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revision 1.27 by edhill, Tue Nov 4 18:40:58 2003 UTC revision 1.145 by jmc, Wed Mar 29 19:28:02 2006 UTC
# Line 1  Line 1 
1  #!/bin/bash  #! /usr/bin/env bash
2  #  #
3  # $Header$  # $Header$
4  #  #
# Line 13  Line 13 
13  test_for_package_in_cpp_options() {  test_for_package_in_cpp_options() {
14      cpp_options=$1      cpp_options=$1
15      pkg=$2      pkg=$2
16      grep -i "#define.*ALLOW_$pkg" $cpp_options > /dev/null 2>&1      test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_$pkg" || exit 99
17      RETVAL=$?      test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_$pkg" || exit 99
18      if test "x${RETVAL}" = x0 ; then      test_for_string_in_file $cpp_options "^[ ]*#define.*DISABLE_$pkg" || exit 99
19          echo "Error: In $cpp_options there is an illegal line: #define ALLOW_$pkg"      test_for_string_in_file $cpp_options "^[ ]*#undef.*DISABLE_$pkg" || exit 99
20          exit 99  }
21      fi  
22      grep -i "#undef.*ALLOW_$pkg" $cpp_options > /dev/null 2>&1  # Search for particular CPP #cmds associated with MPI
23      RETVAL=$?  # usage: test_for_mpi_in_cpp_eeoptions CPP_file
24      if test "x${RETVAL}" = x0 ; then  test_for_mpi_in_cpp_eeoptions() {
25          echo "Error: In $cpp_options there is an illegal line: #undef ALLOW_$pkg"      cpp_options=$1
26          exit 99      test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_USE_MPI" || exit 99
27      fi      test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_USE_MPI" || exit 99
28      grep -i "#define.*DISABLE_$pkg" $cpp_options > /dev/null 2>&1      test_for_string_in_file $cpp_options "^[ ]*#define.*ALWAYS_USE_MPI" || exit 99
29        test_for_string_in_file $cpp_options "^[ ]*#undef.*ALWAYS_USE_MPI" || exit 99
30    }
31    
32    # Search for particular string in a file. Return 1 if detected, 0 if not
33    # usage: test_for_string_in_file file string
34    test_for_string_in_file() {
35        file=$1
36        strng=$2
37        grep -i "$strng" $file > /dev/null 2>&1
38      RETVAL=$?      RETVAL=$?
39      if test "x${RETVAL}" = x0 ; then      if test "x${RETVAL}" = x0 ; then
40          echo "Error: In $cpp_options there is an illegal line: #define DISABLE_$pkg"          printf "Error: In $file there is an illegal line: "
41          exit 99          grep -i "$strng" $file
42            return 1
43      fi      fi
44      grep -i "#undef.*DISABLE_$pkg" $cpp_options > /dev/null 2>&1      return 0
     RETVAL=$?  
     if test "x${RETVAL}" = x0 ; then  
         echo "Error: In $cpp_options there is an illegal line: #undef DISABLE_$pkg"  
         exit 99  
    fi  
45  }  }
46    
47  # Read the $ROOTDIR/pkg/pkg_groups file and expand any references to  # Read the $ROOTDIR/pkg/pkg_groups file and expand any references to
# Line 62  expand_pkg_groups() { Line 67  expand_pkg_groups() {
67          done          done
68          PACKAGES=$new_packages          PACKAGES=$new_packages
69          rm -f ./p[1,2].tmp          rm -f ./p[1,2].tmp
70            return $matched
71      else      else
72          echo "Warning: can't read package groups definition file: $PKG_GROUPS"          echo "Warning: can't read package groups definition file: $PKG_GROUPS"
73      fi      fi
74  }  }
75    
76    #  Check for broken environments (eg. cygwin, MacOSX w/HFS+) that
77    #  cannot distinguish [*.F/*.F90] from [*.f/*.f90] files.
78    check_for_broken_Ff()  {
79        #  Do we have defaults for $FS and/or $FS90 ?
80        tfs=f
81        tfs9=f90
82        if test "x$FS" != x ; then
83            tfs="$FS"
84        fi
85        if test "x$FS90" != x ; then
86            tfs9="$FS90"
87        fi
88    
89        #  First check the ability to create a *.F/.f pair.
90        cat <<EOF >> genmake_hello.F
91          program hello
92          write(*,*) 'hi'
93          stop
94          end
95    EOF
96        cp genmake_hello.F "genmake_hello."$tfs > /dev/null 2>&1
97        RETVAL=$?
98        if test "x$RETVAL" != x0 ; then
99            if test "x$FS" = x ; then
100                FS='for'
101                FS90='fr9'
102                check_for_broken_Ff
103            else
104                cat <<EOF 2>&1
105    ERROR: Your file system cannot distinguish between *.F and *.f files
106      (fails the "cp" test) and this program cannot find a suitable
107      replacement extension.  Please try a different build environment or
108      contact the <MITgcm-support@mitgcm.org> list for help.
109    
110    EOF
111                exit -1
112            fi
113            return
114        fi
115        rm -f genmake_hello.*
116    
117        #  Check the ability of ${MAKE} and ${LN} to use the current set
118        #  of extensions.
119        cat <<EOF >> genmake_hello.F
120          program hello
121          write(*,*) 'hi'
122          stop
123          end
124    EOF
125        test -f $MAKEFILE  &&  mv -f $MAKEFILE $MAKEFILE".tst"
126        cat <<EOF >> $MAKEFILE
127    .SUFFIXES:
128    .SUFFIXES: .$tfs .F
129    .F.$tfs:
130            $LN \$< \$@
131    EOF
132        $MAKE "genmake_hello."$tfs > /dev/null 2>&1
133        RETVAL=$?
134        if test "x$RETVAL" != x0 -o ! -f "genmake_hello."$tfs ; then
135            if test "x$FS" = x ; then
136                FS='for'
137                FS90='fr9'
138                check_for_broken_Ff
139            else
140                cat <<EOF 2>&1
141    ERROR: Your file system cannot distinguish between *.F and *.f files
142      (fails the "make/ln" test) and this program cannot find a suitable
143      replacement extension.  Please try a different build environment or
144      contact the <MITgcm-support@mitgcm.org> list for help.
145    
146    EOF
147                exit -1
148                return
149            fi
150        fi
151        rm -f genmake_hello.* $MAKEFILE
152        test -f $MAKEFILE".tst"  &&  mv -f $MAKEFILE".tst" $MAKEFILE
153    
154        #  If we make it here, use the extensions
155        FS=$tfs
156        FS90=$tfs9
157        return
158    }
159    
160    
161    look_for_makedepend()  {
162    
163        #  The "original" makedepend is part of the Imake system that is
164        #  most often distributed with XFree86 or with an XFree86 source
165        #  package.  As a result, many machines (eg. generic Linux) do not
166        #  have a system-default "makedepend" available.  For those
167        #  systems, we have two fall-back options:
168        #
169        #    1) a makedepend implementation shipped with the cyrus-imapd
170        #       package:  ftp://ftp.andrew.cmu.edu/pub/cyrus-mail/
171        #
172        #    2) a known-buggy xmakedpend shell script
173        #
174        #  So the choices are, in order:
175        #
176        #    1) use the user-specified program
177        #    2) use a system-wide default
178        #    3) locally build and use the cyrus implementation
179        #    4) fall back to the buggy local xmakedpend script
180        #
181        if test "x${MAKEDEPEND}" = x ; then
182            which makedepend > /dev/null 2>&1
183            RV0=$?
184            test -f $MAKEFILE  &&  mv -f $MAKEFILE $MAKEFILE".tst"
185            #  echo 'MAKEFILE="'$MAKEFILE'"'
186            cat <<EOF >> $MAKEFILE
187    #   THIS IS A TEST MAKEFILE GENERATED BY "genmake2"
188    #
189    #   Some "makedepend" implementations will die if they cannot
190    #   find a Makefile -- so this file is here to gives them an
191    #   empty one to find and parse.
192    EOF
193            cat <<EOF >> genmake_tc.f
194          program test
195          write(*,*) 'test'
196          stop
197          end
198    EOF
199            makedepend genmake_tc.f > /dev/null 2>&1
200            RV1=$?
201            test -f $MAKEFILE  &&  rm -f $MAKEFILE
202            test -f $MAKEFILE".tst"  &&  mv -f $MAKEFILE".tst" $MAKEFILE
203            if test "x${RV0}${RV1}" = x00 ; then
204                MAKEDEPEND=makedepend
205            else
206                echo "    a system-default makedepend was not found."
207                
208                #  Try to build the cyrus implementation
209                build_cyrus_makedepend
210                RETVAL=$?
211                if test "x$RETVAL" != x0 ; then
212                    MAKEDEPEND='$(TOOLSDIR)/xmakedepend'
213                fi
214                rm -f ./genmake_cy_md
215            fi
216        else
217            #  echo "MAKEDEPEND=${MAKEDEPEND}"
218            echo "${MAKEDEPEND}" | grep -i cyrus > /dev/null 2>&1
219            RETVAL=$?
220            if test x"$RETVAL" = x0 ; then
221                build_cyrus_makedepend
222            fi
223        fi
224    }
225    
226    
227    build_cyrus_makedepend()  {
228        rm -f ./genmake_cy_md
229        (
230            cd $ROOTDIR/tools/cyrus-imapd-makedepend  \
231                &&  ./configure > /dev/null 2>&1  \
232                &&  make > /dev/null 2>&1
233            if test -x ./makedepend.exe ; then
234                $LN ./makedepend.exe ./makedepend
235            fi
236            ./makedepend ifparser.c > /dev/null 2>&1  \
237                &&  echo "true"
238        ) > ./genmake_cy_md
239        grep true ./genmake_cy_md > /dev/null 2>&1
240        RETVAL=$?
241        rm -f ./genmake_cy_md
242        if test "x$RETVAL" = x0 ; then
243            MAKEDEPEND='$(TOOLSDIR)/cyrus-imapd-makedepend/makedepend'
244            return 0
245        else
246            echo "WARNING: unable to build cyrus-imapd-makedepend"
247            return 1
248        fi
249    }
250    
251    
252    build_embed_encode()
253    {
254        printf "  building the embed-encode utility...  "
255        if test ! -e "$ROOTDIR/tools/embed_encode/encode_files" ; then
256            if test ! -d "$ROOTDIR/tools/embed_encode" ; then
257                echo
258                echo "    Error: can't locate \"$ROOTDIR/tools/embed_encode\""
259                echo
260                EMBED_SRC=f
261                return 1
262            fi
263            clist="cc gcc c89 $CC"
264            for ic in $clist ; do
265                comm="$ic -o encode_files encode_files.c"
266                ( cd $ROOTDIR/tools/embed_encode && $comm ) > /dev/null 2>&1
267                RETVAL=$?
268                if test "x$RETVAL" = x0 ; then
269                    echo "OK"
270                    DEFINES="$DEFINES -DHAVE_EMBED_SRC"
271                    return 0
272                fi
273            done
274            echo
275            echo "    Error: unable to build $ROOTDIR/embed_encode/encode_files"
276            echo "      so it has been disabled"
277            echo
278            EMBED_SRC=f
279            return 1
280        fi
281        echo "OK"
282        DEFINES="$DEFINES -DHAVE_EMBED_SRC"
283    }
284    
285    
286  # Guess possible config options for this host  # Guess possible config options for this host
287  find_possible_configs()  {  find_possible_configs()  {
288    
289      tmp1=`uname`"_"`uname -m`      tmp1=`uname`"_"`uname -m`
290      tmp2=`echo $tmp1 | sed -e 'y/ABCDEFGHIJKLMNOPQRSTUVWXYZ/abcdefghijklmnopqrstuvwxyz/'`      tmp2=`echo $tmp1 | sed -e 'y/ABCDEFGHIJKLMNOPQRSTUVWXYZ/abcdefghijklmnopqrstuvwxyz/'`
291      tmp3=`echo $tmp2 | sed -e 's/power macintosh/ppc/'`      tmp3=`echo $tmp2 | sed -e 's/power macintosh/ppc/'`
292      PLATFORM=`echo $tmp3 | sed -e 's/i[3-6]86/ia32/' | sed -e 's/athlon/ia32/'`      tmp1=`echo $tmp3 | sed -e 's|x86_64|amd64|'`
293        tmp2=`echo $tmp1 | sed -e 's/i[3-6]86/ia32/' | sed -e 's/athlon/ia32/'`
294        tmp3=`echo $tmp2 | sed -e 's/cray sv1/craysv1/'`
295        PLATFORM=$tmp3
296        echo $PLATFORM | grep cygwin > /dev/null 2>&1  &&  PLATFORM=cygwin_ia32
297      OFLIST=`(cd $ROOTDIR/tools/build_options; ls | grep "^$PLATFORM")`      OFLIST=`(cd $ROOTDIR/tools/build_options; ls | grep "^$PLATFORM")`
298      echo "  The platform appears to be:  $PLATFORM"      echo "  The platform appears to be:  $PLATFORM"
 #     if test "x$OFLIST" = x ; then  
 #       echo "  No pre-defined options files were found matching this platform"  
 #       echo "  but examples for other platforms can be found in:"  
 #       echo "    $ROOTDIR/tools/build_options"  
 #     else  
 #       echo "  Options files (located in $ROOTDIR/tools/build_options) that"  
 #       echo "  may work with this machine are:"  
 #       for i in $OFLIST ; do  
 #           echo "    $i"  
 #       done  
 #     fi  
299            
300      echo "test" > test      echo "test" > test
301      ln -s ./test link      ln -s ./test link
# Line 104  find_possible_configs()  { Line 313  find_possible_configs()  {
313          CPP="cpp -traditional -P"          CPP="cpp -traditional -P"
314      fi      fi
315    
316      # look for possible fortran compilers      look_for_makedepend
317      tmp="$MITGCM_FC $FC efc g77 f77 pgf77 pgf95 ifc f90 f95 mpif77 mpf77 mpxlf95"  
318        #================================================================
319        #  look for possible C compilers
320        tmp="$MITGCM_CC $CC gcc c89 cc c99 mpicc"
321        p_CC=
322        for c in $tmp ; do
323            rm -f ./genmake_hello.c  ./genmake_hello
324            cat >> genmake_hello.c << EOF
325    #include <stdio.h>
326    int main(int argc, char **argv) {
327      printf("Hello!\n");
328      return 0;
329    }
330    EOF
331            $c -o genmake_hello genmake_hello.c > /dev/null 2>&1
332            RETVAL=$?
333            if test "x${RETVAL}" = x0 ; then
334                p_CC="$p_CC $c"
335            fi
336        done
337        rm -f ./genmake_hello.c ./genmake_hello
338        if test "x${p_CC}" = x ; then
339            cat 1>&2 <<EOF
340    
341    Error: No C compilers were found in your path.  Please specify one using:
342    
343        1) an "optfile" on (eg. "-optfile=path/to/OPTFILE"),
344        2) the CC or MITGCM_CC environment variables.
345    
346    EOF
347            exit 1
348        else
349            echo "  The possible C compilers found in your path are:"
350            echo "   "$p_CC
351            if test "x$CC" = x ; then
352                CC=`echo $p_CC | $AWK '{print $1}'`
353                echo "  Setting C compiler to: "$CC
354            fi
355        fi
356    
357        #================================================================
358        #  look for possible FORTRAN compilers
359        tmp="$MITGCM_FC $FC efc g77 f77 pgf77 pgf95 ifc f90 f95 mpif77 mpf77 mpxlf95 gfortran"
360      p_FC=      p_FC=
361      for c in $tmp ; do      for c in $tmp ; do
362          rm -f ./hello.f ./hello          rm -f ./hello.f ./hello
# Line 130  Error: No Fortran compilers were found i Line 381  Error: No Fortran compilers were found i
381    
382      1) an "optfile" on (eg. "-optfile=path/to/OPTFILE"),      1) an "optfile" on (eg. "-optfile=path/to/OPTFILE"),
383      2) a command-line option (eg. "-fc NAME"), or      2) a command-line option (eg. "-fc NAME"), or
384      3) the MITGCM_FC environment variable.      3) the FC or MITGCM_FC environment variables.
385    
386  EOF  EOF
387          exit 1          exit 1
388      else      else
389          echo "  The possible FORTRAN compilers found in your path are:"          echo "  The possible FORTRAN compilers found in your path are:"
390          echo "   "$p_FC          echo "   "$p_FC
         if test "x$FC" = x ; then  
             FC=`echo $p_FC | $AWK '{print $1}'`  
         fi  
391      fi      fi
392    
393      for i in $p_FC ; do      #  Use the first of the compilers found in the current PATH
394          p_OF=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$i      #  that has a correctly-named optfile
395          if test -r $p_OF ; then      if test "x$OPTFILE" = x  -a  "x$FC" = x ; then
396              OPTFILE=$p_OF          for i in $p_FC ; do
397              echo "  The options file:  $p_OF"              OPTFILE=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$i
