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Revision 1.255 - (show annotations) (download)
Thu Aug 8 17:34:27 2013 UTC (6 years, 4 months ago) by jmc
Branch: MAIN
Changes since 1.254: +3 -2 lines
always make a local copy of MPI header files (not only if using Divided Adjoint)
to accomodate TAF version-2 new settings

1 #! /usr/bin/env bash
2 #
3 # $Header: /u/gcmpack/MITgcm/tools/genmake2,v 1.254 2013/08/07 16:20:03 heimbach Exp $
4 # $Name: $
5 #
6 # Makefile generator for MITgcm UV codes
7 # created by cnh 03/98
8 # adapted by aja 06/98
9 # modified by aja 01/00
10 # rewritten in bash by eh3 08/03
11
12 # Explain usage
13 usage() {
14 cat <<EOF
15
16 Usage: "$0" [OPTIONS]
17 where [OPTIONS] can be:
18
19 -help | --help | -h | --h
20 Print this help message and exit.
21
22 -adoptfile NAME | --adoptfile NAME | -adof NAME | --adof NAME
23 -adoptfile=NAME | --adoptfile=NAME | -adof=NAME | --adof=NAME
24 Use "NAME" as the adoptfile. By default, the file at
25 "tools/adjoint_options/adjoint_default" will be used.
26
27 -nooptfile | --nooptfile
28 -optfile NAME | --optfile NAME | -of NAME | --of NAME
29 -optfile=NAME | --optfile=NAME | -of=NAME | --of=NAME
30 Use "NAME" as the optfile. By default, an attempt will be
31 made to find an appropriate "standard" optfile in the
32 tools/build_options/ directory.
33
34 -pdepend NAME | --pdepend NAME
35 -pdepend=NAME | --pdepend=NAME
36 Get package dependency information from "NAME".
37
38 -pgroups NAME | --pgroups NAME
39 -pgroups=NAME | --pgroups=NAME
40 Get the package groups information from "NAME".
41
42 -bash NAME
43 Explicitly specify the Bourne or BASH shell to use
44
45 -make NAME | -m NAME
46 --make=NAME | -m=NAME
47 Use "NAME" for the MAKE program. The default is "make" but
48 many platforms, "gmake" is the preferred choice.
49
50 -makefile NAME | -mf NAME
51 --makefile=NAME | -mf=NAME
52 Call the makefile "NAME". The default is "Makefile".
53
54 -makedepend NAME | -md NAME
55 --makedepend=NAME | -md=NAME
56 Use "NAME" for the MAKEDEPEND program.
57
58 -rootdir NAME | --rootdir NAME | -rd NAME | --rd NAME
59 -rootdir=NAME | --rootdir=NAME | -rd=NAME | --rd=NAME
60 Specify the location of the MITgcm ROOTDIR as "NAME".
61 By default, genamke will try to find the location by
62 looking in parent directories (up to the 5th parent).
63
64 -mods NAME | --mods NAME | -mo NAME | --mo NAME
65 -mods=NAME | --mods=NAME | -mo=NAME | --mo=NAME
66 Here, "NAME" specifies a list of directories that are
67 used for additional source code. Files found in the
68 "mods list" are given preference over files of the same
69 name found elsewhere.
70
71 -disable NAME | --disable NAME
72 -disable=NAME | --disable=NAME
73 Here "NAME" specifies a list of packages that we don't
74 want to use. If this violates package dependencies,
75 genamke will exit with an error message.
76
77 -enable NAME | --enable NAME
78 -enable=NAME | --enable=NAME
79 Here "NAME" specifies a list of packages that we wish
80 to specifically enable. If this violates package
81 dependencies, genamke will exit with an error message.
82
83 -standarddirs NAME | --standarddirs NAME
84 -standarddirs=NAME | --standarddirs=NAME
85 Here, "NAME" specifies a list of directories to be
86 used as the "standard" code.
87
88 -fortran NAME | --fortran NAME | -fc NAME | --fc NAME
89 -fc=NAME | --fc=NAME
90 Use "NAME" as the fortran compiler. By default, genmake
91 will search for a working compiler by trying a list of
92 "usual suspects" such as g77, f77, etc.
93
94 -cc NAME | --cc NAME | -cc=NAME | --cc=NAME
95 Use "NAME" as the C compiler. By default, genmake
96 will search for a working compiler by trying a list of
97 "usual suspects" such as gcc, c89, cc, etc.
98
99 -use_real4 | -use_r4 | -ur4 | --use_real4 | --use_r4 | --ur4
100 Use "real*4" type for _RS variable (#undef REAL4_IS_SLOW)
101 *only* works if CPP_EEOPTIONS.h allows this.
102
103 -ignoretime | -ignore_time | --ignoretime | --ignore_time
104 Ignore all the "wall clock" routines entirely. This will
105 not in any way hurt the model results -- it simply means
106 that the code that checks how long the model spends in
107 various routines will give junk values.
108
109 -ts | --ts
110 Produce timing information per timestep
111 -papis | --papis
112 Produce summary MFlop/s (and IPC) with PAPI per timestep
113 -pcls | --pcls
114 Produce summary MFlop/s etc. with PCL per timestep
115 -foolad | --foolad
116 Fool the AD code generator
117 -papi | --papi
118 Performance analysis with PAPI
119 -pcl | --pcl
120 Performance analysis with PCL
121 -hpmt | --hpmt
122 Performance analysis with the HPM Toolkit
123
124 -ieee | --ieee
125 use IEEE numerics. Note that this option *only* works
126 if it is supported by the OPTFILE that is being used.
127 -devel | --devel
128 Add additional warning and debugging flags for development
129 (if supported by the OPTFILE); also switch to IEEE numerics.
130 -gsl | --gsl
131 Use GSL to control floating point rounding and precision
132
133 -mpi | --mpi
134 Include MPI header files and link to MPI libraries
135 -mpi=PATH | --mpi=PATH
136 Include MPI header files and link to MPI libraries using MPI_ROOT
137 set to PATH. i.e. Include files from \$PATH/include, link to libraries
138 from \$PATH/lib and use binaries from \$PATH/bin.
139
140 -omp | --omp
141 Activate OpenMP code + use Compiler option OMPFLAG
142 -omp=OMPFLAG | --omp=OMPFLAG
143 Activate OpenMP code + use Compiler option OMPFLAG
144
145 -es | --es | -embed-source | --embed-source
146 Embed a tarball containing the full source code
147 (including the Makefile, etc.) used to build the
148 executable [off by default]
149
150 -ds | --ds
151 Report genmake internal variables status (DUMPSTATE)
152 to file "genmake_state" (for debug purpose)
153
154 While it is most often a single word, the "NAME" variables specified
155 above can in many cases be a space-delimited string such as:
156
157 --enable pkg1 --enable 'pkg1 pkg2' --enable 'pkg1 pkg2 pkg3'
158 -mods=dir1 -mods='dir1' -mods='dir1 dir2 dir3'
159 -foptim='-Mvect=cachesize:512000,transform -xtypemap=real:64,double:64,integer:32'
160
161 which, depending upon your shell, may need to be single-quoted.
162
163 For more detailed genmake documentation, please see:
164
165 http://mitgcm.org/public/devel_HOWTO/
166
167 EOF
168
169 exit 1
170 }
171
172 # Search for particular CPP #cmds associated with packages
173 # usage: test_for_package_in_cpp_options CPP_file package_name
174 test_for_package_in_cpp_options() {
175 cpp_options=$1
176 pkg=$2
177 test_for_string_in_file $cpp_options "^ *# *define *\<ALLOW_$pkg\>"
178 test_for_string_in_file $cpp_options "^ *# *undef *\<ALLOW_$pkg\>"
179 test_for_string_in_file $cpp_options "^ *# *define *\<DISABLE_$pkg\>"
180 test_for_string_in_file $cpp_options "^ *# *undef *\<DISABLE_$pkg\>"
181 }
182
183 # Search for particular CPP #cmds associated with MPI
184 # usage: test_for_mpi_in_cpp_eeoptions CPP_file
185 test_for_mpi_in_cpp_eeoptions() {
186 cpp_options=$1
187 test_for_string_in_file $cpp_options "^ *# *define *\<ALLOW_USE_MPI\>"
188 test_for_string_in_file $cpp_options "^ *# *undef *\<ALLOW_USE_MPI\>"
189 }
190
191 # Search for particular string in a file. Return 1 if detected, 0 if not
192 # usage: test_for_string_in_file file string
193 test_for_string_in_file() {
194 file=$1
195 strng=$2
196 grep "$strng" $file > /dev/null 2>&1
197 RETVAL=$?
198 if test "x${RETVAL}" = x0 ; then
199 printf "Error: In $file there is an illegal line: "
200 grep -i "$strng" $file
201 exit 99
202 fi
203 return 0
204 }
205
206 # Read the $ROOTDIR/pkg/pkg_groups file and expand any references to
207 # the package list.
208 expand_pkg_groups() {
209 new_packages=
210 if test -r $PKG_GROUPS ; then
211 cat $PKG_GROUPS | sed -e 's/#.*$//g' | sed -e 's/:/ : /g' > ./p1.tmp
212 cat ./p1.tmp | $AWK '(NF>2 && $2==":"){ print $0 }' > ./p2.tmp
213 matched=0
214 for i in $PACKAGES ; do
215 line=`grep "^ *$i" ./p2.tmp`
216 RETVAL=$?
217 if test "x$RETVAL" = x0 ; then
218 matched=1
219 replace=`echo $line | $AWK '{ $1=""; $2=""; print $0 }'`
220 echo " replacing \"$i\" with:$replace"
221 new_packages="$new_packages $replace"
222 else
223 new_packages="$new_packages $i"
224 fi
225 done
226 PACKAGES=$new_packages
227 rm -f ./p[1,2].tmp
228 return $matched
229 else
230 echo "Warning: can't read package groups definition file: $PKG_GROUPS"
231 fi
232 }
233
234 # Check for broken environments (eg. cygwin, MacOSX w/HFS+) that
235 # cannot distinguish [*.F/*.F90] from [*.f/*.f90] files.
236 check_for_broken_Ff() {
237 # Do we have defaults for $FS and/or $FS90 ?
238 tfs=f
239 tfs9=f90
240 if test "x$FS" != x ; then
241 tfs="$FS"
242 fi
243 if test "x$FS90" != x ; then
244 tfs9="$FS90"
245 fi
246
247 # First check the ability to create a *.F/.f pair.
248 cat <<EOF >> genmake_hello.F
249 program hello
250 write(*,*) 'hi'
251 stop
252 end
253 EOF
254 cp genmake_hello.F "genmake_hello."$tfs > /dev/null 2>&1
255 RETVAL=$?
256 if test "x$RETVAL" != x0 ; then
257 if test "x$FS" = x ; then
258 FS='for'
259 FS90='fr9'
260 check_for_broken_Ff
261 else
262 cat <<EOF 2>&1
263 ERROR: Your file system cannot distinguish between *.F and *.f files
264 (fails the "cp" test) and this program cannot find a suitable
265 replacement extension. Please try a different build environment or
266 contact the <MITgcm-support@mitgcm.org> list for help.
267
268 EOF
269 exit -1
270 fi
271 return
272 fi
273 rm -f genmake_hello.*
274
275 # Check the ability of ${MAKE} and ${LN} to use the current set
276 # of extensions.
