880              echo "--please check that variable syntax is bash-compatible"              echo "--please check that variable syntax is bash-compatible"
881              exit 1              exit 1
882          fi          fi
# Line 608  fi Line 900  fi
900  if test "x${AD_OPTFILE}" != xNONE ; then  if test "x${AD_OPTFILE}" != xNONE ; then
901      if test -f "$AD_OPTFILE" -a -r "$AD_OPTFILE" ; then      if test -f "$AD_OPTFILE" -a -r "$AD_OPTFILE" ; then
902          echo "    using AD_OPTFILE=\"$AD_OPTFILE\""          echo "    using AD_OPTFILE=\"$AD_OPTFILE\""
903          source "$AD_OPTFILE"          . "$AD_OPTFILE"
904          RETVAL=$?          RETVAL=$?
905          if test "x$RETVAL" != x0 ; then          if test "x$RETVAL" != x0 ; then
906              echo -n "Error: failed to source AD_OPTFILE \"$AD_OPTFILE\""              printf "Error: failed to source AD_OPTFILE \"$AD_OPTFILE\""
907              echo "--please check that variable syntax is bash-compatible"              echo "--please check that variable syntax is bash-compatible"
908              exit 1              exit 1
909          fi          fi
# Line 624  if test "x${AD_OPTFILE}" != xNONE ; then Line 916  if test "x${AD_OPTFILE}" != xNONE ; then
916      fi      fi
917  fi  fi
918    
919  #  Check that FC, LINK, CPP, and S64 are defined.  If not, complain  #  Check that FC, LINK, CPP, S64, LN, and MAKE are defined.  If not,
920  #  and abort!  #  either set defaults or complain and abort!
921    if test ! "x$BASH" = x ; then
922        # add a trailing space so that it works within the Makefile syntax (see below)
923        BASH="$BASH "
924    fi
925  if test "x$FC" = x ; then  if test "x$FC" = x ; then
926      cat <<EOF 1>&2      cat <<EOF 1>&2
927    
# Line 639  fi Line 935  fi
935  if test "x$LINK" = x ; then  if test "x$LINK" = x ; then
936      LINK=$FC      LINK=$FC
937  fi  fi
938    if test "x$MAKE" = x ; then
939        MAKE="make"
940    fi
941  if test "x$CPP" = x ; then  if test "x$CPP" = x ; then
942      CPP="cpp"      CPP=cpp
943  fi  fi
944    #EH3 === UGLY ===
945    #  The following an ugly little hack to check for $CPP in /lib/ and it
946    #  should eventually be replaced with a more general function that
947    #  searches a combo of the user's path and a list of "usual suspects"
948    #  to find the correct location for binaries such as $CPP.
949    for i in " " "/lib/" ; do
950        echo "#define A a" | $i$CPP > test_cpp 2>&1 && CPP=$i$CPP
951    done
952    #EH3 === UGLY ===
953  echo "#define A a" | $CPP > test_cpp 2>&1  echo "#define A a" | $CPP > test_cpp 2>&1
954  RETVAL=$?  RETVAL=$?
955  if test "x$RETVAL" != x0 ; then  if test "x$RETVAL" != x0 ; then
# Line 651  Error: C pre-processor "$CPP" failed the Line 959  Error: C pre-processor "$CPP" failed the
959    
960    1) within the options file ("CPP=...") as specified by "-of=OPTFILE"    1) within the options file ("CPP=...") as specified by "-of=OPTFILE"
961    2) the "./genmake_local" file    2) the "./genmake_local" file
962      3) with the CPP environment variable
963    
964  EOF  EOF
965      exit 1      exit 1
# Line 660  fi Line 969  fi
969  if test "x$MAKEDEPEND" = x ; then  if test "x$MAKEDEPEND" = x ; then
970      MAKEDEPEND=makedepend      MAKEDEPEND=makedepend
971  fi  fi
972    if test "x$LN" = x ; then
973        LN="ln -s"
974    fi
975    echo "test" > genmake_test_ln
976    $LN genmake_test_ln genmake_tlink
977    RETVAL=$?
978    if test "x$RETVAL" != x0 ; then
979        cat <<EOF 1>&2
980    
981    Error: The command "ln -s" failed -- please specify a working soft-link
982      command in the optfile.
983    
984    EOF
985        exit 1
986    fi
987    rm -f genmake_test_ln genmake_tlink
988    
989    if test ! "x$MPI" = x ; then
990          echo "  Turning on MPI cpp macros"
991          DEFINES="$DEFINES -DALLOW_USE_MPI -DALWAYS_USE_MPI"
992    fi
993    
994    printf "\n===  Checking system libraries  ===\n"
995    printf "  Do we have the system() command using $FC...  "
996    cat > genmake_tcomp.f <<EOF
997          program hello
998          call system('echo hi')
999          end
1000    EOF
1001    $FC $FFLAGS $DEFINES -o genmake_tcomp genmake_tcomp.f > genmake_tcomp.log 2>&1
1002    RETVAL=$?
1003    if test "x$RETVAL" = x0 ; then
1004        HAVE_SYSTEM=t
1005        DEFINES="$DEFINES -DHAVE_SYSTEM"
1006        echo "yes"
1007    else
1008        HAVE_SYSTEM=
1009        echo "no"
1010    fi
1011    rm -f genmake_tcomp*
1012    
1013    printf "  Do we have the fdate() command using $FC...  "
1014    cat > genmake_tcomp.f <<EOF
1015          program hello
1016          CHARACTER(128) string
1017          string = ' '
1018          call fdate( string )
1019          print *, string
1020          end
1021    EOF
1022    $FC $FFLAGS $DEFINES -o genmake_tcomp genmake_tcomp.f > genmake_tcomp.log 2>&1