398              echo "    appears to match so we'll use it."              if test -r $OPTFILE ; then
399              break                  echo "  Setting OPTFILE to: "$OPTFILE
400          fi                  break
401      done              fi
402            done
403        fi
404    
405        if test "x$OPTFILE" = x ; then
406            OPTFILE=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$FC
407            if test ! -r $OPTFILE ; then
408                 echo "  I looked for the file "$OPTFILE" but did not find it"
409            fi
410        fi
411    #    echo "  The options file:  $p_OF"
412    #    echo "    appears to match so we'll use it."
413    #   for i in $p_FC ; do
414    #p_OF=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$i
415    #if test -r $p_OF ; then
416    #    OPTFILE=$p_OF
417    #    echo "  The options file:  $p_OF"
418    #    echo "    appears to match so we'll use it."
419    #    break
420    #fi
421    #   done
422      if test "x$OPTFILE" = x ; then      if test "x$OPTFILE" = x ; then
423          cat 1>&2 <<EOF          cat 1>&2 <<EOF
424    
# Line 206  get_pdepend_list()  { Line 474  get_pdepend_list()  {
474      cat $1 | sed -e 's/#.*$//g' \      cat $1 | sed -e 's/#.*$//g' \
475          | $AWK 'BEGIN{nn=0;} (NF>0){ for(i=2;i<=NF;i++){nn++; print "PNAME["nn"]="$1"\nDNAME["nn"]="$i} }' \          | $AWK 'BEGIN{nn=0;} (NF>0){ for(i=2;i<=NF;i++){nn++; print "PNAME["nn"]="$1"\nDNAME["nn"]="$i} }' \
476          > ./.pd_tmp          > ./.pd_tmp
477      source ./.pd_tmp      . ./.pd_tmp
478      rm -f ./.pd_tmp      rm -f ./.pd_tmp
479    
480      echo -n "PNAME = "${}      printf "PNAME = "${}
481  }  }
482    
483    
484  #  Explain usage  #  Explain usage
485  usage()  {  usage()  {
486      echo  cat <<EOF
487      echo "Usage: "$0" [OPTIONS]"  
488      echo "  where [OPTIONS] can be:"  Usage: "$0" [OPTIONS]
489      echo    where [OPTIONS] can be:
490      echo "    -help | --help | -h | --h"  
491      echo "    -nooptfile | --nooptfile"      -help | --help | -h | --h
492      echo "      -optfile NAME | --optfile NAME | -of NAME | --of NAME"            Print this help message and exit.
493      echo "      -optfile=NAME | --optfile=NAME | -of=NAME | --of=NAME"  
494      echo "    -pdepend NAME | --pdepend NAME"      -adoptfile NAME | --adoptfile NAME | -adof NAME | --adof NAME
495      echo "      -pdepend=NAME | --pdepend=NAME"        -adoptfile=NAME | --adoptfile=NAME | -adof=NAME | --adof=NAME
496      echo "    -pdefault NAME | --pdefault NAME"            Use "NAME" as the adoptfile.  By default, the file at
497      echo "      -pdefault=NAME | --pdefault=NAME"            "tools/adjoint_options/adjoint_default" will be used.
498      echo "    -make NAME | -m NAME"  
499      echo "      --make=NAME | -m=NAME"      -nooptfile | --nooptfile
500      echo "    -makefile NAME | -mf NAME"        -optfile NAME | --optfile NAME | -of NAME | --of NAME
501      echo "      --makefile=NAME | -mf=NAME"        -optfile=NAME | --optfile=NAME | -of=NAME | --of=NAME
502      echo "    -platform NAME | --platform NAME | -pl NAME | --pl NAME"            Use "NAME" as the optfile.  By default, an attempt will be
503      echo "      -platform=NAME | --platform=NAME | -pl=NAME | --pl=NAME"            made to find an appropriate "standard" optfile in the
504      echo "    -rootdir NAME | --rootdir NAME | -rd NAME | --rd NAME"            tools/build_options/ directory.
505      echo "      -rootdir=NAME | --rootdir=NAME | -rd=NAME | --rd=NAME"  
506      echo "    -mods NAME | --mods NAME | -mo NAME | --mo NAME"      -pdepend NAME | --pdepend NAME
507      echo "      -mods=NAME | --mods=NAME | -mo=NAME | --mo=NAME"        -pdepend=NAME | --pdepend=NAME
508      echo "    -disable NAME | --disable NAME"            Get package dependency information from "NAME".
509      echo "      -disable=NAME | --disable=NAME"  
510      echo "    -enable NAME | --enable NAME"      -pdefault NAME | --pdefault NAME
511      echo "      -enable=NAME | --enable=NAME"        -pdefault=NAME | --pdefault=NAME
512      echo "    -standarddirs NAME | --standarddirs NAME"            Get the default package list from "NAME".
513      echo "      -standarddirs=NAME | --standarddirs=NAME"  
514      echo "    -noopt NAME | --noopt NAME"      -make NAME | -m NAME
515      echo "      -noopt=NAME | --noopt=NAME"        --make=NAME | -m=NAME
516  #    echo "    -cpp NAME | --cpp NAME"            Use "NAME" for the MAKE program. The default is "make" but
517  #    echo "      -cpp=NAME | --cpp=NAME"            many platforms, "gmake" is the preferred choice.
518      echo "    -fortran NAME | --fortran NAME | -fc NAME | --fc NAME"  
519      echo "      -fc=NAME | --fc=NAME"      -makefile NAME | -mf NAME
520      echo "    -[no]ieee | --[no]ieee"        --makefile=NAME | -mf=NAME
521      echo "    -[no]mpi | --[no]mpi"            Call the makefile "NAME".  The default is "Makefile".
522      echo "    -[no]jam | --[no]jam"  
523      echo      -makedepend NAME | -md NAME
524      echo "  and NAME is a string such as:"        --makedepend=NAME | -md=NAME
525      echo            Use "NAME" for the MAKEDEPEND program.
526      echo "    --enable pkg1   --enable 'pkg1 pkg2'   --enable 'pkg1 pkg2 pkg3'"  
527      echo "    -mods=dir1   -mods='dir1'   -mods='dir1 dir2 dir3'"      -rootdir NAME | --rootdir NAME | -rd NAME | --rd NAME
528      echo "    -foptim='-Mvect=cachesize:512000,transform -xtypemap=real:64,double:64,integer:32'"        -rootdir=NAME | --rootdir=NAME | -rd=NAME | --rd=NAME
529      echo            Specify the location of the MITgcm ROOTDIR as "NAME".
530      echo "  which, depending upon your shell, may need to be single-quoted"            By default, genamke will try to find the location by
531      echo "  if it contains spaces, dashes, or other special characters."            looking in parent directories (up to the 5th parent).
532    
533        -mods NAME | --mods NAME | -mo NAME | --mo NAME
534          -mods=NAME | --mods=NAME | -mo=NAME | --mo=NAME
535              Here, "NAME" specifies a list of directories that are
536              used for additional source code.  Files found in the
537              "mods list" are given preference over files of the same
538              name found elsewhere.
539    
540        -disable NAME | --disable NAME
541          -disable=NAME | --disable=NAME
542              Here "NAME" specifies a list of packages that we don't
543              want to use.  If this violates package dependencies,
544              genamke will exit with an error message.
545    
546        -enable NAME | --enable NAME
547          -enable=NAME | --enable=NAME
548              Here "NAME" specifies a list of packages that we wish
549              to specifically enable.  If this violates package
550              dependencies, genamke will exit with an error message.
551    
552        -standarddirs NAME | --standarddirs NAME
553          -standarddirs=NAME | --standarddirs=NAME
554              Here, "NAME" specifies a list of directories to be
555              used as the "standard" code.
556    
557        -fortran NAME | --fortran NAME | -fc NAME | --fc NAME
558          -fc=NAME | --fc=NAME
559              Use "NAME" as the fortran compiler.  By default, genmake
560              will search for a working compiler by trying a list of
561              "usual suspects" such as g77, f77, etc.
562    
563        -cc NAME | --cc NAME | -cc=NAME | --cc=NAME
564              Use "NAME" as the C compiler.  By default, genmake
565              will search for a working compiler by trying a list of
566              "usual suspects" such as gcc, c89, cc, etc.
567    
568        -[no]ieee | --[no]ieee
569              Do or don't use IEEE numerics.  Note that this option
570              *only* works if it is supported by the OPTFILE that
571              is being used.
572    
573        -ignoretime | -ignore_time | --ignoretime | --ignore_time
574              Ignore all the "wall clock" routines entirely.  This will
575              not in any way hurt the model results -- it simply means
576              that the code that checks how long the model spends in
577              various routines will give junk values.
578    
579        -ts | --ts
580              Produce timing information per timestep
581        -papis | --papis
582              Produce summary MFlop/s with PAPI per timestep
583        -foolad | --foolad
584              Fool the AD code generator
585        -papi | --papi
586              Performance analysis with PAPI
587        -hpmt | --hpmt
588              Performance analysis with the HPM Toolkit
589    
590        -gsl | --gsl
591              Use GSL to control floating point rounding and precision
592    
593        -mpi | --mpi
594              Include MPI header files and link to MPI libraries
595        -mpi=PATH | --mpi=PATH
596              Include MPI header files and link to MPI libraries using MPI_ROOT
597              set to PATH. i.e. Include files from \$PATH/include, link to libraries
598              from \$PATH/lib and use binaries from \$PATH/bin.
599    
600        -es | --es | -embed-source | --embed-source
601              Embed a tarball containing the full source code
602              (including the Makefile, etc.) used to build the
603              executable [off by default]
604    
605        -bash NAME
606              Explicitly specify the Bourne or BASH shell to use
607    
608      While it is most often a single word, the "NAME" variables specified
609      above can in many cases be a space-delimited string such as:
610    
611        --enable pkg1   --enable 'pkg1 pkg2'   --enable 'pkg1 pkg2 pkg3'
612        -mods=dir1   -mods='dir1'   -mods='dir1 dir2 dir3'
613        -foptim='-Mvect=cachesize:512000,transform -xtypemap=real:64,double:64,integer:32'
614    
615      which, depending upon your shell, may need to be single-quoted.
616    
617      For more detailed genmake documentation, please see:
618    
619        http://mitgcm.org/devel_HOWTO/
620    
621    EOF
622    
623      exit 1      exit 1
624  }  }
625    
626  #eh3 # This is the generic configuration.  #  Build a CPP macro to automate calling C routines from FORTRAN
627  #eh3 set LN         = ( 'ln -s' )  get_fortran_c_namemangling()  {
628  #eh3 set CPP        = ( '/lib/cpp -P' )  
629  #eh3 set S64        = ( '$(TOOLSDIR)/set64bitConst.sh' )      #echo "FC_NAMEMANGLE = \"$FC_NAMEMANGLE\""
630  #eh3 set KPP        = (  )      if test ! "x$FC_NAMEMANGLE" = x ; then
631  #eh3 set FC         = ( 'f77' )          return 0
632  #eh3 set LINK       = $FC      fi
633  #eh3 set MAKEDEPEND = ( 'makedepend' )  
634  #eh3 set INCLUDES   = ( -I. )      default_nm="#define FC_NAMEMANGLE(X) X ## _"
635  #eh3 set FFLAGS     = (  )      
636  #eh3 set FOPTIM     = (  )      cat > genmake_test.c <<EOF
637  #eh3 set CFLAGS     = (  )  void tcall( char * string ) { tsub( string ); }
638  #eh3 set KFLAGS1    = (  )  EOF
639  #eh3 set KFLAGS2    = (  )      $MAKE genmake_test.o >> genmake_warnings 2>&1
640  #eh3 set LIBS       = (  )      RETVAL=$?
641  #eh3 set KPPFILES   = (  )      if test "x$RETVAL" != x0 ; then
642  #eh3 if (! $?NOOPTFILES ) set NOOPTFILES = (  )          FC_NAMEMANGLE=$default_nm
643  #eh3 if (! $?NOOPTFLAGS ) set NOOPTFLAGS = (  )          cat <<EOF>> genmake_errors
644    
645    WARNING: C test compile fails
646    WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
647    WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here
648    EOF
649            return 1
650        fi
651        c_tcall=`nm genmake_test.o 2>/dev/null | grep 'T ' | grep tcall | cut -d ' ' -f 3`
652        RETVAL=$?
653        if test "x$RETVAL" != x0 ; then
654            FC_NAMEMANGLE=$default_nm
655            cat <<EOF>> genmake_warnings
656    
657    WARNING: The "nm" command failed.
658    WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
659    WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here
660    EOF
661            return 1
662        fi
663        cat > genmake_tcomp.$FS <<EOF
664          subroutine tcall( string )
665          character*(*) string
666          call tsub( string )
667          end
668    EOF
669        $FC $FFLAGS -c genmake_tcomp.$FS >> genmake_warnings 2>&1
670        RETVAL=$?
671        if test "x$RETVAL" != x0 ; then
672            FC_NAMEMANGLE=$default_nm
673            cat <<EOF>> genmake_warnings
674    
675    WARNING: FORTRAN test compile fails -- please see "genmake_errors"
676    WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
677    WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here.
678    EOF
679            return 1
680        fi
681        f_tcall=`nm genmake_tcomp.o 2>/dev/null | grep 'T ' | grep tcall | cut -d ' ' -f 3`
682        RETVAL=$?
683        if test "x$RETVAL" != x0 ; then
684            FC_NAMEMANGLE=$default_nm
685            cat <<EOF>> genmake_warnings
686    
687    WARNING: The "nm" command failed.
688    WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
689    WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here.
690    EOF
691            return 1
692        fi
693    
694        c_a=`echo $c_tcall | sed -e 's|tcall|Y Y|' | cut -d ' ' -f 1 | sed -e 's|Y||'`
695        f_a=`echo $f_tcall | sed -e 's|tcall|Y Y|' | cut -d ' ' -f 1 | sed -e 's|Y||'`
696        c_b=`echo $c_tcall | sed -e 's|tcall|Y Y|' | cut -d ' ' -f 2 | sed -e 's|Y||'`
697        f_b=`echo $f_tcall | sed -e 's|tcall|Y Y|' | cut -d ' ' -f 2 | sed -e 's|Y||'`
698    
699        nmangle="X"
700        if test "x$c_a" != "x$f_a" ; then
701            comm="echo x$f_a | sed -e 's|x$c_a||'"
702            a=`eval $comm`
703            nmangle="$a ## $nmangle"
704        fi
705        if test "x$c_b" != "x$f_b" ; then
706            comm="echo x$f_b | sed -e 's|x$c_b||'"
707            b=`eval $comm`
708            nmangle="$nmangle ## $b"
709        fi
710    
711        FC_NAMEMANGLE="#define FC_NAMEMANGLE(X)  $nmangle"
712    
713        #  cleanup the testing files
714        rm -f genmake_tcomp.* genmake_test.*
715    }
716    
717    
718    check_HAVE_CLOC()  {
719        get_fortran_c_namemangling
720        cat <<EOF > genmake_tc_1.c
721    $FC_NAMEMANGLE
722    #include <stdio.h>
723    #include <stdlib.h>
724    #include <unistd.h>
725    #include <assert.h>
726    #include <sys/time.h>
727    void FC_NAMEMANGLE(cloc) ( double *curtim )
728    {
729     struct timeval tv1;
730     gettimeofday(&tv1 , (void *)NULL );
731     *curtim =  (double)((tv1.tv_usec)+(tv1.tv_sec)*1.E6);
732     *curtim = *curtim/1.E6;
733    }
734    EOF
735        make genmake_tc_1.o >> genmake_warnings 2>&1
736        RET_C=$?
737        cat <<EOF > genmake_tc_2.$FS
738          program hello
739          REAL*8 wtime
740          external cloc
741          call cloc(wtime)
742          print *," HELLO WORLD", wtime
743          end
744    EOF
745        $FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o >> genmake_warnings 2>&1
746        RET_F=$?
747        test -x ./genmake_tc  &&  ./genmake_tc >> genmake_warnings 2>&1
748        RETVAL=$?
749        if test "x$RETVAL" = x0 ; then
750            HAVE_CLOC=t
751            DEFINES="$DEFINES -DHAVE_CLOC"
752        fi
753        rm -f genmake_tc*
754    }
755    
756    
757    check_HAVE_SIGREG()  {
758        get_fortran_c_namemangling
759        cat <<EOF > genmake_tc_1.c
760    $FC_NAMEMANGLE
761    #include <stdlib.h>
762    #include <stdio.h>
763    #include <signal.h>
764    #include <errno.h>
765    #include <ucontext.h>
766    
767    int * ip;
768    
769    static void killhandler(
770        unsigned int sn, siginfo_t  si, struct ucontext *sc )
771    {
772        *ip = *ip + 1;
773        return;
774    }
775    
776    void FC_NAMEMANGLE(sigreg) (int * aip)
777    {
778        struct sigaction s;