277 cat <<EOF >> genmake_hello.F
278 program hello
279 write(*,*) 'hi'
280 stop
281 end
282 EOF
283 test -f $MAKEFILE && mv -f $MAKEFILE $MAKEFILE".tst"
284 cat <<EOF >> $MAKEFILE
285 .SUFFIXES:
286 .SUFFIXES: .$tfs .F
287 .F.$tfs:
288 $LN \$< \$@
289 EOF
290 $MAKE -f $MAKEFILE "genmake_hello."$tfs > /dev/null 2>&1
291 RETVAL=$?
292 if test "x$RETVAL" != x0 -o ! -f "genmake_hello."$tfs ; then
293 if test "x$FS" = x ; then
294 FS='for'
295 FS90='fr9'
296 check_for_broken_Ff
297 else
298 echo "ERROR: test: '$MAKE -f $MAKEFILE genmake_hello.$tfs' Failed"
299 echo " see simple makefile: '$MAKEFILE' (left here)"
300 echo " Please check (1) your '$MAKE' command, (2) your '$LN' command"
301 echo " and (3) the allowed sufix '.F' and '.$tfs' in makefile"
302 echo " or contact the <MITgcm-support@mitgcm.org> list for help."
303 echo ""
304 exit -1
305 return
306 fi
307 fi
308 rm -f genmake_hello.* $MAKEFILE
309 test -f $MAKEFILE".tst" && mv -f $MAKEFILE".tst" $MAKEFILE
310
311 # If we make it here, use the extensions
312 FS=$tfs
313 FS90=$tfs9
314 return
315 }
316
317 look_for_makedepend() {
318
319 # The "original" makedepend is part of the Imake system that is
320 # most often distributed with XFree86 or with an XFree86 source
321 # package. As a result, many machines (eg. generic Linux) do not
322 # have a system-default "makedepend" available. For those
323 # systems, we have two fall-back options:
324 #
325 # 1) a makedepend implementation shipped with the cyrus-imapd
326 # package: ftp://ftp.andrew.cmu.edu/pub/cyrus-mail/
327 # 2) a local tools/xmakedepend shell script
328 #
329 # So the choices are, in order:
330 # 1) use the user-specified program
331 # 2) use the local xmakedepend script (get all dependencies, but slower)
332 # 3) use a system-wide default
333 # 4) locally build and use the cyrus makedepend
334 # (faster, but can miss some dependencies)
335 #
336 echo >> $LOGFILE
337 echo "running: look_for_makedepend()" >> $LOGFILE
338 if test "x${MAKEDEPEND}" != x ; then
339 echo "${MAKEDEPEND}" | grep -i cyrus > /dev/null 2>&1
340 RETVAL=$?
341 if test x"$RETVAL" = x0 ; then
342 build_cyrus_makedepend
343 RETVAL=$?
344 if test "x$RETVAL" != x0 ; then
345 echo "WARNING: unable to build cyrus-makedepend. Try other 'makedepend'"
346 MAKEDEPEND=
347 fi
348 else
349 echo "${MAKEDEPEND}" | grep 'tools.xmakedepend' > /dev/null 2>&1
350 RETVAL=$?
351 if test "x$RETVAL" = x0 ; then
352 MAKEDEPEND='$(TOOLSDIR)/xmakedepend'
353 fi
354 echo " --> MAKEDEPEND=${MAKEDEPEND}" >> $LOGFILE
355 fi
356 fi
357 if test "x${MAKEDEPEND}" = x ; then
358 test -f $MAKEFILE && mv -f $MAKEFILE $MAKEFILE".tst"
359 # echo 'MAKEFILE="'$MAKEFILE'"'
360 cat <<EOF >> $MAKEFILE
361 # THIS IS A TEST MAKEFILE GENERATED BY "genmake2"
362 #
363 # Some "makedepend" implementations will die if they cannot
364 # find a Makefile -- so this file is here to gives them an
365 # empty one to find and parse.
366 EOF
367 cat <<EOF >> genmake_tc.f
368 program test
369 write(*,*) 'test'
370 stop
371 end
372 EOF
373 $ROOTDIR/tools/xmakedepend -f $MAKEFILE genmake_tc.f > /dev/null 2>&1
374 RV1=$?
375 which makedepend > /dev/null 2>&1
376 RV2=$?
377 if test "x${RV2}" = x0 ; then
378 makedepend -f $MAKEFILE genmake_tc.f > /dev/null 2>&1
379 RV3=$? ; loc_msg='not working.'
380 else RV3=$RV2 ; loc_msg='not found.'
381 fi
382 test -f $MAKEFILE && rm -f $MAKEFILE
383 test -f $MAKEFILE".tst" && mv -f $MAKEFILE".tst" $MAKEFILE
384 echo " check makedepend (local: $RV1, system: $RV2, $RV3)"
385 if test "x${RV1}" = x0 ; then
386 MAKEDEPEND='$(TOOLSDIR)/xmakedepend'
387 echo " --> set MAKEDEPEND=${MAKEDEPEND}" >> $LOGFILE
388 elif test "x${RV3}" = x0 ; then
389 echo " local tools/xmakedepend not working. Use system-default makedepend"
390 MAKEDEPEND=makedepend
391 echo " --> set MAKEDEPEND=${MAKEDEPEND}" >> $LOGFILE
392 else
393 echo " local tools/xmakedepend not working; system-default makedepend $loc_msg"
394 echo -n " Try to build cyrus-makedepend ..."
395 # Try to build the cyrus implementation
396 build_cyrus_makedepend
397 RETVAL=$?
398 if test "x$RETVAL" = x0 ; then
399 echo " Works"
400 else
401 echo " Fails" ; echo "" >> $LOGFILE
402 echo "ERROR: no working makedepend found ; look_for_makedepend FAILED" | tee -a $LOGFILE
403 echo ""
404 exit -1
405 return
406 fi
407 fi
408 fi
409 }
410
411 build_cyrus_makedepend() {
412 echo >> $LOGFILE
413 echo "running: build_cyrus_makedepend()" >> $LOGFILE
414 rm -f ./genmake_cy_md
415 (
416 cd $ROOTDIR/tools/cyrus-imapd-makedepend \
417 && ./configure > /dev/null 2>&1 \
418 && $MAKE > /dev/null 2>&1
419 if test -x ./makedepend.exe ; then
420 $LN ./makedepend.exe ./makedepend
421 fi
422 ./makedepend ifparser.c > /dev/null 2>&1 \
423 && echo "true"
424 ) > ./genmake_cy_md
425 grep true ./genmake_cy_md > /dev/null 2>&1
426 RETVAL=$?
427 rm -f ./genmake_cy_md
428 if test "x$RETVAL" = x0 ; then
429 MAKEDEPEND='$(TOOLSDIR)/cyrus-imapd-makedepend/makedepend'
430 echo " --> set MAKEDEPEND=${MAKEDEPEND}" >> $LOGFILE
431 return 0
432 else
433 echo "WARNING: fail to build cyrus-imapd-makedepend" >> $LOGFILE
434 return 1
435 fi
436 }
437
438 build_embed_encode()
439 {
440 printf " building the embed-encode utility... "
441 if test ! -e "$ROOTDIR/tools/embed_encode/encode_files" ; then
442 if test ! -d "$ROOTDIR/tools/embed_encode" ; then
443 echo
444 echo " Error: can't locate \"$ROOTDIR/tools/embed_encode\""
445 echo
446 EMBED_SRC=f
447 return 1
448 fi
449 clist="cc gcc c89 $CC"
450 for ic in $clist ; do
451 comm="$ic -o encode_files encode_files.c"
452 ( cd $ROOTDIR/tools/embed_encode && $comm ) > /dev/null 2>&1
453 RETVAL=$?
454 if test "x$RETVAL" = x0 ; then
455 echo "OK"
456 return 0
457 fi
458 done
459 echo
460 echo " Error: unable to build $ROOTDIR/embed_encode/encode_files"
461 echo " so it has been disabled"
462 echo
463 EMBED_SRC=f
464 return 1
465 fi
466 echo "OK"
467 }
468
469 # look for possible C compilers
470 look_for_C_compilers() {
471 echo >> $LOGFILE
472 echo "running: look_for_C_compilers()" >> $LOGFILE
473 rm -f ./genmake_hello.c ./genmake_hello
474 cat >> genmake_hello.c << EOF
475 #include <stdio.h>
476 int main(int argc, char **argv) {
477 printf("Hello!\n");
478 return 0;
479 }
480 EOF
481 tmp="$MITGCM_CC $CC gcc c89 cc c99 mpicc icc"
482 p_CC=
483 for c in $tmp ; do
484 COMM="$c $CFLAGS -o genmake_hello genmake_hello.c"
485 echo $COMM >> $LOGFILE
486 $COMM >> $LOGFILE 2>&1
487 RETVAL=$?
488 if test "x${RETVAL}" = x0 ; then
489 echo " $c test successful" >> $LOGFILE
490 p_CC="$p_CC $c"
491 fi
492 done
493 rm -f ./genmake_hello.c ./genmake_hello
494 if test "x${p_CC}" = x ; then
495 cat 1>&2 <<EOF
496
497 Error: No C compilers were found in your path. Please specify one using:
498
499 1) an "optfile" on (eg. "-optfile=path/to/OPTFILE"),
500 2) the CC or MITGCM_CC environment variables.
501
502 EOF
503 exit 1
504 else
505 echo " The possible C compilers found in your path are: $p_CC" | tee -a $LOGFILE
506 if test "x$CC" = x ; then
507 CC=`echo $p_CC | $AWK '{print $1}'`
508 echo " Setting C compiler to: "$CC
509 fi
510 fi
511 echo " --> set CC='$CC'" >> $LOGFILE
512 }
513
514 # Guess possible config options for this host
515 find_possible_optfile() {
516
517 echo >> $LOGFILE
518 echo "running: find_possible_optfile()" >> $LOGFILE
519 tmp1=`uname`"_"`uname -m`
520 tmp2=`echo $tmp1 | sed -e 'y/ABCDEFGHIJKLMNOPQRSTUVWXYZ/abcdefghijklmnopqrstuvwxyz/'`
521 tmp3=`echo $tmp2 | sed -e 's/power macintosh/ppc/'`
522 tmp1=`echo $tmp3 | sed -e 's|x86_64|amd64|'`
523 tmp2=`echo $tmp1 | sed -e 's/i[3-6]86/ia32/' | sed -e 's/athlon/ia32/'`
524 tmp3=`echo $tmp2 | sed -e 's/cray sv1/craysv1/'`
525 PLATFORM=$tmp3
526 echo $PLATFORM | grep cygwin > /dev/null 2>&1 && PLATFORM=cygwin_ia32
527 OFLIST=`(cd $ROOTDIR/tools/build_options; ls | grep "^$PLATFORM")`
528 echo " The platform appears to be: $PLATFORM" | tee -a $LOGFILE
529
530 #================================================================
531 # look for possible FORTRAN compilers
532 echo " look for possible FORTRAN compilers" >> $LOGFILE
533 tmp="$MITGCM_FC $FC efc gfortran g77 f77 pgf77 pgf95 ifc ifort f90 f95 mpif77 mpf77 mpxlf95 g95"
534 p_FC=
535 rm -f ./genmake_hello.f
536 cat >> genmake_hello.f <<EOF
537 program hello
538 do i=1,3
539 print *, 'hello world : ', i
540 enddo
541 end
542 EOF
543 for f in $tmp ; do
544 COMM="$f -o genmake_hello genmake_hello.f"
545 echo $COMM >> $LOGFILE
546 $COMM >> $LOGFILE 2>&1
547 RETVAL=$?
548 if test "x${RETVAL}" = x0 ; then
549 echo " $f test successful" >> $LOGFILE
550 p_FC="$p_FC $f"
551 fi
552 done
553 rm -f ./genmake_hello.f ./genmake_hello
554 if test "x${p_FC}" = x ; then
555 cat 1>&2 <<EOF
556
557 Error: No Fortran compilers were found in your path. Please specify one using:
558
559 1) an "optfile" on (eg. "-optfile=path/to/OPTFILE"),
560 2) a command-line option (eg. "-fc NAME"), or
561 3) the FC or MITGCM_FC environment variables.
