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revision 1.139 by ce107, Thu Dec 22 01:22:27 2005 UTC revision 1.147 by ce107, Fri May 5 19:00:28 2006 UTC
# Line 13  Line 13 
13  test_for_package_in_cpp_options() {  test_for_package_in_cpp_options() {
14      cpp_options=$1      cpp_options=$1
15      pkg=$2      pkg=$2
16      test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_$pkg" || exit 99      test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_$pkg[ ]"
17      test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_$pkg" || exit 99      test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_$pkg[ ]"
18      test_for_string_in_file $cpp_options "^[ ]*#define.*DISABLE_$pkg" || exit 99      test_for_string_in_file $cpp_options "^[ ]*#define.*DISABLE_$pkg[ ]"
19      test_for_string_in_file $cpp_options "^[ ]*#undef.*DISABLE_$pkg" || exit 99      test_for_string_in_file $cpp_options "^[ ]*#undef.*DISABLE_$pkg[ ]"
20        test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_$pkg$"
21        test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_$pkg$"
22        test_for_string_in_file $cpp_options "^[ ]*#define.*DISABLE_$pkg$"
23        test_for_string_in_file $cpp_options "^[ ]*#undef.*DISABLE_$pkg$"
24  }  }
25    
26  # Search for particular CPP #cmds associated with MPI  # Search for particular CPP #cmds associated with MPI
27  # usage: test_for_mpi_in_cpp_eeoptions CPP_file  # usage: test_for_mpi_in_cpp_eeoptions CPP_file
28  test_for_mpi_in_cpp_eeoptions() {  test_for_mpi_in_cpp_eeoptions() {
29      cpp_options=$1      cpp_options=$1
30      test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_USE_MPI" || exit 99      test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_USE_MPI[ ]"
31      test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_USE_MPI" || exit 99      test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_USE_MPI[ ]"
32      test_for_string_in_file $cpp_options "^[ ]*#define.*ALWAYS_USE_MPI" || exit 99      test_for_string_in_file $cpp_options "^[ ]*#define.*ALWAYS_USE_MPI[ ]"
33      test_for_string_in_file $cpp_options "^[ ]*#undef.*ALWAYS_USE_MPI" || exit 99      test_for_string_in_file $cpp_options "^[ ]*#undef.*ALWAYS_USE_MPI[ ]"
34        test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_USE_MPI$"
35        test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_USE_MPI$"
36        test_for_string_in_file $cpp_options "^[ ]*#define.*ALWAYS_USE_MPI$"
37        test_for_string_in_file $cpp_options "^[ ]*#undef.*ALWAYS_USE_MPI$"
38  }  }
39    
40  # Search for particular string in a file. Return 1 if detected, 0 if not  # Search for particular string in a file. Return 1 if detected, 0 if not
# Line 39  test_for_string_in_file() { Line 47  test_for_string_in_file() {
47      if test "x${RETVAL}" = x0 ; then      if test "x${RETVAL}" = x0 ; then
48          printf "Error: In $file there is an illegal line: "          printf "Error: In $file there is an illegal line: "
49          grep -i "$strng" $file          grep -i "$strng" $file
50          return 1          exit 99
51      fi      fi
52      return 0      return 0
53  }  }
# Line 248  build_cyrus_makedepend()  { Line 256  build_cyrus_makedepend()  {
256      fi      fi
257  }  }
258    
259    
260    build_embed_encode()
261    {
262        printf "  building the embed-encode utility...  "
263        if test ! -e "$ROOTDIR/tools/embed_encode/encode_files" ; then
264            if test ! -d "$ROOTDIR/tools/embed_encode" ; then
265                echo
266                echo "    Error: can't locate \"$ROOTDIR/tools/embed_encode\""
267                echo
268                EMBED_SRC=f
269                return 1
270            fi
271            clist="cc gcc c89 $CC"
272            for ic in $clist ; do
273                comm="$ic -o encode_files encode_files.c"
274                ( cd $ROOTDIR/tools/embed_encode && $comm ) > /dev/null 2>&1
275                RETVAL=$?
276                if test "x$RETVAL" = x0 ; then
277                    echo "OK"
278                    DEFINES="$DEFINES -DHAVE_EMBED_SRC"
279                    return 0
280                fi
281            done
282            echo
283            echo "    Error: unable to build $ROOTDIR/embed_encode/encode_files"
284            echo "      so it has been disabled"
285            echo
286            EMBED_SRC=f
287            return 1
288        fi
289        echo "OK"
290        DEFINES="$DEFINES -DHAVE_EMBED_SRC"
291    }
292    
293    
294  # Guess possible config options for this host  # Guess possible config options for this host
295  find_possible_configs()  {  find_possible_configs()  {
296    
# Line 535  Usage: "$0" [OPTIONS] Line 578  Usage: "$0" [OPTIONS]
578            *only* works if it is supported by the OPTFILE that            *only* works if it is supported by the OPTFILE that
579            is being used.            is being used.
