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revision 1.11 by edhill, Mon Sep 29 16:15:23 2003 UTC revision 1.66 by edhill, Mon Feb 23 21:51:32 2004 UTC
# Line 1  Line 1 
1  #!/bin/bash  #! /usr/bin/env bash
2  #  #
3  # $Header$  # $Header$
4  #  #
# Line 8  Line 8 
8  #   modified by aja 01/00  #   modified by aja 01/00
9  #   rewritten in bash by eh3 08/03  #   rewritten in bash by eh3 08/03
10    
11    # Search for particular CPP #cmds associated with packages
12    # usage: test_for_package_in_cpp_options CPP_file package_name
13    test_for_package_in_cpp_options() {
14        cpp_options=$1
15        pkg=$2
16        test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_$pkg" || exit 99
17        test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_$pkg" || exit 99
18        test_for_string_in_file $cpp_options "^[ ]*#define.*DISABLE_$pkg" || exit 99
19        test_for_string_in_file $cpp_options "^[ ]*#undef.*DISABLE_$pkg" || exit 99
20    }
21    
22    # Search for particular CPP #cmds associated with MPI
23    # usage: test_for_mpi_in_cpp_eeoptions CPP_file
24    test_for_mpi_in_cpp_eeoptions() {
25        cpp_options=$1
26        test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_USE_MPI" || exit 99
27        test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_USE_MPI" || exit 99
28        test_for_string_in_file $cpp_options "^[ ]*#define.*ALWAYS_USE_MPI" || exit 99
29        test_for_string_in_file $cpp_options "^[ ]*#undef.*ALWAYS_USE_MPI" || exit 99
30    }
31    
32    # Search for particular string in a file. Return 1 if detected, 0 if not
33    # usage: test_for_string_in_file file string
34    test_for_string_in_file() {
35        file=$1
36        strng=$2
37        grep -i "$strng" $file > /dev/null 2>&1
38        RETVAL=$?
39        if test "x${RETVAL}" = x0 ; then
40            echo -n "Error: In $file there is an illegal line: "
41            grep -i "$strng" $file
42            return 1
43        fi
44        return 0
45    }
46    
47    # Read the $ROOTDIR/pkg/pkg_groups file and expand any references to
48    # the package list.
49    expand_pkg_groups() {
50        new_packages=
51        PKG_GROUPS=$ROOTDIR"/pkg/pkg_groups"
52        if test -r $PKG_GROUPS ; then
53            cat $PKG_GROUPS | sed -e 's/#.*$//g' | sed -e 's/:/ : /g' > ./p1.tmp
54            cat ./p1.tmp | $AWK '(NF>2 && $2==":"){ print $0 }' > ./p2.tmp
55            matched=0
56            for i in $PACKAGES ; do
57                line=`grep "^ *$i" ./p2.tmp`
58                RETVAL=$?
59                if test "x$RETVAL" = x0 ; then
60                    matched=1
61                    replace=`echo $line | $AWK '{ $1=""; $2=""; print $0 }'`
62                    echo "    replacing \"$i\" with: $replace"
63                    new_packages="$new_packages $replace"
64                else
65                    new_packages="$new_packages $i"
66                fi
67            done
68            PACKAGES=$new_packages
69            rm -f ./p[1,2].tmp
70        else
71            echo "Warning: can't read package groups definition file: $PKG_GROUPS"
72        fi
73    }
74    
75  # Guess possible config options for this host  # Guess possible config options for this host
76  find_possible_configs()  {  find_possible_configs()  {
77    
78      tmp1=`uname`"_"`uname -m`      tmp1=`uname`"_"`uname -m`
79      tmp2=`echo $tmp1 | sed -e 'y/ABCDEFGHIJKLMNOPQRSTUVWXYZ/abcdefghijklmnopqrstuvwxyz/'`      tmp2=`echo $tmp1 | sed -e 'y/ABCDEFGHIJKLMNOPQRSTUVWXYZ/abcdefghijklmnopqrstuvwxyz/'`
80      PLATFORM=`echo $tmp2 | sed -e 's/i[3-6]86/ia32/'`      tmp3=`echo $tmp2 | sed -e 's/power macintosh/ppc/'`
81        tmp1=`echo $tmp3 | sed -e 's|x86_64|amd64|'`
82        tmp2=`echo $tmp1 | sed -e 's/i[3-6]86/ia32/' | sed -e 's/athlon/ia32/'`
83        PLATFORM=$tmp2
84      OFLIST=`(cd $ROOTDIR/tools/build_options; ls | grep "^$PLATFORM")`      OFLIST=`(cd $ROOTDIR/tools/build_options; ls | grep "^$PLATFORM")`
85      echo "  The platform appears to be:  $PLATFORM"      echo "  The platform appears to be:  $PLATFORM"
 #     if test "x$OFLIST" = x ; then  
 #       echo "  No pre-defined options files were found matching this platform"  
 #       echo "  but examples for other platforms can be found in:"  
 #       echo "    $ROOTDIR/tools/build_options"  
 #     else  
 #       echo "  Options files (located in $ROOTDIR/tools/build_options) that"  
 #       echo "  may work with this machine are:"  
 #       for i in $OFLIST ; do  
 #           echo "    $i"  
 #       done  
 #     fi  
86            
87      echo "test" > test      echo "test" > test
88      ln -s ./test link      ln -s ./test link
# Line 45  find_possible_configs()  { Line 100  find_possible_configs()  {
100          CPP="cpp -traditional -P"          CPP="cpp -traditional -P"
101      fi      fi
102    
103        # makedepend is not always available
104        if test "x${MAKEDEPEND}" = x ; then
105          which makedepend >& /dev/null
106          RETVAL=$?
107          if test "x${RETVAL}" = x1 ; then
108             echo "    makedepend was not found. Using xmakedpend instead."
109             MAKEDEPEND='$(TOOLSDIR)/xmakedepend'
110          fi
111        fi
112    
113      # look for possible fortran compilers      # look for possible fortran compilers
114      tmp="$MITGCM_FC $FC g77 f77 pgf77 pgf95 ifc f90 f95 mpif77 mpf77 mpxlf95"      tmp="$MITGCM_FC $FC efc g77 f77 pgf77 pgf95 ifc f90 f95 mpif77 mpf77 mpxlf95"
115      p_FC=      p_FC=
116      for c in $tmp ; do      for c in $tmp ; do
117          rm -f ./hello.f ./hello          rm -f ./hello.f ./hello
# Line 63  EOF Line 128  EOF
128              p_FC="$p_FC $c"              p_FC="$p_FC $c"
129          fi          fi
130      done      done
131        rm -f ./hello.f ./hello
132      if test "x${p_FC}" = x ; then      if test "x${p_FC}" = x ; then
133          cat 1>&2 <<EOF          cat 1>&2 <<EOF
134    
# Line 78  EOF Line 144  EOF
144          echo "  The possible FORTRAN compilers found in your path are:"          echo "  The possible FORTRAN compilers found in your path are:"
145          echo "   "$p_FC          echo "   "$p_FC
146          if test "x$FC" = x ; then          if test "x$FC" = x ; then
147              FC=`echo $p_FC | awk '{print $1}'`              FC=`echo $p_FC | $AWK '{print $1}'`
148          fi          fi
149      fi      fi
150    
# Line 144  get_pdepend_list()  { Line 210  get_pdepend_list()  {
210      #  strip the comments and then convert the dependency file into      #  strip the comments and then convert the dependency file into
211      #  two arrays: PNAME, DNAME      #  two arrays: PNAME, DNAME
212      cat $1 | sed -e 's/#.*$//g' \      cat $1 | sed -e 's/#.*$//g' \
213          | awk 'BEGIN{nn=0;} (NF>0){ for(i=2;i<=NF;i++){nn++; print "PNAME["nn"]="$1"\nDNAME["nn"]="$i} }' \          | $AWK 'BEGIN{nn=0;} (NF>0){ for(i=2;i<=NF;i++){nn++; print "PNAME["nn"]="$1"\nDNAME["nn"]="$i} }' \
214          > ./.pd_tmp          > ./.pd_tmp
215      source ./.pd_tmp      . ./.pd_tmp
216      rm -f ./.pd_tmp      rm -f ./.pd_tmp
217    
218      echo -n "PNAME = "${}      echo -n "PNAME = "${}
# Line 155  get_pdepend_list()  { Line 221  get_pdepend_list()  {
221    
222  #  Explain usage  #  Explain usage
223  usage()  {  usage()  {
224      echo  cat <<EOF
225      echo "Usage: "$0" [OPTIONS]"  
226      echo "  where [OPTIONS] can be:"  Usage: "$0" [OPTIONS]
227      echo    where [OPTIONS] can be:
228      echo "    -help | --help | -h | --h"  
229      echo "    -nooptfile | --nooptfile"      -help | --help | -h | --h
230      echo "      -optfile NAME | --optfile NAME | -of NAME | --of NAME"            Print this help message and exit.
231      echo "      -optfile=NAME | --optfile=NAME | -of=NAME | --of=NAME"  
232      echo "    -pdepend NAME | --pdepend NAME"      -nooptfile | --nooptfile
233      echo "      -pdepend=NAME | --pdepend=NAME"        -optfile NAME | --optfile NAME | -of NAME | --of NAME
234      echo "    -pdefault NAME | --pdefault NAME"        -optfile=NAME | --optfile=NAME | -of=NAME | --of=NAME
235      echo "      -pdefault=NAME | --pdefault=NAME"            Use "NAME" as the optfile.  By default, an attempt will be
236      echo "    -make NAME | -m NAME"            made to find an appropriate "standard" optfile in the
237      echo "      --make=NAME | -m=NAME"            tools/build_options/ directory.
238      echo "    -makefile NAME | -mf NAME"  
239      echo "      --makefile=NAME | -mf=NAME"      -pdepend NAME | --pdepend NAME
240      echo "    -platform NAME | --platform NAME | -pl NAME | --pl NAME"        -pdepend=NAME | --pdepend=NAME
241      echo "      -platform=NAME | --platform=NAME | -pl=NAME | --pl=NAME"            Get package dependency information from "NAME".