1023    RETVAL=$?
1024    if test "x$RETVAL" = x0 ; then
1025        HAVE_FDATE=t
1026        DEFINES="$DEFINES -DHAVE_FDATE"
1027        echo "yes"
1028    else
1029        HAVE_FDATE=
1030        echo "no"
1031    fi
1032    rm -f genmake_tcomp*
1033    
1034    printf "  Can we call simple C routines (here, \"cloc()\") using $FC...  "
1035    check_HAVE_CLOC
1036    if test "x$HAVE_CLOC" != x ; then
1037        echo "yes"
1038    else
1039        echo "no"
1040    fi
1041    rm -f genmake_t*
1042    
1043    printf "  Can we create NetCDF-enabled binaries...  "
1044    check_netcdf_libs
1045    if test "x$HAVE_NETCDF" != x ; then
1046        echo "yes"
1047    else
1048        echo "no"
1049    fi
1050    
1051    
1052  printf "\n===  Setting defaults  ===\n"  printf "\n===  Setting defaults  ===\n"
1053  echo -n "  Adding MODS directories:  "  printf "  Adding MODS directories:  "
1054  for d in $MODS ; do  for d in $MODS ; do
1055      if test ! -d $d ; then      if test ! -d $d ; then
1056          echo          echo
1057          echo "Error: MODS directory \"$d\" not found!"          echo "Error: MODS directory \"$d\" not found!"
1058          exit 1          exit 1
1059      else      else
1060          echo -n " $d"          printf " $d"
1061          SOURCEDIRS="$SOURCEDIRS $d"          SOURCEDIRS="$SOURCEDIRS $d"
1062          INCLUDEDIRS="$INCLUDEDIRS $d"          INCLUDEDIRS="$INCLUDEDIRS $d"
1063      fi      fi
# Line 699  if test "x${TOOLSDIR}" = x ; then Line 1087  if test "x${TOOLSDIR}" = x ; then
1087      TOOLSDIR="$ROOTDIR/tools"      TOOLSDIR="$ROOTDIR/tools"
1088  fi  fi
1089  if test ! -d ${TOOLSDIR} ; then  if test ! -d ${TOOLSDIR} ; then
1090      echo "Error: the specified $TOOLSDIR (\"$TOOLSDIR\") does not exist!"      echo "Error: the specified TOOLSDIR (\"$TOOLSDIR\") does not exist!"
1091      exit 1      exit 1
1092  fi  fi
1093  if test "x$S64" = x ; then  if test "x$S64" = x ; then
1094      S64='$(TOOLSDIR)/set64bitConst.sh'      S64='$(TOOLSDIR)/set64bitConst.sh'
1095  fi  fi
1096    THIS_SCRIPT=`echo ${0} | sed 's:'$TOOLSDIR':\$(TOOLSDIR):'`
1097    
1098  EXECUTABLE=${EXECUTABLE:-mitgcmuv}  EXECUTABLE=${EXECUTABLE:-mitgcmuv}
1099    
# Line 713  EXECUTABLE=${EXECUTABLE:-mitgcmuv} Line 1102  EXECUTABLE=${EXECUTABLE:-mitgcmuv}
1102  #  they appear as regular source code  #  they appear as regular source code
1103  if test -r $ROOTDIR"/eesupp/src/Makefile" ; then  if test -r $ROOTDIR"/eesupp/src/Makefile" ; then
1104      echo "  Making source files in eesupp from templates"      echo "  Making source files in eesupp from templates"
1105      $MAKE -C $ROOTDIR"/eesupp/src/" > make_eesupp.errors 2>&1      ( cd $ROOTDIR"/eesupp/src/" && $MAKE ) > make_eesupp.errors 2>&1
1106      RETVAL=$?      RETVAL=$?
1107      if test "x${RETVAL}" = x0 ; then      if test "x${RETVAL}" = x0 ; then
1108          rm -f make_eesupp.errors          rm -f make_eesupp.errors
1109      else      else
1110          echo "Error: problem encountered while building source files in eesupp:"          echo "Error: problem encountered while building source files in eesupp:"
1111          cat make_eesupp.errors          cat make_eesupp.errors 1>&2
1112          exit 1          exit 1
1113      fi      fi
1114  fi  fi
1115    
1116    #same for exch2
1117    if test -r $ROOTDIR"/pkg/exch2/Makefile" ; then
1118        echo "  Making source files in exch2 from  templates"
1119        ( cd $ROOTDIR"/pkg/exch2/" && $MAKE ) > make_exch2.errors 2>&1
1120        RETVAL=$?
1121        if test "x${RETVAL}" = x0 ; then
1122            rm -f make_exch2.errors
1123        else
1124            echo "Error: problem encountered while building source files in exch2:"
1125            cat make_exch2.errors 1>&2
1126            exit 1
1127        fi
1128    fi
1129    
1130  printf "\n===  Determining package settings  ===\n"  printf "\n===  Determining package settings  ===\n"
1131  if  test "x${PDEPEND}" = x ; then  if  test "x${PDEPEND}" = x ; then
1132      tmp=$ROOTDIR"/pkg/pkg_depend"      tmp=$ROOTDIR"/pkg/pkg_depend"
# Line 750  if test ! "x${RETVAL}" = x0 ; then Line 1153  if test ! "x${RETVAL}" = x0 ; then
1153      echo "Error: unable to parse package dependencies -- please check PDEPEND=\"$PDEPEND\""      echo "Error: unable to parse package dependencies -- please check PDEPEND=\"$PDEPEND\""
1154      exit 1      exit 1
1155  fi  fi
1156  source ./.pd_tmp  . ./.pd_tmp
1157  rm -f ./.pd_tmp  rm -f ./.pd_tmp
1158    
1159  #  Search for default packages.  Note that a "$ROOTDIR/pkg/pkg_groups"  #  Search for default packages.  Note that a "$ROOTDIR/pkg/pkg_groups"
1160  #  file should eventually be added so that, for convenience, one can  #  file should eventually be added so that, for convenience, one can
1161  #  specify groups of packages using names like "ocean" and "atmosphere".  #  specify groups of packages using names like "ocean" and "atmosphere".