779        ip = aip;
780        s.sa_flags = SA_SIGINFO;
781        s.sa_sigaction = (void *)killhandler;
782        if(sigaction (SIGTERM,&s,(struct sigaction *)NULL)) {
783            printf("Sigaction returned error = %d\n", errno);
784            exit(0);
785        }
786        return;
787    }
788    EOF
789        make genmake_tc_1.o >> genmake_warnings 2>&1
790        RET_C=$?
791        cat <<EOF > genmake_tc_2.$FS
792          program hello
793          integer anint
794          common /iv/ anint
795          external sigreg
796          call sigreg(anint)
797          end
798    EOF
799        echo >> genmake_warnings
800        echo "running: check_HAVE_SIGREG()" >> genmake_warnings
801        cat genmake_tc_2.$FS >> genmake_warnings
802        COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"
803        echo $COMM >> genmake_warnings
804        $COMM >> genmake_warnings 2>&1
805        RETVAL=$?
806        if test "x$RETVAL" = x0 ; then
807            HAVE_SIGREG=t
808            DEFINES="$DEFINES -DHAVE_SIGREG"
809        fi
810        rm -f genmake_tc*
811    }
812    
813    
814    check_HAVE_SETRLSTK()  {
815        get_fortran_c_namemangling
816        cat <<EOF > genmake_tc_1.c
817    $FC_NAMEMANGLE
818    #include <sys/time.h>
819    #include <sys/resource.h>
820    #include <unistd.h>
821    void FC_NAMEMANGLE(setrlstk) ()
822    {
823        struct rlimit rls;
824        rls.rlim_cur = RLIM_INFINITY;
825        rls.rlim_max = RLIM_INFINITY;
826        setrlimit(RLIMIT_STACK, &rls);
827        return;
828    }
829    EOF
830        make genmake_tc_1.o >> genmake_warnings 2>&1
831        RET_C=$?
832        cat <<EOF > genmake_tc_2.$FS
833          program hello
834          external setrlstk
835          call setrlstk()
836          end
837    EOF
838        echo >> genmake_warnings
839        echo "running: check_HAVE_SETRLSTK()" >> genmake_warnings
840        cat genmake_tc_2.$FS >> genmake_warnings
841        COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"
842        echo $COMM >> genmake_warnings
843        $COMM >> genmake_warnings 2>&1
844        RETVAL=$?
845        if test "x$RETVAL" = x0 ; then
846            HAVE_SETRLSTK=t
847            DEFINES="$DEFINES -DHAVE_SETRLSTK"
848        fi
849        rm -f genmake_tc*
850    }
851    
852    
853    check_HAVE_STAT()  {
854        get_fortran_c_namemangling
855        cat <<EOF > genmake_tc_1.c
856    $FC_NAMEMANGLE
857    #include <stdio.h>
858    #include <stdlib.h>
859    #include <unistd.h>
860    #include <sys/stat.h>
861    #include <sys/types.h>
862    void FC_NAMEMANGLE(tfsize) ( int *nbyte )
863    {
864        char name[512];
865        struct stat astat;
866    
867        name[0] = 'a'; name[1] = '\0';
868        if (! stat(name, &astat))
869            *nbyte = (int)(astat.st_size);
870        else
871            *nbyte = -1;
872    }
873    EOF
874        make genmake_tc_1.o >> genmake_tc.log 2>&1
875        RET_C=$?
876        cat <<EOF > genmake_tc_2.$FS
877          program hello
878          integer nbyte
879          call tfsize(nbyte)
880          print *," HELLO WORLD", nbyte
881          end
882    EOF
883        echo >> genmake_warnings
884        echo "running: check_HAVE_STAT()" >> genmake_warnings
885        cat genmake_tc_2.$FS >> genmake_warnings
886        COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"
887        echo $COMM >> genmake_warnings
888        $COMM >> genmake_tc.log 2>&1
889        RETVAL=$?
890        if test "x$RETVAL" = x0 ; then
891            HAVE_STAT=t
892            DEFINES="$DEFINES -DHAVE_STAT"
893        fi
894        rm -f genmake_tc*
895    }
896    
897    
898    check_netcdf_libs()  {
899        if test ! "x$SKIP_NETCDF_CHECK" = x ; then
900            return
901        fi
902        echo >> genmake_warnings
903        echo "running: check_netcdf_libs()" >> genmake_warnings
904        cat <<EOF > genmake_tnc.F
905          program fgennc
906    #include "netcdf.inc"
907    EOF
908        if test ! "x$MPI" = x ; then
909            echo '#include "mpif.h"' >> genmake_tnc.F
910        fi
911        cat <<EOF >> genmake_tnc.F
912          integer iret, ncid, xid
913          iret = nf_create('genmake_tnc.nc', NF_CLOBBER, ncid)
914          IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret)
915          iret = nf_def_dim(ncid, 'X', 11, xid)
916          IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret)
917          iret = nf_close(ncid)
918          IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret)
919          end
920    EOF
921        echo "===  genmake_tnc.F  ===" > genmake_tnc.log
922        cat genmake_tnc.F >> genmake_tnc.log
923        echo "===  genmake_tnc.F  ===" >> genmake_tnc.log
924        RET_CPP=f
925        COMM="$CPP $DEFINES $INCLUDES genmake_tnc.F"
926        echo "$COMM" >> genmake_tnc.log
927        $COMM > genmake_tnc.$FS 2>/dev/null  &&  RET_CPP=t
928        if test "x$RET_CPP" = xf ; then
929            echo "  WARNING: CPP failed to pre-process the netcdf test." \
930                >> genmake_tnc.log
931            echo "    Please check that \$INCLUDES is properly set." \
932                >> genmake_tnc.log
933        fi
934        echo "$FC $FFLAGS $FOPTIM -c genmake_tnc.$FS  \ " >> genmake_tnc.log
935        echo "  &&  $LINK -o genmake_tnc.o $LIBS" >> genmake_tnc.log
936        $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS >> genmake_tnc.log 2>&1  \
937            &&  $LINK -o genmake_tnc genmake_tnc.o $LIBS >> genmake_tnc.log 2>&1
938        RET_COMPILE=$?
939        cat genmake_tnc.log >> genmake_warnings
940    
941        #EH3  Remove test program execution for machines that either disallow
942        #EH3  execution or cannot support it (eg. cross-compilers)
943        #EH3
944        #EH3 test -x ./genmake_tnc  &&  ./genmake_tnc >> genmake_tnc.log 2>&1
945        #EH3 RETVAL=$?
946        #EH3 if test "x$RET_COMPILE" = x0 -a "x$RETVAL" = x0 ; then
947    
948        if test "x$RET_COMPILE" = x0 ; then
949            HAVE_NETCDF=t
950        else
951            # try again with "-lnetcdf" added to the libs
952            echo "try again with added '-lnetcdf'" > genmake_tnc.log
953            echo "$CPP $DEFINES $INCLUDES genmake_tnc.F > genmake_tnc.$FS \ " >> genmake_tnc.log
954            echo " &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS \ " >> genmake_tnc.log
955            echo " &&  $LINK -o genmake_tnc genmake_tnc.o $LIBS -lnetcdf" >> genmake_tnc.log
956            $CPP $DEFINES $INCLUDES genmake_tnc.F > genmake_tnc.$FS 2>/dev/null  \
957                &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS >> genmake_tnc.log 2>&1  \
958                &&  $LINK -o genmake_tnc genmake_tnc.o $LIBS -lnetcdf >> genmake_tnc.log 2>&1
959            RET_COMPILE=$?
960            cat genmake_tnc.log >> genmake_warnings
961            if test "x$RET_COMPILE" = x0 ; then
962                LIBS="$LIBS -lnetcdf"
963                HAVE_NETCDF=t
964            fi
965        fi
966        rm -f genmake_tnc*
967    }
968    
969    
970    
971    ###############################################################################
972    #   Sequential part of script starts here
973    ###############################################################################
974    
975  #  Set defaults here  #  Set defaults here
976  COMMANDL="$0 $@"  COMMANDL="$0 $@"
# Line 290  PLATFORM= Line 979  PLATFORM=
979  LN=  LN=
980  S64=  S64=
981  KPP=  KPP=
982  FC=  #FC=
983    #CC=gcc
984    #CPP=
985  LINK=  LINK=
986  DEFINES="-DWORDLENGTH=4"  DEFINES=
987  PACKAGES=  PACKAGES=
988  ENABLE=  ENABLE=
989  DISABLE=  DISABLE=
990  MAKEFILE=  # MAKEFILE=
991  MAKEDEPEND=  # MAKEDEPEND=
992  PDEPEND=  PDEPEND=
993  DUMPSTATE=t  DUMPSTATE=t
994  PDEFAULT=  PDEFAULT=
995  OPTFILE=  OPTFILE=
996  INCLUDES="-I."  INCLUDES="-I. $INCLUDES"
997  FFLAGS=  FFLAGS=
998  FOPTIM=  FOPTIM=
999  CFLAGS=  CFLAGS=
1000  KFLAGS1=  KFLAGS1=
1001  KFLAGS2=  KFLAGS2=
1002    #LDADD=
1003  LIBS=  LIBS=
1004  KPPFILES=  KPPFILES=
1005  NOOPTFILES=  NOOPTFILES=
1006  NOOPTFLAGS=  NOOPTFLAGS=
1007    MPI=
1008    MPIPATH=
1009    TS=
1010    PAPIS=
1011    FOOLAD=
1012    PAPI=
1013    HPMT=
1014    GSL=
1015    HAVE_TEST_L=
1016    
1017    # DEFINES checked by test compilation or command-line
1018    HAVE_SYSTEM=
1019    HAVE_FDATE=
1020    FC_NAMEMANGLE=
1021    HAVE_CLOC=
1022    HAVE_SETRLSTK=
1023    HAVE_STAT=
1024    HAVE_NETCDF=
1025    HAVE_ETIME=
1026    IGNORE_TIME=
1027    
1028  MODS=  MODS=
1029  TOOLSDIR=  TOOLSDIR=
1030  SOURCEDIRS=  SOURCEDIRS=
1031  INCLUDEDIRS=  INCLUDEDIRS=
1032  STANDARDDIRS=  STANDARDDIRS="USE_THE_DEFAULT"
1033    
1034    G2ARGS=
1035    BASH=
1036  PWD=`pwd`  PWD=`pwd`
1037  MAKE=make  test "x$MAKE" = x  &&  MAKE=make
1038  AWK=awk  test "x$AWK" = x   &&  AWK=awk
1039  THISHOSTNAME=`hostname`  EMBED_SRC=
1040    THISHOST=`hostname`
1041  THISCWD=`pwd`  THISCWD=`pwd`
1042  THISDATE=`date`  THISDATE=`date`
1043    THISUSER=`echo $USER`
1044    THISVER=
1045  MACHINE=`uname -a`  MACHINE=`uname -a`
1046  EXECUTABLE=  EXECUTABLE=
1047  EXEHOOK=  EXEHOOK=
# Line 334  IEEE= Line 1051  IEEE=
1051  if test "x$MITGCM_IEEE" != x ; then  if test "x$MITGCM_IEEE" != x ; then
1052      IEEE=$MITGCM_IEEE      IEEE=$MITGCM_IEEE
1053  fi  fi
1054    FS=
1055    FS90=
1056    
1057  AUTODIFF_PKG_USED=f  AUTODIFF_PKG_USED=f
1058  AD_OPTFILE=  AD_OPTFILE=
# Line 350  TAMC_EXTRA= Line 1069  TAMC_EXTRA=
1069    
1070    
1071  #  The following state can be set directly by command-line switches  #  The following state can be set directly by command-line switches
1072  gm_s1="OPTFILE PDEPEND PDEFAULT MAKEFILE PLATFORM ROOTDIR MODS DISABLE ENABLE NOOPT"  gm_s1="OPTFILE PDEPEND PDEFAULT MAKEFILE PLATFORM ROOTDIR MODS DISABLE ENABLE"
1073  gm_s2="FC IEEE MPI JAM DUMPSTATE STANDARDDIRS"  gm_s2="FC CPP IEEE TS PAPIS PAPI HPMT GSL MPI JAM DUMPSTATE STANDARDDIRS"
1074    
1075  #  The following state is not directly set by command-line switches  #  The following state is not directly set by command-line switches
1076  gm_s3="LN S64 KPP LINK PACKAGES MAKEDEPEND PDEPEND PDEFAULT INCLUDES FFLAGS FOPTIM "  gm_s3="LN S64 KPP LINK PACKAGES MAKEDEPEND PDEPEND PDEFAULT INCLUDES FFLAGS FOPTIM "
1077  gm_s4="CFLAGS KFLAGS1 KFLAGS2 LIBS KPPFILES NOOPTFILES NOOPTFLAGS"  gm_s4="CFLAGS KFLAGS1 KFLAGS2 LIBS KPPFILES NOOPTFILES NOOPTFLAGS"
1078  gm_s5="TOOLSDIR SOURCEDIRS INCLUDEDIRS PWD MAKE THISHOSTNAME THISDATE MACHINE"  gm_s5="TOOLSDIR SOURCEDIRS INCLUDEDIRS PWD MAKE THISHOST THISUSER THISDATE THISVER MACHINE"
1079  gm_s6="EXECUTABLE EXEHOOK EXEDIR PACKAGES_CONF"  gm_s6="EXECUTABLE EXEHOOK EXEDIR PACKAGES_CONF"
1080    gm_s7="HAVE_SYSTEM HAVE_FDATE FC_NAMEMANGLE HAVE_ETIME"
1081    
1082  #  The following are all related to adjoint/tangent-linear stuff  #  The following are all related to adjoint/tangent-linear stuff
1083  gm_s7="AUTODIFF_PKG_USED AD_OPTFILE TAMC TAF AD_TAMC_FLAGS AD_TAF_FLAGS"  gm_s10="AUTODIFF_PKG_USED AD_OPTFILE TAMC TAF AD_TAMC_FLAGS AD_TAF_FLAGS"
1084  gm_s8="FTL_TAMC_FLAGS FTL_TAF_FLAGS SVD_TAMC_FLAGS SVD_TAF_FLAGS"  gm_s11="FTL_TAMC_FLAGS FTL_TAF_FLAGS SVD_TAMC_FLAGS SVD_TAF_FLAGS"
1085  gm_s9="TAF_EXTRA TAMC_EXTRA"  gm_s12="TAF_EXTRA TAMC_EXTRA"
1086    
1087  gm_state="COMMANDL $gm_s1 $gm_s2 $gm_s3 $gm_s4 $gm_s5 $gm_s6 $gm_s7 $gm_s8 $gm_s9"  gm_state="COMMANDL $gm_s1 $gm_s2 $gm_s3 $gm_s4 $gm_s5 $gm_s6 $gm_s7"
1088    gm_state="$gm_state $gm_s10 $gm_s11 $gm_s12"
1089    
1090    cat <<EOF
1091    
1092    GENMAKE :
1093    
1094    A program for GENerating MAKEfiles for the MITgcm project.  For a
1095    quick list of options, use "genmake -h" or for more detail see:
1096    
1097      http://mitgcm.org/devel_HOWTO/
1098    
1099    EOF
1100    
 echo  
1101  echo "===  Processing options files and arguments  ==="  echo "===  Processing options files and arguments  ==="
1102  gm_local="genmake_local"  gm_local="genmake_local"
1103  for i in . $MODS ; do  for i in . $MODS ; do
1104      if test -r $i/$gm_local ; then      if test -r $i/$gm_local ; then
1105          source $i/$gm_local          . $i/$gm_local
1106          break          break
1107      fi      fi
1108  done  done
1109  echo -n "  getting local config information:  "  printf "  getting local config information:  "
1110  if test -e $gm_local ; then  if test -f $gm_local ; then
1111      echo "using $gm_local"      echo "using $gm_local"
1112      source $gm_local      . $gm_local
1113      # echo "DISABLE=$DISABLE"      # echo "DISABLE=$DISABLE"
1114      # echo "ENABLE=$ENABLE"      # echo "ENABLE=$ENABLE"
1115  else  else
1116      echo "none found"      echo "none found"
1117  fi  fi
1118    
1119  #  echo "$0::$1:$2:$3:$4:$5:$6:$7:"  #echo "$0::$1:$2:$3:$4:$5:$6:$7:"
1120  #OPTIONS=  #OPTIONS=
1121  #n=0  #n=0
1122  #for i ; do  #for i ; do
# Line 398  fi Line 1128  fi
1128  #done  #done
1129  #parse_options  #parse_options
1130  ac_prev=  ac_prev=
1131  for ac_option ; do  for ac_option in "$@" ; do
1132    
1133        G2ARGS="$G2ARGS \"$ac_option\""
1134    
1135      # If the previous option needs an argument, assign it.      # If the previous option needs an argument, assign it.
1136      if test -n "$ac_prev"; then      if test -n "$ac_prev"; then
# Line 421  for ac_option ; do Line 1153  for ac_option ; do
1153          -optfile=* | --optfile=* | -of=* | --of=*)          -optfile=* | --optfile=* | -of=* | --of=*)
1154              OPTFILE=$ac_optarg ;;              OPTFILE=$ac_optarg ;;
1155                    
1156          -adoptfile | --adoptfile | -ad | --ad)          -adoptfile | --adoptfile | -adof | --adof)
1157              ac_prev=AD_OPTFILE ;;              ac_prev=AD_OPTFILE ;;
1158          -adoptfile=* | --adoptfile=* | -adof=* | --adof=*)          -adoptfile=* | --adoptfile=* | -adof=* | --adof=*)
1159              AD_OPTFILE=$ac_optarg ;;              AD_OPTFILE=$ac_optarg ;;
# Line 441  for ac_option ; do Line 1173  for ac_option ; do
1173          -make=* | --make=* | -m=* | --m=*)          -make=* | --make=* | -m=* | --m=*)
1174              MAKE=$ac_optarg ;;              MAKE=$ac_optarg ;;
1175                    
1176            -bash | --bash)
1177                ac_prev=BASH ;;
1178            -bash=* | --bash=*)
1179                BASH=$ac_optarg ;;
1180            
1181            -makedepend | --makedepend | -md | --md)
1182                ac_prev=MAKEDEPEND ;;
1183            -makedepend=* | --makedepend=* | -md=* | --md=*)
1184                MAKEDEPEND=$ac_optarg ;;
1185            
1186          -makefile | --makefile | -ma | --ma)          -makefile | --makefile | -ma | --ma)
1187              ac_prev=MAKEFILE ;;              ac_prev=MAKEFILE ;;
1188          -makefile=* | --makefile=* | -ma=* | --ma=*)          -makefile=* | --makefile=* | -ma=* | --ma=*)
1189              MAKEFILE=$ac_optarg ;;              MAKEFILE=$ac_optarg ;;
1190                    
1191          -platform | --platform | -pl | --pl)          -platform | --platform | -pl | --pl | -platform=* | --platform=* | -pl=* | --pl=*)
1192              ac_prev=PLATFORM ;;              echo "ERROR: The platform option has been removed.  Please specify"
1193          -platform=* | --platform=* | -pl=* | --pl=*)              echo "  the build options using the \"optfile\" mechanism."
1194              PLATFORM=$ac_optarg ;;              echo
1195                usage
1196                ;;
1197                    
1198          -rootdir | --rootdir | -rd | --rd)          -rootdir | --rootdir | -rd | --rd)
1199              ac_prev=ROOTDIR ;;              ac_prev=ROOTDIR ;;
# Line 476  for ac_option ; do Line 1220  for ac_option ; do
1220          -standarddirs=* | --standarddirs=*)          -standarddirs=* | --standarddirs=*)
1221              STANDARDDIRS=$ac_optarg ;;              STANDARDDIRS=$ac_optarg ;;
1222    
         -noopt | --noopt)  
             ac_prev=NOOPT ;;  
         -noopt=* | --noopt=*)  
             NOOPT=$ac_optarg ;;  
           