242      echo "    -rootdir NAME | --rootdir NAME | -rd NAME | --rd NAME"  
243      echo "      -rootdir=NAME | --rootdir=NAME | -rd=NAME | --rd=NAME"      -pdefault NAME | --pdefault NAME
244      echo "    -mods NAME | --mods NAME | -mo NAME | --mo NAME"        -pdefault=NAME | --pdefault=NAME
245      echo "      -mods=NAME | --mods=NAME | -mo=NAME | --mo=NAME"            Get the default package list from "NAME".
246      echo "    -disable NAME | --disable NAME"  
247      echo "      -disable=NAME | --disable=NAME"      -make NAME | -m NAME
248      echo "    -enable NAME | --enable NAME"        --make=NAME | -m=NAME
249      echo "      -enable=NAME | --enable=NAME"            Use "NAME" for the MAKE program. The default is "make" but
250      echo "    -noopt NAME | --noopt NAME"            many platforms, "gmake" is the preferred choice.
251      echo "      -noopt=NAME | --noopt=NAME"  
252  #    echo "    -cpp NAME | --cpp NAME"      -makefile NAME | -mf NAME
253  #    echo "      -cpp=NAME | --cpp=NAME"        --makefile=NAME | -mf=NAME
254      echo "    -fortran NAME | --fortran NAME | -fc NAME | --fc NAME"            Call the makefile "NAME".  The default is "Makefile".
255      echo "      -fc=NAME | --fc=NAME"  
256      echo "    -[no]ieee | --[no]ieee"      -rootdir NAME | --rootdir NAME | -rd NAME | --rd NAME
257      echo "    -[no]mpi | --[no]mpi"        -rootdir=NAME | --rootdir=NAME | -rd=NAME | --rd=NAME
258      echo "    -[no]jam | --[no]jam"            Specify the location of the MITgcm ROOTDIR as "NAME".
259      echo            By default, genamke will try to find the location by
260      echo "  and NAME is a string such as:"            looking in parent directories (up to the 5th parent).
261      echo  
262      echo "    --enable pkg1   --enable 'pkg1 pkg2'   --enable 'pkg1 pkg2 pkg3'"      -mods NAME | --mods NAME | -mo NAME | --mo NAME
263      echo "    -mods=dir1   -mods='dir1'   -mods='dir1 dir2 dir3'"        -mods=NAME | --mods=NAME | -mo=NAME | --mo=NAME
264      echo "    -foptim='-Mvect=cachesize:512000,transform -xtypemap=real:64,double:64,integer:32'"            Here, "NAME" specifies a list of directories that are
265      echo            used for additional source code.  Files found in the
266      echo "  which, depending upon your shell, may need to be single-quoted"            "mods list" are given preference over files of the same
267      echo "  if it contains spaces, dashes, or other special characters."            name found elsewhere.
268    
269        -disable NAME | --disable NAME
270          -disable=NAME | --disable=NAME
271              Here "NAME" specifies a list of packages that we don't
272              want to use.  If this violates package dependencies,
273              genamke will exit with an error message.
274    
275        -enable NAME | --enable NAME
276          -enable=NAME | --enable=NAME
277              Here "NAME" specifies a list of packages that we wish
278              to specifically enable.  If this violates package
279              dependencies, genamke will exit with an error message.
280    
281        -standarddirs NAME | --standarddirs NAME
282          -standarddirs=NAME | --standarddirs=NAME
283              Here, "NAME" specifies a list of directories to be
284              used as the "standard" code.
285    
286        -fortran NAME | --fortran NAME | -fc NAME | --fc NAME
287          -fc=NAME | --fc=NAME
288              Use "NAME" as the fortran compiler.  By default, genmake
289              will search for a working compiler by trying a list of
290              "usual suspects" such as g77, f77, etc.
291    
292        -[no]ieee | --[no]ieee
293              Do or don't use IEEE numerics.  Note that this option
294              *only* works if it is supported by the OPTFILE that
295              is being used.
296    
297      While it is most often a single word, the "NAME" variables specified
298      above can in many cases be a space-delimited string such as:
299    
300        --enable pkg1   --enable 'pkg1 pkg2'   --enable 'pkg1 pkg2 pkg3'
301        -mods=dir1   -mods='dir1'   -mods='dir1 dir2 dir3'
302        -foptim='-Mvect=cachesize:512000,transform -xtypemap=real:64,double:64,integer:32'
303    
304      which, depending upon your shell, may need to be single-quoted.
305    
306      For more detailed genmake documentation, please see:
307    
308        http://mitgcm.org/devel_HOWTO/
309    
310    EOF
311    
312      exit 1      exit 1
313  }  }
314    
315  #eh3 # This is the generic configuration.  #  Build a CPP macro to automate calling C routines from FORTRAN
316  #eh3 set LN         = ( 'ln -s' )  get_fortran_c_namemangling()  {
317  #eh3 set CPP        = ( '/lib/cpp -P' )      default_nm="#define FC_NAMEMANGLE(X) X ## _"
318  #eh3 set S64        = ( '$(TOOLSDIR)/set64bitConst.sh' )      
319  #eh3 set KPP        = (  )      cat > genmake_test.c <<EOF
320  #eh3 set FC         = ( 'f77' )  void tcall( char * string ) { tsub( string ); }
321  #eh3 set LINK       = $FC  EOF
322  #eh3 set MAKEDEPEND = ( 'makedepend' )      $MAKE genmake_test.o >> genmake_warnings 2>&1
323  #eh3 set INCLUDES   = ( -I. )      RETVAL=$?
324  #eh3 set FFLAGS     = (  )      if test "x$RETVAL" != x0 ; then
325  #eh3 set FOPTIM     = (  )          FC_NAMEMANGLE=$default_nm
326  #eh3 set CFLAGS     = (  )          cat <<EOF>> genmake_errors
327  #eh3 set KFLAGS1    = (  )  
328  #eh3 set KFLAGS2    = (  )  WARNING: C test compile fails
329  #eh3 set LIBS       = (  )  WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
330  #eh3 set KPPFILES   = (  )  WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here
331  #eh3 if (! $?NOOPTFILES ) set NOOPTFILES = (  )  EOF
332  #eh3 if (! $?NOOPTFLAGS ) set NOOPTFLAGS = (  )          return 1
333        fi
334        c_tcall=`nm genmake_test.o | grep 'T ' | grep tcall | cut -d ' ' -f 3`
335        RETVAL=$?
336        if test "x$RETVAL" != x0 ; then
337            FC_NAMEMANGLE=$default_nm
338            cat <<EOF>> genmake_warnings
339    
340    WARNING: The "nm" command failed.
341    WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
342    WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here
343    EOF
344            return 1
345        fi
346        cat > genmake_tcomp.f <<EOF
347          subroutine tcall( string )
348          character*(*) string
349          call tsub( string )
350          end
351    EOF
352        $FC $FFLAGS $DEFINES -c genmake_tcomp.f >> genmake_warnings 2>&1
353        RETVAL=$?
354        if test "x$RETVAL" != x0 ; then
355            FC_NAMEMANGLE=$default_nm
356            cat <<EOF>> genmake_warnings
357    
358    WARNING: FORTRAN test compile fails -- please see "genmake_errors"
359    WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
360    WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here.
361    EOF
362            return 1
363        fi
364        f_tcall=`nm genmake_tcomp.o | grep 'T ' | grep tcall | cut -d ' ' -f 3`
365        RETVAL=$?
366        if test "x$RETVAL" != x0 ; then
367            FC_NAMEMANGLE=$default_nm
368            cat <<EOF>> genmake_warnings
369    
370    WARNING: The "nm" command failed.
371    WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
372    WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here.
373    EOF
374            return 1
375        fi
376    
377        c_a=`echo $c_tcall | sed -e 's|tcall|Y Y|' | cut -d ' ' -f 1 | sed -e 's|Y||'`
378        f_a=`echo $f_tcall | sed -e 's|tcall|Y Y|' | cut -d ' ' -f 1 | sed -e 's|Y||'`
379        c_b=`echo $c_tcall | sed -e 's|tcall|Y Y|' | cut -d ' ' -f 2 | sed -e 's|Y||'`
380        f_b=`echo $f_tcall | sed -e 's|tcall|Y Y|' | cut -d ' ' -f 2 | sed -e 's|Y||'`
381    
382        nmangle="X"
383        if test "x$c_a" != "x$f_a" ; then
384            comm="echo x$f_a | sed -e 's|x$c_a||'"
385            a=`eval $comm`
386            nmangle="$a ## $nmangle"
387        fi
388        if test "x$c_b" != "x$f_b" ; then
389            comm="echo x$f_b | sed -e 's|x$c_b||'"
390            b=`eval $comm`
391            nmangle="$nmangle ## $b"
392        fi
393    
394        FC_NAMEMANGLE="#define FC_NAMEMANGLE(X)  $nmangle"
395    
396        #  cleanup the testing files
397        rm -f genmake_tcomp.* genmake_test.*
398    }
399    
400    
401    check_HAVE_CLOC()  {
402        get_fortran_c_namemangling
403        cat <<EOF > genmake_tc_1.c
404    $FC_NAMEMANGLE
405    #include <stdio.h>
406    #include <stdlib.h>
407    #include <unistd.h>
408    #include <assert.h>
409    #include <sys/time.h>
410    void FC_NAMEMANGLE(cloc) ( double *curtim )
411    {
412     struct timeval tv1;
413     gettimeofday(&tv1 , (void *)NULL );
414     *curtim =  (double)((tv1.tv_usec)+(tv1.tv_sec)*1.E6);
415     *curtim = *curtim/1.E6;
416    }
417    EOF
418        make genmake_tc_1.o >> genmake_tc.log 2>&1
419        RET_C=$?
420        cat <<EOF > genmake_tc_2.f
421          program hello
422          Real*8 wtime
423          external cloc
424          call cloc(wtime)
425          print *," HELLO WORLD", wtime
426          end program hello
427    EOF
428        $FC $FFLAGS -o genmake_tc genmake_tc_2.f genmake_tc_1.o >> genmake_tc.log 2>&1