1162  echo  -n "  checking default package list:  "  echo "  checking default package list:  "
1163  if test "x${PDEFAULT}" = x ; then  if test "x${PDEFAULT}" = x ; then
1164      for i in "." $MODS ; do      for i in "." $MODS ; do
1165          if test -r $i"/packages.conf" ; then          if test -r $i"/packages.conf" ; then
# Line 769  if test "x${PDEFAULT}" = x ; then Line 1172  if test "x${PDEFAULT}" = x ; then
1172      PDEFAULT="$ROOTDIR/pkg/pkg_default"      PDEFAULT="$ROOTDIR/pkg/pkg_default"
1173  fi  fi
1174  if test "x${PDEFAULT}" = xNONE ; then  if test "x${PDEFAULT}" = xNONE ; then
1175      echo "default packages file disabled"      echo "    default packages file disabled"
1176  else  else
1177      if test ! -r $PDEFAULT ; then      if test ! -r $PDEFAULT ; then
         echo ""  
1178          echo "Warning:  can't read default packages from PDEFAULT=\"$PDEFAULT\""          echo "Warning:  can't read default packages from PDEFAULT=\"$PDEFAULT\""
1179      else      else
1180          echo "  using PDEFAULT=\"$PDEFAULT\""          echo "    using PDEFAULT=\"$PDEFAULT\""
1181          #  Strip the comments and add all the names          #  Strip the comments and add all the names
1182          def=`cat $PDEFAULT | sed -e 's/#.*$//g' | $AWK '(NF>0){print $0}'`          def=`cat $PDEFAULT | sed -e 's/#.*$//g' | $AWK '(NF>0){print $0}'`
1183          RETVAL=$?          RETVAL=$?
1184          if test "x${RETVAL}" != x0 ; then          if test "x${RETVAL}" != x0 ; then
1185              echo -n "Error: can't parse default package list "              printf "Error: can't parse default package list "
1186              echo "-- please check PDEFAULT=\"$PDEFAULT\""              echo "-- please check PDEFAULT=\"$PDEFAULT\""
1187              exit 1              exit 1
1188          fi          fi
# Line 908  for i in $PACKAGES ; do Line 1310  for i in $PACKAGES ; do
1310      fi      fi
1311  done  done
1312    
1313  #  This is compatible with the old genmake.  The "DISABLE_*" flags  #  Build MNC templates and check for ability to build and use NetCDF
1314  #  need to be replaced by the "ALLOW_*" flags set below.  echo $PACKAGES | grep ' mnc ' > /dev/null 2>&1
1315  #  RETVAL=$?
1316  # echo -n "  Setting package-specific CPP flags:  "  if test "x$RETVAL" = x0 ; then
1317  # pkrm=( mom_fluxform mom_vecinv generic_advdiff )      ( cd $ROOTDIR"/pkg/mnc" && $MAKE templates ) > make_mnc.errors 2>&1
1318  # pkrmdef=( -DDISABLE_MOM_FLUXFORM -DDISABLE_MOM_VECINV -DDISABLE_GENERIC_ADVDIFF -DDISABLE_DEBUGMODE )      RETVAL=$?
1319  # echo -n "  "      if test "x${RETVAL}" = x0 ; then
1320  # i=0          rm -f make_mnc.errors
1321  # while test $i -lt "${#pkrm[@]}" ; do      else
1322  #     echo "$PACKAGES" | grep "${pk[$i]}" > /dev/null 2>&1          echo "Error: problem encountered while building source files in pkg/mnc:"
1323  #     RETVAL=$?          cat make_mnc.errors 1>&2
1324  #     if test "x$RETVAL" = x1 ; then          exit 1
1325  #       DEFINES="$DEFINES ${pkdef[$i]}"      fi
1326  #       echo -n " ${pkdef[$i]}"      if test "x$HAVE_NETCDF" != xt ; then
1327  #     fi          cat <<EOF
 #     i=$(( $i + 1 ))  
 # done  
 # echo  
   
 # Create a list of #define and #undef to enable/disable packages  
 PACKAGES_DOT_H=PACKAGES_CONFIG.h  
 cat <<EOF >$PACKAGES_DOT_H".tmp"  
 C=== GENMAKE v2 ===  
 C  The following defines have been set by GENMAKE, so please do not  
 C  edit anything below these comments.  In general, you should  
 C  add or remove packages by re-running genmake with different  
 C  "-enable" and/or "-disable" options.  
1328    
1329  #ifndef PACKAGES_H  WARNING: the "mnc" package has been enabled but tests failed to
1330  #define PACKAGES_H    compile and/or execute NetCDF applications.  Please check that:
1331    
1332  C  Packages disabled by genmake:    1) NetCDF is installed for your compiler and
1333      2) the LIBS variable (within the 'optfile") specifies the correct
1334           NetCDF library to link against.
1335      
1336  EOF  EOF
1337        fi
1338    fi
1339    
1340    # Create a list of #define and #undef to enable/disable packages
1341    PACKAGES_DOT_H=PACKAGES_CONFIG.h
1342  #  The following UGLY HACK sets multiple "#undef"s and it needs to go  #  The following UGLY HACK sets multiple "#undef"s and it needs to go
1343  #  away.  On 2003-08-12, CNH, JMC, and EH3 agreed that the CPP_OPTIONS.h  #  away.  On 2003-08-12, CNH, JMC, and EH3 agreed that the CPP_OPTIONS.h
1344  #  file would eventually be split up so that all package-related #define  #  file would eventually be split up so that all package-related #define
1345  #  statements could be separated and handled only by genmake.  #  statements could be separated and handled only by genmake.