562
563 EOF
564 exit 1
565 else
566 echo " The possible FORTRAN compilers found in your path are: $p_FC" | tee -a $LOGFILE
567 fi
568
569 # Use the first of the compilers found in the current PATH
570 # that has a correctly-named optfile
571 if test "x$OPTFILE" = x -a "x$FC" = x ; then
572 for i in $p_FC ; do
573 OPTFILE=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$i
574 if test -r $OPTFILE ; then
575 echo " Setting OPTFILE to: "$OPTFILE | tee -a $LOGFILE
576 break
577 fi
578 done
579 fi
580
581 if test "x$OPTFILE" = x ; then
582 OPTFILE=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$FC
583 if test ! -r $OPTFILE ; then
584 echo " I looked for the file "$OPTFILE" but did not find it"
585 fi
586 fi
587
588 if test "x$OPTFILE" = x ; then
589 cat 1>&2 <<EOF
590
591 Error: No options file was found in: $ROOTDIR/tools/build_options/
592 that matches this platform ("$PLATFORM") and the compilers found in
593 your path. Please specify an "optfile" using:
594
595 1) the command line (eg. "-optfile=path/to/OPTFILE"), or
596 2) the MITGCM_OF environment variable.
597
598 If you need help, please contact the developers at <MITgcm-support@mitgcm.org>.
599
600 EOF
601 exit 1
602 fi
603 }
604
605 # Do a local copy of MPI headers files (in local dir ./mpi_headers/) after
606 # checking for additional included headers (in case of chain of included header)
607 mpi_headers_do_local_copy() {
608
609 dBug=0
610 rm -rf ./mpi_headers
611 if test -d $MPIINCLUDEDIR ; then
612
613 #----- check for additional headers (chain of included headers)
614 echo -n ' Check MPI headers ... '
615 listIni=$MPI_HEADER_FILES
616 echo $listIni | grep "\<mpif.h\>" > /dev/null 2>&1
617 outp=$?
618 #- always check mpif.h (the only mpi-header included in standard MITgcm code)
619 if test $outp != 0 ; then listIni="mpif.h $listIni" ; fi
620 if test $dBug = 1 ; then echo "listIni='$listIni'" ; fi
621
622 doCheck=1 ; list2copy='' ; list2check=$listIni
623 while test $doCheck = 1 ; do
624 newList=''
625 for i in $list2check ; do
626 if test -f $MPIINCLUDEDIR/$i ; then
627 newInc=`grep '^ *include ' $MPIINCLUDEDIR/$i | \
628 sed -e 's/^ *include //' -e 's/\!.*$//' -e "s/'//g" -e 's/\"//g'`
629 if test $dBug = 1 ; then echo -n "checking $i : newInc='$newInc'" ; fi
630 for j in $newInc ; do
631 echo $listIni $list2copy $newList | grep "\<$j\>" > /dev/null 2>&1
632 outp=$?
633 if test $outp != 0 ; then
634 if test $dBug = 1 ; then echo -n " ; adding $j" ; fi
635 newList="$newList $j"
636 fi
637 done
638 if test $dBug = 1 ; then echo "" ; fi
639 fi
640 done
641 if test "x$newList" = x ; then doCheck=0
642 else list2check=$newList ; list2copy="$list2copy $newList"
643 fi
644 done
645 list2copy="$MPI_HEADER_FILES $list2copy"
646 if test $dBug = 1 ; then echo "list2copy='$list2copy'" ; fi
647
648 #----- create local mpi_headers dir if we have files to copy
649 mkListInc=`echo $list2copy | wc -w`
650 if test $mkListInc != 0 ; then
651 echo 'create local "./mpi_headers" dir'
652 mkdir -p ./mpi_headers
653 INCLUDES="-I./mpi_headers $INCLUDES"
654 mkListInc=1
655 fi
656 if test "x$LOCAL_MPI_HEADERS" != x ; then mkListInc=0 ; fi
657
658 #----- make local copy and update LOCAL_MPI_HEADERS (if not already set)
659 for i in $list2copy ; do
660 if test -f $MPIINCLUDEDIR/$i ; then
661 cp -p $MPIINCLUDEDIR/$i ./mpi_headers
662 if test $i = 'mpif.h' ; then
663 perl -i -pe 's/MPI_DISPLACEMENT_CURRENT=-1_8/MPI_DISPLACEMENT_CURRENT=-1/g' mpi_headers/mpif.h
664 fi
665 if test $mkListInc = 2 ; then
666 LOCAL_MPI_HEADERS="$LOCAL_MPI_HEADERS ./mpi_headers/$i"
667 fi
668 if test $mkListInc = 1 ; then
669 LOCAL_MPI_HEADERS="./mpi_headers/$i" ; mkListInc=2
670 fi
671 fi
672 done
673 else
674 echo "WARNING: MPIINCLUDEDIR='$MPIINCLUDEDIR' is not a directory"
675 echo "WARNING: => skip checking for MPI headers (no ./mpi_headers dir)"
676 # exit -1
677 fi
678 }
679
680 # Parse the package dependency information
681 get_pdepend_list() {
682
683 # strip the comments and then convert the dependency file into
684 # two arrays: PNAME, DNAME
685 cat $1 | sed -e 's/#.*$//g' \
686 | $AWK 'BEGIN{nn=-1;} (NF>0){ for(i=2;i<=NF;i++){nn++; print "PNAME_"nn"="$1"\nDNAME_"nn"="$i}} END{print "nname="nn}' \
687 > ./.pd_tmp
688 RETVAL=$?
689 if test ! "x${RETVAL}" = x0 ; then
690 echo "Error: unable to parse package dependencies -- please check PKG_DEPEND=\"$1\""
691 exit 1
692 fi
693 . ./.pd_tmp
694 rm -f ./.pd_tmp
695 }
696
697 # Build a CPP macro to automate calling C routines from FORTRAN
698 get_fortran_c_namemangling() {
699
700 #echo "FC_NAMEMANGLE = \"$FC_NAMEMANGLE\""
701 if test ! "x$FC_NAMEMANGLE" = x ; then
702 return 0
703 fi
704 echo " running: get_fortran_c_namemangling()" >> $LOGFILE
705
706 default_nm="#define FC_NAMEMANGLE(X) X ## _"
707
708 cat > genmake_test.c <<EOF
709 void tcall( char * string ) { tsub( string ); }
710 EOF
711 COMM="$CC $CFLAGS -c genmake_test.c"
712 echo ' '$COMM >> $LOGFILE
713 $COMM >> $LOGFILE 2>&1
714 RETVAL=$?
715 if test "x$RETVAL" != x0 ; then
716 FC_NAMEMANGLE=$default_nm
717 cat <<EOF>> $LOGFILE
718
719 WARNING: C test compile fails
720 WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
721 WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here
722 EOF
723 return 1
724 fi
725 c_tcall=`nm genmake_test.o 2>/dev/null | grep 'T ' | grep tcall | cut -d ' ' -f 3`
726 RETVAL=$?
727 if test "x$RETVAL" != x0 ; then
728 FC_NAMEMANGLE=$default_nm
729 cat <<EOF>> $LOGFILE
730
731 WARNING: The "nm" command failed.
732 WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
733 WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here
734 EOF
735 return 1
736 fi
737 cat > genmake_tcomp.$FS <<EOF
738 subroutine tcall( string )
739 character*(*) string
740 call tsub( string )
741 end
742 EOF
743 COMM="$FC $FFLAGS -c genmake_tcomp.$FS"
744 echo ' '$COMM >> $LOGFILE
745 $COMM >> $LOGFILE 2>&1
746 RETVAL=$?
747 if test "x$RETVAL" != x0 ; then
748 FC_NAMEMANGLE=$default_nm
749 cat <<EOF>> $LOGFILE
750
751 WARNING: FORTRAN test compile fails -- please see '$LOGFILE'
752 WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
753 WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here.
754 EOF
755 return 1
756 fi
757 f_tcall=`nm genmake_tcomp.o 2>/dev/null | grep 'T ' | grep tcall | cut -d ' ' -f 3`
758 RETVAL=$?
759 if test "x$RETVAL" != x0 ; then
760 FC_NAMEMANGLE=$default_nm
761 cat <<EOF>> $LOGFILE
762
763 WARNING: The "nm" command failed.
764 WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
765 WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here.
766 EOF
767 return 1
768 fi
769
770 c_a=`echo $c_tcall | sed -e 's|tcall|Y Y|' | cut -d ' ' -f 1 | sed -e 's|Y||'`
771 f_a=`echo $f_tcall | sed -e 's|tcall|Y Y|' | cut -d ' ' -f 1 | sed -e 's|Y||'`
772 c_b=`echo $c_tcall | sed -e 's|tcall|Y Y|' | cut -d ' ' -f 2 | sed -e 's|Y||'`
773 f_b=`echo $f_tcall | sed -e 's|tcall|Y Y|' | cut -d ' ' -f 2 | sed -e 's|Y||'`
774
775 nmangle="X"
776 if test "x$c_a" != "x$f_a" ; then
777 comm="echo x$f_a | sed -e 's|x$c_a||'"
778 a=`eval $comm`
779 nmangle="$a ## $nmangle"
780 fi
781 if test "x$c_b" != "x$f_b" ; then
782 comm="echo x$f_b | sed -e 's|x$c_b||'"
783 b=`eval $comm`
784 nmangle="$nmangle ## $b"
785 fi
786
787 FC_NAMEMANGLE="#define FC_NAMEMANGLE(X) $nmangle"
788
789 # cleanup the testing files
790 rm -f genmake_tcomp.* genmake_test.*
791
792 echo " --> set FC_NAMEMANGLE='$FC_NAMEMANGLE'" >> $LOGFILE
793 }
794
795 check_HAVE_CLOC() {
796 echo >> $LOGFILE
797 echo "running: check_HAVE_CLOC()" >> $LOGFILE
798 get_fortran_c_namemangling
799 cat <<EOF > genmake_tc_1.c
800 $FC_NAMEMANGLE
801 #include <stdio.h>
802 #include <stdlib.h>
803 #include <unistd.h>
804 #include <assert.h>
805 #include <sys/time.h>
806 void FC_NAMEMANGLE(cloc) ( double *curtim )
807 {
808 struct timeval tv1;
809 gettimeofday(&tv1 , (void *)NULL );
810 *curtim = (double)((tv1.tv_usec)+(tv1.tv_sec)*1.E6);
811 *curtim = *curtim/1.E6;
812 }
813 EOF
814 COMM="$CC $CFLAGS -c genmake_tc_1.c"
815 echo $COMM >> $LOGFILE
816 $COMM >> $LOGFILE 2>&1
817 RET_C=$?
818 cat <<EOF > genmake_tc_2.$FS
819 program hello
820 REAL*8 wtime
821 external cloc
822 call cloc(wtime)
823 print *," HELLO WORLD", wtime
824 end
825 EOF
826 COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"
827 echo $COMM >> $LOGFILE
828 $COMM >> $LOGFILE 2>&1
829 RET_F=$?
830 test -x ./genmake_tc && ./genmake_tc >> $LOGFILE 2>&1
831 RETVAL=$?
832 if test "x$RETVAL" = x0 ; then
833 HAVE_CLOC=t
834 fi
835 rm -f genmake_tc*
836 echo " --> set HAVE_CLOC='$HAVE_CLOC'" >> $LOGFILE
837 }
838
839 check_HAVE_SIGREG() {
840 if test ! "x$HAVE_SIGREG" = x ; then
841 return
842 fi
843 echo >> $LOGFILE
844 echo "running: check_HAVE_SIGREG()" >> $LOGFILE
845 get_fortran_c_namemangling
846 cat <<EOF > genmake_tc_1.c
847 $FC_NAMEMANGLE
848 #include <stdlib.h>
849 #include <stdio.h>
850 #include <signal.h>
851 #include <errno.h>
852 #include <ucontext.h>
853
854 int * ip;
855
856 static void killhandler(
857 unsigned int sn, siginfo_t si, struct ucontext *sc )
858 {
859 *ip = *ip + 1;
860 return;
861 }
862
863 void FC_NAMEMANGLE(sigreg) (int * aip)
864 {
865 struct sigaction s;
866 ip = aip;
867 s.sa_flags = SA_SIGINFO;
868 s.sa_sigaction = (void *)killhandler;
869 if(sigaction (SIGTERM,&s,(struct sigaction *)NULL)) {
870 printf("Sigaction returned error = %d\n", errno);
871 exit(0);
872 }
873 return;