580    
581        -ignoretime | -ignore_time | --ignoretime | --ignore_time
582              Ignore all the "wall clock" routines entirely.  This will
583              not in any way hurt the model results -- it simply means
584              that the code that checks how long the model spends in
585              various routines will give junk values.
586    
587      -ts | --ts      -ts | --ts
588            Produce timing information per timestep            Produce timing information per timestep
589      -papis | --papis      -papis | --papis
590            Produce summary MFlop/s with PAPI per timestep            Produce summary MFlop/s (and IPC) with PAPI per timestep
591        -pcls | --pcls
592              Produce summary MFlop/s etc. with PCL per timestep
593      -foolad | --foolad      -foolad | --foolad
594            Fool the AD code generator            Fool the AD code generator
595      -papi | --papi      -papi | --papi
596            Performance analysis with PAPI            Performance analysis with PAPI
597        -pcl | --pcl
598              Performance analysis with PCL
599      -hpmt | --hpmt      -hpmt | --hpmt
600            Performance analysis with the HPM Toolkit            Performance analysis with the HPM Toolkit
601    
# Line 556  Usage: "$0" [OPTIONS] Line 609  Usage: "$0" [OPTIONS]
609            set to PATH. i.e. Include files from \$PATH/include, link to libraries            set to PATH. i.e. Include files from \$PATH/include, link to libraries
610            from \$PATH/lib and use binaries from \$PATH/bin.            from \$PATH/lib and use binaries from \$PATH/bin.
611    
612        -es | --es | -embed-source | --embed-source
613              Embed a tarball containing the full source code
614              (including the Makefile, etc.) used to build the
615              executable [off by default]
616    
617      -bash NAME      -bash NAME
618            Explicitly specify the Bourne or BASH shell to use            Explicitly specify the Bourne or BASH shell to use
619    
# Line 962  MPI= Line 1020  MPI=
1020  MPIPATH=  MPIPATH=
1021  TS=  TS=
1022  PAPIS=  PAPIS=
1023    PCLS=
1024  FOOLAD=  FOOLAD=
1025  PAPI=  PAPI=
1026    PCL=
1027  HPMT=  HPMT=
1028  GSL=  GSL=
1029  HAVE_TEST_L=  HAVE_TEST_L=
# Line 990  BASH= Line 1050  BASH=
1050  PWD=`pwd`  PWD=`pwd`
1051  test "x$MAKE" = x  &&  MAKE=make  test "x$MAKE" = x  &&  MAKE=make
1052  test "x$AWK" = x   &&  AWK=awk  test "x$AWK" = x   &&  AWK=awk
1053    EMBED_SRC=
1054  THISHOST=`hostname`  THISHOST=`hostname`
1055  THISCWD=`pwd`  THISCWD=`pwd`
1056  THISDATE=`date`  THISDATE=`date`
# Line 1023  TAMC_EXTRA= Line 1084  TAMC_EXTRA=
1084    
1085  #  The following state can be set directly by command-line switches  #  The following state can be set directly by command-line switches
1086  gm_s1="OPTFILE PDEPEND PDEFAULT MAKEFILE PLATFORM ROOTDIR MODS DISABLE ENABLE"  gm_s1="OPTFILE PDEPEND PDEFAULT MAKEFILE PLATFORM ROOTDIR MODS DISABLE ENABLE"
1087  gm_s2="FC CPP IEEE TS PAPIS PAPI HPMT GSL MPI JAM DUMPSTATE STANDARDDIRS"  gm_s2="FC CPP IEEE TS PAPIS PCLS PAPI PCL HPMT GSL MPI JAM DUMPSTATE STANDARDDIRS"
1088    
1089  #  The following state is not directly set by command-line switches  #  The following state is not directly set by command-line switches
1090  gm_s3="LN S64 KPP LINK PACKAGES MAKEDEPEND PDEPEND PDEFAULT INCLUDES FFLAGS FOPTIM "  gm_s3="LN S64 KPP LINK PACKAGES MAKEDEPEND PDEPEND PDEFAULT INCLUDES FFLAGS FOPTIM "
# Line 1207  for ac_option in "$@" ; do Line 1268  for ac_option in "$@" ; do
1268              TS=true ;;              TS=true ;;
