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revision 1.36 by edhill, Fri Nov 14 02:48:18 2003 UTC revision 1.110 by edhill, Wed Oct 27 18:25:05 2004 UTC
# Line 1  Line 1 
1  #!/bin/sh  #! /usr/bin/env bash
2  #  #
3  # $Header$  # $Header$
4  #  #
# Line 13  Line 13 
13  test_for_package_in_cpp_options() {  test_for_package_in_cpp_options() {
14      cpp_options=$1      cpp_options=$1
15      pkg=$2      pkg=$2
16      grep -i "#define.*ALLOW_$pkg" $cpp_options > /dev/null 2>&1      test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_$pkg" || exit 99
17      RETVAL=$?      test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_$pkg" || exit 99
18      if test "x${RETVAL}" = x0 ; then      test_for_string_in_file $cpp_options "^[ ]*#define.*DISABLE_$pkg" || exit 99
19          echo "Error: In $cpp_options there is an illegal line: #define ALLOW_$pkg"      test_for_string_in_file $cpp_options "^[ ]*#undef.*DISABLE_$pkg" || exit 99
20          exit 99  }
21      fi  
22      grep -i "#undef.*ALLOW_$pkg" $cpp_options > /dev/null 2>&1  # Search for particular CPP #cmds associated with MPI
23      RETVAL=$?  # usage: test_for_mpi_in_cpp_eeoptions CPP_file
24      if test "x${RETVAL}" = x0 ; then  test_for_mpi_in_cpp_eeoptions() {
25          echo "Error: In $cpp_options there is an illegal line: #undef ALLOW_$pkg"      cpp_options=$1
26          exit 99      test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_USE_MPI" || exit 99
27      fi      test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_USE_MPI" || exit 99
28      grep -i "#define.*DISABLE_$pkg" $cpp_options > /dev/null 2>&1      test_for_string_in_file $cpp_options "^[ ]*#define.*ALWAYS_USE_MPI" || exit 99
29        test_for_string_in_file $cpp_options "^[ ]*#undef.*ALWAYS_USE_MPI" || exit 99
30    }
31    
32    # Search for particular string in a file. Return 1 if detected, 0 if not
33    # usage: test_for_string_in_file file string
34    test_for_string_in_file() {
35        file=$1
36        strng=$2
37        grep -i "$strng" $file > /dev/null 2>&1
38      RETVAL=$?      RETVAL=$?
39      if test "x${RETVAL}" = x0 ; then      if test "x${RETVAL}" = x0 ; then
40          echo "Error: In $cpp_options there is an illegal line: #define DISABLE_$pkg"          printf "Error: In $file there is an illegal line: "
41          exit 99          grep -i "$strng" $file
42            return 1
43      fi      fi
44      grep -i "#undef.*DISABLE_$pkg" $cpp_options > /dev/null 2>&1      return 0
     RETVAL=$?  
     if test "x${RETVAL}" = x0 ; then  
         echo "Error: In $cpp_options there is an illegal line: #undef DISABLE_$pkg"  
         exit 99  
    fi  
45  }  }
46    
47  # Read the $ROOTDIR/pkg/pkg_groups file and expand any references to  # Read the $ROOTDIR/pkg/pkg_groups file and expand any references to
# Line 62  expand_pkg_groups() { Line 67  expand_pkg_groups() {
67          done          done
68          PACKAGES=$new_packages          PACKAGES=$new_packages
69          rm -f ./p[1,2].tmp          rm -f ./p[1,2].tmp
70            return $matched
71      else      else
72          echo "Warning: can't read package groups definition file: $PKG_GROUPS"          echo "Warning: can't read package groups definition file: $PKG_GROUPS"
73      fi      fi
74  }  }
75    
76    #  Check for broken environments (eg. cygwin, MacOSX w/HFS+) that
77    #  cannot distinguish [*.F/*.F90] from [*.f/*.f90] files.
78    check_for_broken_Ff()  {
79        #  Do we have defaults for $FS and/or $FS90 ?
80        tfs=f
81        tfs9=f90
82        if test "x$FS" != x ; then
83            tfs="$FS"
84        fi
85        if test "x$FS90" != x ; then
86            tfs9="$FS90"
87        fi
88    
89        #  First check the ability to create a *.F/.f pair.
90        cat <<EOF >> genmake_hello.F
91          program hello
92          write(*,*) 'hi'
93          stop
94          end
95    EOF
96        cp genmake_hello.F "genmake_hello."$tfs > /dev/null 2>&1
97        RETVAL=$?
98        if test "x$RETVAL" != x0 ; then
99            if test "x$FS" = x ; then
100                FS='for'
101                FS90='fr9'
102                check_for_broken_Ff
103            else
104                cat <<EOF 2>&1
105    ERROR: Your file system cannot distinguish between *.F and *.f files
106      (fails the "cp" test) and this program cannot find a suitable
107      replacement extension.  Please try a different build environment or
108      contact the <MITgcm-support@mitgcm.org> list for help.
109    
110    EOF
111                exit -1
112            fi
113            return
114        fi
115        rm -f genmake_hello.*
116    
117        #  Check the ability of ${MAKE} and ${LN} to use the current set
118        #  of extensions.
119        cat <<EOF >> genmake_hello.F
120          program hello
121          write(*,*) 'hi'
122          stop
123          end
124    EOF
125        test -f Makefile  &&  mv -f Makefile Makefile.bak
126        cat <<EOF >> Makefile
127    .SUFFIXES:
128    .SUFFIXES: .$tfs .F
129    .F.$tfs:
130            $LN \$< \$@
131    EOF
132        $MAKE "genmake_hello."$tfs > /dev/null 2>&1
133        RETVAL=$?
134        if test "x$RETVAL" != x0 -o ! -f "genmake_hello."$tfs ; then
135            if test "x$FS" = x ; then
136                FS='for'
137                FS90='fr9'
138                check_for_broken_Ff
139            else
140                cat <<EOF 2>&1
141    ERROR: Your file system cannot distinguish between *.F and *.f files
142      (fails the "make/ln" test) and this program cannot find a suitable
143      replacement extension.  Please try a different build environment or
144      contact the <MITgcm-support@mitgcm.org> list for help.
145    
146    EOF
147                exit -1
148                return
149            fi
150        fi
151        rm -f genmake_hello.* Makefile
152        test -f Makefile  &&  mv -f Makefile.bak Makefile
153    
154        #  If we make it here, use the extensions
155        FS=$tfs
156        FS90=$tfs9
157        return
158    }
159    
160    
161    look_for_makedepend()  {
162    
163        #  The "original" makedepend is part of the Imake system that is
164        #  most often distributed with XFree86 or with an XFree86 source
165        #  package.  As a result, many machines (eg. generic Linux) do not
166        #  have a system-default "makedepend" available.  For those
167        #  systems, we have two fall-back options:
168        #
169        #    1) a makedepend implementation shipped with the cyrus-imapd
170        #       package:  ftp://ftp.andrew.cmu.edu/pub/cyrus-mail/
171        #
172        #    2) a known-buggy xmakedpend shell script
173        #
174        #  So the choices are, in order:
175        #
176        #    1) use the user-specified program
177        #    2) use a system-wide default
178        #    3) locally build and use the cyrus implementation
179        #    4) fall back to the buggy local xmakedpend script
180        #
181        if test "x${MAKEDEPEND}" = x ; then
182            which makedepend > /dev/null 2>&1
183            RV0=$?
184            cat <<EOF >> genmake_tc.f
185          program test
186          write(*,*) 'test'
187          stop
188          end
189    EOF
190            makedepend genmake_tc.f > /dev/null 2>&1
191            RV1=$?
192            if test "x${RV0}${RV1}" = x00 ; then
193                MAKEDEPEND=makedepend
194            else
195                echo "    a system-default makedepend was not found."
196                
197                #  Try to build the cyrus implementation
198                build_cyrus_makedepend
199                RETVAL=$?
200                if test "x$RETVAL" != x0 ; then
201                    MAKEDEPEND='$(TOOLSDIR)/xmakedepend'
202                fi
203                rm -f ./genmake_cy_md
204            fi
205        else
206            #  echo "MAKEDEPEND=${MAKEDEPEND}"
207            echo "${MAKEDEPEND}" | grep -i cyrus > /dev/null 2>&1
208            RETVAL=$?
209            if test x"$RETVAL" = x0 ; then
210                build_cyrus_makedepend
211            fi
212        fi
213    }
214    
215    
216    build_cyrus_makedepend()  {
217        rm -f ./genmake_cy_md
218        (
219            cd $ROOTDIR/tools/cyrus-imapd-makedepend  \
220                &&  ./configure > /dev/null 2>&1  \
221                &&  make > /dev/null 2>&1
222            if test -x ./makedepend.exe ; then
223                $LN ./makedepend.exe ./makedepend
224            fi
225            ./makedepend ifparser.c > /dev/null 2>&1  \
226                &&  echo "true"
227        ) > ./genmake_cy_md
228        grep true ./genmake_cy_md > /dev/null 2>&1
229        RETVAL=$?
230        rm -f ./genmake_cy_md
231        if test "x$RETVAL" = x0 ; then
232            MAKEDEPEND='$(TOOLSDIR)/cyrus-imapd-makedepend/makedepend'
233            return 0
234        else
235            echo "WARNING: unable to build cyrus-imapd-makedepend"
236            return 1
237        fi
238    }
239    
240  # Guess possible config options for this host  # Guess possible config options for this host
241  find_possible_configs()  {  find_possible_configs()  {
242    
243      tmp1=`uname`"_"`uname -m`      tmp1=`uname`"_"`uname -m`
244      tmp2=`echo $tmp1 | sed -e 'y/ABCDEFGHIJKLMNOPQRSTUVWXYZ/abcdefghijklmnopqrstuvwxyz/'`      tmp2=`echo $tmp1 | sed -e 'y/ABCDEFGHIJKLMNOPQRSTUVWXYZ/abcdefghijklmnopqrstuvwxyz/'`
245      tmp3=`echo $tmp2 | sed -e 's/power macintosh/ppc/'`      tmp3=`echo $tmp2 | sed -e 's/power macintosh/ppc/'`
246      PLATFORM=`echo $tmp3 | sed -e 's/i[3-6]86/ia32/' | sed -e 's/athlon/ia32/'`      tmp1=`echo $tmp3 | sed -e 's|x86_64|amd64|'`
247        tmp2=`echo $tmp1 | sed -e 's/i[3-6]86/ia32/' | sed -e 's/athlon/ia32/'`
248        tmp3=`echo $tmp2 | sed -e 's/cray sv1/craysv1/'`
249        PLATFORM=$tmp3
250        echo $PLATFORM | grep cygwin > /dev/null 2>&1  &&  PLATFORM=cygwin_ia32
251      OFLIST=`(cd $ROOTDIR/tools/build_options; ls | grep "^$PLATFORM")`      OFLIST=`(cd $ROOTDIR/tools/build_options; ls | grep "^$PLATFORM")`
252      echo "  The platform appears to be:  $PLATFORM"      echo "  The platform appears to be:  $PLATFORM"
 #     if test "x$OFLIST" = x ; then  
 #       echo "  No pre-defined options files were found matching this platform"  
 #       echo "  but examples for other platforms can be found in:"  
 #       echo "    $ROOTDIR/tools/build_options"  
 #     else  
 #       echo "  Options files (located in $ROOTDIR/tools/build_options) that"  
 #       echo "  may work with this machine are:"  
 #       for i in $OFLIST ; do  
 #           echo "    $i"  
 #       done  
 #     fi  
253            
254      echo "test" > test      echo "test" > test
255      ln -s ./test link      ln -s ./test link
# Line 104  find_possible_configs()  { Line 267  find_possible_configs()  {
267          CPP="cpp -traditional -P"          CPP="cpp -traditional -P"
268      fi      fi
269    
270      # makedepend is not always available      look_for_makedepend
271      if test "x${MAKEDEPEND}" = x ; then  
272        which makedepend >& /dev/null      #================================================================
273        RETVAL=$?      #  look for possible C compilers
274        if test "x${RETVAL}" = x1 ; then      tmp="$MITGCM_CC $CC gcc c89 cc c99 mpicc"
275           echo "    makedepend was not found. Using xmakedpend instead."      p_CC=
276           MAKEDEPEND='$(TOOLSDIR)/xmakedepend'      for c in $tmp ; do
277        fi          rm -f ./genmake_hello.c  ./genmake_hello
278            cat >> genmake_hello.c << EOF
279    #include <stdio.h>
280    int main(int argc, char **argv) {
281      printf("Hello!\n");
282      return 0;
283    }
284    EOF
285            $c -o genmake_hello genmake_hello.c > /dev/null 2>&1
286            RETVAL=$?
287            if test "x${RETVAL}" = x0 ; then
288                p_CC="$p_CC $c"
289            fi
290        done
291        rm -f ./genmake_hello.c ./genmake_hello
292        if test "x${p_CC}" = x ; then
293            cat 1>&2 <<EOF
294    
295    Error: No C compilers were found in your path.  Please specify one using:
296    
297        1) an "optfile" on (eg. "-optfile=path/to/OPTFILE"),
298        2) the CC or MITGCM_CC environment variables.