874 }
875 EOF
876 COMM="$CC $CFLAGS -c genmake_tc_1.c"
877 echo $COMM >> $LOGFILE
878 $COMM >> $LOGFILE 2>&1
879 RET_C=$?
880 cat <<EOF > genmake_tc_2.$FS
881 program hello
882 integer anint
883 common /iv/ anint
884 external sigreg
885 call sigreg(anint)
886 end
887 EOF
888 cat genmake_tc_2.$FS >> $LOGFILE
889 COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"
890 echo $COMM >> $LOGFILE
891 $COMM >> $LOGFILE 2>&1
892 RETVAL=$?
893 if test "x$RETVAL" = x0 ; then
894 HAVE_SIGREG=t
895 fi
896 rm -f genmake_tc*
897 echo " --> set HAVE_SIGREG='$HAVE_SIGREG'" >> $LOGFILE
898 }
899
900 check_HAVE_SETRLSTK() {
901 if test ! "x$HAVE_SETRLSTK" = x ; then
902 return
903 fi
904 echo >> $LOGFILE
905 echo "running: check_HAVE_SETRLSTK()" >> $LOGFILE
906 get_fortran_c_namemangling
907 cat <<EOF > genmake_tc_1.c
908 $FC_NAMEMANGLE
909 #include <sys/time.h>
910 #include <sys/resource.h>
911 #include <unistd.h>
912 void FC_NAMEMANGLE(setrlstk) ()
913 {
914 struct rlimit rls;
915 rls.rlim_cur = RLIM_INFINITY;
916 rls.rlim_max = RLIM_INFINITY;
917 setrlimit(RLIMIT_STACK, &rls);
918 return;
919 }
920 EOF
921 COMM="$CC $CFLAGS -c genmake_tc_1.c"
922 echo $COMM >> $LOGFILE
923 $COMM >> $LOGFILE 2>&1
924 RET_C=$?
925 cat <<EOF > genmake_tc_2.$FS
926 program hello
927 external setrlstk
928 call setrlstk()
929 end
930 EOF
931 cat genmake_tc_2.$FS >> $LOGFILE
932 COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"
933 echo $COMM >> $LOGFILE
934 $COMM >> $LOGFILE 2>&1
935 RETVAL=$?
936 if test "x$RETVAL" = x0 ; then
937 HAVE_SETRLSTK=t
938 fi
939 rm -f genmake_tc*
940 echo " --> set HAVE_SETRLSTK='$HAVE_SETRLSTK'" >> $LOGFILE
941 }
942
943 check_HAVE_STAT() {
944 echo >> $LOGFILE
945 echo "running: check_HAVE_STAT()" >> $LOGFILE
946 get_fortran_c_namemangling
947 cat <<EOF > genmake_tc_1.c
948 $FC_NAMEMANGLE
949 #include <stdio.h>
950 #include <stdlib.h>
951 #include <unistd.h>
952 #include <sys/stat.h>
953 #include <sys/types.h>
954 void FC_NAMEMANGLE(tfsize) ( int *nbyte )
955 {
956 char name[512];
957 struct stat astat;
958
959 name[0] = 'a'; name[1] = '\0';
960 if (! stat(name, &astat))
961 *nbyte = (int)(astat.st_size);
962 else
963 *nbyte = -1;
964 }
965 EOF
966 COMM="$CC $CFLAGS -c genmake_tc_1.c"
967 echo $COMM >> $LOGFILE
968 $COMM >> genmake_tc.log 2>&1
969 RET_C=$?
970 cat <<EOF > genmake_tc_2.$FS
971 program hello
972 integer nbyte
973 call tfsize(nbyte)
974 print *," HELLO WORLD", nbyte
975 end
976 EOF
977 cat genmake_tc_2.$FS >> $LOGFILE
978 COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"
979 echo $COMM >> $LOGFILE
980 $COMM >> genmake_tc.log 2>&1
981 RETVAL=$?
982 if test "x$RETVAL" = x0 ; then
983 HAVE_STAT=t
984 fi
985 rm -f genmake_tc*
986 echo " --> set HAVE_STAT='$HAVE_STAT'" >> $LOGFILE
987 }
988
989 check_netcdf_libs() {
990 if test ! "x$SKIP_NETCDF_CHECK" = x ; then
991 return
992 fi
993 echo >> $LOGFILE
994 echo "running: check_netcdf_libs()" >> $LOGFILE
995 cat <<EOF > genmake_tnc.F
996 program fgennc
997 #include "netcdf.inc"
998 EOF
999 #if test ! "x$MPI" = x ; then
1000 # echo '#include "mpif.h"' >> genmake_tnc.F
1001 #fi
1002 cat <<EOF >> genmake_tnc.F
1003 integer iret, ncid, xid
1004 iret = nf_create('genmake_tnc.nc', NF_CLOBBER, ncid)
1005 IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret)
1006 iret = nf_def_dim(ncid, 'X', 11, xid)
1007 IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret)
1008 iret = nf_close(ncid)
1009 IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret)
1010 end
1011 EOF
1012 echo "=== genmake_tnc.F >>>" > genmake_tnc.log
1013 cat genmake_tnc.F >> genmake_tnc.log
1014 echo "<<< genmake_tnc.F ===" >> genmake_tnc.log
1015 RET_CPP=f
1016 COMM="cat genmake_tnc.F | $CPP $DEFINES $INCLUDES"
1017 echo "$COMM" >> genmake_tnc.log
1018 eval $COMM > genmake_tnc.$FS 2>/dev/null && RET_CPP=t
1019 if test "x$RET_CPP" = xf ; then
1020 echo " WARNING: CPP failed to pre-process the netcdf test." \
1021 >> genmake_tnc.log
1022 echo " Please check that \$INCLUDES is properly set." \
1023 >> genmake_tnc.log
1024 fi
1025 echo "$FC $FFLAGS $FOPTIM -c genmake_tnc.$FS \ " >> genmake_tnc.log
1026 echo " && $LINK $FFLAGS $FOPTIM -o genmake_tnc.o $LIBS" >> genmake_tnc.log
1027 $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS >> genmake_tnc.log 2>&1 \
1028 && $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS >> genmake_tnc.log 2>&1
1029 RET_COMPILE=$?
1030 cat genmake_tnc.log >> $LOGFILE
1031
1032 #EH3 Remove test program execution for machines that either disallow
1033 #EH3 execution or cannot support it (eg. cross-compilers)
1034 #EH3
1035 #EH3 test -x ./genmake_tnc && ./genmake_tnc >> genmake_tnc.log 2>&1
1036 #EH3 RETVAL=$?
1037 #EH3 if test "x$RET_COMPILE" = x0 -a "x$RETVAL" = x0 ; then
1038
1039 if test "x$RET_COMPILE" = x0 ; then
1040 HAVE_NETCDF=t
1041 echo "check_netcdf: successful" >> $LOGFILE
1042 else
1043 # try again with "-lnetcdf" added to the libs
1044 echo "==> try again with added '-lnetcdf'" > genmake_tnc.log
1045 echo "cat genmake_tnc.F | $CPP $DEFINES $INCLUDES > genmake_tnc.$FS \ " >> genmake_tnc.log
1046 echo " && $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS \ " >> genmake_tnc.log
1047 echo " && $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdf" >> genmake_tnc.log
1048 cat genmake_tnc.F | $CPP $DEFINES $INCLUDES > genmake_tnc.$FS 2>/dev/null \
1049 && $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS >> genmake_tnc.log 2>&1 \
1050 && $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdf >> genmake_tnc.log 2>&1
1051 RET_COMPILE=$?
1052 echo >> $LOGFILE
1053 cat genmake_tnc.log >> $LOGFILE
1054 if test "x$RET_COMPILE" = x0 ; then
1055 LIBS="$LIBS -lnetcdf"
1056 HAVE_NETCDF=t
1057 echo "check_netcdf: successful" >> $LOGFILE
1058 else
1059 # try again with "-lnetcdff" added to the libs
1060 echo "==> try again with added '-lnetcdff -lnetcdf'" > genmake_tnc.log
1061 echo "cat genmake_tnc.F | $CPP $DEFINES $INCLUDES > genmake_tnc.$FS \ " >> genmake_tnc.log
1062 echo " && $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS \ " >> genmake_tnc.log
1063 echo " && $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdf" >> genmake_tnc.log
1064 cat genmake_tnc.F | $CPP $DEFINES $INCLUDES > genmake_tnc.$FS 2>/dev/null \
1065 && $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS >> genmake_tnc.log 2>&1 \
1066 && $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdff -lnetcdf >> genmake_tnc.log 2>&1
1067 RET_COMPILE=$?
1068 echo >> $LOGFILE
1069 cat genmake_tnc.log >> $LOGFILE
1070 if test "x$RET_COMPILE" = x0 ; then
1071 LIBS="$LIBS -lnetcdff -lnetcdf"
1072 HAVE_NETCDF=t
1073 echo "check_netcdf: successful" >> $LOGFILE
1074 fi
1075 fi
1076 fi
1077 rm -f genmake_tnc*
1078 echo " --> set HAVE_NETCDF='$HAVE_NETCDF'" >> $LOGFILE
1079 }
1080
1081 check_lapack_libs() {
1082 if test ! "x$SKIP_LAPACK_CHECK" = x ; then
1083 return
1084 fi
1085 echo >> $LOGFILE
1086 echo "running: check_lapack_libs()" >> $LOGFILE
1087 cat <<EOF > genmake_tla.F
1088 program fgenla
1089 integer info
1090 integer ipiv( 2 )
1091 double precision ab( 4, 2 ), b( 2 )
1092 data ab / 0., 0., 1., 2., 0., 2., 1., 0. /
1093 data b / 1., 1. /
1094 call dgbsv( 2, 1, 1, 1, ab, 4, ipiv, b, 2, info )
1095 IF (info .NE. 0) write(*,*) 'Error:', info
1096 write(*,*) b
1097 end
1098 EOF
1099 echo "=== genmake_tla.F >>>" > genmake_tla.log
1100 cat genmake_tla.F >> genmake_tla.log
1101 echo "<<< genmake_tla.F ===" >> genmake_tla.log
1102 RET_CPP=f
1103 COMM="cat genmake_tla.F | $CPP $DEFINES $INCLUDES"
1104 echo "$COMM" >> genmake_tla.log
1105 eval $COMM > genmake_tla.$FS 2>/dev/null && RET_CPP=t
1106 if test "x$RET_CPP" = xf ; then
1107 echo " WARNING: CPP failed to pre-process the lapack test." \
1108 >> genmake_tla.log
1109 echo " Please check that \$INCLUDES is properly set." \
1110 >> genmake_tla.log
1111 fi
1112 echo "$FC $FFLAGS $FOPTIM -c genmake_tla.$FS \ " >> genmake_tla.log
1113 echo " && $LINK $FFLAGS $FOPTIM -o genmake_tla.o $LIBS" >> genmake_tla.log
1114 $FC $FFLAGS $FOPTIM -c genmake_tla.$FS >> genmake_tla.log 2>&1 \
1115 && $LINK $FFLAGS $FOPTIM -o genmake_tla genmake_tla.o $LIBS >> genmake_tla.log 2>&1
1116 RET_COMPILE=$?
1117 cat genmake_tla.log >> $LOGFILE
1118
1119 # test program execution not always possible (see check_netcdf_libs)
1120 #
1121 #test -x ./genmake_tla && ./genmake_tla >> genmake_tla.log 2>&1
1122 #RETVAL=$?