1223  #           -cpp | --cpp)  #           -cpp | --cpp)
1224  #               ac_prev=cpp ;;  #               ac_prev=cpp ;;
1225  #           -cpp=* | --cpp=*)  #           -cpp=* | --cpp=*)
1226  #               CPP=$ac_optarg ;;  #               CPP=$ac_optarg ;;
1227                        
1228            -cc | --cc)
1229                ac_prev=CC ;;
1230            -cc=* | --cc=*)
1231                CC=$ac_optarg ;;
1232            
1233          -fortran | --fortran | -fc | --fc)          -fortran | --fortran | -fc | --fc)
1234              ac_prev=FC ;;              ac_prev=FC ;;
1235          -fc=* | --fc=*)          -fc=* | --fc=*)
1236              FC=$ac_optarg ;;              FC=$ac_optarg ;;
1237                    
1238            -fs | --fs)
1239                ac_prev=FS ;;
1240            -fs=* | --fs=*)
1241                FS=$ac_optarg ;;
1242            
1243            -fs90 | --fs90)
1244                ac_prev=FS90 ;;
1245            -fs90=* | --fs90=*)
1246                FS90=$ac_optarg ;;
1247            
1248          -ieee | --ieee)          -ieee | --ieee)
1249              IEEE=true ;;              IEEE=true ;;
1250          -noieee | --noieee)          -noieee | --noieee)
1251              IEEE= ;;              IEEE= ;;
1252            
1253            -ts | --ts)
1254                TS=true ;;
1255            -papis | --papis)
1256                PAPIS=true ;;
1257            -foolad | --foolad)
1258                FOOLAD=true ;;
1259            -papi | --papi)
1260                PAPI=true ;;
1261            -hpmt | --hpmt)
1262                HPMT=true ;;
1263    
1264            -gsl | --gsl)
1265                GSL=true ;;
1266    
1267          -mpi | --mpi)          -mpi | --mpi)
1268              MPI=true ;;              MPI=true ;;
1269          -nompi | --nompi)          -mpi=* | --mpi=*)
1270              MPI= ;;              MPIPATH=$ac_optarg
1271                MPI=true ;;
1272                    
1273          -jam | --jam)  #       -jam | --jam)
1274              JAM=1 ;;  #           JAM=1 ;;
1275          -nojam | --nojam)  #       -nojam | --nojam)
1276              JAM=0 ;;  #           JAM=0 ;;
1277                    
1278          -ds | --ds)          -ds | --ds)
1279              DUMPSTATE=t ;;              DUMPSTATE=t ;;
# Line 518  for ac_option ; do Line 1287  for ac_option ; do
1287              ac_prev=TAMC_EXTRA ;;              ac_prev=TAMC_EXTRA ;;
1288          -tamc_extra=* | --tamc_extra=*)          -tamc_extra=* | --tamc_extra=*)
1289              TAMC_EXTRA=$ac_optarg ;;              TAMC_EXTRA=$ac_optarg ;;
1290            
1291            -ignoretime | -ignore_time | --ignoretime | --ignore_time)
1292                IGNORE_TIME="-DIGNORE_TIME" ;;
1293    
1294            -es | --es | -embed-source | --embed-source)
1295                EMBED_SRC=t ;;
1296    
1297          -*)          -*)
1298              echo "Error: unrecognized option: "$ac_option              echo "Error: unrecognized option: "$ac_option
# Line 533  for ac_option ; do Line 1308  for ac_option ; do
1308            
1309  done  done
1310    
1311    
1312  if test -f ./.genmakerc ; then  if test -f ./.genmakerc ; then
1313      echo      echo
1314      echo "WARNING: genmake2 has detected a copy of the old-style \"./.genmakerc\""      echo "WARNING: genmake2 has detected a copy of the old-style \"./.genmakerc\""
# Line 545  if test -f ./.genmakerc ; then Line 1321  if test -f ./.genmakerc ; then
1321      echo      echo
1322  fi  fi
1323    
1324    #  Find the MITgcm ${ROOTDIR}
1325  if test "x${ROOTDIR}" = x ; then  if test "x${ROOTDIR}" = x ; then
1326      if test "${PWD##/*/}" = "bin" -a -d ../model -a -d ../eesup -a -d ../pkg ; then      tmp=`echo $PWD | sed -e 's/\// /g' | $AWK '{print $NR}'`
1327        if test "x$tmp" = "xbin" -a -d ../model -a -d ../eesup -a -d ../pkg ; then
1328          ROOTDIR=".."          ROOTDIR=".."
1329      else      else
1330          for d in . .. ../.. ../../.. ../../../.. ../../../../.. ; do          for d in . .. ../.. ../../.. ../../../.. ../../../../.. ; do
1331              if [ -d "$d/model" -a -d "$d/eesupp" -a -d "$d/pkg" ]; then              if [ -d "$d/model" -a -d "$d/eesupp" -a -d "$d/pkg" ]; then
1332                  ROOTDIR=$d                  ROOTDIR=$d
1333                  echo -n "Warning:  ROOTDIR was not specified but there appears to be"                  printf "Warning:  ROOTDIR was not specified but there appears to be"
1334                  echo " a copy of MITgcm at \"$ROOTDIR\" so we'll try it."                  echo " a copy of MITgcm at \"$ROOTDIR\" so we'll try it."
1335                  break                  break
1336              fi              fi
# Line 570  if test ! -d ${ROOTDIR} ; then Line 1348  if test ! -d ${ROOTDIR} ; then
1348      exit 1      exit 1
1349  fi  fi
1350    
1351    #  Find the MITgcm ${THISVER}
1352    if test -f "${ROOTDIR}/doc/tag-index" ; then
1353        THISVER=`grep '^checkpoint' ${ROOTDIR}/doc/tag-index | head -1`
1354    fi
1355    
1356    if test "x$MAKEFILE" = x ; then
1357        MAKEFILE="Makefile"
1358    fi
1359    
1360  echo "  getting OPTFILE information:  "  echo "  getting OPTFILE information:  "
1361  if test "x${OPTFILE}" = x ; then  if test "x${OPTFILE}" = x ; then
1362      if test "x$MITGCM_OF" = x ; then      if test "x$MITGCM_OF" = x ; then
# Line 583  fi Line 1370  fi
1370  if test "x$OPTFILE" != xNONE ; then  if test "x$OPTFILE" != xNONE ; then
1371      if test -f "$OPTFILE" -a -r "$OPTFILE" ; then      if test -f "$OPTFILE" -a -r "$OPTFILE" ; then
1372          echo "    using OPTFILE=\"$OPTFILE\""          echo "    using OPTFILE=\"$OPTFILE\""
1373          source "$OPTFILE"          . "$OPTFILE"
1374          RETVAL=$?          RETVAL=$?
1375          if test "x$RETVAL" != x0 ; then          if test "x$RETVAL" != x0 ; then
1376              echo -n "Error: failed to source OPTFILE \"$OPTFILE\""              printf "Error: failed to source OPTFILE \"$OPTFILE\""
1377              echo "--please check that variable syntax is bash-compatible"              echo "--please check that variable syntax is bash-compatible"
1378              exit 1              exit 1
1379          fi          fi
# Line 610  fi Line 1397  fi
1397  if test "x${AD_OPTFILE}" != xNONE ; then  if test "x${AD_OPTFILE}" != xNONE ; then
1398      if test -f "$AD_OPTFILE" -a -r "$AD_OPTFILE" ; then      if test -f "$AD_OPTFILE" -a -r "$AD_OPTFILE" ; then
1399          echo "    using AD_OPTFILE=\"$AD_OPTFILE\""          echo "    using AD_OPTFILE=\"$AD_OPTFILE\""
1400          source "$AD_OPTFILE"          . "$AD_OPTFILE"
1401          RETVAL=$?          RETVAL=$?
1402          if test "x$RETVAL" != x0 ; then          if test "x$RETVAL" != x0 ; then
1403              echo -n "Error: failed to source AD_OPTFILE \"$AD_OPTFILE\""              printf "Error: failed to source AD_OPTFILE \"$AD_OPTFILE\""
1404              echo "--please check that variable syntax is bash-compatible"              echo "--please check that variable syntax is bash-compatible"
1405              exit 1              exit 1
1406          fi          fi
# Line 626  if test "x${AD_OPTFILE}" != xNONE ; then Line 1413  if test "x${AD_OPTFILE}" != xNONE ; then
1413      fi      fi
1414  fi  fi
1415    
1416  #  Check that FC, LINK, CPP, and S64 are defined.  If not, complain  #====================================================================
1417  #  and abort!  #  Set default values if not set by the optfile
1418    #
1419    #  Check that FC, CC, LINK, CPP, S64, LN, and MAKE are defined.  If not,
1420    #  either set defaults or complain and abort!
1421    if test ! "x$BASH" = x ; then
1422        # add a trailing space so that it works within the Makefile syntax (see below)
1423        BASH="$BASH "
1424    fi
1425  if test "x$FC" = x ; then  if test "x$FC" = x ; then
1426      cat <<EOF 1>&2      cat <<EOF 1>&2
1427    
# Line 638  Error: no Fortran compiler: please speci Line 1432  Error: no Fortran compiler: please speci
1432  EOF  EOF
1433      exit 1      exit 1
1434  fi  fi
1435    if test "x$CC" = x ; then
1436        CC=cc
1437    #     cat <<EOF 1>&2
1438    # Error: no C compiler: please specify using one of the following:
1439    #   1) within the options file ("CC=...") as specified by "-of=OPTFILE"
1440    #   2) the "-cc=XXX" command-line option
1441    #   3) the "./genmake_local" file
1442    # EOF
1443    #     exit 1
1444    fi
1445  if test "x$LINK" = x ; then  if test "x$LINK" = x ; then
1446      LINK=$FC      LINK=$FC
1447  fi  fi
1448    if test "x$MAKE" = x ; then
1449        MAKE="make"
1450    fi
1451  if test "x$CPP" = x ; then  if test "x$CPP" = x ; then
1452      CPP="cpp"      CPP=cpp
1453  fi  fi
1454    #EH3 === UGLY ===
1455    #  The following is an ugly little hack to check for $CPP in /lib/ and
1456    #  it should eventually be replaced with a more general function that
1457    #  searches a combo of the user's path and a list of "usual suspects"
1458    #  to find the correct location for binaries such as $CPP.
1459    for i in " " "/lib/" ; do
1460        echo "#define A a" | $i$CPP > test_cpp 2>&1 && CPP=$i$CPP
1461    done
1462    #EH3 === UGLY ===
1463  echo "#define A a" | $CPP > test_cpp 2>&1  echo "#define A a" | $CPP > test_cpp 2>&1
1464  RETVAL=$?  RETVAL=$?
1465  if test "x$RETVAL" != x0 ; then  if test "x$RETVAL" != x0 ; then
# Line 653  Error: C pre-processor "$CPP" failed the Line 1469  Error: C pre-processor "$CPP" failed the
1469    
1470    1) within the options file ("CPP=...") as specified by "-of=OPTFILE"    1) within the options file ("CPP=...") as specified by "-of=OPTFILE"
1471    2) the "./genmake_local" file    2) the "./genmake_local" file
1472      3) with the CPP environment variable
1473    
1474  EOF  EOF
1475      exit 1      exit 1
1476  else  else
1477      rm -f test_cpp      rm -f test_cpp
1478  fi  fi
1479  if test "x$MAKEDEPEND" = x ; then  look_for_makedepend
1480      MAKEDEPEND=makedepend  if test "x$LN" = x ; then
1481        LN="ln -s"
1482  fi  fi
1483    echo "test" > genmake_test_ln
1484    $LN genmake_test_ln genmake_tlink
1485    RETVAL=$?
1486    if test "x$RETVAL" != x0 ; then
1487        cat <<EOF 1>&2
1488    
1489    Error: The command "ln -s" failed -- please specify a working soft-link
1490      command in the optfile.
1491    
1492    EOF
1493        exit 1
1494    fi
1495    test -L genmake_tlink > /dev/null 2>&1
1496    RETVAL=$?
1497    if test "x$RETVAL" = x0 ; then
1498        HAVE_TEST_L=t
1499    fi
1500    rm -f genmake_test_ln genmake_tlink
1501    
1502    #  Check for broken *.F/*.f handling and fix if possible
1503    check_for_broken_Ff
1504    
1505    if test ! "x$MPI" = x ; then
1506          echo "  Turning on MPI cpp macros"
1507          DEFINES="$DEFINES -DALLOW_USE_MPI -DALWAYS_USE_MPI"
1508    fi
1509    
1510    if test ! "x$TS" = x ; then
1511          echo "  Turning on timing per timestep"
1512          if test ! "x$FOOLAD" = x ; then
1513                DEFINES="$DEFINES -DTIME_PER_TIMESTEP_SFP"
1514          else
1515                DEFINES="$DEFINES -DTIME_PER_TIMESTEP"
1516          fi
1517    fi
1518    if test ! "x$PAPIS" = x ; then
1519          echo "  Turning on PAPI flop summary per timestep"
1520          echo "  Please make sure PAPIINC, PAPILIB are defined"
1521          if test ! "x$FOOLAD" = x ; then
1522                DEFINES="$DEFINES -DUSE_PAPI_FLOPS_SFP"
1523          else
1524                DEFINES="$DEFINES -DUSE_PAPI_FLOPS"
1525          fi
1526          INCLUDES="$INCLUDES $PAPIINC"
1527          LIBS="$LIBS $PAPILIB"
1528    fi
1529    if test ! "x$PAPI" = x ; then
1530          if test ! "x$PAPIS" = x ; then
1531              echo "  PAPI performance analysis and flop summary per timestep cannot co-exist!"
1532              echo "  Sticking with PAPI flop summary per timestep!"
1533          else
1534              echo "  Turning on performance analysis with PAPI"
1535              echo "  Please make sure PAPIINC, PAPILIB are defined"
1536              DEFINES="$DEFINES -DUSE_PAPI"
1537              INCLUDES="$INCLUDES $PAPIINC"
1538              LIBS="$LIBS $PAPILIB"
1539          fi
1540    fi
1541    if test ! "x$HPMT" = x ; then
1542          if test ! "x$PAPI" = x ; then
1543              echo "  PAPI and the HPM Toolkit cannot co-exist!"
1544              echo "  Sticking with PAPI!"
1545          else
1546              echo "  Turning on performance analysis with the HPM Toolkit"
1547              echo "  Please make sure HPMTINC, HPMTLIB are defined"
1548              DEFINES="$DEFINES -DUSE_LIBHPM"
1549              INCLUDES="$INCLUDES $HPMTINC"
1550              LIBS="$LIBS $HPMTLIB"
1551          fi
1552    fi
1553    if test ! "x$GSL" = x ; then
1554          echo "  Turning on use of GSL to control floating point calculations"
1555          echo "  Please make sure GSLINC, GSLLIB are defined"
1556          DEFINES="$DEFINES -DUSE_GSL_IEEE"
1557          INCLUDES="$INCLUDES $GSLINC"
1558          LIBS="$LIBS $GSLLIB"
1559    fi
1560    
1561    printf "\n===  Checking system libraries  ===\n"
1562    printf "  Do we have the system() command using $FC...  "
1563    cat > genmake_tcomp.$FS <<EOF
1564          program hello
1565          call system('echo hi')
1566          end
1567    EOF
1568    $FC $FFLAGS -o genmake_tcomp genmake_tcomp.$FS > genmake_tcomp.log 2>&1
1569    RETVAL=$?
1570    if test "x$RETVAL" = x0 ; then
1571        HAVE_SYSTEM=t
1572        DEFINES="$DEFINES -DHAVE_SYSTEM"
1573        echo "yes"
1574    else
1575        HAVE_SYSTEM=
1576        echo "no"
1577    fi
1578    rm -f genmake_tcomp*
1579    
1580    printf "  Do we have the fdate() command using $FC...  "
1581    cat > genmake_tcomp.$FS <<EOF
1582          program hello
1583          CHARACTER*(128) string
1584          string = ' '
1585          call fdate( string )
1586          print *, string
1587          end
1588    EOF
1589    $FC $FFLAGS -o genmake_tcomp genmake_tcomp.$FS > genmake_tcomp.log 2>&1
1590    RETVAL=$?
1591    if test "x$RETVAL" = x0 ; then
1592        HAVE_FDATE=t
1593        DEFINES="$DEFINES -DHAVE_FDATE"
1594        echo "yes"