429        RET_F=$?
430        test -x ./genmake_tc  &&  ./genmake_tc >> genmake_tc.log 2>&1
431        RETVAL=$?
432        if test "x$RETVAL" = x0 ; then
433            HAVE_CLOC=t
434            DEFINES="$DEFINES -DHAVE_CLOC"
435        fi
436        rm -f genmake_tc*
437    }
438    
439    
440    check_netcdf_libs()  {
441        cat <<EOF > genmake_tnc.F
442          program fgennc
443    #include "netcdf.inc"
444          integer iret, ncid, xid
445          iret = nf_create('genmake_tnc.nc', NF_CLOBBER, ncid)
446          IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret)
447          iret = nf_def_dim(ncid, 'X', 11, xid)
448          IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret)
449          iret = nf_close(ncid)
450          IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret)
451          end
452    EOF
453        $CPP genmake_tnc.F > genmake_tnc.f  \
454            &&  $FC $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.f $LIBS >> genmake_tnc.log 2>&1
455        RET_COMPILE=$?
456        test -x ./genmake_tnc  &&  ./genmake_tnc >> genmake_tnc.log 2>&1
457        RETVAL=$?
458        if test "x$RET_COMPILE" = x0 -a "x$RETVAL" = x0 ; then
459            HAVE_NETCDF=t
460        else
461            # try again with "-lnetcdf" added to the libs
462            $CPP genmake_tnc.F > genmake_tnc.f  \
463                &&  $FC $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.f \
464                $LIBS -lnetcdf >> genmake_tnc_2.log 2>&1
465            RET_COMPILE=$?
466            test -x ./genmake_tnc  &&  ./genmake_tnc >> genmake_tnc.log 2>&1
467            RETVAL=$?
468            if test "x$RET_COMPILE" = x0 -a "x$RETVAL" = x0 ; then
469                LIBS="$LIBS -lnetcdf"
470                HAVE_NETCDF=t
471            else
472                cat genmake_tnc.log >> genmake_warnings
473            fi
474        fi
475        rm -f genmake_tnc*
476    }
477    
478    
479  #  Set defaults here  #  Set defaults here
480  COMMANDL="$0 $@"  COMMANDL="$0 $@"
# Line 229  LN= Line 484  LN=
484  S64=  S64=
485  KPP=  KPP=
486  FC=  FC=
487    CPP=
488  LINK=  LINK=
489  DEFINES="-DWORDLENGTH=4"  # DEFINES="-DWORDLENGTH=4"
490    DEFINES=
491  PACKAGES=  PACKAGES=
492  ENABLE=  ENABLE=
493  DISABLE=  DISABLE=
# Line 251  KPPFILES= Line 508  KPPFILES=
508  NOOPTFILES=  NOOPTFILES=
509  NOOPTFLAGS=  NOOPTFLAGS=
510    
511    # DEFINES checked by test compilation
512    HAVE_SYSTEM=
513    HAVE_FDATE=
514    FC_NAMEMANGLE=
515    HAVE_CLOC=
516    HAVE_NETCDF=
517    
518  MODS=  MODS=
519  TOOLSDIR=  TOOLSDIR=
520  SOURCEDIRS=  SOURCEDIRS=
521  INCLUDEDIRS=  INCLUDEDIRS=
522    STANDARDDIRS="USE_THE_DEFAULT"
523    
524  PWD=`pwd`  PWD=`pwd`
525  MAKE=make  MAKE=make
526    AWK=awk
527  THISHOSTNAME=`hostname`  THISHOSTNAME=`hostname`
528  THISCWD=`pwd`  THISCWD=`pwd`
529  THISDATE=`date`  THISDATE=`date`
# Line 265  MACHINE=`uname -a` Line 531  MACHINE=`uname -a`
531  EXECUTABLE=  EXECUTABLE=
532  EXEHOOK=  EXEHOOK=
533  EXEDIR=  EXEDIR=
534    PACKAGES_CONF=
535    IEEE=
536    if test "x$MITGCM_IEEE" != x ; then
537        IEEE=$MITGCM_IEEE
538    fi
539    
540    AUTODIFF_PKG_USED=f
541    AD_OPTFILE=
542    TAF=
543    AD_TAF_FLAGS=
544    FTL_TAF_FLAGS=
545    SVD_TAF_FLAGS=
546    TAF_EXTRA=
547    TAMC=
548    AD_TAMC_FLAGS=
549    FTL_TAF_FLAGS=
550    SVD_TAMC_FLAGS=
551    TAMC_EXTRA=
552    
553    
554  #  The following state can be set directly by command-line switches  #  The following state can be set directly by command-line switches
555  gm_s1="OPTFILE PDEPEND PDEFAULT MAKEFILE PLATFORM ROOTDIR MODS DISABLE ENABLE NOOPT"  gm_s1="OPTFILE PDEPEND PDEFAULT MAKEFILE PLATFORM ROOTDIR MODS DISABLE ENABLE"
556  gm_s2="FC IEEE MPI JAM DUMPSTATE"  gm_s2="FC CPP IEEE MPI JAM DUMPSTATE STANDARDDIRS"
557    
558  #  The following state is not directly set by command-line switches  #  The following state is not directly set by command-line switches
559  gm_s3="LN S64 KPP LINK PACKAGES MAKEDEPEND PDEPEND PDEFAULT INCLUDES FFLAGS FOPTIM "  gm_s3="LN S64 KPP LINK PACKAGES MAKEDEPEND PDEPEND PDEFAULT INCLUDES FFLAGS FOPTIM "
560  gm_s4="CFLAGS KFLAGS1 KFLAGS2 LIBS KPPFILES NOOPTFILES NOOPTFLAGS"  gm_s4="CFLAGS KFLAGS1 KFLAGS2 LIBS KPPFILES NOOPTFILES NOOPTFLAGS"
561  gm_s5="TOOLSDIR SOURCEDIRS INCLUDEDIRS PWD MAKE THISHOSTNAME THISDATE MACHINE"  gm_s5="TOOLSDIR SOURCEDIRS INCLUDEDIRS PWD MAKE THISHOSTNAME THISDATE MACHINE"
562  gm_s6="EXECUTABLE EXEHOOK EXEDIR"  gm_s6="EXECUTABLE EXEHOOK EXEDIR PACKAGES_CONF"
563    gm_s7="HAVE_SYSTEM HAVE_FDATE FC_NAMEMANGLE"
564    
565  gm_state="COMMANDL $gm_s1 $gm_s2 $gm_s3 $gm_s4 $gm_s5 $gm_s6"  #  The following are all related to adjoint/tangent-linear stuff
566    gm_s10="AUTODIFF_PKG_USED AD_OPTFILE TAMC TAF AD_TAMC_FLAGS AD_TAF_FLAGS"
567    gm_s11="FTL_TAMC_FLAGS FTL_TAF_FLAGS SVD_TAMC_FLAGS SVD_TAF_FLAGS"
568    gm_s12="TAF_EXTRA TAMC_EXTRA"
569    
570    gm_state="COMMANDL $gm_s1 $gm_s2 $gm_s3 $gm_s4 $gm_s5 $gm_s6 $gm_s7"
571    gm_state="$gm_state $gm_s10 $gm_s11 $gm_s12"
572    
573    cat <<EOF
574    
575    GENMAKE :
576    
577    A program for GENerating MAKEfiles for the MITgcm project.  For a
578    quick list of options, use "genmake -h" or for more detail see:
579    
580      http://mitgcm.org/devel_HOWTO/
581    
582    EOF
583    
 echo  
584  echo "===  Processing options files and arguments  ==="  echo "===  Processing options files and arguments  ==="
585  gm_local="./gm_local"  gm_local="genmake_local"
586    for i in . $MODS ; do
587        if test -r $i/$gm_local ; then
588            . $i/$gm_local
589            break
590        fi
591    done
592  echo -n "  getting local config information:  "  echo -n "  getting local config information:  "
593  if test -e $gm_local ; then  if test -e $gm_local ; then
594      echo "using $gm_local"      echo "using $gm_local"
595      source $gm_local      . $gm_local
596      # echo "DISABLE=$DISABLE"      # echo "DISABLE=$DISABLE"
597      # echo "ENABLE=$ENABLE"      # echo "ENABLE=$ENABLE"
598  else  else
# Line 303  fi Line 610  fi
610  #   n=$(( $n + 1 ))  #   n=$(( $n + 1 ))
611  #done  #done
612  #parse_options  #parse_options
   
613  ac_prev=  ac_prev=
614  for ac_option ; do  for ac_option ; do
615    
# Line 328  for ac_option ; do Line 634  for ac_option ; do
634          -optfile=* | --optfile=* | -of=* | --of=*)          -optfile=* | --optfile=* | -of=* | --of=*)
635              OPTFILE=$ac_optarg ;;              OPTFILE=$ac_optarg ;;
636                    
637            -adoptfile | --adoptfile | -adof | --adof)
638                ac_prev=AD_OPTFILE ;;
639            -adoptfile=* | --adoptfile=* | -adof=* | --adof=*)
640                AD_OPTFILE=$ac_optarg ;;
641            
642          -pdepend | --pdepend)          -pdepend | --pdepend)
643              ac_prev=PDEPEND ;;              ac_prev=PDEPEND ;;
644          -pdepend=* | --pdepend=*)          -pdepend=* | --pdepend=*)
# Line 348  for ac_option ; do Line 659  for ac_option ; do
659          -makefile=* | --makefile=* | -ma=* | --ma=*)          -makefile=* | --makefile=* | -ma=* | --ma=*)
660              MAKEFILE=$ac_optarg ;;              MAKEFILE=$ac_optarg ;;
661                    
662          -platform | --platform | -pl | --pl)          -platform | --platform | -pl | --pl | -platform=* | --platform=* | -pl=* | --pl=*)
663              ac_prev=PLATFORM ;;              echo "ERROR: The platform option has been removed.  Please specify"
664          -platform=* | --platform=* | -pl=* | --pl=*)              echo "  the build options using the \"optfile\" mechanism."