1123 #if test "x$RET_COMPILE" = x0 -a "x$RETVAL" = x0 ; then
1124
1125 if test "x$RET_COMPILE" = x0 ; then
1126 HAVE_LAPACK=t
1127 echo "check_lapack: successful" >> $LOGFILE
1128 else
1129 # try again with "-llapack" added to the libs
1130 echo "==> try again with added '-llapack'" > genmake_tla.log
1131 echo "cat genmake_tla.F | $CPP $DEFINES $INCLUDES > genmake_tla.$FS \ " >> genmake_tla.log
1132 echo " && $FC $FFLAGS $FOPTIM -c genmake_tla.$FS \ " >> genmake_tla.log
1133 echo " && $LINK $FFLAGS $FOPTIM -o genmake_tla genmake_tla.o $LIBS -llapack" >> genmake_tla.log
1134 cat genmake_tla.F | $CPP $DEFINES $INCLUDES > genmake_tla.$FS 2>/dev/null \
1135 && $FC $FFLAGS $FOPTIM -c genmake_tla.$FS >> genmake_tla.log 2>&1 \
1136 && $LINK $FFLAGS $FOPTIM -o genmake_tla genmake_tla.o $LIBS -llapack >> genmake_tla.log 2>&1
1137 RET_COMPILE=$?
1138 echo >> $LOGFILE
1139 cat genmake_tla.log >> $LOGFILE
1140 if test "x$RET_COMPILE" = x0 ; then
1141 LIBS="$LIBS -llapack"
1142 HAVE_LAPACK=t
1143 echo "check_lapack: successful" >> $LOGFILE
1144 else
1145 # try again with "-lf77blas -lcblas" added to the libs
1146 echo "==> try again with added '-llapack -lf77blas -lcblas'" > genmake_tla.log
1147 echo "cat genmake_tla.F | $CPP $DEFINES $INCLUDES > genmake_tla.$FS \ " >> genmake_tla.log
1148 echo " && $FC $FFLAGS $FOPTIM -c genmake_tla.$FS \ " >> genmake_tla.log
1149 echo " && $LINK $FFLAGS $FOPTIM -o genmake_tla genmake_tla.o $LIBS -llapack -lf77blas -lcblas" >> genmake_tla.log
1150 cat genmake_tla.F | $CPP $DEFINES $INCLUDES > genmake_tla.$FS 2>/dev/null \
1151 && $FC $FFLAGS $FOPTIM -c genmake_tla.$FS >> genmake_tla.log 2>&1 \
1152 && $LINK $FFLAGS $FOPTIM -o genmake_tla genmake_tla.o $LIBS -llapack -lf77blas -lcblas >> genmake_tla.log 2>&1
1153 RET_COMPILE=$?
1154 echo >> $LOGFILE
1155 cat genmake_tla.log >> $LOGFILE
1156 if test "x$RET_COMPILE" = x0 ; then
1157 LIBS="$LIBS -llapack -lf77blas -lcblas"
1158 HAVE_LAPACK=t
1159 echo "check_lapack: successful" >> $LOGFILE
1160 else
1161 # try again with "-latlas" added to the libs
1162 echo "==> try again with added '-llapack -lf77blas -lcblas -latlas'" > genmake_tla.log
1163 echo "cat genmake_tla.F | $CPP $DEFINES $INCLUDES > genmake_tla.$FS \ " >> genmake_tla.log
1164 echo " && $FC $FFLAGS $FOPTIM -c genmake_tla.$FS \ " >> genmake_tla.log
1165 echo " && $LINK $FFLAGS $FOPTIM -o genmake_tla genmake_tla.o $LIBS -llapack -lf77blas -lcblas -latlas" >> genmake_tla.log
1166 cat genmake_tla.F | $CPP $DEFINES $INCLUDES > genmake_tla.$FS 2>/dev/null \
1167 && $FC $FFLAGS $FOPTIM -c genmake_tla.$FS >> genmake_tla.log 2>&1 \
1168 && $LINK $FFLAGS $FOPTIM -o genmake_tla genmake_tla.o $LIBS -llapack -lf77blas -lcblas -latlas >> genmake_tla.log 2>&1
1169 RET_COMPILE=$?
1170 echo >> $LOGFILE
1171 cat genmake_tla.log >> $LOGFILE
1172 if test "x$RET_COMPILE" = x0 ; then
1173 LIBS="$LIBS -llapack -lf77blas -lcblas -latlas"
1174 HAVE_LAPACK=t
1175 echo "check_lapack: successful" >> $LOGFILE
1176 fi
1177 fi
1178 fi
1179 fi
1180 rm -f genmake_tla*
1181 echo " --> set HAVE_LAPACK='$HAVE_LAPACK'" >> $LOGFILE
1182 }
1183
1184 check_HAVE_FLUSH() {
1185 if test ! "x$SKIP_CHECK_FLUSH" = x ; then
1186 return
1187 fi
1188 echo >> $LOGFILE
1189 echo "running: check_HAVE_FLUSH()" >> $LOGFILE
1190 cat <<EOF > genmake_tflsh.$FS
1191 program fgenflsh
1192 integer iounit
1193 character*9 fname
1194 iounit = 26
1195 fname = 'tmp.tflsh'
1196 open(iounit,FILE=fname,STATUS='unknown')
1197 write(iounit,*) 'genmake_tflsh: hello'
1198 call flush(iounit)
1199 close(iounit)
1200 end
1201 EOF
1202 echo "=== genmake_tflsh.$FS >>>" > genmake_tflsh.log
1203 cat genmake_tflsh.$FS >> genmake_tflsh.log
1204 echo "<<< genmake_tflsh.$FS ===" >> genmake_tflsh.log
1205
1206 echo "$FC $FFLAGS $FOPTIM -c genmake_tflsh.$FS \ " >> genmake_tflsh.log
1207 echo " && $LINK $FFLAGS $FOPTIM -o genmake_tflsh.o $LIBS" >> genmake_tflsh.log
1208 $FC $FFLAGS $FOPTIM -c genmake_tflsh.$FS >> genmake_tflsh.log 2>&1 \
1209 && $LINK $FFLAGS $FOPTIM -o genmake_tflsh genmake_tflsh.o $LIBS >> genmake_tflsh.log 2>&1
1210 RET_COMPILE=$?
1211
1212 if test "x$RET_COMPILE" = x0 ; then
1213 HAVE_FLUSH=t
1214 #cat genmake_tflsh.log >> $LOGFILE
1215 echo " check_HAVE_FLUSH: successful" >> $LOGFILE
1216 else
1217 HAVE_FLUSH=f
1218 cat genmake_tflsh.log >> $LOGFILE
1219 fi
1220 rm -f genmake_tflsh*
1221 echo " --> set HAVE_FLUSH='$HAVE_FLUSH'" >> $LOGFILE
1222 }
1223
1224 ###############################################################################
1225 # Sequential part of script starts here
1226 ###############################################################################
1227
1228 # Set defaults here
1229 COMMANDL="$0 $@"
1230
1231 PLATFORM=
1232 LN=
1233 S64=
1234 KPP=
1235 #FC=
1236 #CC=gcc
1237 #CPP=
1238 LINK=
1239 DEFINES=
1240 PACKAGES=
1241 ENABLE=
1242 DISABLE=
1243 # MAKEFILE=
1244 # MAKEDEPEND=
1245 PKG_DEPEND=
1246 PKG_GROUPS=
1247 DUMPSTATE=f
1248 OPTFILE=
1249 INCLUDES="-I. $INCLUDES"
1250 FFLAGS=
1251 FOPTIM=
1252 FEXTRAFLAGS=
1253 USE_EXTENDED_SRC=
1254 EXTENDED_SRC_FLAG=
1255 GET_FC_VERSION=
1256 CFLAGS=
1257 KFLAGS1=
1258 KFLAGS2=
1259 #LDADD=
1260 LIBS=
1261 KPPFILES=
1262 NOOPTFILES=
1263 NOOPTFLAGS=
1264 MPI=
1265 MPIPATH=
1266 OMP=
1267 OMPFLAG=
1268 USE_R4=
1269 TS=
1270 PAPIS=
1271 PCLS=
1272 FOOLAD=
1273 PAPI=
1274 PCL=
1275 HPMT=
1276 GSL=
1277 DEVEL=
1278 HAVE_TEST_L=
1279
1280 # comment this line out to enable lapack test
1281 SKIP_LAPACK_CHECK=t
1282
1283 # DEFINES checked by test compilation or command-line
1284 HAVE_SYSTEM=
1285 HAVE_FDATE=
1286 FC_NAMEMANGLE=
1287 HAVE_CLOC=
1288 # HAVE_SETRLSTK=
1289 HAVE_STAT=
1290 HAVE_NETCDF=
1291 HAVE_ETIME=
1292 IGNORE_TIME=
1293 HAVE_LAPACK=
1294 HAVE_FLUSH=
1295
1296 MODS=
1297 TOOLSDIR=
1298 SOURCEDIRS=
1299 INCLUDEDIRS=
1300 STANDARDDIRS="USE_THE_DEFAULT"
1301
1302 #- local config file
1303 gm_local="genmake_local"
1304
1305 G2ARGS=
1306 BASH=
1307 PWD=`pwd`
1308 test "x$MAKE" = x && MAKE=make
1309 test "x$AWK" = x && AWK=awk
1310 EMBED_SRC=
1311 THISHOST=`hostname`
1312 THISCWD=`pwd`
1313 THISDATE=`date`
1314 THISUSER=`echo $USER`
1315 THISVER=
1316 MACHINE=`uname -a`
1317 EXECUTABLE=
1318 EXEHOOK=
1319 EXEDIR=
1320 IEEE=
1321 if test "x$MITGCM_IEEE" != x ; then
1322 IEEE=$MITGCM_IEEE
1323 fi
1324 FS=
1325 FS90=
1326
1327 AUTODIFF_PKG_USED=f
1328 AD_OPTFILE=
1329 TAF=
1330 AD_TAF_FLAGS=
1331 FTL_TAF_FLAGS=
1332 SVD_TAF_FLAGS=
1333 TAF_EXTRA=
1334 TAMC=
1335 AD_TAMC_FLAGS=
1336 FTL_TAF_FLAGS=
1337 SVD_TAMC_FLAGS=
1338 TAMC_EXTRA=
1339
1340 DIVA=
1341 MPIINCLUDEDIR=
1342 MPI_HEADER_FILES=
1343 LOCAL_MPI_HEADERS=
1344
1345 # The following state can be set directly by command-line switches
1346 gm_s1="ROOTDIR STANDARDDIRS MODS PKG_DEPEND PKG_GROUPS DISABLE ENABLE"
1347 gm_s2="PLATFORM OPTFILE MAKE MAKEFILE MAKEDEPEND FC CC MPI OMP USE_R4"
1348 gm_s3="FEXTRAFLAGS IEEE DEVEL GSL TS PAPIS PCLS PAPI PCL HPMT DUMPSTATE"
1349
1350 # The following state is not directly set by command-line switches
1351 gm_s4="LN S64 LINK PACKAGES INCLUDES FFLAGS FOPTIM"
1352 gm_s5="CFLAGS LIBS KPP KFLAGS1 KFLAGS2 KPPFILES NOOPTFILES NOOPTFLAGS"
1353 gm_s6="PWD TOOLSDIR SOURCEDIRS INCLUDEDIRS EXEDIR EXECUTABLE EXEHOOK"
1354 gm_s7="THISHOST THISUSER THISDATE THISVER MACHINE FC_NAMEMANGLE"
1355 gm_s8="HAVE_NETCDF HAVE_SYSTEM HAVE_FDATE HAVE_ETIME HAVE_LAPACK HAVE_FLUSH"
1356
1357 # The following are all related to adjoint/tangent-linear stuff
1358 gm_s10="AUTODIFF_PKG_USED AD_OPTFILE TAMC TAF AD_TAMC_FLAGS AD_TAF_FLAGS"
1359 gm_s11="FTL_TAMC_FLAGS FTL_TAF_FLAGS SVD_TAMC_FLAGS SVD_TAF_FLAGS"
1360 gm_s12="TAF_EXTRA TAMC_EXTRA DIVA MPIINCLUDEDIR MPI_HEADER_FILES"
1361
1362 gm_state="COMMANDL $gm_s1 $gm_s2 $gm_s3 $gm_s4 $gm_s5 $gm_s6 $gm_s7 $gm_s8"
1363 gm_state="$gm_state $gm_s10 $gm_s11 $gm_s12"
1364
1365 cat <<EOF
1366
1367 GENMAKE :
1368
1369 A program for GENerating MAKEfiles for the MITgcm project.
1370 For a quick list of options, use "genmake2 -h"
1371 or for more detail see the Developer's HOWTO manual at:
1372 http://mitgcm.org/public/docs.html
1373
1374 EOF
1375
1376 LOGFILE="genmake.log"
1377 #- clean-up previous genmake logfiles:
1378 rm -f genmake_state genmake_*optfile $LOGFILE
1379
1380 echo "=== Processing options files and arguments ==="
1381
1382 #echo "$0::$1:$2:$3:$4:$5:$6:$7:"
1383 #parse_options
1384 ac_prev=
1385 for ac_option in "$@" ; do
1386
1387 G2ARGS="$G2ARGS \"$ac_option\""
1388
1389 # If the previous option needs an argument, assign it.