299    
300    EOF
301            exit 1
302        else
303            echo "  The possible C compilers found in your path are:"
304            echo "   "$p_CC
305            if test "x$CC" = x ; then
306                CC=`echo $p_CC | $AWK '{print $1}'`
307                echo "  Setting C compiler to: "$CC
308            fi
309      fi      fi
310    
311      # look for possible fortran compilers      #================================================================
312        #  look for possible FORTRAN compilers
313      tmp="$MITGCM_FC $FC efc g77 f77 pgf77 pgf95 ifc f90 f95 mpif77 mpf77 mpxlf95"      tmp="$MITGCM_FC $FC efc g77 f77 pgf77 pgf95 ifc f90 f95 mpif77 mpf77 mpxlf95"
314      p_FC=      p_FC=
315      for c in $tmp ; do      for c in $tmp ; do
# Line 140  Error: No Fortran compilers were found i Line 335  Error: No Fortran compilers were found i
335    
336      1) an "optfile" on (eg. "-optfile=path/to/OPTFILE"),      1) an "optfile" on (eg. "-optfile=path/to/OPTFILE"),
337      2) a command-line option (eg. "-fc NAME"), or      2) a command-line option (eg. "-fc NAME"), or
338      3) the MITGCM_FC environment variable.      3) the FC or MITGCM_FC environment variables.
339    
340  EOF  EOF
341          exit 1          exit 1
# Line 149  EOF Line 344  EOF
344          echo "   "$p_FC          echo "   "$p_FC
345          if test "x$FC" = x ; then          if test "x$FC" = x ; then
346              FC=`echo $p_FC | $AWK '{print $1}'`              FC=`echo $p_FC | $AWK '{print $1}'`
347                echo "  Setting FORTRAN compiler to: "$FC
348          fi          fi
349      fi      fi
350    
351      for i in $p_FC ; do      if test "x$OPTFILE" = x ; then
352          p_OF=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$i          OPTFILE=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$FC
353          if test -r $p_OF ; then          if test ! -r $OPTFILE ; then
354              OPTFILE=$p_OF               echo "  I looked for the file "$OPTFILE" but did not find it"
355              echo "  The options file:  $p_OF"          fi
356              echo "    appears to match so we'll use it."      fi
357              break  #    echo "  The options file:  $p_OF"
358          fi  #    echo "    appears to match so we'll use it."
359      done  #   for i in $p_FC ; do
360    #p_OF=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$i
361    #if test -r $p_OF ; then
362    #    OPTFILE=$p_OF
363    #    echo "  The options file:  $p_OF"
364    #    echo "    appears to match so we'll use it."
365    #    break
366    #fi
367    #   done
368      if test "x$OPTFILE" = x ; then      if test "x$OPTFILE" = x ; then
369          cat 1>&2 <<EOF          cat 1>&2 <<EOF
370    
# Line 219  get_pdepend_list()  { Line 423  get_pdepend_list()  {
423      . ./.pd_tmp      . ./.pd_tmp
424      rm -f ./.pd_tmp      rm -f ./.pd_tmp
425    
426      echo -n "PNAME = "${}      printf "PNAME = "${}
427  }  }
428    
429    
430  #  Explain usage  #  Explain usage
431  usage()  {  usage()  {
432      echo  cat <<EOF
433      echo "Usage: "$0" [OPTIONS]"  
434      echo "  where [OPTIONS] can be:"  Usage: "$0" [OPTIONS]
435      echo    where [OPTIONS] can be:
436      echo "    -help | --help | -h | --h"  
437      echo "    -nooptfile | --nooptfile"      -help | --help | -h | --h
438      echo "      -optfile NAME | --optfile NAME | -of NAME | --of NAME"            Print this help message and exit.
439      echo "      -optfile=NAME | --optfile=NAME | -of=NAME | --of=NAME"  
440      echo "    -pdepend NAME | --pdepend NAME"      -adoptfile NAME | --adoptfile NAME | -adof NAME | --adof NAME
441      echo "      -pdepend=NAME | --pdepend=NAME"        -adoptfile=NAME | --adoptfile=NAME | -adof=NAME | --adof=NAME
442      echo "    -pdefault NAME | --pdefault NAME"            Use "NAME" as the adoptfile.  By default, the file at
443      echo "      -pdefault=NAME | --pdefault=NAME"            "tools/adjoint_options/adjoint_default" will be used.
444      echo "    -make NAME | -m NAME"  
445      echo "      --make=NAME | -m=NAME"      -nooptfile | --nooptfile
446      echo "    -makefile NAME | -mf NAME"        -optfile NAME | --optfile NAME | -of NAME | --of NAME
447      echo "      --makefile=NAME | -mf=NAME"        -optfile=NAME | --optfile=NAME | -of=NAME | --of=NAME
448      echo "    -platform NAME | --platform NAME | -pl NAME | --pl NAME"            Use "NAME" as the optfile.  By default, an attempt will be
449      echo "      -platform=NAME | --platform=NAME | -pl=NAME | --pl=NAME"            made to find an appropriate "standard" optfile in the
450      echo "    -rootdir NAME | --rootdir NAME | -rd NAME | --rd NAME"            tools/build_options/ directory.
451      echo "      -rootdir=NAME | --rootdir=NAME | -rd=NAME | --rd=NAME"  
452      echo "    -mods NAME | --mods NAME | -mo NAME | --mo NAME"      -pdepend NAME | --pdepend NAME
453      echo "      -mods=NAME | --mods=NAME | -mo=NAME | --mo=NAME"        -pdepend=NAME | --pdepend=NAME
454      echo "    -disable NAME | --disable NAME"            Get package dependency information from "NAME".
455      echo "      -disable=NAME | --disable=NAME"  
456      echo "    -enable NAME | --enable NAME"      -pdefault NAME | --pdefault NAME
457      echo "      -enable=NAME | --enable=NAME"        -pdefault=NAME | --pdefault=NAME
458      echo "    -standarddirs NAME | --standarddirs NAME"            Get the default package list from "NAME".
459      echo "      -standarddirs=NAME | --standarddirs=NAME"  
460      echo "    -noopt NAME | --noopt NAME"      -make NAME | -m NAME
461      echo "      -noopt=NAME | --noopt=NAME"        --make=NAME | -m=NAME
462  #    echo "    -cpp NAME | --cpp NAME"            Use "NAME" for the MAKE program. The default is "make" but
463  #    echo "      -cpp=NAME | --cpp=NAME"            many platforms, "gmake" is the preferred choice.
464      echo "    -fortran NAME | --fortran NAME | -fc NAME | --fc NAME"  
465      echo "      -fc=NAME | --fc=NAME"      -makefile NAME | -mf NAME
466      echo "    -[no]ieee | --[no]ieee"        --makefile=NAME | -mf=NAME
467      echo "    -[no]mpi | --[no]mpi"            Call the makefile "NAME".  The default is "Makefile".
468      echo "    -[no]jam | --[no]jam"  
469      echo      -makedepend NAME | -md NAME
470      echo "  and NAME is a string such as:"        --makedepend=NAME | -md=NAME
471      echo            Use "NAME" for the MAKEDEPEND program.
472      echo "    --enable pkg1   --enable 'pkg1 pkg2'   --enable 'pkg1 pkg2 pkg3'"  
473      echo "    -mods=dir1   -mods='dir1'   -mods='dir1 dir2 dir3'"      -rootdir NAME | --rootdir NAME | -rd NAME | --rd NAME
474      echo "    -foptim='-Mvect=cachesize:512000,transform -xtypemap=real:64,double:64,integer:32'"        -rootdir=NAME | --rootdir=NAME | -rd=NAME | --rd=NAME
475      echo            Specify the location of the MITgcm ROOTDIR as "NAME".
476      echo "  which, depending upon your shell, may need to be single-quoted"            By default, genamke will try to find the location by
477      echo "  if it contains spaces, dashes, or other special characters."            looking in parent directories (up to the 5th parent).
478    
479        -mods NAME | --mods NAME | -mo NAME | --mo NAME
480          -mods=NAME | --mods=NAME | -mo=NAME | --mo=NAME
481              Here, "NAME" specifies a list of directories that are
482              used for additional source code.  Files found in the
483              "mods list" are given preference over files of the same
484              name found elsewhere.
485    
486        -disable NAME | --disable NAME
487          -disable=NAME | --disable=NAME
488              Here "NAME" specifies a list of packages that we don't
489              want to use.  If this violates package dependencies,
490              genamke will exit with an error message.
491    
492        -enable NAME | --enable NAME
493          -enable=NAME | --enable=NAME
494              Here "NAME" specifies a list of packages that we wish
495              to specifically enable.  If this violates package
496              dependencies, genamke will exit with an error message.
497    
498        -standarddirs NAME | --standarddirs NAME
499          -standarddirs=NAME | --standarddirs=NAME
500              Here, "NAME" specifies a list of directories to be
501              used as the "standard" code.
502    
503        -fortran NAME | --fortran NAME | -fc NAME | --fc NAME
504          -fc=NAME | --fc=NAME
505              Use "NAME" as the fortran compiler.  By default, genmake
506              will search for a working compiler by trying a list of
507              "usual suspects" such as g77, f77, etc.
508    
509        -cc NAME | --cc NAME | -cc=NAME | --cc=NAME
510              Use "NAME" as the C compiler.  By default, genmake
511              will search for a working compiler by trying a list of
512              "usual suspects" such as gcc, c89, cc, etc.
513    
514        -[no]ieee | --[no]ieee
515              Do or don't use IEEE numerics.  Note that this option
516              *only* works if it is supported by the OPTFILE that
517              is being used.
518    
519        -mpi | --mpi
520              Include MPI header files and link to MPI libraries
521        -mpi=PATH | --mpi=PATH
522              Include MPI header files and link to MPI libraries using MPI_ROOT
523              set to PATH. i.e. Include files from \$PATH/include, link to libraries
524              from \$PATH/lib and use binaries from \$PATH/bin.
525    
526        -bash NAME
527              Explicitly specify the Bourne or BASH shell to use
528    
529      While it is most often a single word, the "NAME" variables specified
530      above can in many cases be a space-delimited string such as:
531    
532        --enable pkg1   --enable 'pkg1 pkg2'   --enable 'pkg1 pkg2 pkg3'
533        -mods=dir1   -mods='dir1'   -mods='dir1 dir2 dir3'
534        -foptim='-Mvect=cachesize:512000,transform -xtypemap=real:64,double:64,integer:32'
535    
536      which, depending upon your shell, may need to be single-quoted.
537    
538      For more detailed genmake documentation, please see:
539    
540        http://mitgcm.org/devel_HOWTO/
541    
542    EOF
543    
544      exit 1      exit 1
545  }  }
546    
547  #  Build a CPP macro to automate calling C routines from FORTRAN  #  Build a CPP macro to automate calling C routines from FORTRAN
548  get_fortran_c_namemangling()  {  get_fortran_c_namemangling()  {
549    
550        #echo "FC_NAMEMANGLE = \"$FC_NAMEMANGLE\""
551        if test ! "x$FC_NAMEMANGLE" = x ; then
552            return 0
553        fi
554    
555      default_nm="#define FC_NAMEMANGLE(X) X ## _"      default_nm="#define FC_NAMEMANGLE(X) X ## _"
556            
557      cat > genmake_test.c <<EOF      cat > genmake_test.c <<EOF
558  void tcall( char * string ) { tsub( string ); }  void tcall( char * string ) { tsub( string ); }
559  EOF  EOF
560      $MAKE genmake_test.o > genmake_test.log 2>&1      $MAKE genmake_test.o >> genmake_warnings 2>&1
561      RETVAL=$?      RETVAL=$?
562      if test "x$RETVAL" != x0 ; then      if test "x$RETVAL" != x0 ; then
         cat genmake_test.log >> genmake_errors  
563          FC_NAMEMANGLE=$default_nm          FC_NAMEMANGLE=$default_nm
564          echo          cat <<EOF>> genmake_errors
565          echo "WARNING: C test compile fails -- please see \"genmake_errors\""  
566          echo "WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'"  WARNING: C test compile fails
567          echo "WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here."  WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
568    WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here
569    EOF
570          return 1          return 1
571      fi      fi
572      c_tcall=`nm genmake_test.o | grep tcall | cut -d ' ' -f 3`      c_tcall=`nm genmake_test.o 2>/dev/null | grep 'T ' | grep tcall | cut -d ' ' -f 3`
573      RETVAL=$?      RETVAL=$?
574      if test "x$RETVAL" != x0 ; then      if test "x$RETVAL" != x0 ; then
575          FC_NAMEMANGLE=$default_nm          FC_NAMEMANGLE=$default_nm
576          echo          cat <<EOF>> genmake_warnings
577          echo "WARNING: The \"nm\" command failed."  
578          echo "WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'"  WARNING: The "nm" command failed.
579          echo "WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here."  WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
580    WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here
581    EOF
582          return 1          return 1
583      fi      fi
584      cat > genmake_tcomp.f <<EOF      cat > genmake_tcomp.f <<EOF
# Line 308  EOF Line 587  EOF
587        call tsub( string )        call tsub( string )
588        end        end
589  EOF  EOF
590      $FC $FFLAGS $DEFINES -c genmake_tcomp.f > genmake_tcomp.log 2>&1      $FC $FFLAGS $DEFINES -c genmake_tcomp.f >> genmake_warnings 2>&1
591      RETVAL=$?      RETVAL=$?
592      if test "x$RETVAL" != x0 ; then      if test "x$RETVAL" != x0 ; then
         cat genmake_tcomp.log >> genmake_errors  
593          FC_NAMEMANGLE=$default_nm          FC_NAMEMANGLE=$default_nm
594          echo          cat <<EOF>> genmake_warnings
595          echo "WARNING: FORTRAN test compile fails -- please see \"genmake_errors\""  
596          echo "WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'"  WARNING: FORTRAN test compile fails -- please see "genmake_errors"
597          echo "WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here."  WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
598    WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here.
599    EOF
600          return 1          return 1
601      fi      fi
602      f_tcall=`nm genmake_tcomp.o | grep tcall | cut -d ' ' -f 3`      f_tcall=`nm genmake_tcomp.o 2>/dev/null | grep 'T ' | grep tcall | cut -d ' ' -f 3`
603      RETVAL=$?      RETVAL=$?
604      if test "x$RETVAL" != x0 ; then      if test "x$RETVAL" != x0 ; then
605          FC_NAMEMANGLE=$default_nm          FC_NAMEMANGLE=$default_nm
606          echo          cat <<EOF>> genmake_warnings
607          echo "WARNING: The \"nm\" command failed."  