1595    else
1596        HAVE_FDATE=
1597        echo "no"
1598    fi
1599    rm -f genmake_tcomp*
1600    
1601    printf "  Do we have the etime() command using $FC...  "
1602    cat > genmake_tcomp.$FS <<EOF
1603          program hello
1604          REAL*4 ACTUAL, TARRAY(2)
1605          EXTERNAL ETIME
1606          REAL*4 ETIME
1607          actual = etime( tarray )
1608          print *, tarray
1609          end
1610    EOF
1611    $FC $FFLAGS -o genmake_tcomp genmake_tcomp.$FS > genmake_tcomp.log 2>&1
1612    RETVAL=$?
1613    if test "x$RETVAL" = x0 ; then
1614        HAVE_ETIME=t
1615        DEFINES="$DEFINES -DHAVE_ETIME"
1616        echo "yes"
1617    else
1618        HAVE_ETIME=
1619        echo "no"
1620    fi
1621    rm -f genmake_tcomp*
1622    
1623    printf "  Can we call simple C routines (here, \"cloc()\") using $FC...  "
1624    check_HAVE_CLOC
1625    if test "x$HAVE_CLOC" != x ; then
1626        echo "yes"
1627    else
1628        echo "no"
1629        if test "x$EMBED_SRC" = xt ; then
1630            echo "    WARNING: you requested file embedding but it has"
1631            echo "      been disabled since C code cannot be called"
1632            EMBED_SRC=
1633        fi
1634    fi
1635    rm -f genmake_t*
1636    
1637    printf "  Can we unlimit the stack size using $FC...  "
1638    check_HAVE_SETRLSTK
1639    if test "x$HAVE_SETRLSTK" != x ; then
1640        echo "yes"
1641    else
1642        echo "no"
1643    fi
1644    rm -f genmake_t*
1645    
1646    printf "  Can we register a signal handler using $FC...  "
1647    check_HAVE_SIGREG
1648    if test "x$HAVE_SIGREG" != x ; then
1649        echo "yes"
1650    else
1651        echo "no"
1652    fi
1653    rm -f genmake_t*
1654    
1655    printf "  Can we use stat() through C calls...  "
1656    check_HAVE_STAT
1657    if test "x$HAVE_STAT" != x ; then
1658        echo "yes"
1659    else
1660        echo "no"
1661    fi
1662    rm -f genmake_t*
1663    
1664    printf "  Can we create NetCDF-enabled binaries...  "
1665    check_netcdf_libs
1666    if test "x$HAVE_NETCDF" != x ; then
1667        echo "yes"
1668    else
1669        echo "no"
1670    fi
1671    DEFINES="$DEFINES $IGNORE_TIME"
1672    
1673    if test "x$EMBED_SRC" = xt ; then
1674        build_embed_encode
1675    fi
1676    if test "x$EMBED_SRC" = xt ; then
1677        ENABLE="$ENABLE embed_files"
1678    fi
1679    
1680    
1681  printf "\n===  Setting defaults  ===\n"  printf "\n===  Setting defaults  ===\n"
1682  echo -n "  Adding MODS directories:  "  printf "  Adding MODS directories:  "
1683  for d in $MODS ; do  for d in $MODS ; do
1684      if test ! -d $d ; then      if test ! -d $d ; then
1685          echo          echo
1686          echo "Error: MODS directory \"$d\" not found!"          echo "Error: MODS directory \"$d\" not found!"
1687          exit 1          exit 1
1688      else      else
1689          echo -n " $d"          printf " $d"
1690          SOURCEDIRS="$SOURCEDIRS $d"          SOURCEDIRS="$SOURCEDIRS $d"
1691          INCLUDEDIRS="$INCLUDEDIRS $d"          INCLUDEDIRS="$INCLUDEDIRS $d"
1692      fi      fi
1693  done  done
1694  echo  echo
1695    
 if test "x$MAKEFILE" = x ; then  
     MAKEFILE="Makefile"  
 fi  
1696  if test "x${PLATFORM}" = x ; then  if test "x${PLATFORM}" = x ; then
1697      PLATFORM=$p_PLATFORM      PLATFORM=$p_PLATFORM
1698  fi  fi
1699    
1700  if test "x${EXEDIR}" = x ; then  if test "x${EXEDIR}" = x ; then
1701      if test "${PWD##/*/}" = "bin" -a -d ../exe -a $ROOTDIR = .. ; then      tmp=`echo $PWD | sed -e 's/\// /g' | $AWK '{print $NR}'`
1702        if test "x$tmp" = "xbin" -a -d ../exe -a $ROOTDIR = .. ; then
1703          EXEDIR=../exe          EXEDIR=../exe
1704      else      else
1705          EXEDIR=.          EXEDIR=.
# Line 701  if test "x${TOOLSDIR}" = x ; then Line 1714  if test "x${TOOLSDIR}" = x ; then
1714      TOOLSDIR="$ROOTDIR/tools"      TOOLSDIR="$ROOTDIR/tools"
1715  fi  fi
1716  if test ! -d ${TOOLSDIR} ; then  if test ! -d ${TOOLSDIR} ; then
1717      echo "Error: the specified $TOOLSDIR (\"$TOOLSDIR\") does not exist!"      echo "Error: the specified TOOLSDIR (\"$TOOLSDIR\") does not exist!"
1718      exit 1      exit 1
1719  fi  fi
1720  if test "x$S64" = x ; then  if test "x$S64" = x ; then
1721      S64='$(TOOLSDIR)/set64bitConst.sh'      echo "3.0 _d 3" | ${TOOLSDIR}/set64bitConst.sh > /dev/null 2>&1
1722        RETVAL=$?
1723        if test "x${RETVAL}" = x0 ; then
1724            S64='$(TOOLSDIR)/set64bitConst.sh'
1725        else
1726            echo "3.0 _d 3" | ${TOOLSDIR}/set64bitConst.csh > /dev/null 2>&1
1727            RETVAL=$?
1728            if test "x${RETVAL}" = x0 ; then
1729                S64='$(TOOLSDIR)/set64bitConst.csh'
1730            else
1731                cat <<EOF
1732    
1733    ERROR: neither of the two default scripts:
1734    
1735        ${TOOLSDIR}/set64bitConst.sh
1736        ${TOOLSDIR}/set64bitConst.csh
1737    
1738      are working so please check paths or specify (with \$S64) a
1739      working version of this script.
1740    
1741    EOF
1742                exit 1
1743            fi
1744        fi
1745  fi  fi
1746    THIS_SCRIPT=`echo ${0} | sed 's:'$TOOLSDIR':\$(TOOLSDIR):'`
1747    
1748  EXECUTABLE=${EXECUTABLE:-mitgcmuv}  EXECUTABLE=${EXECUTABLE:-mitgcmuv}
1749    
# Line 715  EXECUTABLE=${EXECUTABLE:-mitgcmuv} Line 1752  EXECUTABLE=${EXECUTABLE:-mitgcmuv}
1752  #  they appear as regular source code  #  they appear as regular source code
1753  if test -r $ROOTDIR"/eesupp/src/Makefile" ; then  if test -r $ROOTDIR"/eesupp/src/Makefile" ; then
1754      echo "  Making source files in eesupp from templates"      echo "  Making source files in eesupp from templates"
1755      $MAKE -C $ROOTDIR"/eesupp/src/" > make_eesupp.errors 2>&1      ( cd $ROOTDIR"/eesupp/src/" && $MAKE ) > make_eesupp.errors 2>&1
1756      RETVAL=$?      RETVAL=$?
1757      if test "x${RETVAL}" = x0 ; then      if test "x${RETVAL}" = x0 ; then
1758          rm -f make_eesupp.errors          rm -f make_eesupp.errors
1759      else      else
1760          echo "Error: problem encountered while building source files in eesupp:"          echo "Error: problem encountered while building source files in eesupp:"
1761          cat make_eesupp.errors          cat make_eesupp.errors 1>&2
1762          exit 1          exit 1
1763      fi      fi
1764  fi  fi
1765    
1766    #same for exch2
1767    if test -r $ROOTDIR"/pkg/exch2/Makefile" ; then
1768        echo "  Making source files in exch2 from  templates"
1769        ( cd $ROOTDIR"/pkg/exch2/" && $MAKE ) > make_exch2.errors 2>&1
1770        RETVAL=$?
1771        if test "x${RETVAL}" = x0 ; then
1772            rm -f make_exch2.errors
1773        else
1774            echo "Error: problem encountered while building source files in exch2:"
1775            cat make_exch2.errors 1>&2
1776            exit 1
1777        fi
1778    fi
1779    
1780  printf "\n===  Determining package settings  ===\n"  printf "\n===  Determining package settings  ===\n"
1781  if  test "x${PDEPEND}" = x ; then  if  test "x${PDEPEND}" = x ; then
1782      tmp=$ROOTDIR"/pkg/pkg_depend"      tmp=$ROOTDIR"/pkg/pkg_depend"
# Line 752  if test ! "x${RETVAL}" = x0 ; then Line 1803  if test ! "x${RETVAL}" = x0 ; then
1803      echo "Error: unable to parse package dependencies -- please check PDEPEND=\"$PDEPEND\""      echo "Error: unable to parse package dependencies -- please check PDEPEND=\"$PDEPEND\""
1804      exit 1      exit 1
1805  fi  fi
1806  source ./.pd_tmp  . ./.pd_tmp
1807  rm -f ./.pd_tmp  rm -f ./.pd_tmp
1808    
1809  #  Search for default packages.  Note that a "$ROOTDIR/pkg/pkg_groups"  #  Search for default packages.  Note that a "$ROOTDIR/pkg/pkg_groups"
1810  #  file should eventually be added so that, for convenience, one can  #  file should eventually be added so that, for convenience, one can
1811  #  specify groups of packages using names like "ocean" and "atmosphere".  #  specify groups of packages using names like "ocean" and "atmosphere".
1812  echo  -n "  checking default package list:  "  echo "  checking default package list:  "
1813  if test "x${PDEFAULT}" = x ; then  if test "x${PDEFAULT}" = x ; then
1814      for i in "." $MODS ; do      for i in "." $MODS ; do
1815          if test -r $i"/packages.conf" ; then          if test -r $i"/packages.conf" ; then
# Line 771  if test "x${PDEFAULT}" = x ; then Line 1822  if test "x${PDEFAULT}" = x ; then
1822      PDEFAULT="$ROOTDIR/pkg/pkg_default"      PDEFAULT="$ROOTDIR/pkg/pkg_default"
1823  fi  fi
1824  if test "x${PDEFAULT}" = xNONE ; then  if test "x${PDEFAULT}" = xNONE ; then
1825      echo "default packages file disabled"      echo "    default packages file disabled"
1826  else  else
1827      if test ! -r $PDEFAULT ; then      if test ! -r $PDEFAULT ; then
         echo ""  
1828          echo "Warning:  can't read default packages from PDEFAULT=\"$PDEFAULT\""          echo "Warning:  can't read default packages from PDEFAULT=\"$PDEFAULT\""
1829      else      else
1830          echo "  using PDEFAULT=\"$PDEFAULT\""          echo "    using PDEFAULT=\"$PDEFAULT\""
1831          #  Strip the comments and add all the names          #  Strip the comments and add all the names
1832          def=`cat $PDEFAULT | sed -e 's/#.*$//g' | $AWK '(NF>0){print $0}'`          def=`cat $PDEFAULT | sed -e 's/#.*$//g' | $AWK '(NF>0){print $0}'`
1833          RETVAL=$?          RETVAL=$?
1834          if test "x${RETVAL}" != x0 ; then          if test "x${RETVAL}" != x0 ; then
1835              echo -n "Error: can't parse default package list "              printf "Error: can't parse default package list "
1836              echo "-- please check PDEFAULT=\"$PDEFAULT\""              echo "-- please check PDEFAULT=\"$PDEFAULT\""
1837              exit 1              exit 1
1838          fi          fi
# Line 790  else Line 1840  else
1840              PACKAGES="$PACKAGES $i"              PACKAGES="$PACKAGES $i"
1841          done          done
1842          echo "    before group expansion packages are: $PACKAGES"          echo "    before group expansion packages are: $PACKAGES"
1843          expand_pkg_groups          RET=1
1844            while test $RET = 1 ; do expand_pkg_groups; RET=$?; done
1845          echo "    after group expansion packages are:  $PACKAGES"          echo "    after group expansion packages are:  $PACKAGES"
1846      fi      fi
1847  fi  fi
1848    
1849  echo "  applying DISABLE settings"  echo "  applying DISABLE settings"
1850    for i in $PACKAGES ; do
1851        echo $i >> ./.tmp_pack
1852    done
1853    for i in `grep  "-" ./.tmp_pack` ; do
1854        j=`echo $i | sed 's/[-]//'`
1855        DISABLE="$DISABLE $j"
1856    done
1857  pack=  pack=
1858  for p in $PACKAGES ; do  for p in $PACKAGES ; do
1859      addit="t"      addit="t"
# Line 812  PACKAGES="$pack" Line 1870  PACKAGES="$pack"
1870  echo "  applying ENABLE settings"  echo "  applying ENABLE settings"
1871  echo "" > ./.tmp_pack  echo "" > ./.tmp_pack
1872  PACKAGES="$PACKAGES $ENABLE"  PACKAGES="$PACKAGES $ENABLE"
1873    # Test if each explicitly referenced package exists
1874  for i in $PACKAGES ; do  for i in $PACKAGES ; do
1875      if test ! -d "$ROOTDIR/pkg/$i" ; then      j=`echo $i | sed 's/[-+]//'`
1876        if test ! -d "$ROOTDIR/pkg/$j" ; then
1877          echo "Error: can't find package $i at \"$ROOTDIR/pkg/$i\""          echo "Error: can't find package $i at \"$ROOTDIR/pkg/$i\""
1878          exit 1          exit 1
1879      fi      fi
1880      echo $i >> ./.tmp_pack      echo $i >> ./.tmp_pack
1881  done  done
 pack=`cat ./.tmp_pack | sort | uniq`  
 rm -f ./.tmp_pack  
1882  PACKAGES=  PACKAGES=
1883  for i in $pack ; do  for i in `grep -v "-" ./.tmp_pack | sort | uniq` ; do
1884      PACKAGES="$PACKAGES $i"      PACKAGES="$PACKAGES $i"
1885  done  done
1886    rm -f ./.tmp_pack
1887  echo "    packages are:  $PACKAGES"  echo "    packages are:  $PACKAGES"
1888    
1889    #  Check availability of NetCDF and then either build the MNC template
1890    #  files or delete mnc from the list of available packages.
1891    echo $PACKAGES | grep ' mnc ' > /dev/null 2>&1
1892    RETVAL=$?
1893    if test "x$RETVAL" = x0 ; then
1894        if test "x$HAVE_NETCDF" != xt ; then
1895            cat <<EOF
1896    
1897    *********************************************************************
1898    WARNING: the "mnc" package was enabled but tests failed to compile
1899      NetCDF applications.  Please check that:
1900    
1901      1) NetCDF is correctly installed for this compiler and
1902      2) the LIBS variable (within the "optfile") specifies the correct
1903           NetCDF library to link against.
1904    
1905      Due to this failure, the "mnc" package is now DISABLED.
1906    *********************************************************************
1907    
1908    EOF
1909            PACKAGES=`echo $PACKAGES | sed -e 's/mnc//g'`
1910            DISABLE="$DISABLE mnc"
1911        else
1912            ( cd $ROOTDIR"/pkg/mnc" && $MAKE testclean && $MAKE templates ) > make_mnc.errors 2>&1
1913            RETVAL=$?
1914            if test "x${RETVAL}" = x0 ; then
1915                rm -f make_mnc.errors
1916            else
1917                echo "Error: problem encountered while building source files in pkg/mnc:"
1918                cat make_mnc.errors 1>&2
1919                exit 1
1920            fi
1921        fi
1922    fi
1923    
1924  echo "  applying package dependency rules"  echo "  applying package dependency rules"
1925  ck=  ck=
1926  while test "x$ck" != xtt ; do  while test "x$ck" != xtt ; do
# Line 891  while test "x$ck" != xtt ; do Line 1985  while test "x$ck" != xtt ; do
1985              echo "  the dependency rules for \"$dname\""              echo "  the dependency rules for \"$dname\""
1986              exit 1              exit 1
1987          fi          fi
1988          i=$(( $i + 1 ))          i=`echo "$i + 1" | bc -l`
1989            #i=$(( $i + 1 ))
1990      done      done
1991      ck=$ck"t"      ck=$ck"t"
1992  done  done
# Line 910  for i in $PACKAGES ; do Line 2005  for i in $PACKAGES ; do
2005      fi      fi
2006  done  done
2007    
   