665              PLATFORM=$ac_optarg ;;              echo
666                usage
667                ;;
668                    
669          -rootdir | --rootdir | -rd | --rd)          -rootdir | --rootdir | -rd | --rd)
670              ac_prev=ROOTDIR ;;              ac_prev=ROOTDIR ;;
# Line 373  for ac_option ; do Line 686  for ac_option ; do
686          -enable=* | --enable=*)          -enable=* | --enable=*)
687              ENABLE=$ac_optarg ;;              ENABLE=$ac_optarg ;;
688                    
689          -noopt | --noopt)          -standarddirs | --standarddirs)
690              ac_prev=NOOPT ;;              ac_prev=STANDARDDIRS ;;
691          -noopt=* | --noopt=*)          -standarddirs=* | --standarddirs=*)
692              NOOPT=$ac_optarg ;;              STANDARDDIRS=$ac_optarg ;;
693            
694  #           -cpp | --cpp)  #           -cpp | --cpp)
695  #               ac_prev=cpp ;;  #               ac_prev=cpp ;;
696  #           -cpp=* | --cpp=*)  #           -cpp=* | --cpp=*)
# Line 389  for ac_option ; do Line 702  for ac_option ; do
702              FC=$ac_optarg ;;              FC=$ac_optarg ;;
703                    
704          -ieee | --ieee)          -ieee | --ieee)
705              IEEE=1 ;;              IEEE=true ;;
706          -noieee | --noieee)          -noieee | --noieee)
707              IEEE=0 ;;              IEEE= ;;
           
         -mpi | --mpi)  
             MPI=1 ;;  
         -nompi | --nompi)  
             MPI=0 ;;  
708                    
709          -jam | --jam)  #       -jam | --jam)
710              JAM=1 ;;  #           JAM=1 ;;
711          -nojam | --nojam)  #       -nojam | --nojam)
712              JAM=0 ;;  #           JAM=0 ;;
713                    
714          -ds | --ds)          -ds | --ds)
715              DUMPSTATE=t ;;              DUMPSTATE=t ;;
716                    
717            -taf_extra | --taf_extra)
718                ac_prev=TAF_EXTRA ;;
719            -taf_extra=* | --taf_extra=*)
720                TAF_EXTRA=$ac_optarg ;;
721    
722            -tamc_extra | --tamc_extra)
723                ac_prev=TAMC_EXTRA ;;
724            -tamc_extra=* | --tamc_extra=*)
725                TAMC_EXTRA=$ac_optarg ;;
726    
727          -*)          -*)
728              echo "Error: unrecognized option: "$ac_option              echo "Error: unrecognized option: "$ac_option
729              usage              usage
# Line 420  for ac_option ; do Line 738  for ac_option ; do
738            
739  done  done
740    
741    if test -f ./.genmakerc ; then
742        echo
743        echo "WARNING: genmake2 has detected a copy of the old-style \"./.genmakerc\""
744        echo "  file.  This file format is no longer supported.  Please see:"
745        echo
746        echo "    http://mitgcm.org/devel_HOWTO/"
747        echo
748        echo "  for directions on how to setup and use the new \"genmake2\" input"
749        echo "  files and send an email to MITgcm-support@mitgcm.org if you want help."
750        echo
751    fi
752    
753  if test "x${ROOTDIR}" = x ; then  if test "x${ROOTDIR}" = x ; then
754      if test "${PWD##/*/}" = "bin" -a -d ../model -a -d ../eesup -a -d ../pkg ; then      if test "${PWD##/*/}" = "bin" -a -d ../model -a -d ../eesup -a -d ../pkg ; then
755          ROOTDIR=".."          ROOTDIR=".."
# Line 458  fi Line 788  fi
788  if test "x$OPTFILE" != xNONE ; then  if test "x$OPTFILE" != xNONE ; then
789      if test -f "$OPTFILE" -a -r "$OPTFILE" ; then      if test -f "$OPTFILE" -a -r "$OPTFILE" ; then
790          echo "    using OPTFILE=\"$OPTFILE\""          echo "    using OPTFILE=\"$OPTFILE\""
791          source "$OPTFILE"          . "$OPTFILE"
792          RETVAL=$?          RETVAL=$?
793          if test "x$RETVAL" != x0 ; then          if test "x$RETVAL" != x0 ; then
794              echo -n "Error: failed to source OPTFILE \"$OPTFILE\""              echo -n "Error: failed to source OPTFILE \"$OPTFILE\""
# Line 466  if test "x$OPTFILE" != xNONE ; then Line 796  if test "x$OPTFILE" != xNONE ; then
796              exit 1              exit 1
797          fi          fi
798          if test "x$DUMPSTATE" != xf ; then          if test "x$DUMPSTATE" != xf ; then
799              cp -f $OPTFILE "gm_optfile"              cp -f $OPTFILE "genmake_optfile"
800          fi          fi
801      else      else
802          echo "Error: can't read OPTFILE=\"$OPTFILE\""          echo "Error: can't read OPTFILE=\"$OPTFILE\""
# Line 474  if test "x$OPTFILE" != xNONE ; then Line 804  if test "x$OPTFILE" != xNONE ; then
804      fi      fi
805  fi  fi
806    
807  #  Check that FC, LINK, CPP, and S64 are defined.  If not, complain  echo "  getting AD_OPTFILE information:  "
808  #  and abort!  if test "x${AD_OPTFILE}" = x ; then
809        if test "x$MITGCM_AD_OF" = x ; then
810            AD_OPTFILE=$ROOTDIR/tools/adjoint_options/adjoint_default
811        else
812            AD_OPTFILE=$MITGCM_AD_OF
813        fi
814    fi
815    if test "x${AD_OPTFILE}" != xNONE ; then
816        if test -f "$AD_OPTFILE" -a -r "$AD_OPTFILE" ; then
817            echo "    using AD_OPTFILE=\"$AD_OPTFILE\""
818            . "$AD_OPTFILE"
819            RETVAL=$?
820            if test "x$RETVAL" != x0 ; then
821                echo -n "Error: failed to source AD_OPTFILE \"$AD_OPTFILE\""
822                echo "--please check that variable syntax is bash-compatible"
823                exit 1
824            fi
825            if test "x$DUMPSTATE" != xf ; then
826                cp -f $AD_OPTFILE "genmake_ad_optfile"
827            fi
828        else
829            echo "Error: can't read AD_OPTFILE=\"$AD_OPTFILE\""
830            exit 1
831        fi
832    fi
833    
834    #  Check that FC, LINK, CPP, S64, LN, and MAKE are defined.  If not,
835    #  either set defaults or complain and abort!
836  if test "x$FC" = x ; then  if test "x$FC" = x ; then
837      cat <<EOF 1>&2      cat <<EOF 1>&2
838    
839  Error: no Fortran compiler: please specify using one of the following:  Error: no Fortran compiler: please specify using one of the following:
840    1) within the options file ("FC=...") as specified by "-of=OPTFILE"    1) within the options file ("FC=...") as specified by "-of=OPTFILE"
841    2) the "-fc=XXX" command-line option    2) the "-fc=XXX" command-line option
842    3) the "./gm_local" file    3) the "./genmake_local" file
843  EOF  EOF
844      exit 1      exit 1
845  fi  fi
846  if test "x$LINK" = x ; then  if test "x$LINK" = x ; then
847      LINK=$FC      LINK=$FC
848  fi  fi
849    if test "x$MAKE" = x ; then
850        MAKE="make"
851    fi
852  if test "x$CPP" = x ; then  if test "x$CPP" = x ; then
853      CPP="cpp"      CPP=cpp
854  fi  fi
855  echo "#define A a" | cpp > test_cpp 2>&1  #EH3 === UGLY ===
856    #  The following an ugly little hack to check for $CPP in /lib/ and it
857    #  should eventually be replaced with a more general function that
858    #  searches a combo of the user's path and a list of "usual suspects"
859    #  to find the correct location for binaries such as $CPP.
860    for i in " " "/lib/" ; do
861        echo "#define A a" | $i$CPP > test_cpp 2>&1 && CPP=$i$CPP
862    done
863    #EH3 === UGLY ===
864    echo "#define A a" | $CPP > test_cpp 2>&1
865  RETVAL=$?  RETVAL=$?
866  if test "x$RETVAL" != x0 ; then  if test "x$RETVAL" != x0 ; then
867      cat <<EOF 1>&2      cat <<EOF 1>&2
# Line 500  if test "x$RETVAL" != x0 ; then Line 869  if test "x$RETVAL" != x0 ; then
869  Error: C pre-processor "$CPP" failed the test case: please specify using:  Error: C pre-processor "$CPP" failed the test case: please specify using:
870    
871    1) within the options file ("CPP=...") as specified by "-of=OPTFILE"    1) within the options file ("CPP=...") as specified by "-of=OPTFILE"
872    2) the "./gm_local" file    2) the "./genmake_local" file
873      3) with the CPP environment variable
874    
875  EOF  EOF
876      exit 1      exit 1
# Line 510  fi Line 880  fi
880  if test "x$MAKEDEPEND" = x ; then  if test "x$MAKEDEPEND" = x ; then
881      MAKEDEPEND=makedepend      MAKEDEPEND=makedepend
882  fi  fi
883    if test "x$LN" = x ; then
884        LN="ln -s"
885    fi
886    echo "test" > genmake_test_ln
887    $LN genmake_test_ln genmake_tlink
888    RETVAL=$?
889    if test "x$RETVAL" != x0 ; then
890        cat <<EOF 1>&2
891    
892    Error: The command "ln -s" failed -- please specify a working soft-link
893      command in the optfile.