608          echo "WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'"  WARNING: The "nm" command failed.
609          echo "WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here."  WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
610    WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here.
611    EOF
612          return 1          return 1
613      fi      fi
614    
# Line 353  EOF Line 635  EOF
635      rm -f genmake_tcomp.* genmake_test.*      rm -f genmake_tcomp.* genmake_test.*
636  }  }
637    
638    
639    check_HAVE_CLOC()  {
640        get_fortran_c_namemangling
641        cat <<EOF > genmake_tc_1.c
642    $FC_NAMEMANGLE
643    #include <stdio.h>
644    #include <stdlib.h>
645    #include <unistd.h>
646    #include <assert.h>
647    #include <sys/time.h>
648    void FC_NAMEMANGLE(cloc) ( double *curtim )
649    {
650     struct timeval tv1;
651     gettimeofday(&tv1 , (void *)NULL );
652     *curtim =  (double)((tv1.tv_usec)+(tv1.tv_sec)*1.E6);
653     *curtim = *curtim/1.E6;
654    }
655    EOF
656        make genmake_tc_1.o >> genmake_tc.log 2>&1
657        RET_C=$?
658        cat <<EOF > genmake_tc_2.f
659          program hello
660          Real*8 wtime
661          external cloc
662          call cloc(wtime)
663          print *," HELLO WORLD", wtime
664          end program hello
665    EOF
666        $FC $FFLAGS -o genmake_tc genmake_tc_2.f genmake_tc_1.o >> genmake_tc.log 2>&1
667        RET_F=$?
668        test -x ./genmake_tc  &&  ./genmake_tc >> genmake_tc.log 2>&1
669        RETVAL=$?
670        if test "x$RETVAL" = x0 ; then
671            HAVE_CLOC=t
672            DEFINES="$DEFINES -DHAVE_CLOC"
673        fi
674        rm -f genmake_tc*
675    }
676    
677    
678    check_HAVE_STAT()  {
679        get_fortran_c_namemangling
680        cat <<EOF > genmake_tc_1.c
681    $FC_NAMEMANGLE
682    #include <stdio.h>
683    #include <stdlib.h>
684    #include <unistd.h>
685    #include <sys/stat.h>
686    #include <sys/types.h>
687    void FC_NAMEMANGLE(tfsize) ( int *nbyte )
688    {
689        char name[512];
690        struct stat astat;
691    
692        name[0] = 'a'; name[1] = '\0';
693        if (! stat(name, &astat))
694            *nbyte = (int)(astat.st_size);
695        else
696            *nbyte = -1;
697    }
698    EOF
699        make genmake_tc_1.o >> genmake_tc.log 2>&1
700        RET_C=$?
701        cat <<EOF > genmake_tc_2.f
702          program hello
703          integer nbyte
704          call tfsize(nbyte)
705          print *," HELLO WORLD", nbyte
706          end program hello
707    EOF
708        $FC $FFLAGS -o genmake_tc genmake_tc_2.f genmake_tc_1.o >> genmake_tc.log 2>&1
709        RET_F=$?
710        test -x ./genmake_tc  &&  ./genmake_tc >> genmake_tc.log 2>&1
711        RETVAL=$?
712        if test "x$RETVAL" = x0 ; then
713            HAVE_STAT=t
714            DEFINES="$DEFINES -DHAVE_STAT"
715        fi
716        rm -f genmake_tc*
717    }
718    
719    
720    check_netcdf_libs()  {
721        echo "" > genmake_tnc.log
722        cat <<EOF > genmake_tnc.for
723          program fgennc
724    #include "netcdf.inc"
725          integer iret, ncid, xid
726          iret = nf_create('genmake_tnc.nc', NF_CLOBBER, ncid)
727          IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret)
728          iret = nf_def_dim(ncid, 'X', 11, xid)
729          IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret)
730          iret = nf_close(ncid)
731          IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret)
732          end
733    EOF
734        #echo "$CPP $DEFINES $INCLUDES genmake_tnc.for > genmake_tnc.f"
735        #echo "$FC $FFLAGS $FOPTIM -c genmake_tnc.f"
736        #echo "$LINK -o genmake_tnc.o $LIBS"
737        $CPP $DEFINES $INCLUDES genmake_tnc.for > genmake_tnc.f 2>/dev/null  \
738            &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.f >> genmake_tnc.log 2>&1  \
739            &&  $LINK -o genmake_tnc genmake_tnc.o $LIBS >> genmake_tnc.log 2>&1
740        RET_COMPILE=$?
741    
742        #EH3  Remove test program execution for machines that either disallow
743        #EH3  execution or cannot support it (eg. cross-compilers)
744        #EH3
745        #EH3 test -x ./genmake_tnc  &&  ./genmake_tnc >> genmake_tnc.log 2>&1
746        #EH3 RETVAL=$?
747        #EH3 if test "x$RET_COMPILE" = x0 -a "x$RETVAL" = x0 ; then
748    
749        if test "x$RET_COMPILE" = x0 ; then
750            HAVE_NETCDF=t
751        else
752            # try again with "-lnetcdf" added to the libs
753            $CPP $DEFINES $INCLUDES genmake_tnc.for > genmake_tnc.f 2>/dev/null  \
754                &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.f >> genmake_tnc.log 2>&1  \
755                &&  $LINK -o genmake_tnc genmake_tnc.o $LIBS -lnetcdf >> genmake_tnc.log 2>&1
756            RET_COMPILE=$?
757            if test "x$RET_COMPILE" = x0 ; then
758                LIBS="$LIBS -lnetcdf"
759                HAVE_NETCDF=t
760            else
761                cat genmake_tnc.log >> genmake_warnings
762            fi
763        fi
764        rm -f genmake_tnc*
765    }
766    
767    
768    
769    ###############################################################################
770    #   Sequential part of script starts here
771    ###############################################################################
772    
773  #  Set defaults here  #  Set defaults here
774  COMMANDL="$0 $@"  COMMANDL="$0 $@"
775    
# Line 361  LN= Line 778  LN=
778  S64=  S64=
779  KPP=  KPP=
780  FC=  FC=
781    #CC=gcc
782    CPP=
783  LINK=  LINK=
 # DEFINES="-DWORDLENGTH=4"  
784  DEFINES=  DEFINES=
785  PACKAGES=  PACKAGES=
786  ENABLE=  ENABLE=
787  DISABLE=  DISABLE=
788  MAKEFILE=  MAKEFILE=
789  MAKEDEPEND=  #MAKEDEPEND=
790  PDEPEND=  PDEPEND=
791  DUMPSTATE=t  DUMPSTATE=t
792  PDEFAULT=  PDEFAULT=
# Line 379  FOPTIM= Line 797  FOPTIM=
797  CFLAGS=  CFLAGS=
798  KFLAGS1=  KFLAGS1=
799  KFLAGS2=  KFLAGS2=
800    #LDADD=
801  LIBS=  LIBS=
802  KPPFILES=  KPPFILES=
803  NOOPTFILES=  NOOPTFILES=
804  NOOPTFLAGS=  NOOPTFLAGS=
805    MPI=
806    MPIPATH=
807    
808  # DEFINES checked by test compilation  # DEFINES checked by test compilation
809  HAVE_SYSTEM=  HAVE_SYSTEM=
810  HAVE_FDATE=  HAVE_FDATE=
811  FC_NAMEMANGLE=  FC_NAMEMANGLE=
812    HAVE_CLOC=
813    HAVE_STAT=
814    HAVE_NETCDF=
815    HAVE_ETIME=
816    
817  MODS=  MODS=
818  TOOLSDIR=  TOOLSDIR=
819  SOURCEDIRS=  SOURCEDIRS=
820  INCLUDEDIRS=  INCLUDEDIRS=
821  STANDARDDIRS=  STANDARDDIRS="USE_THE_DEFAULT"
822    
823    G2ARGS=
824    BASH=
825  PWD=`pwd`  PWD=`pwd`
826  MAKE=make  MAKE=make
827  AWK=awk  AWK=awk
828  THISHOSTNAME=`hostname`  THISHOST=`hostname`
829  THISCWD=`pwd`  THISCWD=`pwd`
830  THISDATE=`date`  THISDATE=`date`
831    THISUSER=`echo $USER`
832    THISVER=
833  MACHINE=`uname -a`  MACHINE=`uname -a`
834  EXECUTABLE=  EXECUTABLE=
835  EXEHOOK=  EXEHOOK=
# Line 410  IEEE= Line 839  IEEE=
839  if test "x$MITGCM_IEEE" != x ; then  if test "x$MITGCM_IEEE" != x ; then
840      IEEE=$MITGCM_IEEE      IEEE=$MITGCM_IEEE
841  fi  fi
842    FS=
843    FS90=
844    
845  AUTODIFF_PKG_USED=f  AUTODIFF_PKG_USED=f
846  AD_OPTFILE=  AD_OPTFILE=
# Line 426  TAMC_EXTRA= Line 857  TAMC_EXTRA=
857    
858    
859  #  The following state can be set directly by command-line switches  #  The following state can be set directly by command-line switches
860  gm_s1="OPTFILE PDEPEND PDEFAULT MAKEFILE PLATFORM ROOTDIR MODS DISABLE ENABLE NOOPT"  gm_s1="OPTFILE PDEPEND PDEFAULT MAKEFILE PLATFORM ROOTDIR MODS DISABLE ENABLE"
861  gm_s2="FC IEEE MPI JAM DUMPSTATE STANDARDDIRS"  gm_s2="FC CPP IEEE MPI JAM DUMPSTATE STANDARDDIRS"
862    
863  #  The following state is not directly set by command-line switches  #  The following state is not directly set by command-line switches
864  gm_s3="LN S64 KPP LINK PACKAGES MAKEDEPEND PDEPEND PDEFAULT INCLUDES FFLAGS FOPTIM "  gm_s3="LN S64 KPP LINK PACKAGES MAKEDEPEND PDEPEND PDEFAULT INCLUDES FFLAGS FOPTIM "
865  gm_s4="CFLAGS KFLAGS1 KFLAGS2 LIBS KPPFILES NOOPTFILES NOOPTFLAGS"  gm_s4="CFLAGS KFLAGS1 KFLAGS2 LIBS KPPFILES NOOPTFILES NOOPTFLAGS"
866  gm_s5="TOOLSDIR SOURCEDIRS INCLUDEDIRS PWD MAKE THISHOSTNAME THISDATE MACHINE"  gm_s5="TOOLSDIR SOURCEDIRS INCLUDEDIRS PWD MAKE THISHOST THISUSER THISDATE THISVER MACHINE"
867  gm_s6="EXECUTABLE EXEHOOK EXEDIR PACKAGES_CONF"  gm_s6="EXECUTABLE EXEHOOK EXEDIR PACKAGES_CONF"
868  gm_s7="HAVE_SYSTEM HAVE_FDATE FC_NAMEMANGLE"  gm_s7="HAVE_SYSTEM HAVE_FDATE FC_NAMEMANGLE HAVE_ETIME"
869    
870  #  The following are all related to adjoint/tangent-linear stuff  #  The following are all related to adjoint/tangent-linear stuff
871  gm_s10="AUTODIFF_PKG_USED AD_OPTFILE TAMC TAF AD_TAMC_FLAGS AD_TAF_FLAGS"  gm_s10="AUTODIFF_PKG_USED AD_OPTFILE TAMC TAF AD_TAMC_FLAGS AD_TAF_FLAGS"
# Line 444  gm_s12="TAF_EXTRA TAMC_EXTRA" Line 875  gm_s12="TAF_EXTRA TAMC_EXTRA"
875  gm_state="COMMANDL $gm_s1 $gm_s2 $gm_s3 $gm_s4 $gm_s5 $gm_s6 $gm_s7"  gm_state="COMMANDL $gm_s1 $gm_s2 $gm_s3 $gm_s4 $gm_s5 $gm_s6 $gm_s7"
876  gm_state="$gm_state $gm_s10 $gm_s11 $gm_s12"  gm_state="$gm_state $gm_s10 $gm_s11 $gm_s12"
877    
878    cat <<EOF
879    
880    GENMAKE :
881    
882    A program for GENerating MAKEfiles for the MITgcm project.  For a
883    quick list of options, use "genmake -h" or for more detail see:
884    
885      http://mitgcm.org/devel_HOWTO/
886    
887    EOF
888    
 echo  
889  echo "===  Processing options files and arguments  ==="  echo "===  Processing options files and arguments  ==="
890  gm_local="genmake_local"  gm_local="genmake_local"
891  for i in . $MODS ; do  for i in . $MODS ; do
# Line 454  for i in . $MODS ; do Line 894  for i in . $MODS ; do
894          break          break
895      fi      fi
896  done  done
897  echo -n "  getting local config information:  "  printf "  getting local config information:  "
898  if test -e $gm_local ; then  if test -f $gm_local ; then
899      echo "using $gm_local"      echo "using $gm_local"
900      . $gm_local      . $gm_local
901      # echo "DISABLE=$DISABLE"      # echo "DISABLE=$DISABLE"
# Line 464  else Line 904  else
904      echo "none found"      echo "none found"
905  fi  fi
906    
907  #  echo "$0::$1:$2:$3:$4:$5:$6:$7:"  #echo "$0::$1:$2:$3:$4:$5:$6:$7:"
908  #OPTIONS=  #OPTIONS=
909  #n=0  #n=0
910  #for i ; do  #for i ; do
# Line 476  fi Line 916  fi
916  #done  #done
917  #parse_options  #parse_options
918  ac_prev=  ac_prev=
919  for ac_option ; do  for ac_option in "$@" ; do
920    
921        G2ARGS="$G2ARGS \"$ac_option\""
922    
923      # If the previous option needs an argument, assign it.      # If the previous option needs an argument, assign it.