1346  names=`ls -1 "$ROOTDIR/pkg"`  names=`ls -1 "$ROOTDIR/pkg"`
1347  all_pack=  all_pack=
1348    DISABLED_PACKAGES=
1349  for n in $names ; do  for n in $names ; do
1350      if test -d "$ROOTDIR/pkg/$n" -a "x$n" != xCVS ; then      if test -d "$ROOTDIR/pkg/$n" -a "x$n" != xCVS ; then
1351          has_pack="f"          has_pack="f"
# Line 958  for n in $names ; do Line 1357  for n in $names ; do
1357          done          done
1358          if test "x$has_pack" = xf ; then          if test "x$has_pack" = xf ; then
1359              undef=`echo "ALLOW_$n" | $AWK '{print toupper($0)}'`              undef=`echo "ALLOW_$n" | $AWK '{print toupper($0)}'`
1360              echo "#undef $undef" >> $PACKAGES_DOT_H".tmp"              DISABLED_PACKAGES="$DISABLED_PACKAGES -U$undef"
 #           DEFINES="$DEFINES -U$undef"  
   
 #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!  
             case $n in  
                 mom_fluxform)  
                     DEFINES="$DEFINES -DDISABLE_MOM_FLUXFORM"  
                     ;;  
                 mom_vecinv)  
                     DEFINES="$DEFINES -DDISABLE_MOM_VECINV"  
                     ;;  
                 debug)  
                     DEFINES="$DEFINES -DDISABLE_DEBUGMODE"  
                     ;;  
             esac  
 #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!  
   
1361          fi          fi
1362      fi      fi
1363  done  done
1364  cat <<EOF >>$PACKAGES_DOT_H".tmp"  ENABLED_PACKAGES=
   
 C  Packages enabled by genmake:  
 EOF  
1365  for i in $PACKAGES ; do  for i in $PACKAGES ; do
1366      def=`echo "ALLOW_$i" | $AWK '{print toupper($0)}'`      def=`echo "ALLOW_$i" | $AWK '{print toupper($0)}'`
1367      echo "#define $def" >> $PACKAGES_DOT_H".tmp"      ENABLED_PACKAGES="$ENABLED_PACKAGES -D$def"
1368  #eh3 DEFINES="$DEFINES -D$def"  #eh3 DEFINES="$DEFINES -D$def"
1369    
1370  #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!  #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!
1371      case $i in      case $i in
1372          aim_v23)          aim_v23)
1373              echo "#define   ALLOW_AIM" >> $PACKAGES_DOT_H".tmp"              ENABLED_PACKAGES="$ENABLED_PACKAGES -DALLOW_AIM"
1374              DEFINES="$DEFINES -DALLOW_AIM"              echo "Warning: ALLOW_AIM is set to enable aim_v23."
             echo "Warning: ALLOW_AIM is set to enable aim_v23. This is REALLY ugly Jean-Michel :-)"  
1375              ;;              ;;
1376      esac      esac
1377  #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!  #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!
1378    
1379  done  done
 cat <<EOF >>$PACKAGES_DOT_H".tmp"  
   
 #endif /* PACKAGES_H */  
 EOF  
   
 if test ! -f $PACKAGES_DOT_H ; then  
     mv -f $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H  
 else  
     cmp $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H  
     RETVAL=$?  
     if test "x$RETVAL" = x0 ; then  
         rm -f $PACKAGES_DOT_H".tmp"  
     else  
         mv -f $PACKAGES_DOT_H $PACKAGES_DOT_H".bak"  
         mv -f $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H  
     fi  
 fi  
1380    
1381  echo "  Adding STANDARDDIRS"  echo "  Adding STANDARDDIRS"
1382  BUILDDIR=${BUILDDIR:-.}  BUILDDIR=${BUILDDIR:-.}
1383  if test "x$STANDARDDIRS" = x ; then  if test "x$STANDARDDIRS" = xUSE_THE_DEFAULT ; then
1384      STANDARDDIRS="eesupp model"      STANDARDDIRS="eesupp model"
1385  fi  fi
1386  for d in $STANDARDDIRS ; do  if test "x$STANDARDDIRS" != x ; then
1387      adr="$ROOTDIR/$d/src"      for d in $STANDARDDIRS ; do
1388      if test ! -d $adr ; then          adr="$ROOTDIR/$d/src"
1389          echo "Error:  directory $adr not found -- please check that ROOTDIR=\"$ROOTDIR\""          if test ! -d $adr ; then
1390          echo "  is correct and that you correctly specified the STANDARDDIRS option"              echo "Error:  directory $adr not found -- please check that ROOTDIR=\"$ROOTDIR\""
1391          exit 1              echo "  is correct and that you correctly specified the STANDARDDIRS option"
1392      else              exit 1
1393          SOURCEDIRS="$SOURCEDIRS $adr"          else
1394      fi              SOURCEDIRS="$SOURCEDIRS $adr"
1395      adr="$ROOTDIR/$d/inc"          fi