894    
895    EOF
896        exit 1
897    fi
898    rm -f genmake_test_ln genmake_tlink
899    
900    
901    printf "\n===  Checking system libraries  ===\n"
902    echo -n "  Do we have the system() command using $FC...  "
903    cat > genmake_tcomp.f <<EOF
904          program hello
905          call system('echo hi')
906          end
907    EOF
908    $FC $FFLAGS $DEFINES -o genmake_tcomp genmake_tcomp.f > genmake_tcomp.log 2>&1
909    RETVAL=$?
910    if test "x$RETVAL" = x0 ; then
911        HAVE_SYSTEM=t
912        DEFINES="$DEFINES -DHAVE_SYSTEM"
913        echo "yes"
914    else
915        HAVE_SYSTEM=
916        echo "no"
917    fi
918    rm -f genmake_tcomp*
919    
920    echo -n "  Do we have the fdate() command using $FC...  "
921    cat > genmake_tcomp.f <<EOF
922          program hello
923          CHARACTER(128) string
924          string = ' '
925          call fdate( string )
926          print *, string
927          end
928    EOF
929    $FC $FFLAGS $DEFINES -o genmake_tcomp genmake_tcomp.f > genmake_tcomp.log 2>&1
930    RETVAL=$?
931    if test "x$RETVAL" = x0 ; then
932        HAVE_FDATE=t
933        DEFINES="$DEFINES -DHAVE_FDATE"
934        echo "yes"
935    else
936        HAVE_FDATE=
937        echo "no"
938    fi
939    rm -f genmake_tcomp*
940    
941    echo -n "  Can we call simple C routines (here, \"cloc()\") using $FC...  "
942    check_HAVE_CLOC
943    if test "x$HAVE_CLOC" != x ; then
944        echo "yes"
945    else
946        echo "no"
947    fi
948    rm -f genmake_t*
949    
950    echo -n "  Can we create NetCDF-enabled binaries...  "
951    check_netcdf_libs
952    if test "x$HAVE_NETCDF" != x ; then
953        echo "yes"
954    else
955        echo "no"
956    fi
957    
958    
959  printf "\n===  Setting defaults  ===\n"  printf "\n===  Setting defaults  ===\n"
960  echo -n "  Adding MODS directories:  "  echo -n "  Adding MODS directories:  "
# Line 549  if test "x${TOOLSDIR}" = x ; then Line 994  if test "x${TOOLSDIR}" = x ; then
994      TOOLSDIR="$ROOTDIR/tools"      TOOLSDIR="$ROOTDIR/tools"
995  fi  fi
996  if test ! -d ${TOOLSDIR} ; then  if test ! -d ${TOOLSDIR} ; then
997      echo "Error: the specified $TOOLSDIR (\"$TOOLSDIR\") does not exist!"      echo "Error: the specified TOOLSDIR (\"$TOOLSDIR\") does not exist!"
998      exit 1      exit 1
999  fi  fi
1000  if test "x$S64" = x ; then  if test "x$S64" = x ; then
1001      S64='$(TOOLSDIR)/set64bitConst.sh'      S64='$(TOOLSDIR)/set64bitConst.sh'
1002  fi  fi
1003    THIS_SCRIPT=`echo ${0} | sed 's:'$TOOLSDIR':\$(TOOLSDIR):'`
1004    
1005  EXECUTABLE=${EXECUTABLE:-mitgcmuv}  EXECUTABLE=${EXECUTABLE:-mitgcmuv}
1006    
# Line 563  EXECUTABLE=${EXECUTABLE:-mitgcmuv} Line 1009  EXECUTABLE=${EXECUTABLE:-mitgcmuv}
1009  #  they appear as regular source code  #  they appear as regular source code
1010  if test -r $ROOTDIR"/eesupp/src/Makefile" ; then  if test -r $ROOTDIR"/eesupp/src/Makefile" ; then
1011      echo "  Making source files in eesupp from templates"      echo "  Making source files in eesupp from templates"
1012      $MAKE -C $ROOTDIR"/eesupp/src/" > make_eesupp.errors 2>&1      ( cd $ROOTDIR"/eesupp/src/" && $MAKE ) > make_eesupp.errors 2>&1
1013      RETVAL=$?      RETVAL=$?
1014      if test "x${RETVAL}" = x0 ; then      if test "x${RETVAL}" = x0 ; then
1015          rm -f make_eesupp.errors          rm -f make_eesupp.errors
1016      else      else
1017          echo "Error: problem encountered while building source files in eesupp:"          echo "Error: problem encountered while building source files in eesupp:"
1018          cat make_eesupp.errors          cat make_eesupp.errors 1>&2
1019          exit 1          exit 1
1020      fi      fi
1021  fi  fi
1022    
1023    #same for exch2
1024    if test -r $ROOTDIR"/pkg/exch2/Makefile" ; then
1025        echo "  Making source files in exch2 from  templates"
1026        ( cd $ROOTDIR"/pkg/exch2/" && $MAKE ) > make_exch2.errors 2>&1
1027        RETVAL=$?
1028        if test "x${RETVAL}" = x0 ; then
1029            rm -f make_exch2.errors
1030        else
1031            echo "Error: problem encountered while building source files in exch2:"
1032            cat make_exch2.errors 1>&2
1033            exit 1
1034        fi
1035    fi
1036    
1037  printf "\n===  Determining package settings  ===\n"  printf "\n===  Determining package settings  ===\n"
1038  if  test "x${PDEPEND}" = x ; then  if  test "x${PDEPEND}" = x ; then
1039      tmp=$ROOTDIR"/pkg/pkg_depend"      tmp=$ROOTDIR"/pkg/pkg_depend"
# Line 593  echo "  getting package dependency info Line 1053  echo "  getting package dependency info
1053  #  Strip the comments and then convert the dependency file into  #  Strip the comments and then convert the dependency file into
1054  #  two arrays: PNAME, DNAME  #  two arrays: PNAME, DNAME
1055  cat $PDEPEND | sed -e 's/#.*$//g' \  cat $PDEPEND | sed -e 's/#.*$//g' \
1056      | awk 'BEGIN{nn=-1;} (NF>0){ for(i=2;i<=NF;i++){nn++; print "PNAME_"nn"="$1"\nDNAME_"nn"="$i}} END{print "nname="nn}' \      | $AWK 'BEGIN{nn=-1;} (NF>0){ for(i=2;i<=NF;i++){nn++; print "PNAME_"nn"="$1"\nDNAME_"nn"="$i}} END{print "nname="nn}' \
1057      > ./.pd_tmp      > ./.pd_tmp
1058  RETVAL=$?  RETVAL=$?
1059  if test ! "x${RETVAL}" = x0 ; then  if test ! "x${RETVAL}" = x0 ; then
1060      echo "Error: unable to parse package dependencies -- please check PDEPEND=\"$PDEPEND\""      echo "Error: unable to parse package dependencies -- please check PDEPEND=\"$PDEPEND\""
1061      exit 1      exit 1
1062  fi  fi
1063  source ./.pd_tmp  . ./.pd_tmp
1064  rm -f ./.pd_tmp  rm -f ./.pd_tmp
1065    
1066  echo  -n "  checking default package list:  "  #  Search for default packages.  Note that a "$ROOTDIR/pkg/pkg_groups"
1067    #  file should eventually be added so that, for convenience, one can
1068    #  specify groups of packages using names like "ocean" and "atmosphere".
1069    echo "  checking default package list:  "
1070    if test "x${PDEFAULT}" = x ; then
1071        for i in "." $MODS ; do
1072            if test -r $i"/packages.conf" ; then
1073                    PDEFAULT=$i"/packages.conf"
1074                    break
1075            fi
1076        done
1077    fi
1078  if test "x${PDEFAULT}" = x ; then  if test "x${PDEFAULT}" = x ; then
1079      PDEFAULT="$ROOTDIR/pkg/pkg_default"      PDEFAULT="$ROOTDIR/pkg/pkg_default"
1080  fi  fi
1081  if test "x${PDEFAULT}" = xNONE ; then  if test "x${PDEFAULT}" = xNONE ; then
1082      echo "default packages file disabled"      echo "    default packages file disabled"
1083  else  else
1084      if test ! -r $PDEFAULT ; then      if test ! -r $PDEFAULT ; then
         echo ""  
1085          echo "Warning:  can't read default packages from PDEFAULT=\"$PDEFAULT\""          echo "Warning:  can't read default packages from PDEFAULT=\"$PDEFAULT\""
1086      else      else
1087          echo "  using PDEFAULT=\"$PDEFAULT\""          echo "    using PDEFAULT=\"$PDEFAULT\""
1088          #  Strip the comments and add all the names          #  Strip the comments and add all the names
1089          def=`cat $PDEFAULT | sed -e 's/#.*$//g' | awk '(NF>0){print $0}'`          def=`cat $PDEFAULT | sed -e 's/#.*$//g' | $AWK '(NF>0){print $0}'`
1090          RETVAL=$?          RETVAL=$?
1091          if test "x${RETVAL}" != x0 ; then          if test "x${RETVAL}" != x0 ; then
1092              echo -n "Error: can't parse default package list "              echo -n "Error: can't parse default package list "
# Line 626  else Line 1096  else
1096          for i in $def ; do          for i in $def ; do
1097              PACKAGES="$PACKAGES $i"              PACKAGES="$PACKAGES $i"
1098          done          done
1099          echo "    packages are:  $PACKAGES"          echo "    before group expansion packages are: $PACKAGES"
1100            expand_pkg_groups
1101            echo "    after group expansion packages are:  $PACKAGES"
1102      fi      fi
1103  fi  fi
1104    
# Line 645  for p in $PACKAGES ; do Line 1117  for p in $PACKAGES ; do
1117  done  done
1118  PACKAGES="$pack"  PACKAGES="$pack"
1119  echo "  applying ENABLE settings"  echo "  applying ENABLE settings"
1120  rm -f ./.tmp_pack  echo "" > ./.tmp_pack
1121  PACKAGES="$PACKAGES $ENABLE"  PACKAGES="$PACKAGES $ENABLE"
1122  for i in $PACKAGES ; do  for i in $PACKAGES ; do
1123      if test ! -d "$ROOTDIR/pkg/$i" ; then      if test ! -d "$ROOTDIR/pkg/$i" ; then
# Line 736  for i in $PACKAGES ; do Line 1208  for i in $PACKAGES ; do
1208      if test -d $adr ; then      if test -d $adr ; then
1209          SOURCEDIRS="$SOURCEDIRS $adr"          SOURCEDIRS="$SOURCEDIRS $adr"
1210          INCLUDEDIRS="$INCLUDEDIRS $adr"          INCLUDEDIRS="$INCLUDEDIRS $adr"
1211            if test "x$i" = xautodiff ; then
1212                AUTODIFF_PKG_USED=t
1213            fi
1214      else      else
1215          echo "Error: the directory \"$adr\" for package $i doesn't exist"          echo "Error: the directory \"$adr\" for package $i doesn't exist"
1216          exit 1          exit 1
1217      fi      fi
1218  done  done
1219    
1220  #  This is compatible with the old genmake.  The "DISABLE_*" flags  #  Build MNC templates and check for ability to build and use NetCDF
1221  #  need to be replaced by the "ALLOW_*" flags set below.  echo $PACKAGES | grep ' mnc ' > /dev/null 2>&1
1222  #  RETVAL=$?