1390 if test -n "$ac_prev"; then
1391 eval "$ac_prev=\$ac_option"
1392 ac_prev=
1393 continue
1394 fi
1395
1396 ac_optarg=`expr "x$ac_option" : 'x[^=]*=\(.*\)'`
1397
1398 case $ac_option in
1399
1400 -help | --help | -h | --h)
1401 usage ;;
1402
1403 -nooptfile | --nooptfile)
1404 OPTFILE="NONE" ;;
1405 -optfile | --optfile | -of | --of)
1406 ac_prev=OPTFILE ;;
1407 -optfile=* | --optfile=* | -of=* | --of=*)
1408 OPTFILE=$ac_optarg ;;
1409
1410 -adoptfile | --adoptfile | -adof | --adof)
1411 ac_prev=AD_OPTFILE ;;
1412 -adoptfile=* | --adoptfile=* | -adof=* | --adof=*)
1413 AD_OPTFILE=$ac_optarg ;;
1414
1415 -pdepend | --pdepend)
1416 ac_prev=PKG_DEPEND ;;
1417 -pdepend=* | --pdepend=*)
1418 PKG_DEPEND=$ac_optarg ;;
1419
1420 -pgroups | --pgroups)
1421 ac_prev=PKG_GROUPS ;;
1422 -pgroups=* | --pgroups=*)
1423 PKG_GROUPS=$ac_optarg ;;
1424
1425 -make | --make | -m | --m)
1426 ac_prev=MAKE ;;
1427 -make=* | --make=* | -m=* | --m=*)
1428 MAKE=$ac_optarg ;;
1429
1430 -bash | --bash)
1431 ac_prev=BASH ;;
1432 -bash=* | --bash=*)
1433 BASH=$ac_optarg ;;
1434
1435 -makedepend | --makedepend | -md | --md)
1436 ac_prev=MAKEDEPEND ;;
1437 -makedepend=* | --makedepend=* | -md=* | --md=*)
1438 MAKEDEPEND=$ac_optarg ;;
1439
1440 -makefile | --makefile | -mf | --mf)
1441 ac_prev=MAKEFILE ;;
1442 -makefile=* | --makefile=* | -mf=* | --mf=*)
1443 MAKEFILE=$ac_optarg ;;
1444
1445 -platform | --platform | -pl | --pl | -platform=* | --platform=* | -pl=* | --pl=*)
1446 echo "ERROR: The platform option has been removed. Please specify"
1447 echo " the build options using the \"optfile\" mechanism."
1448 echo
1449 usage
1450 ;;
1451
1452 -rootdir | --rootdir | -rd | --rd)
1453 ac_prev=ROOTDIR ;;
1454 -rootdir=* | --rootdir=* | -rd=* | --rd=*)
1455 ROOTDIR=$ac_optarg ;;
1456
1457 -mods | --mods | -mo | --mo)
1458 ac_prev=MODS ;;
1459 -mods=* | --mods=* | -mo=* | --mo=*)
1460 MODS=$ac_optarg ;;
1461
1462 -disable | --disable)
1463 ac_prev=DISABLE ;;
1464 -disable=* | --disable=*)
1465 DISABLE=$ac_optarg ;;
1466
1467 -enable | --enable)
1468 ac_prev=ENABLE ;;
1469 -enable=* | --enable=*)
1470 ENABLE=$ac_optarg ;;
1471
1472 -standarddirs | --standarddirs)
1473 ac_prev=STANDARDDIRS ;;
1474 -standarddirs=* | --standarddirs=*)
1475 STANDARDDIRS=$ac_optarg ;;
1476
1477 # -cpp | --cpp)
1478 # ac_prev=cpp ;;
1479 # -cpp=* | --cpp=*)
1480 # CPP=$ac_optarg ;;
1481
1482 -cc | --cc)
1483 ac_prev=CC ;;
1484 -cc=* | --cc=*)
1485 CC=$ac_optarg ;;
1486
1487 -fortran | --fortran | -fc | --fc)
1488 ac_prev=FC ;;
1489 -fc=* | --fc=*)
1490 FC=$ac_optarg ;;
1491
1492 -fs | --fs)
1493 ac_prev=FS ;;
1494 -fs=* | --fs=*)
1495 FS=$ac_optarg ;;
1496
1497 -fs90 | --fs90)
1498 ac_prev=FS90 ;;
1499 -fs90=* | --fs90=*)
1500 FS90=$ac_optarg ;;
1501
1502 -use_real4 | -use_r4 | -ur4 | --use_real4 | --use_r4 | --ur4 )
1503 USE_R4=true ;;
1504
1505 -ieee | --ieee)
1506 IEEE=true ;;
1507 -noieee | --noieee)
1508 echo "Warning: ignore option '$ac_option' (default is already without '-ieee')" ;;
1509 -devel | --devel)
1510 IEEE=true ; DEVEL=true ;;
1511 -gsl | --gsl)
1512 GSL=true ;;
1513
1514 -ts | --ts)
1515 TS=true ;;
1516 -papis | --papis)
1517 PAPIS=true ;;
1518 -pcls | --pcls)
1519 PCLS=true ;;
1520 -foolad | --foolad)
1521 FOOLAD=true ;;
1522 -papi | --papi)
1523 PAPI=true ;;
1524 -pcl | --pcl)
1525 PCL=true ;;
1526 -hpmt | --hpmt)
1527 HPMT=true ;;
1528
1529 -mpi | --mpi)
1530 MPI=true ;;
1531 -mpi=* | --mpi=*)
1532 MPIPATH=$ac_optarg
1533 MPI=true ;;
1534
1535 -omp | --omp)
1536 OMP=true ;;
1537 -omp=* | --omp=*)
1538 OMPFLAG=$ac_optarg
1539 OMP=true ;;
1540
1541 -ds | --ds)
1542 DUMPSTATE=t ;;
1543
1544 -extra_flag | --extra_flag)
1545 ac_prev=FEXTRAFLAGS ;;
1546 -extra_flag=* | --extra_flag=*)
1547 FEXTRAFLAGS=$ac_optarg ;;
1548
1549 -taf_extra | --taf_extra)
1550 ac_prev=TAF_EXTRA ;;
1551 -taf_extra=* | --taf_extra=*)
1552 TAF_EXTRA=$ac_optarg ;;
1553
1554 -tamc_extra | --tamc_extra)
1555 ac_prev=TAMC_EXTRA ;;
1556 -tamc_extra=* | --tamc_extra=*)
1557 TAMC_EXTRA=$ac_optarg ;;
1558
1559 -ignoretime | -ignore_time | --ignoretime | --ignore_time)
1560 IGNORE_TIME="-DIGNORE_TIME" ;;
1561
1562 -es | --es | -embed-source | --embed-source)
1563 EMBED_SRC=t ;;
1564
1565 -*)
1566 echo "Error: unrecognized option: "$ac_option
1567 usage
1568 ;;
1569
1570 *)
1571 echo "Error: unrecognized argument: "$ac_option
1572 usage
1573 ;;
1574
1575 esac
1576
1577 done
1578
1579 printf " getting local config information: "
1580 if test -f $gm_local ; then
1581 echo "using $gm_local"
1582 . $gm_local
1583 else
1584 echo "none found"
1585 fi
1586
1587 if test -f ./.genmakerc ; then
1588 echo
1589 echo "WARNING: genmake2 has detected a copy of the old-style \"./.genmakerc\""
1590 echo " file. This file format is no longer supported. For directions on"
1591 echo " how to setup and use the new \"genmake2\" script, please see:"
1592 echo " http://mitgcm.org/public/devel_HOWTO/"
1593 echo " and send an email to MITgcm-support@mitgcm.org if you need help."
1594 echo "WARNING: ignore \"./.genmakerc\" and continue."
1595 echo
1596 fi
1597
1598 # Find the MITgcm ${ROOTDIR}
1599 if test "x${ROOTDIR}" = x ; then
1600 tmp=`echo $PWD | sed -e 's/\// /g' | $AWK '{print $NR}'`
1601 if test "x$tmp" = "xbin" -a -d ../model -a -d ../eesupp -a -d ../pkg ; then
1602 ROOTDIR=".."
1603 else
1604 for d in . .. ../.. ../../.. ../../../.. ../../../../.. ; do
1605 if [ -d "$d/model" -a -d "$d/eesupp" -a -d "$d/pkg" ]; then
1606 ROOTDIR=$d
1607 printf "Warning: ROOTDIR was not specified ;"
1608 echo " try using a local copy of MITgcm found at \"$ROOTDIR\""
1609 break
1610 fi
1611 done
1612 fi
1613 fi
1614 if test "x${ROOTDIR}" = x ; then
1615 echo "Error: Cannot determine ROOTDIR for MITgcm code."
1616 echo " Please specify a ROOTDIR using either an options "
1617 echo " file or a command-line option."
1618 exit 1
1619 fi
1620 if test ! -d ${ROOTDIR} ; then
1621 echo "Error: the specified ROOTDIR (\"$ROOTDIR\") does not exist!"