1269          -papis | --papis)          -papis | --papis)
1270              PAPIS=true ;;              PAPIS=true ;;
1271            -pcls | --pcls)
1272                PCLS=true ;;
1273          -foolad | --foolad)          -foolad | --foolad)
1274              FOOLAD=true ;;              FOOLAD=true ;;
1275          -papi | --papi)          -papi | --papi)
1276              PAPI=true ;;              PAPI=true ;;
1277            -pcl | --pcl)
1278                PCL=true ;;
1279          -hpmt | --hpmt)          -hpmt | --hpmt)
1280              HPMT=true ;;              HPMT=true ;;
1281    
# Line 1244  for ac_option in "$@" ; do Line 1309  for ac_option in "$@" ; do
1309          -ignoretime | -ignore_time | --ignoretime | --ignore_time)          -ignoretime | -ignore_time | --ignoretime | --ignore_time)
1310              IGNORE_TIME="-DIGNORE_TIME" ;;              IGNORE_TIME="-DIGNORE_TIME" ;;
1311    
1312            -es | --es | -embed-source | --embed-source)
1313                EMBED_SRC=t ;;
1314    
1315          -*)          -*)
1316              echo "Error: unrecognized option: "$ac_option              echo "Error: unrecognized option: "$ac_option
1317              usage              usage
# Line 1476  if test ! "x$PAPIS" = x ; then Line 1544  if test ! "x$PAPIS" = x ; then
1544        INCLUDES="$INCLUDES $PAPIINC"        INCLUDES="$INCLUDES $PAPIINC"
1545        LIBS="$LIBS $PAPILIB"        LIBS="$LIBS $PAPILIB"
1546  fi  fi
1547    if test ! "x$PCLS" = x ; then
1548          echo "  Turning on PCL counter summary per timestep"
1549          echo "  Please make sure PCLINC, PCLLIB are defined"
1550          if test ! "x$FOOLAD" = x ; then
1551                DEFINES="$DEFINES -DUSE_PCL_FLOPS_SFP"
1552          else
1553                DEFINES="$DEFINES -DUSE_PCL_FLOPS"
1554          fi
1555          INCLUDES="$INCLUDES $PCLINC"
1556          LIBS="$LIBS $PCLLIB"
1557    fi
1558  if test ! "x$PAPI" = x ; then  if test ! "x$PAPI" = x ; then
1559        if test ! "x$PAPIS" = x ; then        if test ! "x$PAPIS" = x ; then
1560            echo "  PAPI performance analysis and flop summary per timestep cannot co-exist!"            echo "  PAPI performance analysis and flop summary per timestep cannot co-exist!"
# Line 1488  if test ! "x$PAPI" = x ; then Line 1567  if test ! "x$PAPI" = x ; then
1567            LIBS="$LIBS $PAPILIB"            LIBS="$LIBS $PAPILIB"
1568        fi        fi
1569  fi  fi
1570    if test ! "x$PCL" = x ; then
1571          if test ! "x$PCLS" = x ; then
1572              echo "  PCL performance analysis and flop summary per timestep cannot co-exist!"
1573              echo "  Sticking with PCL flop summary per timestep!"
1574          else
1575              echo "  Turning on performance analysis with PCL"
1576              echo "  Please make sure PCLINC, PCLLIB are defined"
1577              DEFINES="$DEFINES -DUSE_PCL"
1578              INCLUDES="$INCLUDES $PCLINC"
1579              LIBS="$LIBS $PCLLIB"
1580          fi
1581    fi
1582  if test ! "x$HPMT" = x ; then  if test ! "x$HPMT" = x ; then
1583        if test ! "x$PAPI" = x ; then        if test ! "x$PAPI" = x ; then
1584            echo "  PAPI and the HPM Toolkit cannot co-exist!"            echo "  PAPI and the HPM Toolkit cannot co-exist!"
1585            echo "  Sticking with PAPI!"            echo "  Sticking with PAPI!"
1586          else if test ! "x$PCL" = x ; then
1587              echo "  PCL and the HPM Toolkit cannot co-exist!"
1588              echo "  Sticking with PCL!"