2008  # Create a list of #define and #undef to enable/disable packages  # Create a list of #define and #undef to enable/disable packages
2009  PACKAGES_DOT_H=PACKAGES_CONFIG.h  PACKAGES_DOT_H=PACKAGES_CONFIG.h
 cat <<EOF >$PACKAGES_DOT_H".tmp"  
 C=== GENMAKE v2 ===  
 C  The following defines have been set by GENMAKE, so please do not  
 C  edit anything below these comments.  In general, you should  
 C  add or remove packages by re-running genmake with different  
 C  "-enable" and/or "-disable" options.  
   
 #ifndef PACKAGES_H  
 #define PACKAGES_H  
   
 C  Packages disabled by genmake:  
 EOF  
2010  #  The following UGLY HACK sets multiple "#undef"s and it needs to go  #  The following UGLY HACK sets multiple "#undef"s and it needs to go
2011  #  away.  On 2003-08-12, CNH, JMC, and EH3 agreed that the CPP_OPTIONS.h  #  away.  On 2003-08-12, CNH, JMC, and EH3 agreed that the CPP_OPTIONS.h
2012  #  file would eventually be split up so that all package-related #define  #  file would eventually be split up so that all package-related #define
2013  #  statements could be separated and handled only by genmake.  #  statements could be separated and handled only by genmake.
2014  names=`ls -1 "$ROOTDIR/pkg"`  names=`ls -1 "$ROOTDIR/pkg"`
2015  all_pack=  all_pack=
2016    DISABLED_PACKAGES=
2017  for n in $names ; do  for n in $names ; do
2018      if test -d "$ROOTDIR/pkg/$n" -a "x$n" != xCVS ; then      if test -d "$ROOTDIR/pkg/$n" -a "x$n" != xCVS ; then
2019          has_pack="f"          has_pack="f"
# Line 941  for n in $names ; do Line 2024  for n in $names ; do
2024              fi              fi
2025          done          done
2026          if test "x$has_pack" = xf ; then          if test "x$has_pack" = xf ; then
2027              undef=`echo "ALLOW_$n" | $AWK '{print toupper($0)}'`              undef=`echo "ALLOW_$n" | sed -e 'y/abcdefghijklmnopqrstuvwxyz/ABCDEFGHIJKLMNOPQRSTUVWXYZ/'`
2028              echo "#undef $undef" >> $PACKAGES_DOT_H".tmp"              DISABLED_PACKAGES="$DISABLED_PACKAGES -U$undef"
 #           DEFINES="$DEFINES -U$undef"  
   
 #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!  
             case $n in  
                 mom_fluxform)  
                     DEFINES="$DEFINES -DDISABLE_MOM_FLUXFORM"  
                     ;;  
                 mom_vecinv)  
                     DEFINES="$DEFINES -DDISABLE_MOM_VECINV"  
                     ;;  
             esac  
 #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!  
   
2029          fi          fi
2030      fi      fi
2031  done  done
2032  cat <<EOF >>$PACKAGES_DOT_H".tmp"  ENABLED_PACKAGES=
   
 C  Packages enabled by genmake:  
 EOF  
2033  for i in $PACKAGES ; do  for i in $PACKAGES ; do
2034      def=`echo "ALLOW_$i" | $AWK '{print toupper($0)}'`      def=`echo "ALLOW_$i" | sed -e 'y/abcdefghijklmnopqrstuvwxyz/ABCDEFGHIJKLMNOPQRSTUVWXYZ/'`
2035      echo "#define $def" >> $PACKAGES_DOT_H".tmp"      ENABLED_PACKAGES="$ENABLED_PACKAGES -D$def"
2036  #eh3 DEFINES="$DEFINES -D$def"  #eh3 DEFINES="$DEFINES -D$def"
2037    
2038  #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!  #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!
2039      case $i in      case $i in
2040          aim_v23)          aim_v23)
2041              echo "#define   ALLOW_AIM" >> $PACKAGES_DOT_H".tmp"              ENABLED_PACKAGES="$ENABLED_PACKAGES -DALLOW_AIM"
2042              DEFINES="$DEFINES -DALLOW_AIM"              echo "Warning: ALLOW_AIM is set to enable aim_v23."
             echo "Warning: ALLOW_AIM is set to enable aim_v23. This is REALLY ugly Jean-Michel :-)"  
2043              ;;              ;;
2044      esac      esac
2045  #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!  #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!
2046    
2047  done  done
 cat <<EOF >>$PACKAGES_DOT_H".tmp"  
   
 #endif /* PACKAGES_H */  
 EOF  
   
 if test ! -f $PACKAGES_DOT_H ; then  
     mv -f $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H  
 else  
     cmp $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H  
     RETVAL=$?  
     if test "x$RETVAL" = x0 ; then  
         rm -f $PACKAGES_DOT_H".tmp"  
     else  
         mv -f $PACKAGES_DOT_H $PACKAGES_DOT_H".bak"  
         mv -f $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H  
     fi  
 fi  
2048    
2049  echo "  Adding STANDARDDIRS"  echo "  Adding STANDARDDIRS"
2050  BUILDDIR=${BUILDDIR:-.}  BUILDDIR=${BUILDDIR:-.}
2051  if test "x$STANDARDDIRS" = x ; then  if test "x$STANDARDDIRS" = xUSE_THE_DEFAULT ; then
2052      STANDARDDIRS="eesupp model"      STANDARDDIRS="eesupp model"
2053  fi  fi
2054  for d in $STANDARDDIRS ; do  if test "x$STANDARDDIRS" != x ; then
2055      adr="$ROOTDIR/$d/src"      for d in $STANDARDDIRS ; do
2056      if test ! -d $adr ; then          adr="$ROOTDIR/$d/src"
2057          echo "Error:  directory $adr not found -- please check that ROOTDIR=\"$ROOTDIR\""          if test ! -d $adr ; then
2058          echo "  is correct and that you correctly specified the STANDARDDIRS option"              echo "Error:  directory $adr not found -- please check that ROOTDIR=\"$ROOTDIR\""
2059          exit 1              echo "  is correct and that you correctly specified the STANDARDDIRS option"
2060      else              exit 1
2061          SOURCEDIRS="$SOURCEDIRS $adr"          else
2062      fi              SOURCEDIRS="$SOURCEDIRS $adr"
2063      adr="$ROOTDIR/$d/inc"          fi
2064      if test ! -d $adr ; then          adr="$ROOTDIR/$d/inc"
2065          echo "Error:  directory $adr not found -- please check that ROOTDIR=\"$ROOTDIR\""          if test ! -d $adr ; then
2066          echo "  is correct and that you correctly specified the STANDARDDIRS option"              echo "Error:  directory $adr not found -- please check that ROOTDIR=\"$ROOTDIR\""
2067          exit 1              echo "  is correct and that you correctly specified the STANDARDDIRS option"
2068      else              exit 1
2069          INCLUDEDIRS="$INCLUDEDIRS $adr"          else
2070      fi              INCLUDEDIRS="$INCLUDEDIRS $adr"
2071  done          fi
2072        done
2073    fi
2074    
2075  echo "  Searching for CPP_OPTIONS.h in order to warn about the presence"  echo "  Searching for *OPTIONS.h files in order to warn about the presence"
2076  echo "    of \"#define ALLOW_PKGNAME\"-type statements:"  echo "    of \"#define \"-type statements that are no longer allowed:"
2077  CPP_OPTIONS=  CPP_OPTIONS=
2078    CPP_EEOPTIONS=
2079  spaths=". $INCLUDEDIRS"  spaths=". $INCLUDEDIRS"
2080    names=`ls -1 "$ROOTDIR/pkg"`
2081  for i in $spaths ; do  for i in $spaths ; do
2082      try="$i/CPP_OPTIONS.h"      try="$i/CPP_OPTIONS.h"
2083      #  echo -n "    trying $try : "      if test -f $try -a -r $try -a "x$CPP_OPTIONS" = x ; then
     if test -f $try -a -r $try ; then  
2084          echo "    found CPP_OPTIONS=\"$try\""          echo "    found CPP_OPTIONS=\"$try\""
2085          CPP_OPTIONS="$try"          CPP_OPTIONS="$try"
2086          break          # New safety test: make sure packages are not mentioned in CPP_OPTIONS.h
2087            for n in $names ; do
2088                test_for_package_in_cpp_options $CPP_OPTIONS $n
2089            done
2090        fi
2091        try="$i/CPP_EEOPTIONS.h"
2092        if test -f $try -a -r $try -a "x$CPP_EEOPTIONS" = x ; then
2093            echo "    found CPP_EEOPTIONS=\"$try\""
2094            # New safety test: make sure MPI is not determined by CPP_EEOPTIONS.h
2095    #**** not yet enabled ****
2096    #        test_for_mpi_in_cpp_eeoptions $try
2097    #**** not yet enabled ****
2098            CPP_EEOPTIONS="$try"
2099      fi      fi
2100  done  done
2101  if test "x$CPP_OPTIONS" = x ; then  if test "x$CPP_OPTIONS" = x ; then
2102      echo "Error: can't find \"CPP_OPTIONS.h\" in the path list: $spaths"      echo "Error: can't find \"CPP_OPTIONS.h\" in the path list: $spaths"
2103      exit 1      exit 1
2104  fi  fi
 # New safety test: make sure packages are not mentioned in CPP_OPTIONS.h  
 names=`ls -1 "$ROOTDIR/pkg"`  
 for n in $names ; do  
     test_for_package_in_cpp_options $CPP_OPTIONS $n  
 done  
   
2105    
2106  #  Here, we build the list of files to be "run through" the adjoint  #  Here, we build the list of files to be "run through" the adjoint
2107  #  compiler.  #  compiler.
# Line 1057  for i in $SOURCEDIRS ; do Line 2115  for i in $SOURCEDIRS ; do
2115          cat $i/$j >> ad_files          cat $i/$j >> ad_files
2116      done      done
2117  done  done
2118    if test ! "x"$FS = "x.f" ; then
2119  cat <<EOF > adjoint_sed      cat ad_files | sed -e "s/\.f/.$FS/g" > ad_files_f
2120  s/call adopen(/call adopen ( mythid,\\      mv -f ad_files_f ad_files
2121       \&           /g  fi
 s/call adclose(/call adclose( mythid,\\  
      \&           /g  
 s/call adread(/call adread ( mythid,\\  
      \&           /g  
 s/call adwrite(/call adwrite( mythid,\\  
      \&           /g  
   