1223  # echo -n "  Setting package-specific CPP flags:  "  if test "x$RETVAL" = x0 ; then
1224  # pkrm=( mom_fluxform mom_vecinv generic_advdiff )      ( cd $ROOTDIR"/pkg/mnc" && $MAKE templates ) > make_mnc.errors 2>&1
1225  # pkrmdef=( -DDISABLE_MOM_FLUXFORM -DDISABLE_MOM_VECINV -DDISABLE_GENERIC_ADVDIFF -DDISABLE_DEBUGMODE )      RETVAL=$?
1226  # echo -n "  "      if test "x${RETVAL}" = x0 ; then
1227  # i=0          rm -f make_mnc.errors
1228  # while test $i -lt "${#pkrm[@]}" ; do      else
1229  #     echo "$PACKAGES" | grep "${pk[$i]}" > /dev/null 2>&1          echo "Error: problem encountered while building source files in pkg/mnc:"
1230  #     RETVAL=$?          cat make_mnc.errors 1>&2
1231  #     if test "x$RETVAL" = x1 ; then          exit 1
1232  #       DEFINES="$DEFINES ${pkdef[$i]}"      fi
1233  #       echo -n " ${pkdef[$i]}"      if test "x$HAVE_NETCDF" != xt ; then
1234  #     fi          cat <<EOF
 #     i=$(( $i + 1 ))  
 # done  
 # echo  
1235    
1236  echo "  Searching for CPP_OPTIONS.h (macros and flags for configuring the model):"  WARNING: the "mnc" package has been enabled but tests failed to
1237  CPP_OPTIONS=    compile and/or execute NetCDF applications.  Please check that:
1238  spaths=". $SOURCEDIRS"  
1239  for i in $spaths ; do    1) NetCDF is installed for your compiler and
1240      try="$i/CPP_OPTIONS.h"    2) the LIBS variable (within the 'optfile") specifies the correct
1241      #  echo -n "    trying $try : "         NetCDF library to link against.
1242      if test -f $try -a -r $try ; then    
1243          echo "    found CPP_OPTIONS=\"$try\""  EOF
         CPP_OPTIONS="$try"  
         if test "x$i" != "x." ; then  
             cp -f $CPP_OPTIONS .  
         fi  
         break  
1244      fi      fi
 done  
 if test "x$CPP_OPTIONS" = x ; then  
     echo "Error: can't find \"CPP_OPTIONS.h\" in the path list: $spaths"  
     exit 1  
1245  fi  fi
 if test -e CPP_OPTIONS.h ; then  
     if test ! -e CPP_OPTIONS.h.bak ; then  
         cp -f CPP_OPTIONS.h CPP_OPTIONS.h.bak  
     fi  
     cat CPP_OPTIONS.h \  
         | awk 'BEGIN{p=1;} ($1=="C===" && $2=="GENMAKE"){p=0;} {if (p==1) print $0}' \  
         > CPP_OPTIONS.h.tmp  
 fi  
 cat <<EOF >>CPP_OPTIONS.h.tmp  
 C=== GENMAKE v2 ===  
 C  The following defines have been set by GENMAKE, so please do not  
 C  edit anything below these comments.  In general, you should  
 C  add or remove packages by re-running genmake with different  
 C  "-enable" and/or "-disable" options.  
1246    
1247  C  Packages disabled by genmake:  # Create a list of #define and #undef to enable/disable packages
1248  EOF  PACKAGES_DOT_H=PACKAGES_CONFIG.h
1249  #  The following UGLY HACK sets multiple "#undef"s and it needs to go  #  The following UGLY HACK sets multiple "#undef"s and it needs to go
1250  #  away.  On 2003-08-12, CNH, JMC, and EH3 agreed that the CPP_OPTIONS.h  #  away.  On 2003-08-12, CNH, JMC, and EH3 agreed that the CPP_OPTIONS.h
1251  #  file would eventually be split up so that all package-related #define  #  file would eventually be split up so that all package-related #define
1252  #  statements could be separated and handled only by genmake.  #  statements could be separated and handled only by genmake.
1253  names=`ls -1 "$ROOTDIR/pkg"`  names=`ls -1 "$ROOTDIR/pkg"`
1254  all_pack=  all_pack=
1255    DISABLED_PACKAGES=
1256  for n in $names ; do  for n in $names ; do
1257      if test -d "$ROOTDIR/pkg/$n" -a "x$n" != xCVS ; then      if test -d "$ROOTDIR/pkg/$n" -a "x$n" != xCVS ; then
1258          has_pack="f"          has_pack="f"
# Line 813  for n in $names ; do Line 1263  for n in $names ; do
1263              fi              fi
1264          done          done
1265          if test "x$has_pack" = xf ; then          if test "x$has_pack" = xf ; then
1266              undef=`echo "ALLOW_$n" | awk '{print toupper($0)}'`              undef=`echo "ALLOW_$n" | $AWK '{print toupper($0)}'`
1267              echo "#undef $undef" >> CPP_OPTIONS.h.tmp              DISABLED_PACKAGES="$DISABLED_PACKAGES -U$undef"
   
 #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!  
             case $n in  
                 mom_fluxform)  
                     DEFINES="$DEFINES -DDISABLE_MOM_FLUXFORM"  
                     ;;  
                 mom_vecinv)  
                     DEFINES="$DEFINES -DDISABLE_MOM_VECINV"  
                     ;;  
                 generic_advdiff)  
                     DEFINES="$DEFINES -DDISABLE_GENERIC_ADVDIFF"  
                     ;;  
                 debug)  
                     DEFINES="$DEFINES -DDISABLE_DEBUGMODE"  
                     ;;  
             esac  
 #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!  
   
1268          fi          fi
1269      fi      fi
1270  done  done
1271  cat <<EOF >>CPP_OPTIONS.h.tmp  ENABLED_PACKAGES=
   
 C  Packages enabled by genmake:  
 EOF  
1272  for i in $PACKAGES ; do  for i in $PACKAGES ; do
1273      def=`echo "ALLOW_$i" | awk '{print toupper($0)}'`      def=`echo "ALLOW_$i" | $AWK '{print toupper($0)}'`
1274      echo "#define $def" >> CPP_OPTIONS.h.tmp      ENABLED_PACKAGES="$ENABLED_PACKAGES -D$def"
1275    #eh3 DEFINES="$DEFINES -D$def"
1276    
1277  #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!  #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!
1278      case $i in      case $i in
1279          aim_v23)          aim_v23)
1280              echo "#define   ALLOW_AIM" >> CPP_OPTIONS.h.tmp              ENABLED_PACKAGES="$ENABLED_PACKAGES -DALLOW_AIM"
1281                echo "Warning: ALLOW_AIM is set to enable aim_v23."
1282              ;;              ;;
1283      esac      esac
1284  #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!  #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!
1285    
1286  done  done
 mv -f CPP_OPTIONS.h.tmp CPP_OPTIONS.h  
1287    
1288  echo "  Adding STANDARDDIRS"  echo "  Adding STANDARDDIRS"
1289  BUILDDIR=${BUILDDIR:-.}  BUILDDIR=${BUILDDIR:-.}
1290  STANDARDDIRS=${STANDARDDIRS:-"eesupp model"}  if test "x$STANDARDDIRS" = xUSE_THE_DEFAULT ; then
1291  for d in $STANDARDDIRS ; do      STANDARDDIRS="eesupp model"
1292      adr="$ROOTDIR/$d/src"  fi
1293      if test ! -d $adr ; then  if test "x$STANDARDDIRS" != x ; then
1294          echo "Error:  directory $adr not found -- please check that ROOTDIR=\"$ROOTDIR\""      for d in $STANDARDDIRS ; do
1295          echo "  is correct and that you correctly specified the STANDARDDIRS option"          adr="$ROOTDIR/$d/src"
1296          exit 1          if test ! -d $adr ; then
1297      else              echo "Error:  directory $adr not found -- please check that ROOTDIR=\"$ROOTDIR\""
1298          SOURCEDIRS="$SOURCEDIRS $adr"              echo "  is correct and that you correctly specified the STANDARDDIRS option"
1299      fi              exit 1
1300      adr="$ROOTDIR/$d/inc"          else
1301      if test ! -d $adr ; then              SOURCEDIRS="$SOURCEDIRS $adr"
1302          echo "Error:  directory $adr not found -- please check that ROOTDIR=\"$ROOTDIR\""          fi
1303          echo "  is correct and that you correctly specified the STANDARDDIRS option"          adr="$ROOTDIR/$d/inc"
1304          exit 1          if test ! -d $adr ; then
1305      else              echo "Error:  directory $adr not found -- please check that ROOTDIR=\"$ROOTDIR\""
1306          INCLUDEDIRS="$INCLUDEDIRS $adr"              echo "  is correct and that you correctly specified the STANDARDDIRS option"
1307                exit 1
1308            else
1309                INCLUDEDIRS="$INCLUDEDIRS $adr"
1310            fi
1311        done
1312    fi
1313    
1314    echo "  Searching for *OPTIONS.h files in order to warn about the presence"
1315    echo "    of \"#define \"-type statements that are no longer allowed:"
1316    CPP_OPTIONS=
1317    CPP_EEOPTIONS=
1318    spaths=". $INCLUDEDIRS"
1319    names=`ls -1 "$ROOTDIR/pkg"`
1320    for i in $spaths ; do
1321        try="$i/CPP_OPTIONS.h"
1322        if test -f $try -a -r $try -a "x$CPP_OPTIONS" = x ; then
1323            echo "    found CPP_OPTIONS=\"$try\""
1324            CPP_OPTIONS="$try"
1325            # New safety test: make sure packages are not mentioned in CPP_OPTIONS.h
1326            for n in $names ; do
1327                test_for_package_in_cpp_options $CPP_OPTIONS $n
1328            done
1329        fi
1330        try="$i/CPP_EEOPTIONS.h"
1331        if test -f $try -a -r $try -a "x$CPP_EEOPTIONS" = x ; then
1332            echo "    found CPP_EEOPTIONS=\"$try\""
1333            # New safety test: make sure MPI is not determined by CPP_EEOPTIONS.h
1334    #**** not yet enabled ****
1335    #        test_for_mpi_in_cpp_eeoptions $try
1336    #**** not yet enabled ****
1337            CPP_EEOPTIONS="$try"
1338      fi      fi
1339  done  done
1340    if test "x$CPP_OPTIONS" = x ; then
1341        echo "Error: can't find \"CPP_OPTIONS.h\" in the path list: $spaths"
1342        exit 1
1343    fi
1344    
1345    #  Here, we build the list of files to be "run through" the adjoint
1346    #  compiler.