1589        else        else
1590            echo "  Turning on performance analysis with the HPM Toolkit"            echo "  Turning on performance analysis with the HPM Toolkit"
1591            echo "  Please make sure HPMTINC, HPMTLIB are defined"            echo "  Please make sure HPMTINC, HPMTLIB are defined"
# Line 1576  if test "x$HAVE_CLOC" != x ; then Line 1670  if test "x$HAVE_CLOC" != x ; then
1670      echo "yes"      echo "yes"
1671  else  else
1672      echo "no"      echo "no"
1673        if test "x$EMBED_SRC" = xt ; then
1674            echo "    WARNING: you requested file embedding but it has"
1675            echo "      been disabled since C code cannot be called"
1676            EMBED_SRC=
1677        fi
1678  fi  fi
1679  rm -f genmake_t*  rm -f genmake_t*
1680    
# Line 1615  else Line 1714  else
1714  fi  fi
1715  DEFINES="$DEFINES $IGNORE_TIME"  DEFINES="$DEFINES $IGNORE_TIME"
1716    
1717    if test "x$EMBED_SRC" = xt ; then
1718        build_embed_encode
1719    fi
1720    if test "x$EMBED_SRC" = xt ; then
1721        ENABLE="$ENABLE embed_files"
1722    fi
1723    
1724    
1725  printf "\n===  Setting defaults  ===\n"  printf "\n===  Setting defaults  ===\n"
1726  printf "  Adding MODS directories:  "  printf "  Adding MODS directories:  "
1727  for d in $MODS ; do  for d in $MODS ; do
# Line 2066  for i in $INCLUDEDIRS ; do Line 2173  for i in $INCLUDEDIRS ; do
2173      fi      fi
2174  done  done
2175    
 echo "  Creating the pseudo-MPI include directory"  
2176  if test ! "x$DIVA" = x ; then  if test ! "x$DIVA" = x ; then
2177        echo "  Creating the pseudo-MPI include directory"
2178      INCLUDES="-I./mpi_headers $INCLUDES"      INCLUDES="-I./mpi_headers $INCLUDES"
2179      rm -rf ./mpi_headers      rm -rf ./mpi_headers
2180      mkdir -p ./mpi_headers      mkdir -p ./mpi_headers
# Line 2094  fi Line 2201  fi
2201  echo "  Determining the list of source and include files"  echo "  Determining the list of source and include files"
2202  rm -rf .links.tmp  rm -rf .links.tmp
2203  mkdir .links.tmp  mkdir .links.tmp
2204    touch .links.tmp/foo
2205    if test ! -r ".links.tmp/foo" ; then
2206        echo
2207        echo "ERROR : something is wrong with your directory permissions or"
2208        echo "   your user file-creation mask (\"umask\") since creating a"
2209        echo "   sub-dir, touch-ing a file within it, and then reading it is"
2210        echo "   not working.  Please try setting your umask to something"
2211        echo "   sane such as:"
2212        echo
2213        echo "      umask 0002"
2214        echo
2215        echo "   and please verify that you have the proper permissions for"
2216        echo "   creating sub-directories and then reading files created"
2217        echo "   within them."
2218        echo
2219        exit 1
2220    fi
2221    rm -f .links.tmp/foo
2222  echo "# This section creates symbolic links" > srclinks.tmp  echo "# This section creates symbolic links" > srclinks.tmp
2223  echo "" >> srclinks.tmp  echo "" >> srclinks.tmp
2224  printf 'SRCFILES = '    > srclist.inc  printf 'SRCFILES = '    > srclist.inc
# Line 2112  for d in $alldirs ; do Line 2237  for d in $alldirs ; do
2237                  ignore_f=f                  ignore_f=f
2238                  case $d/$sf in                  case $d/$sf in
2239                    ./$PACKAGES_DOT_H)                    ./$PACKAGES_DOT_H)
2240                            ignore_f=t
2241                          ;;                          ;;
2242                    ./AD_CONFIG.h)                    ./AD_CONFIG.h)
2243                            ignore_f=t
2244                          ;;                          ;;
2245                    ./FC_NAMEMANGLE.h)                    ./FC_NAMEMANGLE.h)
2246                            ignore_f=t
2247                          ;;                          ;;
2248                    ./BUILD_INFO.h)                    ./BUILD_INFO.h)
2249                            ignore_f=t