1396      if test ! -d $adr ; then          adr="$ROOTDIR/$d/inc"
1397          echo "Error:  directory $adr not found -- please check that ROOTDIR=\"$ROOTDIR\""          if test ! -d $adr ; then
1398          echo "  is correct and that you correctly specified the STANDARDDIRS option"              echo "Error:  directory $adr not found -- please check that ROOTDIR=\"$ROOTDIR\""
1399          exit 1              echo "  is correct and that you correctly specified the STANDARDDIRS option"
1400      else              exit 1
1401          INCLUDEDIRS="$INCLUDEDIRS $adr"          else
1402      fi              INCLUDEDIRS="$INCLUDEDIRS $adr"
1403  done          fi
1404        done
1405    fi
1406    
1407  echo " Searching for CPP_OPTIONS.h in order to warn about the presence"  echo "  Searching for *OPTIONS.h files in order to warn about the presence"
1408  echo " of \"#define ALLOW_PKGNAME\"-type statements:"  echo "    of \"#define \"-type statements that are no longer allowed:"
1409  CPP_OPTIONS=  CPP_OPTIONS=
1410    CPP_EEOPTIONS=
1411  spaths=". $INCLUDEDIRS"  spaths=". $INCLUDEDIRS"
1412    names=`ls -1 "$ROOTDIR/pkg"`
1413  for i in $spaths ; do  for i in $spaths ; do
1414      try="$i/CPP_OPTIONS.h"      try="$i/CPP_OPTIONS.h"
1415      #  echo -n "    trying $try : "      if test -f $try -a -r $try -a "x$CPP_OPTIONS" = x ; then
     if test -f $try -a -r $try ; then  
1416          echo "    found CPP_OPTIONS=\"$try\""          echo "    found CPP_OPTIONS=\"$try\""
1417          CPP_OPTIONS="$try"          CPP_OPTIONS="$try"
1418          break          # New safety test: make sure packages are not mentioned in CPP_OPTIONS.h
1419            for n in $names ; do
1420                test_for_package_in_cpp_options $CPP_OPTIONS $n
1421            done
1422        fi
1423        try="$i/CPP_EEOPTIONS.h"
1424        if test -f $try -a -r $try -a "x$CPP_EEOPTIONS" = x ; then
1425            echo "    found CPP_EEOPTIONS=\"$try\""
1426            # New safety test: make sure MPI is not determined by CPP_EEOPTIONS.h
1427    #**** not yet enabled ****
1428    #        test_for_mpi_in_cpp_eeoptions $try
1429    #**** not yet enabled ****
1430            CPP_EEOPTIONS="$try"
1431      fi      fi
1432  done  done
1433  if test "x$CPP_OPTIONS" = x ; then  if test "x$CPP_OPTIONS" = x ; then
1434      echo "Error: can't find \"CPP_OPTIONS.h\" in the path list: $spaths"      echo "Error: can't find \"CPP_OPTIONS.h\" in the path list: $spaths"
1435      exit 1      exit 1
1436  fi  fi
 # New safety test: make sure packages are not mentioned in CPP_OPTIONS.h  
 names=`ls -1 "$ROOTDIR/pkg"`  
 for n in $names ; do  
     test_for_package_in_cpp_options $CPP_OPTIONS $n  
 done  
   
1437    
1438  #  Here, we build the list of files to be "run through" the adjoint  #  Here, we build the list of files to be "run through" the adjoint
1439  #  compiler.  #  compiler.
# Line 1077  for i in $SOURCEDIRS ; do Line 1448  for i in $SOURCEDIRS ; do
1448      done      done
1449  done  done
1450    
 cat <<EOF > adjoint_sed  
 s/call adopen(/call adopen ( mythid,\\  
      \&           /g  
 s/call adclose(/call adclose( mythid,\\  
      \&           /g  
 s/call adread(/call adread ( mythid,\\  
      \&           /g  
 s/call adwrite(/call adwrite( mythid,\\  
      \&           /g  
   
 EOF  
1451    
1452  echo  echo
1453  echo "===  Creating the Makefile  ==="  echo "===  Creating the Makefile  ==="
# Line 1105  rm -rf .links.tmp Line 1465  rm -rf .links.tmp
1465  mkdir .links.tmp  mkdir .links.tmp
1466  echo "# This section creates symbolic links" > srclinks.tmp  echo "# This section creates symbolic links" > srclinks.tmp
1467  echo "" >> srclinks.tmp  echo "" >> srclinks.tmp
1468  echo -n 'SRCFILES = '    > srclist.inc  printf 'SRCFILES = '    > srclist.inc
1469  echo -n 'CSRCFILES = '   > csrclist.inc  printf 'CSRCFILES = '   > csrclist.inc
1470  echo -n 'F90SRCFILES = ' > f90srclist.inc  printf 'F90SRCFILES = ' > f90srclist.inc
1471  echo -n 'HEADERFILES = ' > hlist.inc  printf 'HEADERFILES = ' > hlist.inc
1472  echo -n 'AD_FLOW_FILES = ' > ad_flow_files.inc  printf 'AD_FLOW_FILES = ' > ad_flow_files.inc
1473  alldirs="$SOURCEDIRS $INCLUDEDIRS ."  alldirs="$SOURCEDIRS $INCLUDEDIRS ."