1347    if test -f ./ad_files ; then
1348        rm -f ./ad_files
1349    fi
1350    echo "  Creating the list of files for the adjoint compiler."
1351    for i in $SOURCEDIRS ; do
1352        list_files=`( cd $i && ls -1 *.list 2>/dev/null )`
1353        for j in $list_files ; do
1354            cat $i/$j >> ad_files
1355        done
1356    done
1357    
1358    
1359  echo  echo
1360  echo "===  Creating the Makefile  ==="  echo "===  Creating the Makefile  ==="
1361  echo "  setting INCLUDES"  echo "  setting INCLUDES"
1362  for i in $INCLUDEDIRS ; do  for i in $INCLUDEDIRS ; do
1363      if test -d $i ; then      if ! test -d $i ; then
1364          INCLUDES="$INCLUDES -I$i"  #       INCLUDES="$INCLUDES -I$i"
1365      else  #   else
1366          echo "Warning: can't find INCLUDEDIRS=\"$i\""          echo "Warning: can't find INCLUDEDIRS=\"$i\""
1367      fi      fi
1368  done  done
# Line 898  echo -n 'SRCFILES = '    > srclist.inc Line 1376  echo -n 'SRCFILES = '    > srclist.inc
1376  echo -n 'CSRCFILES = '   > csrclist.inc  echo -n 'CSRCFILES = '   > csrclist.inc
1377  echo -n 'F90SRCFILES = ' > f90srclist.inc  echo -n 'F90SRCFILES = ' > f90srclist.inc
1378  echo -n 'HEADERFILES = ' > hlist.inc  echo -n 'HEADERFILES = ' > hlist.inc
1379    echo -n 'AD_FLOW_FILES = ' > ad_flow_files.inc
1380  alldirs="$SOURCEDIRS $INCLUDEDIRS ."  alldirs="$SOURCEDIRS $INCLUDEDIRS ."
1381  for d in $alldirs ; do  for d in $alldirs ; do
1382      deplist=      deplist=
1383      sfiles=`( cd $d; echo *.[h,c,F] )`      sfiles=`( cd $d; echo *.[h,c,F] *.flow )`
1384      sfiles=`( echo $sfiles; cd $d; echo *.F90 )`      sfiles=`( echo $sfiles; cd $d; echo *.F90 )`
1385      for sf in $sfiles ; do      for sf in $sfiles ; do
1386          if test ! -r ".links.tmp/$sf" ; then          if test ! -r ".links.tmp/$sf" ; then
1387              if test -f "$d/$sf" ; then              if test -f "$d/$sf" ; then
1388                  extn=`echo $sf | awk -F '.' '{print $NF}'`                  case $d/$sf in
1389                  touch .links.tmp/$sf                    ./$PACKAGES_DOT_H)
1390                  deplist="$deplist $sf"                          ;;
1391                      ./AD_CONFIG.h)
1392                            ;;
1393                      ./FC_NAMEMANGLE.h)
1394                            ;;
1395                      *)
1396                            touch .links.tmp/$sf
1397                            deplist="$deplist $sf"
1398                            ;;
1399                    esac
1400                    extn=`echo $sf | $AWK -F '.' '{print $NF}'`
1401                  case $extn in                  case $extn in
1402                      F)                      F)
1403                          echo    " \\"  >> srclist.inc                          echo    " \\"  >> srclist.inc
# Line 926  for d in $alldirs ; do Line 1415  for d in $alldirs ; do
1415                          echo    " \\"  >> hlist.inc                          echo    " \\"  >> hlist.inc
1416                          echo -n " $sf" >> hlist.inc                          echo -n " $sf" >> hlist.inc
1417                          ;;                          ;;
1418                        flow)
1419                            echo    " \\"  >> ad_flow_files.inc
1420                            echo -n " $sf" >> ad_flow_files.inc
1421                            ;;
1422                  esac                  esac
1423              fi              fi
1424          fi          fi
# Line 942  echo "" >> srclist.inc Line 1435  echo "" >> srclist.inc
1435  echo "" >> csrclist.inc  echo "" >> csrclist.inc
1436  echo "" >> f90srclist.inc  echo "" >> f90srclist.inc
1437  echo "" >> hlist.inc  echo "" >> hlist.inc
1438    echo "" >> ad_flow_files.inc
1439    
1440  if test -e $MAKEFILE ; then  if test -e $MAKEFILE ; then
1441      mv -f $MAKEFILE "$MAKEFILE.bak"      mv -f $MAKEFILE "$MAKEFILE.bak"
# Line 955  echo "# by the command:" >> $MAKEFILE Line 1449  echo "# by the command:" >> $MAKEFILE
1449  echo "#    $0 $@" >> $MAKEFILE  echo "#    $0 $@" >> $MAKEFILE
1450  echo "# executed by:" >> $MAKEFILE  echo "# executed by:" >> $MAKEFILE
1451  echo "#    $USER@${THISHOSTNAME}:${THISCWD}" >> $MAKEFILE  echo "#    $USER@${THISHOSTNAME}:${THISCWD}" >> $MAKEFILE
1452    
1453    EXE_AD=$EXECUTABLE"_ad"
1454    EXE_FTL=$EXECUTABLE"_ftl"
1455    EXE_SVD=$EXECUTABLE"_svd"
1456    
1457  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
1458    #
1459    # OPTFILE="$OPTFILE"
1460  #  #
1461  # BUILDDIR     : Directory where object files are written  # BUILDDIR     : Directory where object files are written
1462  # SOURCEDIRS   : Directories containing the source (.F) files  # SOURCEDIRS   : Directories containing the source (.F) files
# Line 983  EXEDIR      = ${EXEDIR} Line 1484  EXEDIR      = ${EXEDIR}
1484  EXECUTABLE  = \$(EXEDIR)/${EXECUTABLE}  EXECUTABLE  = \$(EXEDIR)/${EXECUTABLE}
1485  TOOLSDIR    = ${TOOLSDIR}  TOOLSDIR    = ${TOOLSDIR}
1486    
1487    #eh3  new defines for the adjoint work
1488    AUTODIFF    = ${ROOTDIR}/pkg/autodiff
1489    EXE_AD      = ${EXE_AD}
1490    EXE_FTL     = ${EXE_FTL}
1491    EXE_SVD     = ${EXE_SVD}
1492    
1493    ENABLED_PACKAGES = ${ENABLED_PACKAGES}
1494    DISABLED_PACKAGES = ${DISABLED_PACKAGES}
1495    
1496    # These files are created by Makefile
1497    SPECIAL_FILES = ${PACKAGES_DOT_H} AD_CONFIG.h FC_NAMEMANGLE.h
1498    
1499  EOF  EOF
1500    
1501  #  Note: figure out some way to add Hyades JAM libraries here  #  Note: figure out some way to add Hyades JAM libraries here
# Line 1028  MAKEFILE=${MAKEFILE} Line 1541  MAKEFILE=${MAKEFILE}
1541    
1542  EOF  EOF
1543    
1544  cat srclist.inc    >> $MAKEFILE  cat srclist.inc       >> $MAKEFILE
1545  cat csrclist.inc   >> $MAKEFILE  cat csrclist.inc      >> $MAKEFILE
1546  cat f90srclist.inc >> $MAKEFILE  cat f90srclist.inc    >> $MAKEFILE
1547  cat hlist.inc      >> $MAKEFILE  cat hlist.inc         >> $MAKEFILE
1548    cat ad_flow_files.inc >> $MAKEFILE
1549    echo               >> $MAKEFILE
1550  echo 'F77FILES =  $(SRCFILES:.F=.f)'                                           >> $MAKEFILE  echo 'F77FILES =  $(SRCFILES:.F=.f)'                                           >> $MAKEFILE
1551  echo 'F90FILES =  $(F90SRCFILES:.F90=.f90)'                                    >> $MAKEFILE  echo 'F90FILES =  $(F90SRCFILES:.F90=.f90)'                                    >> $MAKEFILE
1552  echo 'OBJFILES =  $(SRCFILES:.F=.o) $(CSRCFILES:.c=.o) $(F90SRCFILES:.F90=.o)' >> $MAKEFILE  echo 'OBJFILES =  $(SRCFILES:.F=.o) $(CSRCFILES:.c=.o) $(F90SRCFILES:.F90=.o)' >> $MAKEFILE
1553    
1554  rm -f srclist.inc csrclist.inc hlist.inc flist.tmp clist.tmp f90srclist.inc  rm -f srclist.inc csrclist.inc hlist.inc flist.tmp clist.tmp f90srclist.inc
1555    rm -f ad_flow_files.inc
1556    
1557  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
1558    
# Line 1044  cat >>$MAKEFILE <<EOF Line 1560  cat >>$MAKEFILE <<EOF
1560  .SUFFIXES: .o .f .p .F .c .F90 .f90  .SUFFIXES: .o .f .p .F .c .F90 .f90
1561    
1562  all: \$(EXECUTABLE)  all: \$(EXECUTABLE)
1563  \$(EXECUTABLE): \$(OBJFILES)  \$(EXECUTABLE): \$(SPECIAL_FILES) \$(SRCFILES) \$(CSRCFILES) \$(HEADERFILES) \$(F90SRCFILES) \$(OBJFILES)
1564            @echo Creating \$@ ...