924      if test -n "$ac_prev"; then      if test -n "$ac_prev"; then
# Line 499  for ac_option ; do Line 941  for ac_option ; do
941          -optfile=* | --optfile=* | -of=* | --of=*)          -optfile=* | --optfile=* | -of=* | --of=*)
942              OPTFILE=$ac_optarg ;;              OPTFILE=$ac_optarg ;;
943                    
944          -adoptfile | --adoptfile | -ad | --ad)          -adoptfile | --adoptfile | -adof | --adof)
945              ac_prev=AD_OPTFILE ;;              ac_prev=AD_OPTFILE ;;
946          -adoptfile=* | --adoptfile=* | -adof=* | --adof=*)          -adoptfile=* | --adoptfile=* | -adof=* | --adof=*)
947              AD_OPTFILE=$ac_optarg ;;              AD_OPTFILE=$ac_optarg ;;
# Line 519  for ac_option ; do Line 961  for ac_option ; do
961          -make=* | --make=* | -m=* | --m=*)          -make=* | --make=* | -m=* | --m=*)
962              MAKE=$ac_optarg ;;              MAKE=$ac_optarg ;;
963                    
964            -bash | --bash)
965                ac_prev=BASH ;;
966            -bash=* | --bash=*)
967                BASH=$ac_optarg ;;
968            
969            -makedepend | --makedepend | -md | --md)
970                ac_prev=MAKEDEPEND ;;
971            -makedepend=* | --makedepend=* | -md=* | --md=*)
972                MAKEDEPEND=$ac_optarg ;;
973            
974          -makefile | --makefile | -ma | --ma)          -makefile | --makefile | -ma | --ma)
975              ac_prev=MAKEFILE ;;              ac_prev=MAKEFILE ;;
976          -makefile=* | --makefile=* | -ma=* | --ma=*)          -makefile=* | --makefile=* | -ma=* | --ma=*)
977              MAKEFILE=$ac_optarg ;;              MAKEFILE=$ac_optarg ;;
978                    
979          -platform | --platform | -pl | --pl)          -platform | --platform | -pl | --pl | -platform=* | --platform=* | -pl=* | --pl=*)
980              ac_prev=PLATFORM ;;              echo "ERROR: The platform option has been removed.  Please specify"
981          -platform=* | --platform=* | -pl=* | --pl=*)              echo "  the build options using the \"optfile\" mechanism."
982              PLATFORM=$ac_optarg ;;              echo
983                usage
984                ;;
985                    
986          -rootdir | --rootdir | -rd | --rd)          -rootdir | --rootdir | -rd | --rd)
987              ac_prev=ROOTDIR ;;              ac_prev=ROOTDIR ;;
# Line 554  for ac_option ; do Line 1008  for ac_option ; do
1008          -standarddirs=* | --standarddirs=*)          -standarddirs=* | --standarddirs=*)
1009              STANDARDDIRS=$ac_optarg ;;              STANDARDDIRS=$ac_optarg ;;
1010    
         -noopt | --noopt)  
             ac_prev=NOOPT ;;  
         -noopt=* | --noopt=*)  
             NOOPT=$ac_optarg ;;  
           
1011  #           -cpp | --cpp)  #           -cpp | --cpp)
1012  #               ac_prev=cpp ;;  #               ac_prev=cpp ;;
1013  #           -cpp=* | --cpp=*)  #           -cpp=* | --cpp=*)
1014  #               CPP=$ac_optarg ;;  #               CPP=$ac_optarg ;;
1015                        
1016            -cc | --cc)
1017                ac_prev=CC ;;
1018            -cc=* | --cc=*)
1019                CC=$ac_optarg ;;
1020            
1021          -fortran | --fortran | -fc | --fc)          -fortran | --fortran | -fc | --fc)
1022              ac_prev=FC ;;              ac_prev=FC ;;
1023          -fc=* | --fc=*)          -fc=* | --fc=*)
1024              FC=$ac_optarg ;;              FC=$ac_optarg ;;
1025                    
1026            -fs | --fs)
1027                ac_prev=FS ;;
1028            -fs=* | --fs=*)
1029                FS=$ac_optarg ;;
1030            
1031            -fs90 | --fs90)
1032                ac_prev=FS90 ;;
1033            -fs90=* | --fs90=*)
1034                FS90=$ac_optarg ;;
1035            
1036          -ieee | --ieee)          -ieee | --ieee)
1037              IEEE=true ;;              IEEE=true ;;
1038          -noieee | --noieee)          -noieee | --noieee)
1039              IEEE= ;;              IEEE= ;;
1040            
1041          -mpi | --mpi)          -mpi | --mpi)
1042              MPI=true ;;              MPI=true ;;
1043          -nompi | --nompi)          -mpi=* | --mpi=*)
1044              MPI= ;;              MPIPATH=$ac_optarg
1045                MPI=true ;;
1046                    
1047          -jam | --jam)  #       -jam | --jam)
1048              JAM=1 ;;  #           JAM=1 ;;
1049          -nojam | --nojam)  #       -nojam | --nojam)
1050              JAM=0 ;;  #           JAM=0 ;;
1051                    
1052          -ds | --ds)          -ds | --ds)
1053              DUMPSTATE=t ;;              DUMPSTATE=t ;;
# Line 623  if test -f ./.genmakerc ; then Line 1088  if test -f ./.genmakerc ; then
1088      echo      echo
1089  fi  fi
1090    
1091    #  Find the MITgcm ${ROOTDIR}
1092  if test "x${ROOTDIR}" = x ; then  if test "x${ROOTDIR}" = x ; then
1093      if test "${PWD##/*/}" = "bin" -a -d ../model -a -d ../eesup -a -d ../pkg ; then      tmp=`echo $PWD | sed -e 's/\// /g' | awk '{print $NR}'`
1094        if test "x$tmp" = "xbin" -a -d ../model -a -d ../eesup -a -d ../pkg ; then
1095          ROOTDIR=".."          ROOTDIR=".."
1096      else      else
1097          for d in . .. ../.. ../../.. ../../../.. ../../../../.. ; do          for d in . .. ../.. ../../.. ../../../.. ../../../../.. ; do
1098              if [ -d "$d/model" -a -d "$d/eesupp" -a -d "$d/pkg" ]; then              if [ -d "$d/model" -a -d "$d/eesupp" -a -d "$d/pkg" ]; then
1099                  ROOTDIR=$d                  ROOTDIR=$d
1100                  echo -n "Warning:  ROOTDIR was not specified but there appears to be"                  printf "Warning:  ROOTDIR was not specified but there appears to be"
1101                  echo " a copy of MITgcm at \"$ROOTDIR\" so we'll try it."                  echo " a copy of MITgcm at \"$ROOTDIR\" so we'll try it."
1102                  break                  break
1103              fi              fi
# Line 648  if test ! -d ${ROOTDIR} ; then Line 1115  if test ! -d ${ROOTDIR} ; then
1115      exit 1      exit 1
1116  fi  fi
1117    
1118    #  Find the MITgcm ${THISVER}
1119    if test -f "${ROOTDIR}/doc/tag-index" ; then
1120        THISVER=`grep checkpoint ${ROOTDIR}/doc/tag-index | head -1`
1121    fi
1122    
1123  echo "  getting OPTFILE information:  "  echo "  getting OPTFILE information:  "
1124  if test "x${OPTFILE}" = x ; then  if test "x${OPTFILE}" = x ; then
1125      if test "x$MITGCM_OF" = x ; then      if test "x$MITGCM_OF" = x ; then
# Line 664  if test "x$OPTFILE" != xNONE ; then Line 1136  if test "x$OPTFILE" != xNONE ; then
1136          . "$OPTFILE"          . "$OPTFILE"
1137          RETVAL=$?          RETVAL=$?
1138          if test "x$RETVAL" != x0 ; then          if test "x$RETVAL" != x0 ; then
1139              echo -n "Error: failed to source OPTFILE \"$OPTFILE\""              printf "Error: failed to source OPTFILE \"$OPTFILE\""
1140              echo "--please check that variable syntax is bash-compatible"              echo "--please check that variable syntax is bash-compatible"
1141              exit 1              exit 1
1142          fi          fi
# Line 677  if test "x$OPTFILE" != xNONE ; then Line 1149  if test "x$OPTFILE" != xNONE ; then
1149      fi      fi
1150  fi  fi
1151    
1152    #  Check for broken systems that cannot correctly distinguish *.F and *.f files
1153    # check_for_broken_Ff
1154    
1155  echo "  getting AD_OPTFILE information:  "  echo "  getting AD_OPTFILE information:  "
1156  if test "x${AD_OPTFILE}" = x ; then  if test "x${AD_OPTFILE}" = x ; then
1157      if test "x$MITGCM_AD_OF" = x ; then      if test "x$MITGCM_AD_OF" = x ; then
# Line 691  if test "x${AD_OPTFILE}" != xNONE ; then Line 1166  if test "x${AD_OPTFILE}" != xNONE ; then
1166          . "$AD_OPTFILE"          . "$AD_OPTFILE"
1167          RETVAL=$?          RETVAL=$?
1168          if test "x$RETVAL" != x0 ; then          if test "x$RETVAL" != x0 ; then
1169              echo -n "Error: failed to source AD_OPTFILE \"$AD_OPTFILE\""              printf "Error: failed to source AD_OPTFILE \"$AD_OPTFILE\""
1170              echo "--please check that variable syntax is bash-compatible"              echo "--please check that variable syntax is bash-compatible"
1171              exit 1              exit 1
1172          fi          fi
# Line 704  if test "x${AD_OPTFILE}" != xNONE ; then Line 1179  if test "x${AD_OPTFILE}" != xNONE ; then
1179      fi      fi
1180  fi  fi
1181    
1182  #  Check that FC, LINK, CPP, S64, and LN are defined.  If not,  #  Check that FC, CC, LINK, CPP, S64, LN, and MAKE are defined.  If not,
1183  #  complain and abort!  #  either set defaults or complain and abort!
1184    if test ! "x$BASH" = x ; then
1185        # add a trailing space so that it works within the Makefile syntax (see below)
1186        BASH="$BASH "
1187    fi
1188  if test "x$FC" = x ; then  if test "x$FC" = x ; then
1189      cat <<EOF 1>&2      cat <<EOF 1>&2
1190    
# Line 716  Error: no Fortran compiler: please speci Line 1195  Error: no Fortran compiler: please speci
1195  EOF  EOF
1196      exit 1      exit 1
1197  fi  fi
1198    if test "x$CC" = x ; then
1199        CC=cc
1200    #     cat <<EOF 1>&2
1201    # Error: no C compiler: please specify using one of the following:
1202    #   1) within the options file ("CC=...") as specified by "-of=OPTFILE"
1203    #   2) the "-cc=XXX" command-line option
1204    #   3) the "./genmake_local" file
1205    # EOF
1206    #     exit 1
1207    fi
1208  if test "x$LINK" = x ; then  if test "x$LINK" = x ; then
1209      LINK=$FC      LINK=$FC
1210  fi  fi
1211    if test "x$MAKE" = x ; then
1212        MAKE="make"
1213    fi
1214  if test "x$CPP" = x ; then  if test "x$CPP" = x ; then
1215      CPP="cpp"      CPP=cpp
1216  fi  fi
1217    #EH3 === UGLY ===
1218    #  The following is an ugly little hack to check for $CPP in /lib/ and
1219    #  it should eventually be replaced with a more general function that
1220    #  searches a combo of the user's path and a list of "usual suspects"
1221    #  to find the correct location for binaries such as $CPP.