1622 exit 1
1623 fi
1624
1625 # Find the MITgcm ${THISVER}
1626 version_file="${ROOTDIR}/doc/tag-index"
1627 if test -f $version_file ; then
1628 THISVER=`$AWK '/^checkpoint/{print $1; exit}' $version_file`
1629 #- remove ./BUILD_INFO.h file if older than version_file
1630 if test -f ./BUILD_INFO.h -a ./BUILD_INFO.h -ot $version_file ; then
1631 echo " remove ./BUILD_INFO.h (older than ${version_file})"
1632 rm -f ./BUILD_INFO.h
1633 fi
1634 fi
1635
1636 if test "x$MAKEFILE" = x ; then
1637 MAKEFILE="Makefile"
1638 fi
1639
1640 echo " getting OPTFILE information:"
1641 if test "x${OPTFILE}" = x ; then
1642 if test "x$MITGCM_OF" = x ; then
1643 echo "Warning: no OPTFILE specified so we'll look for possible settings"
1644 printf "\n=== Searching for possible settings for OPTFILE ===\n"
1645 find_possible_optfile
1646 else
1647 OPTFILE=$MITGCM_OF
1648 fi
1649 fi
1650 if test "x$OPTFILE" != xNONE ; then
1651 if test -f "$OPTFILE" -a -r "$OPTFILE" ; then
1652 echo " using OPTFILE=\"$OPTFILE\""
1653 . "$OPTFILE"
1654 RETVAL=$?
1655 if test "x$RETVAL" != x0 ; then
1656 printf "Error: failed to source OPTFILE \"$OPTFILE\""
1657 echo "--please check that variable syntax is bash-compatible"
1658 exit 1
1659 fi
1660 if test "x$DUMPSTATE" = xt ; then
1661 cp -f $OPTFILE "genmake_optfile"
1662 fi
1663 else
1664 echo "Error: can't read OPTFILE=\"$OPTFILE\""
1665 exit 1
1666 fi
1667 fi
1668
1669 echo " getting AD_OPTFILE information:"
1670 if test "x${AD_OPTFILE}" = x ; then
1671 if test "x$MITGCM_AD_OF" = x ; then
1672 AD_OPTFILE=$ROOTDIR/tools/adjoint_options/adjoint_default
1673 else
1674 AD_OPTFILE=$MITGCM_AD_OF
1675 fi
1676 fi
1677 if test "x${AD_OPTFILE}" != xNONE ; then
1678 if test -f "$AD_OPTFILE" -a -r "$AD_OPTFILE" ; then
1679 echo " using AD_OPTFILE=\"$AD_OPTFILE\""
1680 . "$AD_OPTFILE"
1681 RETVAL=$?
1682 if test "x$RETVAL" != x0 ; then
1683 printf "Error: failed to source AD_OPTFILE \"$AD_OPTFILE\""
1684 echo "--please check that variable syntax is bash-compatible"
1685 exit 1
1686 fi
1687 if test "x$DUMPSTATE" = xt ; then
1688 cp -f $AD_OPTFILE "genmake_ad_optfile"
1689 fi
1690 else
1691 echo "Error: can't read AD_OPTFILE=\"$AD_OPTFILE\""
1692 exit 1
1693 fi
1694 fi
1695
1696 #====================================================================
1697 # Set default values if not set by the optfile
1698 #
1699 # Check that FC, CC, LINK, CPP, S64, LN, and MAKE are defined. If not,
1700 # either set defaults or complain and abort!
1701 if test ! "x$BASH" = x ; then
1702 # add a trailing space so that it works within the Makefile syntax (see below)
1703 BASH="$BASH "
1704 fi
1705 if test "x$FC" = x ; then
1706 cat <<EOF 1>&2
1707
1708 Error: no Fortran compiler: please specify using one of the following:
1709 1) within the options file ("FC=...") as specified by "-of=OPTFILE"
1710 2) the "-fc=XXX" command-line option
1711 3) the "./genmake_local" file
1712 EOF
1713 exit 1
1714 fi
1715 if test "x$GET_FC_VERSION" != x ; then
1716 echo "Get compiler version using: $FC $GET_FC_VERSION" >> $LOGFILE
1717 ff=`echo $FC | sed 's/ .*//'` ; xx=`echo $ff | sed 's/^./& /' | sed 's/ .*//'`
1718 if test $xx != '/' ; then which $ff >> $LOGFILE ; fi
1719 $FC $GET_FC_VERSION > genmake_fc_vers1 2> genmake_fc_vers2
1720 if test -s genmake_fc_vers1 ; then
1721 cat genmake_fc_vers1 >> $LOGFILE
1722 else
1723 cat genmake_fc_vers2 >> $LOGFILE
1724 fi
1725 echo "<-- compiler version ----" >> $LOGFILE
1726 rm -f genmake_fc_vers1 genmake_fc_vers2
1727 fi
1728
1729 if test "x$CC" = x ; then
1730 look_for_C_compilers
1731 fi
1732
1733 if test "x$LINK" = x ; then
1734 LINK=$FC
1735 fi
1736 if test "x$MAKE" = x ; then
1737 MAKE="make"
1738 fi
1739 if test "x$CPP" = x ; then
1740 CPP="cpp -traditional -P"
1741 fi
1742 #EH3 === UGLY ===
1743 # The following is an ugly little hack to check for $CPP in /lib/ and
1744 # it should eventually be replaced with a more general function that
1745 # searches a combo of the user's path and a list of "usual suspects"
1746 # to find the correct location for binaries such as $CPP.
1747 for i in " " "/lib/" ; do
1748 echo "#define A a" | $i$CPP > test_cpp 2>&1 && CPP=$i$CPP
1749 done
1750 #EH3 === UGLY ===
1751 echo "#define A a" | $CPP > test_cpp 2>&1
1752 RETVAL=$?
1753 if test "x$RETVAL" != x0 ; then
1754 cat <<EOF 1>&2
1755
1756 Error: C pre-processor "$CPP" failed the test case: please specify using:
1757
1758 1) within the options file ("CPP=...") as specified by "-of=OPTFILE"
1759 2) the "./genmake_local" file
1760 3) with the CPP environment variable
1761
1762 EOF
1763 exit 1
1764 else
1765 rm -f test_cpp
1766 fi
1767
1768 look_for_makedepend
1769
1770 # Check that soft-link command is set and usable
1771 if test "x$LN" = x ; then
1772 LN="ln -s"
1773 fi
1774 echo "test" > genmake_test_ln
1775 $LN genmake_test_ln genmake_tlink
1776 RETVAL=$?
1777 if test "x$RETVAL" != x0 ; then
1778 cat <<EOF 1>&2
1779
1780 Error: The command "$LN" failed -- please specify a working soft-link
1781 command in the optfile.
1782
1783 EOF
1784 exit 1
1785 fi
1786 test -L genmake_tlink > /dev/null 2>&1
1787 RETVAL=$?
1788 if test "x$RETVAL" = x0 ; then
1789 HAVE_TEST_L=t
1790 fi
1791 rm -f genmake_test_ln genmake_tlink
1792
1793 # Check for broken *.F/*.f handling and fix if possible
1794 check_for_broken_Ff
1795
1796 if test ! "x$MPI" = x ; then
1797 echo " Turning on MPI cpp macros"
1798 DEFINES="$DEFINES -DALLOW_USE_MPI"
1799 #- To compile code older than checkpoint63s (2012/09/05), un-comment the following line:
1800 # DEFINES="$DEFINES -DALWAYS_USE_MPI"
1801 fi
1802 if test ! "x$OMP" = x ; then
1803 echo " Add OMPFLAG and turn on OpenMP cpp macros"
1804 FFLAGS="$FFLAGS $OMPFLAG"
1805 F90FLAGS="$F90FLAGS $OMPFLAG"
1806 DEFINES="$DEFINES -DUSE_OMP_THREADING"
1807 fi
1808
1809 if test ! "x$USE_R4" = x ; then
1810 echo " Turning on LET_RS_BE_REAL4 cpp flag"
1811 DEFINES="$DEFINES -DLET_RS_BE_REAL4"
1812 fi
1813
1814 if test ! "x$TS" = x ; then
1815 echo " Turning on timing per timestep"
1816 if test ! "x$FOOLAD" = x ; then
1817 DEFINES="$DEFINES -DTIME_PER_TIMESTEP_SFP"
1818 else
1819 DEFINES="$DEFINES -DTIME_PER_TIMESTEP"
1820 fi
1821 PACKAGES="$PACKAGES showflops"
1822 fi
1823 if test ! "x$PAPIS" = x ; then
1824 echo " Turning on PAPI flop summary per timestep"
1825 echo " Please make sure PAPIINC, PAPILIB are defined"
1826 if test ! "x$FOOLAD" = x ; then
1827 DEFINES="$DEFINES -DUSE_PAPI_FLOPS_SFP"
1828 else
1829 DEFINES="$DEFINES -DUSE_PAPI_FLOPS"
1830 fi
1831 INCLUDES="$INCLUDES $PAPIINC"
1832 LIBS="$LIBS $PAPILIB"
1833 PACKAGES="$PACKAGES showflops"
1834 fi
1835 if test ! "x$PCLS" = x ; then
1836 echo " Turning on PCL counter summary per timestep"
1837 echo " Please make sure PCLINC, PCLLIB are defined"
1838 if test ! "x$FOOLAD" = x ; then
1839 DEFINES="$DEFINES -DUSE_PCL_FLOPS_SFP"
1840 else
1841 DEFINES="$DEFINES -DUSE_PCL_FLOPS"
1842 fi
1843 INCLUDES="$INCLUDES $PCLINC"
1844 LIBS="$LIBS $PCLLIB"
1845 PACKAGES="$PACKAGES showflops"
1846 fi
1847 if test ! "x$PAPI" = x ; then
1848 if test ! "x$PAPIS" = x ; then
1849 echo " PAPI performance analysis and flop summary per timestep cannot co-exist!"
1850 echo " Sticking with PAPI flop summary per timestep!"
1851 else
1852 echo " Turning on performance analysis with PAPI"
1853 echo " Please make sure PAPIINC, PAPILIB are defined"
1854 DEFINES="$DEFINES -DUSE_PAPI"
1855 INCLUDES="$INCLUDES $PAPIINC"
1856 LIBS="$LIBS $PAPILIB"
1857 fi
1858 fi
1859 if test ! "x$PCL" = x ; then
1860 if test ! "x$PCLS" = x ; then
1861 echo " PCL performance analysis and flop summary per timestep cannot co-exist!"
1862 echo " Sticking with PCL flop summary per timestep!"
1863 else
1864 echo " Turning on performance analysis with PCL"
1865 echo " Please make sure PCLINC, PCLLIB are defined"
1866 DEFINES="$DEFINES -DUSE_PCL"
1867 INCLUDES="$INCLUDES $PCLINC"
1868 LIBS="$LIBS $PCLLIB"
1869 fi
1870 fi
1871 if test ! "x$HPMT" = x ; then
1872 if test ! "x$PAPI" = x ; then
1873 echo " PAPI and the HPM Toolkit cannot co-exist!"
1874 echo " Sticking with PAPI!"
1875 else
1876 if test ! "x$PCL" = x ; then
1877 echo " PCL and the HPM Toolkit cannot co-exist!"
1878 echo " Sticking with PCL!"
1879 else
1880 echo " Turning on performance analysis with the HPM Toolkit"
1881 echo " Please make sure HPMTINC, HPMTLIB are defined"
1882 DEFINES="$DEFINES -DUSE_LIBHPM"
1883 INCLUDES="$INCLUDES $HPMTINC"
1884 LIBS="$LIBS $HPMTLIB"
1885 fi
1886 fi
1887 fi
1888 if test ! "x$GSL" = x ; then
1889 echo " Turning on use of GSL to control floating point calculations"
1890 echo " Please make sure GSLINC, GSLLIB are defined"
1891 DEFINES="$DEFINES -DUSE_GSL_IEEE"
1892 INCLUDES="$INCLUDES $GSLINC"
1893 LIBS="$LIBS $GSLLIB"
1894 fi
1895 #- if USE_EXTENDED_SRC is set, add EXTENDED_SRC_FLAG to FFLAGS :
1896 if test ! "x$USE_EXTENDED_SRC" = x ; then
1897 FFLAGS="$FFLAGS $EXTENDED_SRC_FLAG"
1898 F90FIXEDFORMAT="$F90FIXEDFORMAT $EXTENDED_SRC_FLAG"
1899 fi
1900
1901 printf "\n=== Checking system libraries ===\n"
1902 printf " Do we have the system() command using $FC... "
1903 cat > genmake_tcomp.$FS <<EOF
1904 program hello
1905 call system('echo hi')
1906 end
1907 EOF
1908 $FC $FFLAGS -o genmake_tcomp genmake_tcomp.$FS > genmake_tcomp.log 2>&1
1909 RETVAL=$?
1910 if test "x$RETVAL" = x0 ; then
1911 HAVE_SYSTEM=t
1912 DEFINES="$DEFINES -DHAVE_SYSTEM"
1913 echo "yes"
1914 else
1915 HAVE_SYSTEM=
1916 echo "no"
1917 fi
1918 rm -f genmake_tcomp*
1919
1920 printf " Do we have the fdate() command using $FC... "
1921 cat > genmake_tcomp.$FS <<EOF
1922 program hello
1923 CHARACTER*(128) string
1924 string = ' '
1925 call fdate( string )