1565          \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) \$(LIBS)          \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) \$(LIBS)
1566  depend:  depend:
1567          @make links          @make links
1568          \$(MAKEDEPEND) -o .f \$(DEFINES) \$(INCLUDES) \$(SRCFILES)          \$(MAKEDEPEND) -o .f \$(DEFINES) \$(INCLUDES) \$(SRCFILES)
1569          ${TOOLSDIR}/f90mkdepend >> \$(MAKEFILE)          \$(TOOLSDIR)/f90mkdepend >> \$(MAKEFILE)
1570    
1571  links: \$(SRCFILES) \$(CSRCFILES) \$(HEADERFILES) \$(F90SRCFILES)  links: \$(SRCFILES) \$(CSRCFILES) \$(HEADERFILES) \$(F90SRCFILES) \$(SPECIAL_FILES)
1572    
1573  small_f: \$(F77FILES) \$(F90FILES)  small_f: \$(F77FILES) \$(F90FILES)
1574    
# Line 1060  output.txt: \$(EXECUTABLE) Line 1577  output.txt: \$(EXECUTABLE)
1577          @\$(EXECUTABLE) > \$@          @\$(EXECUTABLE) > \$@
1578    
1579  clean:  clean:
1580          -rm -rf *.o *.f *.p *.f90 *.mod ${RMFILES} work.{pc,pcl}          -rm -rf *.o *.f *.p *.f90 *.mod ${RMFILES} work.{pc,pcl} *.template
1581  Clean:  Clean:
1582          @make clean          @make clean
1583          @make cleanlinks          @make cleanlinks
1584          -rm -f Makefile.bak          -rm -f \$(SPECIAL_FILES)
1585            -rm -f genmake_state genmake_*optfile genmake_warnings make.log run.log *.bak
1586  CLEAN:  CLEAN:
1587          @make Clean          @make Clean
1588          -find \$(EXEDIR) -name "*.meta" -exec rm {} \;          -find \$(EXEDIR) -name "*.meta" -exec rm {} \;
1589          -find \$(EXEDIR) -name "*.data" -exec rm {} \;          -find \$(EXEDIR) -name "*.data" -exec rm {} \;
1590          -find \$(EXEDIR) -name "fort.*" -exec rm {} \;          -find \$(EXEDIR) -name "fort.*" -exec rm {} \;
1591          -rm -f \$(EXECUTABLE)          -rm -f \$(EXECUTABLE) output.txt
1592    
1593    #eh3 Makefile: makefile
1594  makefile:  makefile:
1595          ${0} $@          $THIS_SCRIPT $@
1596  cleanlinks:  cleanlinks:
1597          -find . -type l -exec rm {} \;          -find . -type l -exec rm {} \;
1598    
1599    # Special targets ($SPECIAL_FILES) which are create by make
1600    ${PACKAGES_DOT_H}:
1601            @echo Creating \$@ ...
1602            @\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bPACKAGES_CONFIG_H "Disabled packages:" \$(DISABLED_PACKAGES) " " "Enabled packages:" \$(ENABLED_PACKAGES) > \$@
1603    AD_CONFIG.h:
1604            @echo Creating \$@ ...
1605            @\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > \$@
1606    FC_NAMEMANGLE.h:
1607            @echo Creating \$@ ...
1608            echo "$FC_NAMEMANGLE" > \$@
1609    
1610  # The normal chain of rules is (  .F - .f - .o  )  # The normal chain of rules is (  .F - .f - .o  )
1611  .F.f:  .F.f:
1612          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@
# Line 1095  cleanlinks: Line 1625  cleanlinks:
1625  .p.f:  .p.f:
1626          \$(KPP) \$(KFLAGS1)\$@ \$(KFLAGS2) \$<          \$(KPP) \$(KFLAGS1)\$@ \$(KFLAGS2) \$<
1627    
1628    #=========================================
1629    #===  Automatic Differentiation Rules  ===
1630    
1631    TAMC           = ${TAMC}
1632    TAF            = ${TAF}
1633    
1634    TAF_EXTRA      = ${TAF_EXTRA}
1635    TAMC_EXTRA     = ${TAMC_EXTRA}
1636    
1637    EOF
1638    
1639    ad_vars="AD_TAMC_FLAGS AD_TAF_FLAGS"
1640    ad_vars="$ad_vars FTL_TAMC_FLAGS FTL_TAF_FLAGS"
1641    ad_vars="$ad_vars SVD_TAMC_FLAGS SVD_TAF_FLAGS"
1642    for i in $ad_vars ; do
1643        name=$i
1644        t1="t2=\$"`echo $i`
1645        eval $t1
1646        printf "%-20s = " $name >> $MAKEFILE
1647        echo $t2 >> $MAKEFILE
1648    done
1649    
1650    echo "  Add the source list for AD code generation"
1651    echo >> $MAKEFILE
1652    echo -n "AD_FILES = " >> $MAKEFILE
1653    AD_FILES=`cat ad_files`
1654    for i in $AD_FILES ; do
1655        echo    " \\" >> $MAKEFILE
1656        echo -n " $i" >> $MAKEFILE
1657    done
1658    echo >> $MAKEFILE
1659    rm -f ad_files
1660    
1661    cat >>$MAKEFILE <<EOF
1662    
1663    # ... AD ...
1664    adall: ad_taf
1665    adtaf: ad_taf_output.f
1666    adtamc: ad_tamc_output.f
1667    
1668    ad_input_code.f: \$(AD_FILES) \$(HEADERFILES)
1669            @\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -DALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ad_config.template
1670            cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
1671            -rm -f ad_config.template
1672            @make \$(F77FILES)
1673            @make \$(AD_FLOW_FILES)
1674            cat \$(AD_FLOW_FILES) \$(AD_FILES) > ad_input_code.f
1675    
1676    ad_taf_output.f: ad_input_code.f
1677            \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.f
1678            cat ad_input_code_ad.f | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.f
1679    
1680    adtafonly:
1681            \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.f
1682            cat ad_input_code_ad.f | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.f
1683    
1684    ad_taf: ad_taf_output.o \$(OBJFILES)
1685            \$(LINK) -o ${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_taf_output.o \$(LIBS)
1686    
1687    ad_tamc_output.f: ad_input_code.f
1688            \$(TAMC) \$(AD_TAMC_FLAGS) \$(TAMC_EXTRA) ad_input_code.f
1689            cat ad_input_code_ad.f | sed -f \$(TOOLSDIR)/adjoint_sed > ad_tamc_output.f
1690    
1691    ad_tamc: ad_tamc_output.o \$(OBJFILES)
1692            \$(LINK) -o ${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_tamc_output.o \$(LIBS)
1693    
1694    
1695    # ... FTL ...
1696    ftlall: ftl_taf
1697    ftltaf: ftl_taf_output.f
1698    ftltamc: ftl_tamc_output.f
1699    
1700    ftl_input_code.f: \$(AD_FILES) \$(HEADERFILES)
1701            @\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ftl_config.template
1702            cmp ftl_config.template AD_CONFIG.h || cat ftl_config.template > AD_CONFIG.h
1703            -rm -f ftl_config.template
1704            @make \$(F77FILES)
1705            @make \$(AD_FLOW_FILES)
1706            cat \$(AD_FLOW_FILES) \$(AD_FILES) > ftl_input_code.f
1707    
1708    ftl_taf_output.f: ftl_input_code.f
1709            \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.f
1710            cat ftl_input_code_ftl.f | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.f
1711    
1712    ftltafonly:
1713            \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.f
1714            cat ftl_input_code_ftl.f | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.f
1715    
1716    ftl_taf: ftl_taf_output.o \$(OBJFILES)
1717            \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_taf_output.o \$(LIBS)
1718    
1719    ftl_tamc_output.f: ftl_input_code.f
1720            \$(TAMC) \$(FTL_TAMC_FLAGS) \$(TAMC_EXTRA) ftl_input_code.f
1721            cat ftl_input_code_ftl.f | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_tamc_output.f
1722    
1723    ftl_tamc: ftl_tamc_output.o \$(OBJFILES)
1724            \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_tamc_output.o \$(LIBS)
1725    
1726    
1727    # ... SVD ...
1728    svdtaf: ad_taf_output.f ftl_taf_output.f
1729    svdall: svd_taf
1730    
1731    svd_taf: ad_taf_output.o ftl_taf_output.o \$(OBJFILES)
1732            \$(LINK) -o mitgcmuv_svd \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_taf_output.o ftl_taf_output.o \$(LIBS)
1733    
1734    
1735    #=========================================
1736    
1737  EOF  EOF
1738    
1739  if test "x$EXEHOOK" != x ; then  if test "x$EXEHOOK" != x ; then
# Line 1131  printf "\n\n# DO NOT DELETE\n" >> $MAKEF Line 1770  printf "\n\n# DO NOT DELETE\n" >> $MAKEF
1770    
1771  printf "\n===  Done  ===\n"  printf "\n===  Done  ===\n"
1772    
1773    # Create special header files
1774    $TOOLSDIR/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bPACKAGES_CONFIG_H "Disabled packages:" $DISABLED_PACKAGES " " "Enabled packages:" $ENABLED_PACKAGES > $PACKAGES_DOT_H".tmp"
1775    if test ! -f $PACKAGES_DOT_H ; then
1776        mv -f $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H
1777    else
1778        cmp $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H > /dev/null 2>&1
1779        RETVAL=$?
1780        if test "x$RETVAL" = x0 ; then
1781            rm -f $PACKAGES_DOT_H".tmp"
1782        else
1783            mv -f $PACKAGES_DOT_H $PACKAGES_DOT_H".bak"
1784            mv -f $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H
1785        fi
1786    fi
1787    if test ! -f AD_CONFIG.h ; then
1788        $TOOLSDIR/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > AD_CONFIG.h
1789    fi
1790    
1791    
1792  #  Write the "state" for future records  #  Write the "state" for future records
1793  if test "x$DUMPSTATE" != xf ; then  if test "x$DUMPSTATE" != xf ; then
1794      echo -n "" > gm_state      echo -n "" > genmake_state
1795      for i in $gm_state ; do      for i in $gm_state ; do
1796          t1="t2=\$$i"          t1="t2=\$$i"
1797          eval $t1          eval $t1
1798          echo "$i='$t2'" >> gm_state          echo "$i='$t2'" >> genmake_state
1799      done      done
1800  fi  fi

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