1222    for i in " " "/lib/" ; do
1223        echo "#define A a" | $i$CPP > test_cpp 2>&1 && CPP=$i$CPP
1224    done
1225    #EH3 === UGLY ===
1226  echo "#define A a" | $CPP > test_cpp 2>&1  echo "#define A a" | $CPP > test_cpp 2>&1
1227  RETVAL=$?  RETVAL=$?
1228  if test "x$RETVAL" != x0 ; then  if test "x$RETVAL" != x0 ; then
# Line 738  EOF Line 1239  EOF
1239  else  else
1240      rm -f test_cpp      rm -f test_cpp
1241  fi  fi
1242  if test "x$MAKEDEPEND" = x ; then  look_for_makedepend
     MAKEDEPEND=makedepend  
 fi  
1243  if test "x$LN" = x ; then  if test "x$LN" = x ; then
1244      LN="ln -s"      LN="ln -s"
1245  fi  fi
# Line 758  EOF Line 1257  EOF
1257  fi  fi
1258  rm -f genmake_test_ln genmake_tlink  rm -f genmake_test_ln genmake_tlink
1259    
1260    #  Check for broken *.F/*.f handling and fix if possible
1261    check_for_broken_Ff
1262    
1263    if test ! "x$MPI" = x ; then
1264          echo "  Turning on MPI cpp macros"
1265          DEFINES="$DEFINES -DALLOW_USE_MPI -DALWAYS_USE_MPI"
1266    fi
1267    
1268  printf "\n===  Checking system libraries  ===\n"  printf "\n===  Checking system libraries  ===\n"
1269  echo -n "  Do we have the system() command using $FC...  "  printf "  Do we have the system() command using $FC...  "
1270  cat > genmake_tcomp.f <<EOF  cat > genmake_tcomp.f <<EOF
1271        program hello        program hello
1272        call system('echo hi')        call system('echo hi')
# Line 777  else Line 1284  else
1284  fi  fi
1285  rm -f genmake_tcomp*  rm -f genmake_tcomp*
1286    
1287  echo -n "  Do we have the fdate() command using $FC...  "  printf "  Do we have the fdate() command using $FC...  "
1288  cat > genmake_tcomp.f <<EOF  cat > genmake_tcomp.f <<EOF
1289        program hello        program hello
1290        CHARACTER(128) string        CHARACTER(128) string
# Line 798  else Line 1305  else
1305  fi  fi
1306  rm -f genmake_tcomp*  rm -f genmake_tcomp*
1307    
1308  echo "  The name mangling convention for $FC is...  "  printf "  Do we have the etime() command using $FC...  "
1309  #FC_NAMEMANGLE="#define FC_NAMEMANGLE(X) X ## _"  cat > genmake_tcomp.f <<EOF
1310  if test "x$FC_NAMEMANGLE" = x ; then        program hello
1311      get_fortran_c_namemangling        REAL*4 ACTUAL, TARRAY(2)
1312  fi        EXTERNAL ETIME
1313  echo "    '$FC_NAMEMANGLE'"        REAL*4 ETIME
1314  echo "$FC_NAMEMANGLE" > FC_NAMEMANGLE.h.template        actual = etime( tarray )
1315  cmp FC_NAMEMANGLE.h FC_NAMEMANGLE.h.template > /dev/null 2>&1        print *, tarray
1316          end
1317    EOF
1318    $FC $FFLAGS $DEFINES -o genmake_tcomp genmake_tcomp.f > genmake_tcomp.log 2>&1
1319  RETVAL=$?  RETVAL=$?
1320  if test "x$RETVAL" != x0 ; then  if test "x$RETVAL" = x0 ; then
1321      mv -f FC_NAMEMANGLE.h.template FC_NAMEMANGLE.h      HAVE_ETIME=t
1322        DEFINES="$DEFINES -DHAVE_ETIME"
1323        echo "yes"
1324    else
1325        HAVE_ETIME=
1326        echo "no"
1327    fi
1328    rm -f genmake_tcomp*
1329    
1330    printf "  Can we call simple C routines (here, \"cloc()\") using $FC...  "
1331    check_HAVE_CLOC
1332    if test "x$HAVE_CLOC" != x ; then
1333        echo "yes"
1334    else
1335        echo "no"
1336    fi
1337    rm -f genmake_t*
1338    
1339    printf "  Can we use stat() through C calls...  "
1340    check_HAVE_STAT
1341    if test "x$HAVE_STAT" != x ; then
1342        echo "yes"
1343    else
1344        echo "no"
1345    fi
1346    rm -f genmake_t*
1347    
1348    printf "  Can we create NetCDF-enabled binaries...  "
1349    check_netcdf_libs
1350    if test "x$HAVE_NETCDF" != x ; then
1351        echo "yes"
1352    else
1353        echo "no"
1354  fi  fi
1355    
1356    
1357  printf "\n===  Setting defaults  ===\n"  printf "\n===  Setting defaults  ===\n"
1358  echo -n "  Adding MODS directories:  "  printf "  Adding MODS directories:  "
1359  for d in $MODS ; do  for d in $MODS ; do
1360      if test ! -d $d ; then      if test ! -d $d ; then
1361          echo          echo
1362          echo "Error: MODS directory \"$d\" not found!"          echo "Error: MODS directory \"$d\" not found!"
1363          exit 1          exit 1
1364      else      else
1365          echo -n " $d"          printf " $d"
1366          SOURCEDIRS="$SOURCEDIRS $d"          SOURCEDIRS="$SOURCEDIRS $d"
1367          INCLUDEDIRS="$INCLUDEDIRS $d"          INCLUDEDIRS="$INCLUDEDIRS $d"
1368      fi      fi
# Line 835  if test "x${PLATFORM}" = x ; then Line 1377  if test "x${PLATFORM}" = x ; then
1377  fi  fi
1378    
1379  if test "x${EXEDIR}" = x ; then  if test "x${EXEDIR}" = x ; then
1380      if test "${PWD##/*/}" = "bin" -a -d ../exe -a $ROOTDIR = .. ; then      tmp=`echo $PWD | sed -e 's/\// /g' | awk '{print $NR}'`
1381        if test "x$tmp" = "xbin" -a -d ../exe -a $ROOTDIR = .. ; then
1382          EXEDIR=../exe          EXEDIR=../exe
1383      else      else
1384          EXEDIR=.          EXEDIR=.
# Line 850  if test "x${TOOLSDIR}" = x ; then Line 1393  if test "x${TOOLSDIR}" = x ; then
1393      TOOLSDIR="$ROOTDIR/tools"      TOOLSDIR="$ROOTDIR/tools"
1394  fi  fi
1395  if test ! -d ${TOOLSDIR} ; then  if test ! -d ${TOOLSDIR} ; then
1396      echo "Error: the specified $TOOLSDIR (\"$TOOLSDIR\") does not exist!"      echo "Error: the specified TOOLSDIR (\"$TOOLSDIR\") does not exist!"
1397      exit 1      exit 1
1398  fi  fi
1399  if test "x$S64" = x ; then  if test "x$S64" = x ; then
1400      S64='$(TOOLSDIR)/set64bitConst.sh'      echo "3.0 _d 3" | ${TOOLSDIR}/set64bitConst.sh > /dev/null 2>&1
1401        RETVAL=$?
1402        if test "x${RETVAL}" = x0 ; then
1403            S64='$(TOOLSDIR)/set64bitConst.sh'
1404        else
1405            echo "3.0 _d 3" | ${TOOLSDIR}/set64bitConst.csh > /dev/null 2>&1
1406            RETVAL=$?
1407            if test "x${RETVAL}" = x0 ; then
1408                S64='$(TOOLSDIR)/set64bitConst.csh'
1409            else
1410                cat <<EOF
1411    
1412    ERROR: neither of the two default scripts:
1413    
1414        ${TOOLSDIR}/set64bitConst.sh
1415        ${TOOLSDIR}/set64bitConst.csh
1416    
1417      are working so please check paths or specify (with \$S64) a
1418      working version of this script.
1419    
1420    EOF
1421                exit 1
1422            fi
1423        fi
1424  fi  fi
1425    THIS_SCRIPT=`echo ${0} | sed 's:'$TOOLSDIR':\$(TOOLSDIR):'`
1426    
1427  EXECUTABLE=${EXECUTABLE:-mitgcmuv}  EXECUTABLE=${EXECUTABLE:-mitgcmuv}
1428    
# Line 870  if test -r $ROOTDIR"/eesupp/src/Makefile Line 1437  if test -r $ROOTDIR"/eesupp/src/Makefile
1437          rm -f make_eesupp.errors          rm -f make_eesupp.errors
1438      else      else
1439          echo "Error: problem encountered while building source files in eesupp:"          echo "Error: problem encountered while building source files in eesupp:"
1440          cat make_eesupp.errors          cat make_eesupp.errors 1>&2
1441          exit 1          exit 1
1442      fi      fi
1443  fi  fi
1444    
1445    #same for exch2
1446    if test -r $ROOTDIR"/pkg/exch2/Makefile" ; then
1447        echo "  Making source files in exch2 from  templates"
1448        ( cd $ROOTDIR"/pkg/exch2/" && $MAKE ) > make_exch2.errors 2>&1
1449        RETVAL=$?
1450        if test "x${RETVAL}" = x0 ; then
1451            rm -f make_exch2.errors
1452        else
1453            echo "Error: problem encountered while building source files in exch2:"
1454            cat make_exch2.errors 1>&2
1455            exit 1
1456        fi
1457    fi
1458    
1459  printf "\n===  Determining package settings  ===\n"  printf "\n===  Determining package settings  ===\n"
1460  if  test "x${PDEPEND}" = x ; then  if  test "x${PDEPEND}" = x ; then
1461      tmp=$ROOTDIR"/pkg/pkg_depend"      tmp=$ROOTDIR"/pkg/pkg_depend"
# Line 907  rm -f ./.pd_tmp Line 1488  rm -f ./.pd_tmp
1488  #  Search for default packages.  Note that a "$ROOTDIR/pkg/pkg_groups"  #  Search for default packages.  Note that a "$ROOTDIR/pkg/pkg_groups"
1489  #  file should eventually be added so that, for convenience, one can  #  file should eventually be added so that, for convenience, one can
1490  #  specify groups of packages using names like "ocean" and "atmosphere".  #  specify groups of packages using names like "ocean" and "atmosphere".
1491  echo  -n "  checking default package list:  "  echo "  checking default package list:  "
1492  if test "x${PDEFAULT}" = x ; then  if test "x${PDEFAULT}" = x ; then
1493      for i in "." $MODS ; do      for i in "." $MODS ; do
1494          if test -r $i"/packages.conf" ; then          if test -r $i"/packages.conf" ; then
# Line 920  if test "x${PDEFAULT}" = x ; then Line 1501  if test "x${PDEFAULT}" = x ; then
1501      PDEFAULT="$ROOTDIR/pkg/pkg_default"      PDEFAULT="$ROOTDIR/pkg/pkg_default"
1502  fi  fi
1503  if test "x${PDEFAULT}" = xNONE ; then  if test "x${PDEFAULT}" = xNONE ; then
1504      echo "default packages file disabled"      echo "    default packages file disabled"
1505  else  else
1506      if test ! -r $PDEFAULT ; then      if test ! -r $PDEFAULT ; then
         echo ""  
1507          echo "Warning:  can't read default packages from PDEFAULT=\"$PDEFAULT\""          echo "Warning:  can't read default packages from PDEFAULT=\"$PDEFAULT\""
1508      else      else
1509          echo "  using PDEFAULT=\"$PDEFAULT\""          echo "    using PDEFAULT=\"$PDEFAULT\""
1510          #  Strip the comments and add all the names          #  Strip the comments and add all the names
1511          def=`cat $PDEFAULT | sed -e 's/#.*$//g' | $AWK '(NF>0){print $0}'`          def=`cat $PDEFAULT | sed -e 's/#.*$//g' | $AWK '(NF>0){print $0}'`
1512          RETVAL=$?          RETVAL=$?
1513          if test "x${RETVAL}" != x0 ; then          if test "x${RETVAL}" != x0 ; then
1514              echo -n "Error: can't parse default package list "              printf "Error: can't parse default package list "
1515              echo "-- please check PDEFAULT=\"$PDEFAULT\""              echo "-- please check PDEFAULT=\"$PDEFAULT\""
1516              exit 1              exit 1
1517          fi          fi
# Line 939  else Line 1519  else
1519              PACKAGES="$PACKAGES $i"              PACKAGES="$PACKAGES $i"
1520          done          done
1521          echo "    before group expansion packages are: $PACKAGES"          echo "    before group expansion packages are: $PACKAGES"
1522          expand_pkg_groups          RET=1
1523            while test $RET = 1 ; do expand_pkg_groups; RET=$?; done
1524          echo "    after group expansion packages are:  $PACKAGES"          echo "    after group expansion packages are:  $PACKAGES"
1525      fi      fi
1526  fi  fi
1527    
1528  echo "  applying DISABLE settings"  echo "  applying DISABLE settings"
1529    for i in $PACKAGES ; do
1530        echo $i >> ./.tmp_pack
1531    done
1532    for i in `grep  "-" ./.tmp_pack` ; do
1533        j=`echo $i | sed 's/[-]//'`
1534        DISABLE="$DISABLE $j"
1535    done
1536  pack=  pack=
1537  for p in $PACKAGES ; do  for p in $PACKAGES ; do
1538      addit="t"      addit="t"
# Line 961  PACKAGES="$pack" Line 1549  PACKAGES="$pack"
1549  echo "  applying ENABLE settings"  echo "  applying ENABLE settings"
1550  echo "" > ./.tmp_pack  echo "" > ./.tmp_pack
1551  PACKAGES="$PACKAGES $ENABLE"  PACKAGES="$PACKAGES $ENABLE"
1552    # Test if each explicitly referenced package exists
1553  for i in $PACKAGES ; do  for i in $PACKAGES ; do
1554      if test ! -d "$ROOTDIR/pkg/$i" ; then      j=`echo $i | sed 's/[-+]//'`
1555        if test ! -d "$ROOTDIR/pkg/$j" ; then
1556          echo "Error: can't find package $i at \"$ROOTDIR/pkg/$i\""          echo "Error: can't find package $i at \"$ROOTDIR/pkg/$i\""
1557          exit 1          exit 1
1558      fi      fi
1559      echo $i >> ./.tmp_pack      echo $i >> ./.tmp_pack
1560  done  done
 pack=`cat ./.tmp_pack | sort | uniq`  
 rm -f ./.tmp_pack  
1561  PACKAGES=  PACKAGES=
1562  for i in $pack ; do  for i in `grep -v "-" ./.tmp_pack | sort | uniq` ; do
1563      PACKAGES="$PACKAGES $i"      PACKAGES="$PACKAGES $i"
1564  done  done
1565    rm -f ./.tmp_pack
1566  echo "    packages are:  $PACKAGES"  echo "    packages are:  $PACKAGES"
1567    
1568    #  Check availability of NetCDF and then either build the MNC template
1569    #  files or delete mnc from the list of available packages.