 EOF  
2122    
2123  echo  echo
2124  echo "===  Creating the Makefile  ==="  echo "===  Creating the Makefile  ==="
2125  echo "  setting INCLUDES"  echo "  setting INCLUDES"
2126  for i in $INCLUDEDIRS ; do  for i in $INCLUDEDIRS ; do
2127      if ! test -d $i ; then      if test ! -d $i ; then
 #       INCLUDES="$INCLUDES -I$i"  
 #   else  
2128          echo "Warning: can't find INCLUDEDIRS=\"$i\""          echo "Warning: can't find INCLUDEDIRS=\"$i\""
2129      fi      fi
2130  done  done
2131    
2132    if test ! "x$DIVA" = x ; then
2133        echo "  Creating the pseudo-MPI include directory"
2134        INCLUDES="-I./mpi_headers $INCLUDES"
2135        rm -rf ./mpi_headers
2136        mkdir -p ./mpi_headers
2137    
2138        if test "x$MPIINCLUDEDIR" = x ; then
2139            if test "x$MPIHOME" = x ; then
2140                MPIHOME='/usr'
2141            fi
2142            MPIINCLUDEDIR='$MPIHOME/include'
2143        fi
2144        
2145        if test -r $MPIINCLUDEDIR/mpif.h ; then
2146            for i in $MPI_HEADER_FILES; do
2147                cp -p $MPIINCLUDEDIR/$i ./mpi_headers
2148            done
2149    
2150            perl -i -pe 's/MPI_DISPLACEMENT_CURRENT=-1_8/MPI_DISPLACEMENT_CURRENT=-1/g' mpi_headers/mpif.h
2151        else
2152            echo " We cannot create a copy of mpif.h!"
2153            exit -1
2154        fi
2155    fi
2156    
2157  echo "  Determining the list of source and include files"  echo "  Determining the list of source and include files"
2158  rm -rf .links.tmp  rm -rf .links.tmp
2159  mkdir .links.tmp  mkdir .links.tmp
2160    touch .links.tmp/foo
2161    if test ! -r ".links.tmp/foo" ; then
2162        echo
2163        echo "ERROR : something is wrong with your directory permissions or"
2164        echo "   your user file-creation mask (\"umask\") since creating a"
2165        echo "   sub-dir, touch-ing a file within it, and then reading it is"
2166        echo "   not working.  Please try setting your umask to something"
2167        echo "   sane such as:"
2168        echo
2169        echo "      umask 0002"
2170        echo
2171        echo "   and please verify that you have the proper permissions for"
2172        echo "   creating sub-directories and then reading files created"
2173        echo "   within them."
2174        echo
2175        exit 1
2176    fi
2177    rm -f .links.tmp/foo
2178  echo "# This section creates symbolic links" > srclinks.tmp  echo "# This section creates symbolic links" > srclinks.tmp
2179  echo "" >> srclinks.tmp  echo "" >> srclinks.tmp
2180  echo -n 'SRCFILES = '    > srclist.inc  printf 'SRCFILES = '    > srclist.inc
2181  echo -n 'CSRCFILES = '   > csrclist.inc  printf 'CSRCFILES = '   > csrclist.inc
2182  echo -n 'F90SRCFILES = ' > f90srclist.inc  printf 'F90SRCFILES = ' > f90srclist.inc
2183  echo -n 'HEADERFILES = ' > hlist.inc  printf 'HEADERFILES = ' > hlist.inc
2184  echo -n 'AD_FLOW_FILES = ' > ad_flow_files.inc  printf 'AD_FLOW_FILES = ' > ad_flow_files.inc
2185  alldirs="$SOURCEDIRS $INCLUDEDIRS ."  alldirs="$SOURCEDIRS $INCLUDEDIRS ."
2186  for d in $alldirs ; do  for d in $alldirs ; do
2187      deplist=      deplist=
# Line 1099  for d in $alldirs ; do Line 2190  for d in $alldirs ; do
2190      for sf in $sfiles ; do      for sf in $sfiles ; do
2191          if test ! -r ".links.tmp/$sf" ; then          if test ! -r ".links.tmp/$sf" ; then
2192              if test -f "$d/$sf" ; then              if test -f "$d/$sf" ; then
2193                  extn=`echo $sf | $AWK -F '.' '{print $NF}'`                  ignore_f=f
2194                  touch .links.tmp/$sf                  case $d/$sf in
2195                  deplist="$deplist $sf"                    ./$PACKAGES_DOT_H)
2196                  case $extn in                          ignore_f=t
                     F)  
                         echo    " \\"  >> srclist.inc  
                         echo -n " $sf" >> srclist.inc  
2197                          ;;                          ;;
2198                      F90)                    ./AD_CONFIG.h)
2199                          echo    " \\"  >> f90srclist.inc                          ignore_f=t
                         echo -n " $sf" >> f90srclist.inc  
2200                          ;;                          ;;
2201                      c)                    ./FC_NAMEMANGLE.h)
2202                          echo    " \\"  >> csrclist.inc                          ignore_f=t
                         echo -n " $sf" >> csrclist.inc  
2203                          ;;                          ;;
2204                      h)                    ./BUILD_INFO.h)
2205                          echo    " \\"  >> hlist.inc                          ignore_f=t
                         echo -n " $sf" >> hlist.inc  
2206                          ;;                          ;;
2207                      flow)                    ./EMBEDDED_FILES.h)
2208                          echo    " \\"  >> ad_flow_files.inc                          ignore_f=t
                         echo -n " $sf" >> ad_flow_files.inc  
2209                          ;;                          ;;
2210                  esac                    *)
2211                            #  For the local directory *ONLY*,
2212                            #  ignore all soft-links
2213                            if test "x$HAVE_TEST_L" = xt -a "x$d" = x. -a -L $sf ; then
2214                                ignore_f=t
2215                            else
2216                                touch .links.tmp/$sf
2217                                deplist="$deplist $sf"
2218                            fi
2219                            ;;
2220                    esac
2221                    if test "x$ignore_f" = xf ; then
2222                        extn=`echo $sf | $AWK -F. '{print $NF}'`
2223                        case $extn in
2224                            F)
2225                                echo    " \\"  >> srclist.inc
2226                                printf " $sf" >> srclist.inc
2227                                ;;
2228                            F90)
2229                                echo    " \\"  >> f90srclist.inc
2230                                printf " $sf" >> f90srclist.inc
2231                                ;;
2232                            c)
2233                                echo    " \\"  >> csrclist.inc
2234                                printf " $sf" >> csrclist.inc
2235                                ;;
2236                            h)
2237                                echo    " \\"  >> hlist.inc
2238                                printf " $sf" >> hlist.inc
2239                                ;;
2240                            flow)
2241                                echo    " \\"  >> ad_flow_files.inc
2242                                printf " $sf" >> ad_flow_files.inc
2243                                ;;
2244                        esac
2245                    fi
2246              fi              fi
2247          fi          fi
2248      done      done
# Line 1141  echo "" >> f90srclist.inc Line 2260  echo "" >> f90srclist.inc
2260  echo "" >> hlist.inc  echo "" >> hlist.inc
2261  echo "" >> ad_flow_files.inc  echo "" >> ad_flow_files.inc
2262    
2263  if test -e $MAKEFILE ; then  if test -f $MAKEFILE ; then
2264      mv -f $MAKEFILE "$MAKEFILE.bak"      mv -f $MAKEFILE "$MAKEFILE.bak"
2265  fi  fi
2266  echo "  Writing makefile: $MAKEFILE"  echo "  Writing makefile: $MAKEFILE"
# Line 1150  echo "#    $MACHINE" >> $MAKEFILE Line 2269  echo "#    $MACHINE" >> $MAKEFILE
2269  echo "# This makefile was generated automatically on" >> $MAKEFILE  echo "# This makefile was generated automatically on" >> $MAKEFILE
2270  echo "#    $THISDATE" >> $MAKEFILE  echo "#    $THISDATE" >> $MAKEFILE
2271  echo "# by the command:" >> $MAKEFILE  echo "# by the command:" >> $MAKEFILE
2272  echo "#    $0 $@" >> $MAKEFILE  echo "#    $0 $G2ARGS" >> $MAKEFILE
2273  echo "# executed by:" >> $MAKEFILE  echo "# executed by:" >> $MAKEFILE
2274  echo "#    $USER@${THISHOSTNAME}:${THISCWD}" >> $MAKEFILE  echo "#    ${THISUSER}@${THISHOST}:${THISCWD}" >> $MAKEFILE
2275    
2276  EXE_AD=$EXECUTABLE"_ad"  EXE_AD=$EXECUTABLE"_ad"
2277  EXE_FTL=$EXECUTABLE"_ftl"  EXE_FTL=$EXECUTABLE"_ftl"
2278  EXE_SVD=$EXECUTABLE"_svd"  EXE_SVD=$EXECUTABLE"_svd"
2279    
2280  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
2281    #
2282    # OPTFILE="$OPTFILE"
2283  #  #
2284  # BUILDDIR     : Directory where object files are written  # BUILDDIR     : Directory where object files are written
2285  # SOURCEDIRS   : Directories containing the source (.F) files  # SOURCEDIRS   : Directories containing the source (.F) files
# Line 1192  EXE_AD      = ${EXE_AD} Line 2313  EXE_AD      = ${EXE_AD}
2313  EXE_FTL     = ${EXE_FTL}  EXE_FTL     = ${EXE_FTL}
2314  EXE_SVD     = ${EXE_SVD}  EXE_SVD     = ${EXE_SVD}
2315    
2316    ENABLED_PACKAGES = ${ENABLED_PACKAGES}
2317    DISABLED_PACKAGES = ${DISABLED_PACKAGES}
2318    
2319    # These files are created by Makefile
2320    SPECIAL_FILES = ${PACKAGES_DOT_H} AD_CONFIG.h FC_NAMEMANGLE.h BUILD_INFO.h
2321  EOF  EOF
2322    
2323  #  Note: figure out some way to add Hyades JAM libraries here  if test "x$EMBED_SRC" = xt ; then
2324        echo "EMBEDDED_FILES = EMBEDDED_FILES.h" >>$MAKEFILE
2325    else
2326        echo "EMBEDDED_FILES = " >>$MAKEFILE
2327    fi
2328    
2329    #  Note: figure out some way to add Hyades JAM libraries here
2330  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
2331  # Unix ln (link)  # Unix ln (link)
2332  LN = ${LN}  LN = ${LN}
# Line 1209  KPP = ${KPP} Line 2340  KPP = ${KPP}
2340  FC = ${FC}  FC = ${FC}
2341  # Fortran compiler  # Fortran compiler
2342  F90C = ${F90C}  F90C = ${F90C}
2343    # C compiler
2344    CC = ${CC}
2345  # Link editor  # Link editor
2346  LINK = ${LINK}  LINK = ${LINK} ${LDADD}
2347    
2348  # Defines for CPP  # Defines for CPP
2349  DEFINES = ${DEFINES}  DEFINES = ${DEFINES}
# Line 1231  CFLAGS = ${CFLAGS} Line 2364  CFLAGS = ${CFLAGS}
2364  NOOPTFILES = ${NOOPTFILES}  NOOPTFILES = ${NOOPTFILES}
2365  NOOPTFLAGS = ${NOOPTFLAGS}  NOOPTFLAGS = ${NOOPTFLAGS}
2366  # Flags and libraries needed for linking  # Flags and libraries needed for linking
2367  LIBS = ${LIBS} \$(XLIBS)  LIBS = ${LIBS}
2368  # Name of the Mekfile  # Name of the Mekfile
2369  MAKEFILE=${MAKEFILE}  MAKEFILE=${MAKEFILE}
2370    
# Line 1242  cat csrclist.inc      >> $MAKEFILE Line 2375  cat csrclist.inc      >> $MAKEFILE
2375  cat f90srclist.inc    >> $MAKEFILE  cat f90srclist.inc    >> $MAKEFILE
2376  cat hlist.inc         >> $MAKEFILE  cat hlist.inc         >> $MAKEFILE
2377  cat ad_flow_files.inc >> $MAKEFILE  cat ad_flow_files.inc >> $MAKEFILE
2378  echo               >> $MAKEFILE  echo >> $MAKEFILE
2379  echo 'F77FILES =  $(SRCFILES:.F=.f)'                                           >> $MAKEFILE  echo 'F77FILES =  $(SRCFILES:.F=.'$FS')'      >> $MAKEFILE
2380  echo 'F90FILES =  $(F90SRCFILES:.F90=.f90)'                                    >> $MAKEFILE  echo 'F90FILES =  $(F90SRCFILES:.F90=.'$FS90')' >> $MAKEFILE
2381  echo 'OBJFILES =  $(SRCFILES:.F=.o) $(CSRCFILES:.c=.o) $(F90SRCFILES:.F90=.o)' >> $MAKEFILE  echo 'OBJFILES =  $(SRCFILES:.F=.o) $(CSRCFILES:.c=.o) $(F90SRCFILES:.F90=.o)' >> $MAKEFILE
2382    echo >> $MAKEFILE
2383    echo '.SUFFIXES:' >> $MAKEFILE
2384    echo '.SUFFIXES: .o .'$FS' .p .F .c .'$FS90' .F90' >> $MAKEFILE
2385  rm -f srclist.inc csrclist.inc hlist.inc flist.tmp clist.tmp f90srclist.inc  rm -f srclist.inc csrclist.inc hlist.inc flist.tmp clist.tmp f90srclist.inc
2386  rm -f ad_flow_files.inc  rm -f ad_flow_files.inc
2387    
2388  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
2389    
 .SUFFIXES:  
 .SUFFIXES: .o .f .p .F .c .F90 .f90  
   