1474  for d in $alldirs ; do  for d in $alldirs ; do
1475      deplist=      deplist=
# Line 1118  for d in $alldirs ; do Line 1478  for d in $alldirs ; do
1478      for sf in $sfiles ; do      for sf in $sfiles ; do
1479          if test ! -r ".links.tmp/$sf" ; then          if test ! -r ".links.tmp/$sf" ; then
1480              if test -f "$d/$sf" ; then              if test -f "$d/$sf" ; then
1481                    case $d/$sf in
1482                      ./$PACKAGES_DOT_H)
1483                            ;;
1484                      ./AD_CONFIG.h)
1485                            ;;
1486                      ./FC_NAMEMANGLE.h)
1487                            ;;
1488                      *)
1489                            touch .links.tmp/$sf
1490                            deplist="$deplist $sf"
1491                            ;;
1492                    esac
1493                  extn=`echo $sf | $AWK -F '.' '{print $NF}'`                  extn=`echo $sf | $AWK -F '.' '{print $NF}'`
                 touch .links.tmp/$sf  
                 deplist="$deplist $sf"  
1494                  case $extn in                  case $extn in
1495                      F)                      F)
1496                          echo    " \\"  >> srclist.inc                          echo    " \\"  >> srclist.inc
1497                          echo -n " $sf" >> srclist.inc                          printf " $sf" >> srclist.inc
1498                          ;;                          ;;
1499                      F90)                      F90)
1500                          echo    " \\"  >> f90srclist.inc                          echo    " \\"  >> f90srclist.inc
1501                          echo -n " $sf" >> f90srclist.inc                          printf " $sf" >> f90srclist.inc
1502                          ;;                          ;;
1503                      c)                      c)
1504                          echo    " \\"  >> csrclist.inc                          echo    " \\"  >> csrclist.inc
1505                          echo -n " $sf" >> csrclist.inc                          printf " $sf" >> csrclist.inc
1506                          ;;                          ;;
1507                      h)                      h)
1508                          echo    " \\"  >> hlist.inc                          echo    " \\"  >> hlist.inc
1509                          echo -n " $sf" >> hlist.inc                          printf " $sf" >> hlist.inc
1510                          ;;                          ;;
1511                      flow)                      flow)
1512                          echo    " \\"  >> ad_flow_files.inc                          echo    " \\"  >> ad_flow_files.inc
1513                          echo -n " $sf" >> ad_flow_files.inc                          printf " $sf" >> ad_flow_files.inc
1514                          ;;                          ;;
1515                  esac                  esac
1516              fi              fi
# Line 1169  echo "#    $MACHINE" >> $MAKEFILE Line 1539  echo "#    $MACHINE" >> $MAKEFILE
1539  echo "# This makefile was generated automatically on" >> $MAKEFILE  echo "# This makefile was generated automatically on" >> $MAKEFILE
1540  echo "#    $THISDATE" >> $MAKEFILE  echo "#    $THISDATE" >> $MAKEFILE
1541  echo "# by the command:" >> $MAKEFILE  echo "# by the command:" >> $MAKEFILE
1542  echo "#    $0 $@" >> $MAKEFILE  echo "#    $0 $G2ARGS" >> $MAKEFILE
1543  echo "# executed by:" >> $MAKEFILE  echo "# executed by:" >> $MAKEFILE
1544  echo "#    $USER@${THISHOSTNAME}:${THISCWD}" >> $MAKEFILE  echo "#    $USER@${THISHOSTNAME}:${THISCWD}" >> $MAKEFILE
1545    
1546    EXE_AD=$EXECUTABLE"_ad"
1547    EXE_FTL=$EXECUTABLE"_ftl"
1548    EXE_SVD=$EXECUTABLE"_svd"
1549    
1550  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
1551    #
1552    # OPTFILE="$OPTFILE"
1553  #  #
1554  # BUILDDIR     : Directory where object files are written  # BUILDDIR     : Directory where object files are written
1555  # SOURCEDIRS   : Directories containing the source (.F) files  # SOURCEDIRS   : Directories containing the source (.F) files
# Line 1202  TOOLSDIR    = ${TOOLSDIR} Line 1579  TOOLSDIR    = ${TOOLSDIR}
1579    
1580  #eh3  new defines for the adjoint work  #eh3  new defines for the adjoint work
1581  AUTODIFF    = ${ROOTDIR}/pkg/autodiff  AUTODIFF    = ${ROOTDIR}/pkg/autodiff
1582    EXE_AD      = ${EXE_AD}
1583    EXE_FTL     = ${EXE_FTL}
1584    EXE_SVD     = ${EXE_SVD}
1585    
1586    ENABLED_PACKAGES = ${ENABLED_PACKAGES}
1587    DISABLED_PACKAGES = ${DISABLED_PACKAGES}
1588    
1589    # These files are created by Makefile
1590    SPECIAL_FILES = ${PACKAGES_DOT_H} AD_CONFIG.h FC_NAMEMANGLE.h
1591    
1592  EOF  EOF
1593    
# Line 1221  FC = ${FC} Line 1607  FC = ${FC}
1607  # Fortran compiler  # Fortran compiler
1608  F90C = ${F90C}  F90C = ${F90C}
1609  # Link editor  # Link editor
1610  LINK = ${LINK}  LINK = ${LINK} ${LDADD}
1611    
1612  # Defines for CPP  # Defines for CPP
1613  DEFINES = ${DEFINES}  DEFINES = ${DEFINES}
# Line 1267  cat >>$MAKEFILE <<EOF Line 1653  cat >>$MAKEFILE <<EOF
1653  .SUFFIXES: .o .f .p .F .c .F90 .f90  .SUFFIXES: .o .f .p .F .c .F90 .f90
1654    
1655  all: \$(EXECUTABLE)  all: \$(EXECUTABLE)
1656  \$(EXECUTABLE): \$(OBJFILES)  \$(EXECUTABLE): \$(SPECIAL_FILES) \$(SRCFILES) \$(CSRCFILES) \$(HEADERFILES) \$(F90SRCFILES) \$(OBJFILES)
1657            @echo Creating \$@ ...