1570    echo $PACKAGES | grep ' mnc ' > /dev/null 2>&1
1571    RETVAL=$?
1572    if test "x$RETVAL" = x0 ; then
1573        if test "x$HAVE_NETCDF" != xt ; then
1574            cat <<EOF
1575    
1576    *********************************************************************
1577    WARNING: the "mnc" package was enabled but tests failed to compile
1578      NetCDF applications.  Please check that:
1579    
1580      1) NetCDF is correctly installed for this compiler and
1581      2) the LIBS variable (within the "optfile") specifies the correct
1582           NetCDF library to link against.
1583    
1584      Due to this failure, the "mnc" package is now DISABLED.
1585    *********************************************************************
1586    
1587    EOF
1588            PACKAGES=`echo $PACKAGES | sed -e 's/mnc//g'`
1589            DISABLE="$DISABLE mnc"
1590        else
1591            ( cd $ROOTDIR"/pkg/mnc" && $MAKE testclean && $MAKE templates ) > make_mnc.errors 2>&1
1592            RETVAL=$?
1593            if test "x${RETVAL}" = x0 ; then
1594                rm -f make_mnc.errors
1595            else
1596                echo "Error: problem encountered while building source files in pkg/mnc:"
1597                cat make_mnc.errors 1>&2
1598                exit 1
1599            fi
1600        fi
1601    fi
1602    
1603  echo "  applying package dependency rules"  echo "  applying package dependency rules"
1604  ck=  ck=
1605  while test "x$ck" != xtt ; do  while test "x$ck" != xtt ; do
# Line 1040  while test "x$ck" != xtt ; do Line 1664  while test "x$ck" != xtt ; do
1664              echo "  the dependency rules for \"$dname\""              echo "  the dependency rules for \"$dname\""
1665              exit 1              exit 1
1666          fi          fi
1667          i=$(( $i + 1 ))          i=`echo "$i + 1" | bc -l`
1668            #i=$(( $i + 1 ))
1669      done      done
1670      ck=$ck"t"      ck=$ck"t"
1671  done  done
# Line 1059  for i in $PACKAGES ; do Line 1684  for i in $PACKAGES ; do
1684      fi      fi
1685  done  done
1686    
   
1687  # Create a list of #define and #undef to enable/disable packages  # Create a list of #define and #undef to enable/disable packages
1688  PACKAGES_DOT_H=PACKAGES_CONFIG.h  PACKAGES_DOT_H=PACKAGES_CONFIG.h
 cat <<EOF >$PACKAGES_DOT_H".tmp"  
 C=== GENMAKE v2 ===  
 C  The following defines have been set by GENMAKE, so please do not  
 C  edit anything below these comments.  In general, you should  
 C  add or remove packages by re-running genmake with different  
 C  "-enable" and/or "-disable" options.  
   
 #ifndef PACKAGES_H  
 #define PACKAGES_H  
   
 C  Packages disabled by genmake:  
 EOF  
1689  #  The following UGLY HACK sets multiple "#undef"s and it needs to go  #  The following UGLY HACK sets multiple "#undef"s and it needs to go
1690  #  away.  On 2003-08-12, CNH, JMC, and EH3 agreed that the CPP_OPTIONS.h  #  away.  On 2003-08-12, CNH, JMC, and EH3 agreed that the CPP_OPTIONS.h
1691  #  file would eventually be split up so that all package-related #define  #  file would eventually be split up so that all package-related #define
1692  #  statements could be separated and handled only by genmake.  #  statements could be separated and handled only by genmake.
1693  names=`ls -1 "$ROOTDIR/pkg"`  names=`ls -1 "$ROOTDIR/pkg"`
1694  all_pack=  all_pack=
1695    DISABLED_PACKAGES=
1696  for n in $names ; do  for n in $names ; do
1697      if test -d "$ROOTDIR/pkg/$n" -a "x$n" != xCVS ; then      if test -d "$ROOTDIR/pkg/$n" -a "x$n" != xCVS ; then
1698          has_pack="f"          has_pack="f"
# Line 1091  for n in $names ; do Line 1704  for n in $names ; do
1704          done          done
1705          if test "x$has_pack" = xf ; then          if test "x$has_pack" = xf ; then
1706              undef=`echo "ALLOW_$n" | $AWK '{print toupper($0)}'`              undef=`echo "ALLOW_$n" | $AWK '{print toupper($0)}'`
1707              echo "#undef $undef" >> $PACKAGES_DOT_H".tmp"              DISABLED_PACKAGES="$DISABLED_PACKAGES -U$undef"
1708          fi          fi
1709      fi      fi
1710  done  done
1711  cat <<EOF >>$PACKAGES_DOT_H".tmp"  ENABLED_PACKAGES=
   
 C  Packages enabled by genmake:  
 EOF  
1712  for i in $PACKAGES ; do  for i in $PACKAGES ; do
1713      def=`echo "ALLOW_$i" | $AWK '{print toupper($0)}'`      def=`echo "ALLOW_$i" | $AWK '{print toupper($0)}'`
1714      echo "#define $def" >> $PACKAGES_DOT_H".tmp"      ENABLED_PACKAGES="$ENABLED_PACKAGES -D$def"
1715  #eh3 DEFINES="$DEFINES -D$def"  #eh3 DEFINES="$DEFINES -D$def"
1716    
1717  #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!  #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!
1718      case $i in      case $i in
1719          aim_v23)          aim_v23)
1720              echo "#define   ALLOW_AIM" >> $PACKAGES_DOT_H".tmp"              ENABLED_PACKAGES="$ENABLED_PACKAGES -DALLOW_AIM"
1721              DEFINES="$DEFINES -DALLOW_AIM"              echo "Warning: ALLOW_AIM is set to enable aim_v23."
             echo "Warning: ALLOW_AIM is set to enable aim_v23. This is REALLY ugly Jean-Michel :-)"  
1722              ;;              ;;
1723      esac      esac
1724  #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!  #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!
1725    
1726  done  done
 cat <<EOF >>$PACKAGES_DOT_H".tmp"  
   
 #endif /* PACKAGES_H */  
 EOF  
   
 if test ! -f $PACKAGES_DOT_H ; then  
     mv -f $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H  
 else  
     cmp $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H  
     RETVAL=$?  
     if test "x$RETVAL" = x0 ; then  
         rm -f $PACKAGES_DOT_H".tmp"  
     else  
         mv -f $PACKAGES_DOT_H $PACKAGES_DOT_H".bak"  
         mv -f $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H  
     fi  
 fi  
1727    
1728  echo "  Adding STANDARDDIRS"  echo "  Adding STANDARDDIRS"
1729  BUILDDIR=${BUILDDIR:-.}  BUILDDIR=${BUILDDIR:-.}
1730  if test "x$STANDARDDIRS" = x ; then  if test "x$STANDARDDIRS" = xUSE_THE_DEFAULT ; then
1731      STANDARDDIRS="eesupp model"      STANDARDDIRS="eesupp model"
1732  fi  fi
1733  for d in $STANDARDDIRS ; do  if test "x$STANDARDDIRS" != x ; then
1734      adr="$ROOTDIR/$d/src"      for d in $STANDARDDIRS ; do
1735      if test ! -d $adr ; then          adr="$ROOTDIR/$d/src"
1736          echo "Error:  directory $adr not found -- please check that ROOTDIR=\"$ROOTDIR\""          if test ! -d $adr ; then
1737          echo "  is correct and that you correctly specified the STANDARDDIRS option"              echo "Error:  directory $adr not found -- please check that ROOTDIR=\"$ROOTDIR\""
1738          exit 1              echo "  is correct and that you correctly specified the STANDARDDIRS option"
1739      else              exit 1
1740          SOURCEDIRS="$SOURCEDIRS $adr"          else
1741      fi              SOURCEDIRS="$SOURCEDIRS $adr"
1742      adr="$ROOTDIR/$d/inc"          fi
1743      if test ! -d $adr ; then          adr="$ROOTDIR/$d/inc"
1744          echo "Error:  directory $adr not found -- please check that ROOTDIR=\"$ROOTDIR\""          if test ! -d $adr ; then
1745          echo "  is correct and that you correctly specified the STANDARDDIRS option"              echo "Error:  directory $adr not found -- please check that ROOTDIR=\"$ROOTDIR\""
1746          exit 1              echo "  is correct and that you correctly specified the STANDARDDIRS option"
1747      else              exit 1
1748          INCLUDEDIRS="$INCLUDEDIRS $adr"          else
1749      fi              INCLUDEDIRS="$INCLUDEDIRS $adr"
1750  done          fi
1751        done
1752    fi
1753    
1754  echo "  Searching for CPP_OPTIONS.h in order to warn about the presence"  echo "  Searching for *OPTIONS.h files in order to warn about the presence"
1755  echo "    of \"#define ALLOW_PKGNAME\"-type statements:"  echo "    of \"#define \"-type statements that are no longer allowed:"
1756  CPP_OPTIONS=  CPP_OPTIONS=
1757    CPP_EEOPTIONS=
1758  spaths=". $INCLUDEDIRS"  spaths=". $INCLUDEDIRS"
1759    names=`ls -1 "$ROOTDIR/pkg"`
1760  for i in $spaths ; do  for i in $spaths ; do
1761      try="$i/CPP_OPTIONS.h"      try="$i/CPP_OPTIONS.h"
1762      #  echo -n "    trying $try : "      if test -f $try -a -r $try -a "x$CPP_OPTIONS" = x ; then
     if test -f $try -a -r $try ; then  
1763          echo "    found CPP_OPTIONS=\"$try\""          echo "    found CPP_OPTIONS=\"$try\""
1764          CPP_OPTIONS="$try"          CPP_OPTIONS="$try"
1765          break          # New safety test: make sure packages are not mentioned in CPP_OPTIONS.h
1766            for n in $names ; do
1767                test_for_package_in_cpp_options $CPP_OPTIONS $n
1768            done
1769        fi
1770        try="$i/CPP_EEOPTIONS.h"
1771        if test -f $try -a -r $try -a "x$CPP_EEOPTIONS" = x ; then
1772            echo "    found CPP_EEOPTIONS=\"$try\""
1773            # New safety test: make sure MPI is not determined by CPP_EEOPTIONS.h
1774    #**** not yet enabled ****
1775    #        test_for_mpi_in_cpp_eeoptions $try
1776    #**** not yet enabled ****
1777            CPP_EEOPTIONS="$try"
1778      fi      fi
1779  done  done
1780  if test "x$CPP_OPTIONS" = x ; then  if test "x$CPP_OPTIONS" = x ; then
1781      echo "Error: can't find \"CPP_OPTIONS.h\" in the path list: $spaths"      echo "Error: can't find \"CPP_OPTIONS.h\" in the path list: $spaths"
1782      exit 1      exit 1
1783  fi  fi
 # New safety test: make sure packages are not mentioned in CPP_OPTIONS.h  
 names=`ls -1 "$ROOTDIR/pkg"`  
 for n in $names ; do  
     test_for_package_in_cpp_options $CPP_OPTIONS $n  
 done  
   
1784    
1785  #  Here, we build the list of files to be "run through" the adjoint  #  Here, we build the list of files to be "run through" the adjoint
1786  #  compiler.  #  compiler.
# Line 1194  for i in $SOURCEDIRS ; do Line 1795  for i in $SOURCEDIRS ; do
1795      done      done
1796  done  done
1797    
 cat <<EOF > adjoint_sed  
 s/call adopen(/call adopen ( mythid,\\  
      \&           /g  
 s/call adclose(/call adclose( mythid,\\  
      \&           /g  
 s/call adread(/call adread ( mythid,\\  
      \&           /g  
 s/call adwrite(/call adwrite( mythid,\\  
      \&           /g  
   
 EOF  
1798    
1799  echo  echo
1800  echo "===  Creating the Makefile  ==="  echo "===  Creating the Makefile  ==="
1801  echo "  setting INCLUDES"  echo "  setting INCLUDES"
1802  for i in $INCLUDEDIRS ; do  for i in $INCLUDEDIRS ; do
1803      if ! test -d $i ; then      if test ! -d $i ; then
 #       INCLUDES="$INCLUDES -I$i"  
 #   else  
1804          echo "Warning: can't find INCLUDEDIRS=\"$i\""          echo "Warning: can't find INCLUDEDIRS=\"$i\""
1805      fi      fi
1806  done  done
# Line 1222  rm -rf .links.tmp Line 1810  rm -rf .links.tmp
1810  mkdir .links.tmp  mkdir .links.tmp
1811  echo "# This section creates symbolic links" > srclinks.tmp  echo "# This section creates symbolic links" > srclinks.tmp
1812  echo "" >> srclinks.tmp  echo "" >> srclinks.tmp
1813  echo -n 'SRCFILES = '    > srclist.inc  printf 'SRCFILES = '    > srclist.inc
1814  echo -n 'CSRCFILES = '   > csrclist.inc  printf 'CSRCFILES = '   > csrclist.inc
1815  echo -n 'F90SRCFILES = ' > f90srclist.inc  printf 'F90SRCFILES = ' > f90srclist.inc
1816  echo -n 'HEADERFILES = ' > hlist.inc  printf 'HEADERFILES = ' > hlist.inc
1817  echo -n 'AD_FLOW_FILES = ' > ad_flow_files.inc  printf 'AD_FLOW_FILES = ' > ad_flow_files.inc
1818  alldirs="$SOURCEDIRS $INCLUDEDIRS ."  alldirs="$SOURCEDIRS $INCLUDEDIRS ."