2250                            ;;
2251                      ./EMBEDDED_FILES.h)
2252                            ignore_f=t
2253                          ;;                          ;;
2254                    *)                    *)
2255                          #  For the local directory *ONLY*,                          #  For the local directory *ONLY*,
# Line 2230  DISABLED_PACKAGES = ${DISABLED_PACKAGES} Line 2362  DISABLED_PACKAGES = ${DISABLED_PACKAGES}
2362    
2363  # These files are created by Makefile  # These files are created by Makefile
2364  SPECIAL_FILES = ${PACKAGES_DOT_H} AD_CONFIG.h FC_NAMEMANGLE.h BUILD_INFO.h  SPECIAL_FILES = ${PACKAGES_DOT_H} AD_CONFIG.h FC_NAMEMANGLE.h BUILD_INFO.h
   
2365  EOF  EOF
2366    
2367  #  Note: figure out some way to add Hyades JAM libraries here  if test "x$EMBED_SRC" = xt ; then
2368        echo "EMBEDDED_FILES = EMBEDDED_FILES.h" >>$MAKEFILE
2369    else
2370        echo "EMBEDDED_FILES = " >>$MAKEFILE
2371    fi
2372    
2373    #  Note: figure out some way to add Hyades JAM libraries here
2374  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
2375  # Unix ln (link)  # Unix ln (link)
2376  LN = ${LN}  LN = ${LN}
# Line 2296  rm -f ad_flow_files.inc Line 2432  rm -f ad_flow_files.inc
2432  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
2433    
2434  all: \$(EXECUTABLE)  all: \$(EXECUTABLE)
2435  \$(EXECUTABLE): \$(SPECIAL_FILES) \$(SRCFILES) \$(CSRCFILES) \$(HEADERFILES) \$(F90SRCFILES) \$(OBJFILES)  \$(EXECUTABLE): \$(SPECIAL_FILES) \$(SRCFILES) \$(CSRCFILES) \$(HEADERFILES) \$(F90SRCFILES) \$(OBJFILES) \$(EMBEDDED_FILES)
2436          @echo Creating \$@ ...          @echo Creating \$@ ...
2437          \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) \$(LIBS)          \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) \$(LIBS)
2438  depend:  depend:
# Line 2330  CLEAN: Line 2466  CLEAN:
2466          -find \$(EXEDIR) -name "*.meta" -exec rm {} \;          -find \$(EXEDIR) -name "*.meta" -exec rm {} \;
2467          -find \$(EXEDIR) -name "*.data" -exec rm {} \;          -find \$(EXEDIR) -name "*.data" -exec rm {} \;
2468          -find \$(EXEDIR) -name "fort.*" -exec rm {} \;          -find \$(EXEDIR) -name "fort.*" -exec rm {} \;
2469          -rm -f \$(EXECUTABLE) output.txt STD*          -rm -f \$(EXECUTABLE) *.txt STD* *diagnostics.log datetime
2470            -rm -rf mnc_test_*
2471    
2472  #eh3 Makefile: makefile  #eh3 Makefile: makefile
2473  makefile:  makefile:
# Line 2358  test ! "x$THISUSER" = x && echo "      -echo Line 2495  test ! "x$THISUSER" = x && echo "      -echo
2495  test ! "x$THISDATE" = x && echo "       -echo \"#define THISDATE '$THISDATE'\" >> \$@" >> $MAKEFILE  test ! "x$THISDATE" = x && echo "       -echo \"#define THISDATE '$THISDATE'\" >> \$@" >> $MAKEFILE
2496  test ! "x$THISHOST" = x && echo "       -echo \"#define THISHOST '$THISHOST'\" >> \$@" >> $MAKEFILE  test ! "x$THISHOST" = x && echo "       -echo \"#define THISHOST '$THISHOST'\" >> \$@" >> $MAKEFILE
2497    
2498    if test "x$EMBED_SRC" = xt ; then
2499        cat >>$MAKEFILE <<EOF
2500    
2501    decode_files.o : EMBEDDED_FILES.h
2502    
2503    ##  \$(F77FILES)
2504    all_fF.tar.gz : \$(SPECIAL_FILES) \$(SRCFILES) \$(CSRCFILES) \$(HEADERFILES) \$(F90SRCFILES) \$(F77FILES) Makefile
2505            @echo Creating \$@ ...
2506            -tar -hcf all_fF.tar \$(SPECIAL_FILES) \$(SRCFILES) \$(CSRCFILES) \$(HEADERFILES) \$(F90SRCFILES) \$(F77FILES) Makefile
2507            -rm -f all_fF.tar.gz
2508            -gzip all_fF.tar
2509    
2510    EMBEDDED_FILES.h : all_fF.tar.gz
2511            @echo Creating \$@ ...
2512            -\${ROOTDIR}/tools/embed_encode/encode_files EMBEDDED_FILES.h all_fF.tar.gz
2513    
2514    EOF
2515    fi
2516    
2517  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
2518    
2519  # The normal chain of rules is (  .F - .$FS - .o  )  # The normal chain of rules is (  .F - .$FS - .o  )

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