1658          \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) \$(LIBS)          \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) \$(LIBS)
1659  depend:  depend:
1660          @make links          @make links
1661          \$(MAKEDEPEND) -o .f \$(DEFINES) \$(INCLUDES) \$(SRCFILES)          \$(MAKEDEPEND) -o .f \$(DEFINES) \$(INCLUDES) \$(SRCFILES)
1662          ${TOOLSDIR}/f90mkdepend >> \$(MAKEFILE)          \$(TOOLSDIR)/f90mkdepend >> \$(MAKEFILE)
1663            -rm -f makedepend.out
1664    
1665  links: \$(SRCFILES) \$(CSRCFILES) \$(HEADERFILES) \$(F90SRCFILES)  links: \$(SRCFILES) \$(CSRCFILES) \$(HEADERFILES) \$(F90SRCFILES) \$(SPECIAL_FILES)
1666    
1667  small_f: \$(F77FILES) \$(F90FILES)  small_f: \$(F77FILES) \$(F90FILES)
1668    
# Line 1283  output.txt: \$(EXECUTABLE) Line 1671  output.txt: \$(EXECUTABLE)
1671          @\$(EXECUTABLE) > \$@          @\$(EXECUTABLE) > \$@
1672    
1673  clean:  clean:
1674          -rm -rf *.o *.f *.p *.f90 *.mod ${RMFILES} work.{pc,pcl}          -rm -rf *.o *.f *.p *.f90 *.mod ${RMFILES} work.{pc,pcl} *.template
1675  Clean:  Clean:
1676          @make clean          @make clean
1677          @make cleanlinks          @make cleanlinks
1678          -rm -f Makefile.bak genmake_state genmake_optfile make.log          -rm -f \$(SPECIAL_FILES)
1679            -rm -f genmake_state genmake_*optfile genmake_warnings make.log run.log *.bak
1680  CLEAN:  CLEAN:
1681          @make Clean          @make Clean
1682          -find \$(EXEDIR) -name "*.meta" -exec rm {} \;          -find \$(EXEDIR) -name "*.meta" -exec rm {} \;
# Line 1297  CLEAN: Line 1686  CLEAN:
1686    
1687  #eh3 Makefile: makefile  #eh3 Makefile: makefile
1688  makefile:  makefile:
1689          ${0} $@          $THIS_SCRIPT $G2ARGS
1690  cleanlinks:  cleanlinks:
1691          -find . -type l -exec rm {} \;          -find . -type l -exec rm {} \;
1692    
1693    # Special targets ($SPECIAL_FILES) which are create by make
1694    ${PACKAGES_DOT_H}:
1695            @echo Creating \$@ ...
1696            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bPACKAGES_CONFIG_H "Disabled packages:" \$(DISABLED_PACKAGES) " " "Enabled packages:" \$(ENABLED_PACKAGES) > \$@
1697    AD_CONFIG.h:
1698            @echo Creating \$@ ...
1699            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > \$@
1700    FC_NAMEMANGLE.h:
1701            @echo Creating \$@ ...
1702            echo "$FC_NAMEMANGLE" > \$@
1703    
1704  # The normal chain of rules is (  .F - .f - .o  )  # The normal chain of rules is (  .F - .f - .o  )
1705  .F.f:  .F.f:
1706          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@
# Line 1343  done Line 1743  done
1743    
1744  echo "  Add the source list for AD code generation"  echo "  Add the source list for AD code generation"
1745  echo >> $MAKEFILE  echo >> $MAKEFILE
1746  echo -n "AD_FILES = " >> $MAKEFILE  printf "AD_FILES = " >> $MAKEFILE
1747  AD_FILES=`cat ad_files`  AD_FILES=`cat ad_files`
1748  for i in $AD_FILES ; do  for i in $AD_FILES ; do
1749      echo    " \\" >> $MAKEFILE      echo    " \\" >> $MAKEFILE
1750      echo -n " $i" >> $MAKEFILE      printf " $i" >> $MAKEFILE
1751  done  done
1752  echo >> $MAKEFILE  echo >> $MAKEFILE
1753    rm -f ad_files
1754    
1755  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
1756    
1757  ad_input_code.f: \$(F77FILES)  # ... AD ...
1758    adall: ad_taf
1759    adtaf: ad_taf_output.f
1760    adtamc: ad_tamc_output.f
1761    
1762    ad_input_code.f: \$(AD_FILES) \$(HEADERFILES)
1763            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -DALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ad_config.template
1764            cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
1765            -rm -f ad_config.template
1766            @make \$(F77FILES)
1767          @make \$(AD_FLOW_FILES)          @make \$(AD_FLOW_FILES)
1768          cat \$(AD_FLOW_FILES) \$(AD_FILES) > ad_input_code.f          cat \$(AD_FLOW_FILES) \$(AD_FILES) > ad_input_code.f