1819  for d in $alldirs ; do  for d in $alldirs ; do
1820      deplist=      deplist=
# Line 1235  for d in $alldirs ; do Line 1823  for d in $alldirs ; do
1823      for sf in $sfiles ; do      for sf in $sfiles ; do
1824          if test ! -r ".links.tmp/$sf" ; then          if test ! -r ".links.tmp/$sf" ; then
1825              if test -f "$d/$sf" ; then              if test -f "$d/$sf" ; then
1826                    case $d/$sf in
1827                      ./$PACKAGES_DOT_H)
1828                            ;;
1829                      ./AD_CONFIG.h)
1830                            ;;
1831                      ./FC_NAMEMANGLE.h)
1832                            ;;
1833                      ./BUILD_INFO.h)
1834                            ;;
1835                      *)
1836                            touch .links.tmp/$sf
1837                            deplist="$deplist $sf"
1838                            ;;
1839                    esac
1840                  extn=`echo $sf | $AWK -F '.' '{print $NF}'`                  extn=`echo $sf | $AWK -F '.' '{print $NF}'`
                 touch .links.tmp/$sf  
                 deplist="$deplist $sf"  
1841                  case $extn in                  case $extn in
1842                      F)                      F)
1843                          echo    " \\"  >> srclist.inc                          echo    " \\"  >> srclist.inc
1844                          echo -n " $sf" >> srclist.inc                          printf " $sf" >> srclist.inc
1845                          ;;                          ;;
1846                      F90)                      F90)
1847                          echo    " \\"  >> f90srclist.inc                          echo    " \\"  >> f90srclist.inc
1848                          echo -n " $sf" >> f90srclist.inc                          printf " $sf" >> f90srclist.inc
1849                          ;;                          ;;
1850                      c)                      c)
1851                          echo    " \\"  >> csrclist.inc                          echo    " \\"  >> csrclist.inc
1852                          echo -n " $sf" >> csrclist.inc                          printf " $sf" >> csrclist.inc
1853                          ;;                          ;;
1854                      h)                      h)
1855                          echo    " \\"  >> hlist.inc                          echo    " \\"  >> hlist.inc
1856                          echo -n " $sf" >> hlist.inc                          printf " $sf" >> hlist.inc
1857                          ;;                          ;;
1858                      flow)                      flow)
1859                          echo    " \\"  >> ad_flow_files.inc                          echo    " \\"  >> ad_flow_files.inc
1860                          echo -n " $sf" >> ad_flow_files.inc                          printf " $sf" >> ad_flow_files.inc
1861                          ;;                          ;;
1862                  esac                  esac
1863              fi              fi
# Line 1277  echo "" >> f90srclist.inc Line 1877  echo "" >> f90srclist.inc
1877  echo "" >> hlist.inc  echo "" >> hlist.inc
1878  echo "" >> ad_flow_files.inc  echo "" >> ad_flow_files.inc
1879    
1880  if test -e $MAKEFILE ; then  if test -f $MAKEFILE ; then
1881      mv -f $MAKEFILE "$MAKEFILE.bak"      mv -f $MAKEFILE "$MAKEFILE.bak"
1882  fi  fi
1883  echo "  Writing makefile: $MAKEFILE"  echo "  Writing makefile: $MAKEFILE"
# Line 1286  echo "#    $MACHINE" >> $MAKEFILE Line 1886  echo "#    $MACHINE" >> $MAKEFILE
1886  echo "# This makefile was generated automatically on" >> $MAKEFILE  echo "# This makefile was generated automatically on" >> $MAKEFILE
1887  echo "#    $THISDATE" >> $MAKEFILE  echo "#    $THISDATE" >> $MAKEFILE
1888  echo "# by the command:" >> $MAKEFILE  echo "# by the command:" >> $MAKEFILE
1889  echo "#    $0 $@" >> $MAKEFILE  echo "#    $0 $G2ARGS" >> $MAKEFILE
1890  echo "# executed by:" >> $MAKEFILE  echo "# executed by:" >> $MAKEFILE
1891  echo "#    $USER@${THISHOSTNAME}:${THISCWD}" >> $MAKEFILE  echo "#    ${THISUSER}@${THISHOST}:${THISCWD}" >> $MAKEFILE
1892    
1893  EXE_AD=$EXECUTABLE"_ad"  EXE_AD=$EXECUTABLE"_ad"
1894  EXE_FTL=$EXECUTABLE"_ftl"  EXE_FTL=$EXECUTABLE"_ftl"
1895  EXE_SVD=$EXECUTABLE"_svd"  EXE_SVD=$EXECUTABLE"_svd"
1896    
1897  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
1898    #
1899    # OPTFILE="$OPTFILE"
1900  #  #
1901  # BUILDDIR     : Directory where object files are written  # BUILDDIR     : Directory where object files are written
1902  # SOURCEDIRS   : Directories containing the source (.F) files  # SOURCEDIRS   : Directories containing the source (.F) files
# Line 1328  EXE_AD      = ${EXE_AD} Line 1930  EXE_AD      = ${EXE_AD}
1930  EXE_FTL     = ${EXE_FTL}  EXE_FTL     = ${EXE_FTL}
1931  EXE_SVD     = ${EXE_SVD}  EXE_SVD     = ${EXE_SVD}
1932    
1933    ENABLED_PACKAGES = ${ENABLED_PACKAGES}
1934    DISABLED_PACKAGES = ${DISABLED_PACKAGES}
1935    
1936    # These files are created by Makefile
1937    SPECIAL_FILES = ${PACKAGES_DOT_H} AD_CONFIG.h FC_NAMEMANGLE.h BUILD_INFO.h
1938    
1939  EOF  EOF
1940    
1941  #  Note: figure out some way to add Hyades JAM libraries here  #  Note: figure out some way to add Hyades JAM libraries here
# Line 1345  KPP = ${KPP} Line 1953  KPP = ${KPP}
1953  FC = ${FC}  FC = ${FC}
1954  # Fortran compiler  # Fortran compiler
1955  F90C = ${F90C}  F90C = ${F90C}
1956    # C compiler
1957    CC = ${CC}
1958  # Link editor  # Link editor
1959  LINK = ${LINK}  LINK = ${LINK} ${LDADD}
1960    
1961  # Defines for CPP  # Defines for CPP
1962  DEFINES = ${DEFINES}  DEFINES = ${DEFINES}
# Line 1367  CFLAGS = ${CFLAGS} Line 1977  CFLAGS = ${CFLAGS}
1977  NOOPTFILES = ${NOOPTFILES}  NOOPTFILES = ${NOOPTFILES}
1978  NOOPTFLAGS = ${NOOPTFLAGS}  NOOPTFLAGS = ${NOOPTFLAGS}
1979  # Flags and libraries needed for linking  # Flags and libraries needed for linking
1980  LIBS = ${LIBS} \$(XLIBS)  LIBS = ${LIBS}
1981  # Name of the Mekfile  # Name of the Mekfile
1982  MAKEFILE=${MAKEFILE}  MAKEFILE=${MAKEFILE}
1983    
# Line 1378  cat csrclist.inc      >> $MAKEFILE Line 1988  cat csrclist.inc      >> $MAKEFILE
1988  cat f90srclist.inc    >> $MAKEFILE  cat f90srclist.inc    >> $MAKEFILE
1989  cat hlist.inc         >> $MAKEFILE  cat hlist.inc         >> $MAKEFILE
1990  cat ad_flow_files.inc >> $MAKEFILE  cat ad_flow_files.inc >> $MAKEFILE
1991  echo               >> $MAKEFILE  echo >> $MAKEFILE
1992  echo 'F77FILES =  $(SRCFILES:.F=.f)'                                           >> $MAKEFILE  echo 'F77FILES =  $(SRCFILES:.F=.'$FS')'      >> $MAKEFILE
1993  echo 'F90FILES =  $(F90SRCFILES:.F90=.f90)'                                    >> $MAKEFILE  echo 'F90FILES =  $(F90SRCFILES:.F=.'$FS90')' >> $MAKEFILE
1994  echo 'OBJFILES =  $(SRCFILES:.F=.o) $(CSRCFILES:.c=.o) $(F90SRCFILES:.F90=.o)' >> $MAKEFILE  echo 'OBJFILES =  $(SRCFILES:.F=.o) $(CSRCFILES:.c=.o) $(F90SRCFILES:.F90=.o)' >> $MAKEFILE
1995    echo >> $MAKEFILE
1996    echo '.SUFFIXES:' >> $MAKEFILE
1997    echo '.SUFFIXES: .o .'$FS' .p .F .c .'$FS90' .F90' >> $MAKEFILE
1998  rm -f srclist.inc csrclist.inc hlist.inc flist.tmp clist.tmp f90srclist.inc  rm -f srclist.inc csrclist.inc hlist.inc flist.tmp clist.tmp f90srclist.inc
1999  rm -f ad_flow_files.inc  rm -f ad_flow_files.inc
2000    
2001  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
2002    
 .SUFFIXES:  
 .SUFFIXES: .o .f .p .F .c .F90 .f90  
   
2003  all: \$(EXECUTABLE)  all: \$(EXECUTABLE)
2004  \$(EXECUTABLE): \$(OBJFILES)  \$(EXECUTABLE): \$(SPECIAL_FILES) \$(SRCFILES) \$(CSRCFILES) \$(HEADERFILES) \$(F90SRCFILES) \$(OBJFILES)
2005            @echo Creating \$@ ...
2006          \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) \$(LIBS)          \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) \$(LIBS)
2007  depend:  depend:
2008          @make links          @make links
2009          \$(MAKEDEPEND) -o .f \$(DEFINES) \$(INCLUDES) \$(SRCFILES)          \$(MAKEDEPEND) -o .$FS \$(DEFINES) \$(INCLUDES) \$(SRCFILES)
2010          ${TOOLSDIR}/f90mkdepend >> \$(MAKEFILE)          \$(TOOLSDIR)/f90mkdepend >> \$(MAKEFILE)
2011            -rm -f makedepend.out
2012    
2013  links: \$(SRCFILES) \$(CSRCFILES) \$(HEADERFILES) \$(F90SRCFILES)  links: \$(SRCFILES) \$(CSRCFILES) \$(HEADERFILES) \$(F90SRCFILES) \$(SPECIAL_FILES)
2014    
2015  small_f: \$(F77FILES) \$(F90FILES)  small_f: \$(F77FILES) \$(F90FILES)
2016    
# Line 1408  output.txt: \$(EXECUTABLE) Line 2019  output.txt: \$(EXECUTABLE)
2019          @\$(EXECUTABLE) > \$@          @\$(EXECUTABLE) > \$@
2020    
2021  clean:  clean:
2022          -cat AD_CONFIG.template > AD_CONFIG.h          -rm -rf *.o *.$FS *.p *.$FS90 *.mod ${RMFILES} work.{pc,pcl} *.template
         -rm -rf *.o *.f *.p *.f90 *.mod ${RMFILES} work.{pc,pcl}  
2023  Clean:  Clean:
2024          @make clean          @make clean
2025          @make cleanlinks          @make cleanlinks
2026          -rm -f Makefile.bak genmake_state genmake_*optfile make.log          -rm -f \$(SPECIAL_FILES)
2027            -rm -f genmake_state genmake_*optfile genmake_warnings make.log run.log *.bak
2028  CLEAN:  CLEAN:
2029          @make Clean          @make Clean
2030          -find \$(EXEDIR) -name "*.meta" -exec rm {} \;          -find \$(EXEDIR) -name "*.meta" -exec rm {} \;
2031          -find \$(EXEDIR) -name "*.data" -exec rm {} \;          -find \$(EXEDIR) -name "*.data" -exec rm {} \;
2032          -find \$(EXEDIR) -name "fort.*" -exec rm {} \;          -find \$(EXEDIR) -name "fort.*" -exec rm {} \;
2033          -rm -f \$(EXECUTABLE) output.txt          -rm -f \$(EXECUTABLE) output.txt STD*
2034    
2035  #eh3 Makefile: makefile  #eh3 Makefile: makefile
2036  makefile:  makefile:
2037          ${0} $@          $THIS_SCRIPT $G2ARGS
2038  cleanlinks:  cleanlinks:
2039          -find . -type l -exec rm {} \;          -find . -type l -exec rm {} \;
2040    
2041  # The normal chain of rules is (  .F - .f - .o  )  # Special targets (SPECIAL_FILES) which are create by make
2042  .F.f:  ${PACKAGES_DOT_H}:
2043            @echo Creating \$@ ...
2044            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bPACKAGES_CONFIG_H "Disabled packages:" \$(DISABLED_PACKAGES) " " "Enabled packages:" \$(ENABLED_PACKAGES) > \$@
2045    AD_CONFIG.h:
2046            @echo Creating \$@ ...
2047            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > \$@
2048    FC_NAMEMANGLE.h:
2049            @echo Creating \$@ ...
2050            echo "$FC_NAMEMANGLE" > \$@
2051    
2052    BUILD_INFO.h:
2053            @echo Creating \$@ ...