2390  all: \$(EXECUTABLE)  all: \$(EXECUTABLE)
2391  \$(EXECUTABLE): \$(OBJFILES)  \$(EXECUTABLE): \$(SPECIAL_FILES) \$(SRCFILES) \$(CSRCFILES) \$(HEADERFILES) \$(F90SRCFILES) \$(OBJFILES) \$(EMBEDDED_FILES)
2392            @echo Creating \$@ ...
2393          \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) \$(LIBS)          \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) \$(LIBS)
2394  depend:  depend:
2395          @make links          @make links
2396          \$(MAKEDEPEND) -o .f \$(DEFINES) \$(INCLUDES) \$(SRCFILES)          \$(MAKEDEPEND) -o .$FS \$(DEFINES) \$(INCLUDES) \$(SRCFILES)
2397          ${TOOLSDIR}/f90mkdepend >> \$(MAKEFILE)          \$(TOOLSDIR)/f90mkdepend >> \$(MAKEFILE)
2398            -rm -f makedepend.out
2399    
2400    lib: libmitgcmuv.a
2401    
2402  links: \$(SRCFILES) \$(CSRCFILES) \$(HEADERFILES) \$(F90SRCFILES)  libmitgcmuv.a: \$(OBJFILES)
2403            ar rcv libmitgcmuv.a \$(OBJFILES)
2404    
2405    links: \$(SRCFILES) \$(CSRCFILES) \$(HEADERFILES) \$(F90SRCFILES) \$(SPECIAL_FILES)
2406    
2407  small_f: \$(F77FILES) \$(F90FILES)  small_f: \$(F77FILES) \$(F90FILES)
2408    
# Line 1272  output.txt: \$(EXECUTABLE) Line 2411  output.txt: \$(EXECUTABLE)
2411          @\$(EXECUTABLE) > \$@          @\$(EXECUTABLE) > \$@
2412    
2413  clean:  clean:
2414          -cat AD_CONFIG.template > AD_CONFIG.h          -rm -rf *.o *.$FS *.p *.$FS90 *.mod ${RMFILES} work.{pc,pcl} *.template
         -rm -rf *.o *.f *.p *.f90 *.mod ${RMFILES} work.{pc,pcl}  
2415  Clean:  Clean:
2416          @make clean          @make clean
2417          @make cleanlinks          @make cleanlinks
2418          -rm -f Makefile.bak genmake_state genmake_*optfile make.log          -rm -f \$(SPECIAL_FILES)
2419            -rm -f genmake_state genmake_*optfile genmake_warnings make.log run.log *.bak
2420  CLEAN:  CLEAN:
2421          @make Clean          @make Clean
2422          -find \$(EXEDIR) -name "*.meta" -exec rm {} \;          -find \$(EXEDIR) -name "*.meta" -exec rm {} \;
2423          -find \$(EXEDIR) -name "*.data" -exec rm {} \;          -find \$(EXEDIR) -name "*.data" -exec rm {} \;
2424          -find \$(EXEDIR) -name "fort.*" -exec rm {} \;          -find \$(EXEDIR) -name "fort.*" -exec rm {} \;
2425          -rm -f \$(EXECUTABLE) output.txt          -rm -f \$(EXECUTABLE) *.txt STD* *diagnostics.log datetime
2426            -rm -rf mnc_test_*
2427    
2428  #eh3 Makefile: makefile  #eh3 Makefile: makefile
2429  makefile:  makefile:
2430          ${0} $@          $THIS_SCRIPT $G2ARGS
2431  cleanlinks:  cleanlinks:
2432          -find . -type l -exec rm {} \;          -find . -type l -exec rm {} \;
2433    
2434  # The normal chain of rules is (  .F - .f - .o  )  # Special targets (SPECIAL_FILES) which are create by make
2435  .F.f:  ${PACKAGES_DOT_H}:
2436            @echo Creating \$@ ...
2437            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bPACKAGES_CONFIG_H "Disabled packages:" \$(DISABLED_PACKAGES) " " "Enabled packages:" \$(ENABLED_PACKAGES) > \$@
2438    AD_CONFIG.h:
2439            @echo Creating \$@ ...
2440            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > \$@
2441    FC_NAMEMANGLE.h:
2442            @echo Creating \$@ ...
2443            echo "$FC_NAMEMANGLE" > \$@
2444    
2445    BUILD_INFO.h:
2446            @echo Creating \$@ ...
2447    EOF
2448    
2449    test ! "x$THISVER" = x  && echo "       -echo \"#define THISVER '$THISVER'\" > \$@"   >> $MAKEFILE
2450    test ! "x$THISUSER" = x && echo "       -echo \"#define THISUSER '$THISUSER'\" >> \$@" >> $MAKEFILE
2451    test ! "x$THISDATE" = x && echo "       -echo \"#define THISDATE '$THISDATE'\" >> \$@" >> $MAKEFILE
2452    test ! "x$THISHOST" = x && echo "       -echo \"#define THISHOST '$THISHOST'\" >> \$@" >> $MAKEFILE
2453    
2454    if test "x$EMBED_SRC" = xt ; then
2455        cat >>$MAKEFILE <<EOF
2456    
2457    decode_files.o : EMBEDDED_FILES.h
2458    
2459    ##  \$(F77FILES)
2460    all_fF.tar.gz : \$(SPECIAL_FILES) \$(SRCFILES) \$(CSRCFILES) \$(HEADERFILES) \$(F90SRCFILES) \$(F77FILES) Makefile
2461            @echo Creating \$@ ...
2462            -tar -hcf all_fF.tar \$(SPECIAL_FILES) \$(SRCFILES) \$(CSRCFILES) \$(HEADERFILES) \$(F90SRCFILES) \$(F77FILES) Makefile
2463            -rm -f all_fF.tar.gz
2464            -gzip all_fF.tar
2465    
2466    EMBEDDED_FILES.h : all_fF.tar.gz
2467            @echo Creating \$@ ...
2468            -\${ROOTDIR}/tools/embed_encode/encode_files EMBEDDED_FILES.h all_fF.tar.gz
2469    
2470    EOF
2471    fi
2472    
2473    cat >>$MAKEFILE <<EOF
2474    
2475    # The normal chain of rules is (  .F - .$FS - .o  )
2476    
2477    ## This nullifies any default implicit rules concerning these two file types:
2478    ## %.o : %.F
2479    
2480    .F.$FS:
2481          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@
2482  .f.o:  .$FS.o:
2483          \$(FC) \$(FFLAGS) \$(FOPTIM) -c \$<          \$(FC) \$(FFLAGS) \$(FOPTIM) -c \$<
2484  .F90.f90:  .F90.$FS90:
2485          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@
2486  .f90.o:  .$FS90.o:
2487          \$(F90C) \$(F90FLAGS) \$(F90OPTIM) -c \$<          \$(F90C) \$(F90FLAGS) \$(F90OPTIM) -c \$<
2488  .c.o:  .c.o:
2489          \$(CC) \$(CFLAGS) -c \$<          \$(CC) \$(CFLAGS) \$(DEFINES) \$(INCLUDES) -c \$<
2490    
2491  # Special exceptions that use the ( .F - .p - .f - .o ) rule-chain  # Special exceptions that use the ( .F - .p - .$FS - .o ) rule-chain
2492  .F.p:  .F.p:
2493          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@
2494  .p.f:  .p.$FS:
2495          \$(KPP) \$(KFLAGS1)\$@ \$(KFLAGS2) \$<          \$(KPP) \$(KFLAGS1)\$@ \$(KFLAGS2) \$<
2496    
2497  #=========================================  #=========================================
# Line 1333  done Line 2518  done
2518    
2519  echo "  Add the source list for AD code generation"  echo "  Add the source list for AD code generation"
2520  echo >> $MAKEFILE  echo >> $MAKEFILE
2521  echo -n "AD_FILES = " >> $MAKEFILE  printf "AD_FILES = " >> $MAKEFILE
2522  AD_FILES=`cat ad_files`  AD_FILES=`cat ad_files`
2523  for i in $AD_FILES ; do  for i in $AD_FILES ; do
2524      echo    " \\" >> $MAKEFILE      echo    " \\" >> $MAKEFILE
2525      echo -n " $i" >> $MAKEFILE      printf " $i" >> $MAKEFILE
2526  done  done
2527  echo >> $MAKEFILE  echo >> $MAKEFILE
2528  rm -f ad_files  rm -f ad_files
# Line 1346  cat >>$MAKEFILE <<EOF Line 2531  cat >>$MAKEFILE <<EOF
2531    
2532  # ... AD ...  # ... AD ...
2533  adall: ad_taf  adall: ad_taf
2534  adtaf: ad_taf_output.f  adtaf: ad_taf_output.$FS
2535  adtamc: ad_tamc_output.f  adtamc: ad_tamc_output.$FS
2536    
2537  ad_input_code.f: \$(AD_FILES) \$(HEADERFILES)  ad_input_code.$FS: \$(AD_FILES) \$(HEADERFILES)
2538            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -DALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ad_config.template
2539          cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h          cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
2540            -rm -f ad_config.template
2541          @make \$(F77FILES)          @make \$(F77FILES)
2542          @make \$(AD_FLOW_FILES)          @make \$(AD_FLOW_FILES)
2543          cat \$(AD_FLOW_FILES) \$(AD_FILES) > ad_input_code.f          cat \$(AD_FLOW_FILES) \$(AD_FILES) > ad_input_code.$FS
2544    
2545  ad_taf_output.f: ad_input_code.f  ad_taf_output.$FS: ad_input_code.$FS
2546          \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.f          \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.$FS
2547          cat ad_input_code_ad.f | sed -f adjoint_sed > ad_taf_output.f          cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.$FS
2548    
2549    adtafonly:
2550            \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.$FS
2551            cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.$FS
2552    
2553  ad_taf: ad_taf_output.o \$(OBJFILES)  ad_taf: ad_taf_output.o \$(OBJFILES)
2554          \$(LINK) -o ${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_taf_output.o \$(LIBS)          \$(LINK) -o ${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_taf_output.o \$(LIBS)
2555    
2556  ad_tamc_output.f: ad_input_code.f  ad_tamc_output.$FS: ad_input_code.$FS
2557          \$(TAMC) \$(AD_TAMC_FLAGS) \$(TAMC_EXTRA) ad_input_code.f          \$(TAMC) \$(AD_TAMC_FLAGS) \$(TAMC_EXTRA) ad_input_code.$FS
2558          cat ad_input_code_ad.f | sed -f adjoint_sed > ad_tamc_output.f          cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_tamc_output.$FS
2559    
2560  ad_tamc: ad_tamc_output.o \$(OBJFILES)  ad_tamc: ad_tamc_output.o \$(OBJFILES)
2561          \$(LINK) -o ${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_tamc_output.o \$(LIBS)          \$(LINK) -o ${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_tamc_output.o \$(LIBS)
2562    
2563    adonlyfwd:
2564            patch < \$(TOOLSDIR)/ad_taf_output.f.onlyfwd.diff
2565    
2566    adtrick:
2567            patch < \$(TOOLSDIR)/ad_taf_output.f.adtrick.diff
2568    
2569  # ... FTL ...  # ... FTL ...
2570  ftlall: ftl_taf  ftlall: ftl_taf
2571  ftltaf: ftl_taf_output.f  ftltaf: ftl_taf_output.$FS
2572  ftltamc: ftl_tamc_output.f  ftltamc: ftl_tamc_output.$FS
2573    
2574  ftl_input_code.f: \$(AD_FILES) \$(HEADERFILES)  ftl_input_code.$FS: \$(AD_FILES) \$(HEADERFILES)
2575            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ftl_config.template
2576          cmp ftl_config.template AD_CONFIG.h || cat ftl_config.template > AD_CONFIG.h          cmp ftl_config.template AD_CONFIG.h || cat ftl_config.template > AD_CONFIG.h
2577            -rm -f ftl_config.template
2578          @make \$(F77FILES)          @make \$(F77FILES)
2579          @make \$(AD_FLOW_FILES)          @make \$(AD_FLOW_FILES)
2580          cat \$(AD_FLOW_FILES) \$(AD_FILES) > ftl_input_code.f          cat \$(AD_FLOW_FILES) \$(AD_FILES) > ftl_input_code.$FS
2581    
2582  ftl_taf_output.f: ftl_input_code.f  ftl_taf_output.$FS: ftl_input_code.$FS
2583          \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.f          \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.$FS
2584          cat ftl_input_code_ftl.f | sed -f adjoint_sed > ftl_taf_output.f          cat ftl_input_code_ftl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.$FS
2585    
2586    ftltafonly:
2587            \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.$FS
2588            cat ftl_input_code_ftl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.$FS
2589    
2590  ftl_taf: ftl_taf_output.o \$(OBJFILES)  ftl_taf: ftl_taf_output.o \$(OBJFILES)
2591          \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_taf_output.o \$(LIBS)          \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_taf_output.o \$(LIBS)
2592    
2593  ftl_tamc_output.f: ftl_input_code.f  ftl_tamc_output.$FS: ftl_input_code.$FS
2594          \$(TAMC) \$(FTL_TAMC_FLAGS) \$(TAMC_EXTRA) ftl_input_code.f          \$(TAMC) \$(FTL_TAMC_FLAGS) \$(TAMC_EXTRA) ftl_input_code.$FS
2595          cat ftl_input_code_ftl.f | sed -f adjoint_sed > ftl_tamc_output.f          cat ftl_input_code_ftl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_tamc_output.$FS
2596    
2597  ftl_tamc: ftl_tamc_output.o \$(OBJFILES)  ftl_tamc: ftl_tamc_output.o \$(OBJFILES)
2598          \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_tamc_output.o \$(LIBS)          \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_tamc_output.o \$(LIBS)
2599    
2600    
2601  # ... SVD ...  # ... SVD ...
2602  svd: svd_taf  svdtaf: ad_taf_output.$FS ftl_taf_output.$FS
2603  svd_taf_f: svd_taf_output.f          @echo "--->>> Only ran TAF to generate SVD code!    <<<---"
2604            @echo "--->>> Do make svdall afterwards to compile. <<<---"
2605  svd_input_code.f: \$(SRCFILES)  svdall: svd_touch svd_taf
2606          cmp svd_config.template AD_CONFIG.h || cat svd_config.template > AD_CONFIG.h  
2607          @make \$(F77FILES)  svd_taf: \$(OBJFILES)
2608          @make \$(AD_FLOW_FILES)          \$(LINK) -o mitgcmuv_svd \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_taf_output.o ftl_taf_output.o \$(LIBS)
2609          cat \$(AD_FLOW_FILES) \$(AD_FILES) > svd_input_code.f  
2610            @echo "--->>> Only COMPILE svd code! <<<---"
2611  svd_taf_output.f: svd_input_code.f          @echo "--->>> Assumes you previously <<<---"
2612          \$(TAF) \$(SVD_TAF_FLAGS) \$(TAF_EXTRA) svd_input_code.f          @echo "--->>> did make svdtaf        <<<---"
2613          cat svd_input_code_ad.f | sed -f adjoint_sed > svd_taf_output.f  
2614    svd_touch:
2615  svd_taf: svd_taf_output.o \$(OBJFILES)          @echo "--->>> Only COMPILE svd code! <<<---"
2616          \$(LINK) -o ${EXE_SVD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) svd_taf_output.o \$(LIBS)          @echo "--->>> Assumes you previously <<<---"
2617            @echo "--->>> did make svdtaf        <<<---"
2618            touch ad_taf_output.$FS ftl_taf_output.$FS
2619            \$(FC) \$(FFLAGS) \$(FOPTIM) -c ad_taf_output.$FS
2620            \$(FC) \$(FFLAGS) \$(FOPTIM) -c ftl_taf_output.$FS
2621            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ftl_config.template
2622            cmp ftl_config.template AD_CONFIG.h || cat ftl_config.template > AD_CONFIG.h
2623            -rm -f ftl_config.template
2624    
2625  #=========================================  #=========================================
2626    
# Line 1429  for i in $KPPFILES ; do Line 2637  for i in $KPPFILES ; do
2637      if test "x$RETVAL" != x0 ; then      if test "x$RETVAL" != x0 ; then
2638          echo "Error: unable to add file \"$i\" to the exceptions list"          echo "Error: unable to add file \"$i\" to the exceptions list"
2639      fi      fi
2640      echo "$base.f: $base.p" >> $MAKEFILE      echo "$base.$FS: $base.p" >> $MAKEFILE
2641  done  done
2642    
2643  echo "  Making list of NOOPTFILES"  echo "  Making list of NOOPTFILES"
# Line 1439  for i in $NOOPTFILES ; do Line 2647  for i in $NOOPTFILES ; do
2647      if test "x$RETVAL" != x0 ; then      if test "x$RETVAL" != x0 ; then
2648          echo "Error: unable to add file \"$i\" to the exceptions list"          echo "Error: unable to add file \"$i\" to the exceptions list"
2649      fi      fi
2650      echo "$base.o: $base.f" >> $MAKEFILE      echo "$base.o: $base.$FS" >> $MAKEFILE
2651      printf "\t\$(FC) \$(FFLAGS) \$(NOOPTFLAGS) -c \$<\n" >> $MAKEFILE      printf "\t\$(FC) \$(FFLAGS) \$(NOOPTFLAGS) -c \$<\n" >> $MAKEFILE
2652  done  done
2653    
# Line 1452  printf "\n\n# DO NOT DELETE\n" >> $MAKEF Line 2660  printf "\n\n# DO NOT DELETE\n" >> $MAKEF
2660    
2661  printf "\n===  Done  ===\n"  printf "\n===  Done  ===\n"
2662    
2663  #  Write the "template" files for the adjoint builds  # Create special header files
2664  cat >AD_CONFIG.template <<EOF  $BASH $TOOLSDIR/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bPACKAGES_CONFIG_H "Disabled packages:" $DISABLED_PACKAGES " " "Enabled packages:" $ENABLED_PACKAGES > $PACKAGES_DOT_H".tmp"
2665  C  WARNING: This file is automatically generated by genmake2 and  if test ! -f $PACKAGES_DOT_H ; then
2666  C    used by the Makefile rules.  Please DO NOT EDIT this file      mv -f $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H
2667  C    unless you are CERTAIN that you know what you are doing.  else
2668        cmp $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H > /dev/null 2>&1
2669  #undef ALLOW_ADJOINT_RUN      RETVAL=$?
2670  #undef ALLOW_TANGENTLINEAR_RUN      if test "x$RETVAL" = x0 ; then
2671  #undef ALLOW_ECCO_OPTIMIZATION          rm -f $PACKAGES_DOT_H".tmp"
2672  EOF      else
2673  cat >ad_config.template <<EOF          mv -f $PACKAGES_DOT_H $PACKAGES_DOT_H".bak"
2674  C  WARNING: This file is automatically generated by genmake2 and          mv -f $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H
2675  C    used by the Makefile rules.  Please DO NOT EDIT this file      fi
2676  C    unless you are CERTAIN that you know what you are doing.  fi
2677    if test ! -f AD_CONFIG.h ; then
2678  #define ALLOW_ADJOINT_RUN      $BASH $TOOLSDIR/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > AD_CONFIG.h
2679  #undef ALLOW_TANGENTLINEAR_RUN  fi
 #undef ALLOW_ECCO_OPTIMIZATION  
 EOF  
 cat >ftl_config.template <<EOF  
 C  WARNING: This file is automatically generated by genmake2 and  
 C    used by the Makefile rules.  Please DO NOT EDIT this file  
 C    unless you are CERTAIN that you know what you are doing.  
   
 #undef ALLOW_ADJOINT_RUN  
 #define ALLOW_TANGENTLINEAR_RUN  
 #undef ALLOW_ECCO_OPTIMIZATION  
 EOF  
 cat >svd_config.template <<EOF  
 C  WARNING: This file is automatically generated by genmake2 and  
 C    used by the Makefile rules.  Please DO NOT EDIT this file  
 C    unless you are CERTAIN that you know what you are doing.  
   
 #undef ALLOW_ADJOINT_RUN  
 #undef ALLOW_TANGENTLINEAR_RUN  
 #undef ALLOW_ECCO_OPTIMIZATION  
 EOF  
 cp AD_CONFIG.template AD_CONFIG.h  
2680    
2681    
2682  #  Write the "state" for future records  #  Write the "state" for future records
2683  if test "x$DUMPSTATE" != xf ; then  if test "x$DUMPSTATE" != xf ; then
2684      echo -n "" > genmake_state      printf "" > genmake_state
2685      for i in $gm_state ; do      for i in $gm_state ; do
2686          t1="t2=\$$i"          t1="t2=\$$i"
2687          eval $t1          eval $t1

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