1769    
 # ... AD ...  
1770  ad_taf_output.f: ad_input_code.f  ad_taf_output.f: ad_input_code.f
1771          \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.f          \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.f
1772          cat ad_input_code_ad.f | sed -f adjoint_sed > ad_taf_output.f          cat ad_input_code_ad.f | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.f
1773    
1774    adtafonly:
1775            \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.f
1776            cat ad_input_code_ad.f | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.f
1777    
1778  ad_taf: ad_taf_output.o \$(OBJFILES)  ad_taf: ad_taf_output.o \$(OBJFILES)
1779          \$(LINK) -o ${EXECUTABLE} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_taf_output.o \$(LIBS)          \$(LINK) -o ${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_taf_output.o \$(LIBS)
1780    
1781  ad_tamc_output.f: ad_input_code.f  ad_tamc_output.f: ad_input_code.f
1782          \$(TAMC) \$(AD_TAMC_FLAGS) \$(TAMC_EXTRA) ad_input_code.f          \$(TAMC) \$(AD_TAMC_FLAGS) \$(TAMC_EXTRA) ad_input_code.f
1783          cat ad_input_code_ad.f | sed -f adjoint_sed > ad_tamc_output.f          cat ad_input_code_ad.f | sed -f \$(TOOLSDIR)/adjoint_sed > ad_tamc_output.f
1784    
1785  ad_tamc: ad_tamc_output.o \$(OBJFILES)  ad_tamc: ad_tamc_output.o \$(OBJFILES)
1786          \$(LINK) -o ${EXECUTABLE} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_tamc_output.o \$(LIBS)          \$(LINK) -o ${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_tamc_output.o \$(LIBS)
1787    
1788    
1789    # ... FTL ...
1790    ftlall: ftl_taf
1791    ftltaf: ftl_taf_output.f
1792    ftltamc: ftl_tamc_output.f
1793    
1794    ftl_input_code.f: \$(AD_FILES) \$(HEADERFILES)
1795            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ftl_config.template
1796            cmp ftl_config.template AD_CONFIG.h || cat ftl_config.template > AD_CONFIG.h
1797            -rm -f ftl_config.template
1798            @make \$(F77FILES)
1799            @make \$(AD_FLOW_FILES)
1800            cat \$(AD_FLOW_FILES) \$(AD_FILES) > ftl_input_code.f
1801    
1802  # ... FLT ...  ftl_taf_output.f: ftl_input_code.f
1803  flt_taf_output.f: ad_input_code.f          \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.f
1804          \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.f          cat ftl_input_code_ftl.f | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.f
         cat ad_input_code_ad.f | sed -f adjoint_sed > flt_taf_output.f  
1805    
1806  flt_taf: flt_taf_output.o \$(OBJFILES)  ftltafonly:
1807          \$(LINK) -o ${EXECUTABLE} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) flt_taf_output.o \$(LIBS)          \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.f
1808            cat ftl_input_code_ftl.f | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.f
1809    
1810  flt_tamc_output.f: ad_input_code.f  ftl_taf: ftl_taf_output.o \$(OBJFILES)
1811          \$(TAMC) \$(FTL_TAMC_FLAGS) \$(TAMC_EXTRA) ad_input_code.f          \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_taf_output.o \$(LIBS)
         cat ad_input_code_ad.f | sed -f adjoint_sed > flt_tamc_output.f  
1812    
1813  flt_tamc: flt_tamc_output.o \$(OBJFILES)  ftl_tamc_output.f: ftl_input_code.f
1814          \$(LINK) -o ${EXECUTABLE} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) flt_tamc_output.o \$(LIBS)          \$(TAMC) \$(FTL_TAMC_FLAGS) \$(TAMC_EXTRA) ftl_input_code.f
1815            cat ftl_input_code_ftl.f | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_tamc_output.f
1816    
1817    ftl_tamc: ftl_tamc_output.o \$(OBJFILES)
1818            \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_tamc_output.o \$(LIBS)
1819    
1820    
1821  # ... SVD ...  # ... SVD ...
1822  svd_taf_output.f: ad_input_code.f  svdtaf: ad_taf_output.f ftl_taf_output.f
1823          \$(TAF) \$(SVD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.f  svdall: svd_taf
         cat ad_input_code_ad.f | sed -f adjoint_sed > svd_taf_output.f  
1824    
1825  svd_taf: svd_taf_output.o \$(OBJFILES)  svd_taf: ad_taf_output.o ftl_taf_output.o \$(OBJFILES)
1826          \$(LINK) -o ${EXECUTABLE} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) svd_taf_output.o \$(LIBS)          \$(LINK) -o mitgcmuv_svd \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_taf_output.o ftl_taf_output.o \$(LIBS)
1827    
1828    
1829  #=========================================  #=========================================
# Line 1436  printf "\n\n# DO NOT DELETE\n" >> $MAKEF Line 1864  printf "\n\n# DO NOT DELETE\n" >> $MAKEF
1864    
1865  printf "\n===  Done  ===\n"  printf "\n===  Done  ===\n"
1866    
1867    # Create special header files
1868    $BASH $TOOLSDIR/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bPACKAGES_CONFIG_H "Disabled packages:" $DISABLED_PACKAGES " " "Enabled packages:" $ENABLED_PACKAGES > $PACKAGES_DOT_H".tmp"
1869    if test ! -f $PACKAGES_DOT_H ; then
1870        mv -f $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H
1871    else
1872        cmp $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H > /dev/null 2>&1
1873        RETVAL=$?
1874        if test "x$RETVAL" = x0 ; then
1875            rm -f $PACKAGES_DOT_H".tmp"
1876        else
1877            mv -f $PACKAGES_DOT_H $PACKAGES_DOT_H".bak"
1878            mv -f $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H
1879        fi
1880    fi
1881    if test ! -f AD_CONFIG.h ; then
1882        $BASH $TOOLSDIR/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > AD_CONFIG.h
1883    fi
1884    
1885    
1886  #  Write the "state" for future records  #  Write the "state" for future records
1887  if test "x$DUMPSTATE" != xf ; then  if test "x$DUMPSTATE" != xf ; then
1888      echo -n "" > genmake_state      printf "" > genmake_state
1889      for i in $gm_state ; do      for i in $gm_state ; do
1890          t1="t2=\$$i"          t1="t2=\$$i"
1891          eval $t1          eval $t1

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