2054    EOF
2055    
2056    test ! "x$THISVER" = x  && echo "       -echo \"#define THISVER '$THISVER'\" > \$@"   >> $MAKEFILE
2057    test ! "x$THISUSER" = x && echo "       -echo \"#define THISUSER '$THISUSER'\" >> \$@" >> $MAKEFILE
2058    test ! "x$THISDATE" = x && echo "       -echo \"#define THISDATE '$THISDATE'\" >> \$@" >> $MAKEFILE
2059    test ! "x$THISHOST" = x && echo "       -echo \"#define THISHOST '$THISHOST'\" >> \$@" >> $MAKEFILE
2060    
2061    cat >>$MAKEFILE <<EOF
2062    
2063    # The normal chain of rules is (  .F - .$FS - .o  )
2064    
2065    ## This nullifies any default implicit rules concerning these two file types:
2066    ## %.o : %.F
2067    
2068    .F.$FS:
2069          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@
2070  .f.o:  .$FS.o:
2071          \$(FC) \$(FFLAGS) \$(FOPTIM) -c \$<          \$(FC) \$(FFLAGS) \$(FOPTIM) -c \$<
2072  .F90.f90:  .F90.$FS90:
2073          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@
2074  .f90.o:  .$FS90.o:
2075          \$(F90C) \$(F90FLAGS) \$(F90OPTIM) -c \$<          \$(F90C) \$(F90FLAGS) \$(F90OPTIM) -c \$<
2076  .c.o:  .c.o:
2077          \$(CC) \$(CFLAGS) -c \$<          \$(CC) \$(CFLAGS) -c \$<
2078    
2079  # Special exceptions that use the ( .F - .p - .f - .o ) rule-chain  # Special exceptions that use the ( .F - .p - .$FS - .o ) rule-chain
2080  .F.p:  .F.p:
2081          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@
2082  .p.f:  .p.$FS:
2083          \$(KPP) \$(KFLAGS1)\$@ \$(KFLAGS2) \$<          \$(KPP) \$(KFLAGS1)\$@ \$(KFLAGS2) \$<
2084    
2085  #=========================================  #=========================================
# Line 1469  done Line 2106  done
2106    
2107  echo "  Add the source list for AD code generation"  echo "  Add the source list for AD code generation"
2108  echo >> $MAKEFILE  echo >> $MAKEFILE
2109  echo -n "AD_FILES = " >> $MAKEFILE  printf "AD_FILES = " >> $MAKEFILE
2110  AD_FILES=`cat ad_files`  AD_FILES=`cat ad_files`
2111  for i in $AD_FILES ; do  for i in $AD_FILES ; do
2112      echo    " \\" >> $MAKEFILE      echo    " \\" >> $MAKEFILE
2113      echo -n " $i" >> $MAKEFILE      printf " $i" >> $MAKEFILE
2114  done  done
2115  echo >> $MAKEFILE  echo >> $MAKEFILE
2116  rm -f ad_files  rm -f ad_files
# Line 1486  adtaf: ad_taf_output.f Line 2123  adtaf: ad_taf_output.f
2123  adtamc: ad_tamc_output.f  adtamc: ad_tamc_output.f
2124    
2125  ad_input_code.f: \$(AD_FILES) \$(HEADERFILES)  ad_input_code.f: \$(AD_FILES) \$(HEADERFILES)
2126            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -DALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ad_config.template
2127          cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h          cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
2128            -rm -f ad_config.template
2129          @make \$(F77FILES)          @make \$(F77FILES)
2130          @make \$(AD_FLOW_FILES)          @make \$(AD_FLOW_FILES)
2131          cat \$(AD_FLOW_FILES) \$(AD_FILES) > ad_input_code.f          cat \$(AD_FLOW_FILES) \$(AD_FILES) > ad_input_code.f
2132    
2133  ad_taf_output.f: ad_input_code.f  ad_taf_output.f: ad_input_code.f
2134          \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.f          \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.f
2135          cat ad_input_code_ad.f | sed -f adjoint_sed > ad_taf_output.f          cat ad_input_code_ad.f | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.f
2136    
2137    adtafonly:
2138            \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.f
2139            cat ad_input_code_ad.f | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.f
2140    
2141  ad_taf: ad_taf_output.o \$(OBJFILES)  ad_taf: ad_taf_output.o \$(OBJFILES)
2142          \$(LINK) -o ${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_taf_output.o \$(LIBS)          \$(LINK) -o ${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_taf_output.o \$(LIBS)
2143    
2144  ad_tamc_output.f: ad_input_code.f  ad_tamc_output.f: ad_input_code.f
2145          \$(TAMC) \$(AD_TAMC_FLAGS) \$(TAMC_EXTRA) ad_input_code.f          \$(TAMC) \$(AD_TAMC_FLAGS) \$(TAMC_EXTRA) ad_input_code.f
2146          cat ad_input_code_ad.f | sed -f adjoint_sed > ad_tamc_output.f          cat ad_input_code_ad.f | sed -f \$(TOOLSDIR)/adjoint_sed > ad_tamc_output.f
2147    
2148  ad_tamc: ad_tamc_output.o \$(OBJFILES)  ad_tamc: ad_tamc_output.o \$(OBJFILES)
2149          \$(LINK) -o ${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_tamc_output.o \$(LIBS)          \$(LINK) -o ${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_tamc_output.o \$(LIBS)
2150    
2151    adonlyfwd:
2152            patch < \$(TOOLSDIR)/ad_taf_output.f.onlyfwd.diff
2153    
2154    adtrick:
2155            patch < \$(TOOLSDIR)/ad_taf_output.f.adtrick.diff
2156    
2157  # ... FTL ...  # ... FTL ...
2158  ftlall: ftl_taf  ftlall: ftl_taf
# Line 1512  ftltaf: ftl_taf_output.f Line 2160  ftltaf: ftl_taf_output.f
2160  ftltamc: ftl_tamc_output.f  ftltamc: ftl_tamc_output.f
2161    
2162  ftl_input_code.f: \$(AD_FILES) \$(HEADERFILES)  ftl_input_code.f: \$(AD_FILES) \$(HEADERFILES)
2163            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ftl_config.template
2164          cmp ftl_config.template AD_CONFIG.h || cat ftl_config.template > AD_CONFIG.h          cmp ftl_config.template AD_CONFIG.h || cat ftl_config.template > AD_CONFIG.h
2165            -rm -f ftl_config.template
2166          @make \$(F77FILES)          @make \$(F77FILES)
2167          @make \$(AD_FLOW_FILES)          @make \$(AD_FLOW_FILES)
2168          cat \$(AD_FLOW_FILES) \$(AD_FILES) > ftl_input_code.f          cat \$(AD_FLOW_FILES) \$(AD_FILES) > ftl_input_code.f
2169    
2170  ftl_taf_output.f: ftl_input_code.f  ftl_taf_output.f: ftl_input_code.f
2171          \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.f          \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.f
2172          cat ftl_input_code_ftl.f | sed -f adjoint_sed > ftl_taf_output.f          cat ftl_input_code_ftl.f | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.f
2173    
2174    ftltafonly:
2175            \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.f
2176            cat ftl_input_code_ftl.f | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.f
2177    
2178  ftl_taf: ftl_taf_output.o \$(OBJFILES)  ftl_taf: ftl_taf_output.o \$(OBJFILES)
2179          \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_taf_output.o \$(LIBS)          \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_taf_output.o \$(LIBS)
2180    
2181  ftl_tamc_output.f: ftl_input_code.f  ftl_tamc_output.f: ftl_input_code.f
2182          \$(TAMC) \$(FTL_TAMC_FLAGS) \$(TAMC_EXTRA) ftl_input_code.f          \$(TAMC) \$(FTL_TAMC_FLAGS) \$(TAMC_EXTRA) ftl_input_code.f
2183          cat ftl_input_code_ftl.f | sed -f adjoint_sed > ftl_tamc_output.f          cat ftl_input_code_ftl.f | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_tamc_output.f
2184    
2185  ftl_tamc: ftl_tamc_output.o \$(OBJFILES)  ftl_tamc: ftl_tamc_output.o \$(OBJFILES)
2186          \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_tamc_output.o \$(LIBS)          \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_tamc_output.o \$(LIBS)
2187    
2188    
2189  # ... SVD ...  # ... SVD ...
2190  svd: svd_taf  svdtaf: ad_taf_output.f ftl_taf_output.f
2191  svd_taf_f: svd_taf_output.f          @echo "--->>> Only ran TAF to generate SVD code!    <<<---"
2192            @echo "--->>> Do make svdall afterwards to compile. <<<---"
2193  svd_input_code.f: \$(SRCFILES)  svdall: svd_touch svd_taf
2194          cmp svd_config.template AD_CONFIG.h || cat svd_config.template > AD_CONFIG.h  
2195          @make \$(F77FILES)  svd_taf: \$(OBJFILES)
2196          @make \$(AD_FLOW_FILES)          \$(LINK) -o mitgcmuv_svd \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_taf_output.o ftl_taf_output.o \$(LIBS)
2197          cat \$(AD_FLOW_FILES) \$(AD_FILES) > svd_input_code.f  
2198            @echo "--->>> Only COMPILE svd code! <<<---"
2199  svd_taf_output.f: svd_input_code.f          @echo "--->>> Assumes you previously <<<---"
2200          \$(TAF) \$(SVD_TAF_FLAGS) \$(TAF_EXTRA) svd_input_code.f          @echo "--->>> did make svdtaf        <<<---"
2201          cat svd_input_code_ad.f | sed -f adjoint_sed > svd_taf_output.f  
2202    svd_touch:
2203  svd_taf: svd_taf_output.o \$(OBJFILES)          @echo "--->>> Only COMPILE svd code! <<<---"
2204          \$(LINK) -o ${EXE_SVD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) svd_taf_output.o \$(LIBS)          @echo "--->>> Assumes you previously <<<---"
2205            @echo "--->>> did make svdtaf        <<<---"
2206            touch ad_taf_output.f ftl_taf_output.f
2207            \$(FC) \$(FFLAGS) \$(FOPTIM) -c ad_taf_output.f
2208            \$(FC) \$(FFLAGS) \$(FOPTIM) -c ftl_taf_output.f
2209            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ftl_config.template
2210            cmp ftl_config.template AD_CONFIG.h || cat ftl_config.template > AD_CONFIG.h
2211            -rm -f ftl_config.template
2212    
2213  #=========================================  #=========================================
2214    
# Line 1565  for i in $KPPFILES ; do Line 2225  for i in $KPPFILES ; do
2225      if test "x$RETVAL" != x0 ; then      if test "x$RETVAL" != x0 ; then
2226          echo "Error: unable to add file \"$i\" to the exceptions list"          echo "Error: unable to add file \"$i\" to the exceptions list"
2227      fi      fi
2228      echo "$base.f: $base.p" >> $MAKEFILE      echo "$base.$FS: $base.p" >> $MAKEFILE
2229  done  done
2230    
2231  echo "  Making list of NOOPTFILES"  echo "  Making list of NOOPTFILES"
# Line 1575  for i in $NOOPTFILES ; do Line 2235  for i in $NOOPTFILES ; do
2235      if test "x$RETVAL" != x0 ; then      if test "x$RETVAL" != x0 ; then
2236          echo "Error: unable to add file \"$i\" to the exceptions list"          echo "Error: unable to add file \"$i\" to the exceptions list"
2237      fi      fi
2238      echo "$base.o: $base.f" >> $MAKEFILE      echo "$base.o: $base.$FS" >> $MAKEFILE
2239      printf "\t\$(FC) \$(FFLAGS) \$(NOOPTFLAGS) -c \$<\n" >> $MAKEFILE      printf "\t\$(FC) \$(FFLAGS) \$(NOOPTFLAGS) -c \$<\n" >> $MAKEFILE
2240  done  done
2241    
# Line 1588  printf "\n\n# DO NOT DELETE\n" >> $MAKEF Line 2248  printf "\n\n# DO NOT DELETE\n" >> $MAKEF
2248    
2249  printf "\n===  Done  ===\n"  printf "\n===  Done  ===\n"
2250    
2251  #  Write the "template" files for the adjoint builds  # Create special header files
2252  cat >AD_CONFIG.template <<EOF  $BASH $TOOLSDIR/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bPACKAGES_CONFIG_H "Disabled packages:" $DISABLED_PACKAGES " " "Enabled packages:" $ENABLED_PACKAGES > $PACKAGES_DOT_H".tmp"
2253  C  WARNING: This file is automatically generated by genmake2 and  if test ! -f $PACKAGES_DOT_H ; then
2254  C    used by the Makefile rules.  Please DO NOT EDIT this file      mv -f $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H
2255  C    unless you are CERTAIN that you know what you are doing.  else
2256        cmp $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H > /dev/null 2>&1
2257  #undef ALLOW_ADJOINT_RUN      RETVAL=$?
2258  #undef ALLOW_TANGENTLINEAR_RUN      if test "x$RETVAL" = x0 ; then
2259  #undef ALLOW_ECCO_OPTIMIZATION          rm -f $PACKAGES_DOT_H".tmp"
2260  EOF      else
2261  cat >ad_config.template <<EOF          mv -f $PACKAGES_DOT_H $PACKAGES_DOT_H".bak"
2262  C  WARNING: This file is automatically generated by genmake2 and          mv -f $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H
2263  C    used by the Makefile rules.  Please DO NOT EDIT this file      fi
2264  C    unless you are CERTAIN that you know what you are doing.  fi
2265    if test ! -f AD_CONFIG.h ; then
2266  #define ALLOW_ADJOINT_RUN      $BASH $TOOLSDIR/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > AD_CONFIG.h
2267  #undef ALLOW_TANGENTLINEAR_RUN  fi
 #undef ALLOW_ECCO_OPTIMIZATION  
 EOF  
 cat >ftl_config.template <<EOF  
 C  WARNING: This file is automatically generated by genmake2 and  
 C    used by the Makefile rules.  Please DO NOT EDIT this file  
 C    unless you are CERTAIN that you know what you are doing.  
   
 #undef ALLOW_ADJOINT_RUN  
 #define ALLOW_TANGENTLINEAR_RUN  
 #undef ALLOW_ECCO_OPTIMIZATION  
 EOF  
 cat >svd_config.template <<EOF  
 C  WARNING: This file is automatically generated by genmake2 and  
 C    used by the Makefile rules.  Please DO NOT EDIT this file  
 C    unless you are CERTAIN that you know what you are doing.  
   
 #undef ALLOW_ADJOINT_RUN  
 #undef ALLOW_TANGENTLINEAR_RUN  
 #undef ALLOW_ECCO_OPTIMIZATION  
 EOF  
 cp AD_CONFIG.template AD_CONFIG.h  
2268    
2269    
2270  #  Write the "state" for future records  #  Write the "state" for future records
2271  if test "x$DUMPSTATE" != xf ; then  if test "x$DUMPSTATE" != xf ; then
2272      echo -n "" > genmake_state      printf "" > genmake_state
2273      for i in $gm_state ; do      for i in $gm_state ; do
2274          t1="t2=\$$i"          t1="t2=\$$i"
2275          eval $t1          eval $t1

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