1926 print *, string
1927 end
1928 EOF
1929 $FC $FFLAGS -o genmake_tcomp genmake_tcomp.$FS > genmake_tcomp.log 2>&1
1930 RETVAL=$?
1931 if test "x$RETVAL" = x0 ; then
1932 HAVE_FDATE=t
1933 DEFINES="$DEFINES -DHAVE_FDATE"
1934 echo "yes"
1935 else
1936 HAVE_FDATE=
1937 echo "no"
1938 fi
1939 rm -f genmake_tcomp*
1940
1941 printf " Do we have the etime() command using $FC... "
1942 cat > genmake_tcomp.$FS <<EOF
1943 program hello
1944 REAL*4 ACTUAL, TARRAY(2)
1945 EXTERNAL ETIME
1946 REAL*4 ETIME
1947 actual = etime( tarray )
1948 print *, tarray
1949 end
1950 EOF
1951 $FC $FFLAGS -o genmake_tcomp genmake_tcomp.$FS > genmake_tcomp.log 2>&1
1952 RETVAL=$?
1953 if test "x$RETVAL" = x0 ; then
1954 HAVE_ETIME=t
1955 DEFINES="$DEFINES -DHAVE_ETIME"
1956 echo "yes"
1957 else
1958 HAVE_ETIME=
1959 echo "no"
1960 fi
1961 rm -f genmake_tcomp*
1962
1963 printf " Can we call simple C routines (here, \"cloc()\") using $FC... "
1964 check_HAVE_CLOC
1965 if test "x$HAVE_CLOC" != x ; then
1966 DEFINES="$DEFINES -DHAVE_CLOC"
1967 echo "yes"
1968 else
1969 echo "no"
1970 if test "x$EMBED_SRC" = xt ; then
1971 echo " WARNING: you requested file embedding but it has"
1972 echo " been disabled since C code cannot be called"
1973 EMBED_SRC=
1974 fi
1975 fi
1976 rm -f genmake_t*
1977
1978 printf " Can we unlimit the stack size using $FC... "
1979 check_HAVE_SETRLSTK
1980 if test "x$HAVE_SETRLSTK" = xt ; then
1981 DEFINES="$DEFINES -DHAVE_SETRLSTK"
1982 echo "yes"
1983 else
1984 echo "no"
1985 fi
1986 rm -f genmake_t*
1987
1988 printf " Can we register a signal handler using $FC... "
1989 check_HAVE_SIGREG
1990 if test "x$HAVE_SIGREG" = xt ; then
1991 DEFINES="$DEFINES -DHAVE_SIGREG"
1992 echo "yes"
1993 else
1994 echo "no"
1995 fi
1996 rm -f genmake_t*
1997
1998 printf " Can we use stat() through C calls... "
1999 check_HAVE_STAT
2000 if test "x$HAVE_STAT" != x ; then
2001 DEFINES="$DEFINES -DHAVE_STAT"
2002 echo "yes"
2003 else
2004 echo "no"
2005 fi
2006 rm -f genmake_t*
2007
2008 printf " Can we create NetCDF-enabled binaries... "
2009 check_netcdf_libs
2010 if test "x$HAVE_NETCDF" != x ; then
2011 DEFINES="$DEFINES -DHAVE_NETCDF"
2012 echo "yes"
2013 else
2014 echo "no"
2015 fi
2016
2017 printf " Can we create LAPACK-enabled binaries... "
2018 check_lapack_libs
2019 if test "x$HAVE_LAPACK" != x ; then
2020 DEFINES="$DEFINES -DHAVE_LAPACK"
2021 echo "yes"
2022 else
2023 echo "no"
2024 fi
2025
2026 printf " Can we call FLUSH intrinsic subroutine... "
2027 check_HAVE_FLUSH
2028 if test "x$HAVE_FLUSH" = xt ; then
2029 DEFINES="$DEFINES -DHAVE_FLUSH"
2030 echo "yes"
2031 else
2032 echo "no"
2033 fi
2034
2035 DEFINES="$DEFINES $IGNORE_TIME"
2036 if test "x$EMBED_SRC" = xt ; then
2037 build_embed_encode
2038 fi
2039 if test "x$EMBED_SRC" = xt ; then
2040 ENABLE="$ENABLE embed_files"
2041 # DEFINES="$DEFINES -DHAVE_EMBED_SRC"
2042 fi
2043
2044 printf "\n=== Setting defaults ===\n"
2045 printf " Adding MODS directories: "
2046 for d in $MODS ; do
2047 if test ! -d $d ; then
2048 echo
2049 echo "Error: MODS directory \"$d\" not found!"
2050 exit 1
2051 else
2052 printf "$d "
2053 SOURCEDIRS="$SOURCEDIRS $d"
2054 INCLUDEDIRS="$INCLUDEDIRS $d"
2055 fi
2056 done
2057 echo
2058
2059 #if test "x${PLATFORM}" = x ; then
2060 # PLATFORM=$p_PLATFORM
2061 #fi
2062
2063 if test "x${EXEDIR}" = x ; then
2064 tmp=`echo $PWD | sed -e 's/\// /g' | $AWK '{print $NR}'`
2065 if test "x$tmp" = "xbin" -a -d ../exe -a $ROOTDIR = .. ; then
2066 EXEDIR=../exe
2067 else
2068 EXEDIR=.
2069 fi
2070 fi
2071 if test ! -d ${EXEDIR} ; then
2072 echo "Error: the specified EXEDIR (\"$EXEDIR\") does not exist!"
2073 exit 1
2074 fi
2075
2076 if test "x${TOOLSDIR}" = x ; then
2077 TOOLSDIR="$ROOTDIR/tools"
2078 fi
2079 if test ! -d ${TOOLSDIR} ; then
2080 echo "Error: the specified TOOLSDIR (\"$TOOLSDIR\") does not exist!"
2081 exit 1
2082 fi
2083 if test "x$S64" = x ; then
2084 echo "3.0 _d 3" | ${TOOLSDIR}/set64bitConst.sh > /dev/null 2>&1
2085 RETVAL=$?
2086 if test "x${RETVAL}" = x0 ; then
2087 S64='$(TOOLSDIR)/set64bitConst.sh'
2088 else
2089 echo "3.0 _d 3" | ${TOOLSDIR}/set64bitConst.csh > /dev/null 2>&1
2090 RETVAL=$?
2091 if test "x${RETVAL}" = x0 ; then
2092 S64='$(TOOLSDIR)/set64bitConst.csh'
2093 else
2094 cat <<EOF
2095
2096 ERROR: neither of the two default scripts:
2097
2098 ${TOOLSDIR}/set64bitConst.sh
2099 ${TOOLSDIR}/set64bitConst.csh
2100
2101 are working so please check paths or specify (with \$S64) a
2102 working version of this script.
2103
2104 EOF
2105 exit 1
2106 fi
2107 fi
2108 fi
2109 THIS_SCRIPT=`echo ${0} | sed 's:'$TOOLSDIR':\$(TOOLSDIR):'`
2110
2111 EXECUTABLE=${EXECUTABLE:-mitgcmuv}
2112
2113 # Set Standard Code Directories:
2114 if test "x$STANDARDDIRS" = xUSE_THE_DEFAULT ; then
2115 STANDARDDIRS="eesupp model"
2116 fi
2117 # if model in Standard-Code-Dir, add eesupp (needed to compile model)
2118 echo " $STANDARDDIRS " | grep ' model ' > /dev/null 2>&1
2119 ckM=$?
2120 echo " $STANDARDDIRS " | grep ' eesupp ' > /dev/null 2>&1
2121 ckE=$?
2122 if test $ckM = 0 -a $ckE = 1 ; then
2123 STANDARDDIRS="$STANDARDDIRS eesupp"
2124 fi
2125
2126 # We have a special set of source files in eesupp/src which are
2127 # generated from some template source files. We'll make them first so
2128 # they appear as regular source code
2129 if test -r $ROOTDIR"/eesupp/src/Makefile" ; then
2130 echo " Making source files in eesupp from templates"
2131 ( cd $ROOTDIR"/eesupp/src/" && $MAKE clean_old && $MAKE \
2132 ) > make_eesupp.errors 2>&1
2133 RETVAL=$?
2134 if test "x${RETVAL}" = x0 ; then
2135 rm -f make_eesupp.errors
2136 else
2137 echo "Error: problem encountered while building source files in eesupp:"
2138 cat make_eesupp.errors 1>&2
2139 exit 1
2140 fi
2141 fi
2142
2143 #same for pkg/exch2 and pkg/regrid
2144 for pdir in exch2 regrid ; do
2145 if test -r $ROOTDIR"/pkg/${pdir}/Makefile" ; then
2146 echo " Making source files in pkg/${pdir} from templates"
2147 ( cd $ROOTDIR"/pkg/"${pdir} && $MAKE clean_old && $MAKE \
2148 ) > make_${pdir}.errors 2>&1
2149 RETVAL=$?
2150 if test "x${RETVAL}" = x0 ; then
2151 rm -f make_${pdir}.errors
2152 else
2153 echo "Error: problem encountered while building source files in pkg/${pdir}:"
2154 cat make_${pdir}.errors 1>&2
2155 exit 1
2156 fi
2157 fi
2158 done
2159
2160 printf "\n=== Determining package settings ===\n"
2161 if test "x${PKG_DEPEND}" = x ; then
2162 tmp=$ROOTDIR"/pkg/pkg_depend"
2163 if test -r $tmp ; then PKG_DEPEND=$tmp ; fi
2164 fi
2165 if test "x${PKG_DEPEND}" = x ; then
2166 echo "Warning: No package dependency information was specified."
2167 echo " Please check that ROOTDIR/pkg/pkg_depend exists."
2168 else
2169 if test ! -r ${PKG_DEPEND} ; then
2170 echo "Error: can't read package dependency info from PKG_DEPEND=\"$PKG_DEPEND\""
2171 exit 1
2172 fi
2173 echo " getting package dependency info from $PKG_DEPEND"
2174 # Strip the comments and then convert the dependency file into arrays: PNAME, DNAME
2175 get_pdepend_list $PKG_DEPEND
2176 fi
2177
2178 # A default package groups file "$ROOTDIR/pkg/pkg_groups" is provided
2179 # to define the "default_pkg_list" and package groups (for convenience, one
2180 # can specify a group of packages using names like "ocean" and "atmosphere").
2181 if test "x${PKG_GROUPS}" = x ; then
2182 tmp=$ROOTDIR"/pkg/pkg_groups"
2183 if test -r $tmp ; then PKG_GROUPS=$tmp ; fi
2184 fi
2185 if test "x${PKG_GROUPS}" = x ; then
2186 echo "Warning: No package groups information was specified."
2187 echo " Please check that ROOTDIR/pkg/pkg_groups exists."
2188 else
2189 if test ! -r ${PKG_GROUPS} ; then
2190 echo "Error: can't read package groups info from PKG_GROUPS=\"$PKG_GROUPS\""
2191 exit 1
2192 fi
2193 echo " getting package groups info from $PKG_GROUPS"
2194 fi
2195
2196 # Search for packages to compile.
2197 echo " checking list of packages to compile:"
2198 PKG_LIST=
2199 if test "x${PKG_LIST}" = x ; then
2200 for i in "." $MODS ; do
2201 if test -r $i"/packages.conf" ; then
2202 PKG_LIST=$i"/packages.conf"
2203 break
2204 fi
2205 done
2206 fi
2207 if test "x${PKG_LIST}" = x ; then
2208 pkg_list='default_pkg_list'
2209 if test "x${PKG_GROUPS}" = x ; then
2210 echo "Error: need package groups info to expand pkg_list=\"$pkg_list\""
2211 exit 1
2212 fi
2213 else
2214 if test ! -r $PKG_LIST ; then
2215 echo "Error: can't read package list from PKG_LIST=\"$PKG_LIST\""
2216 exit 1
2217 else
2218 echo " using PKG_LIST=\"$PKG_LIST\""
2219 # Strip the comments and add all the names
2220 pkg_list=`cat $PKG_LIST | sed -e 's/#.*$//g' | $AWK '(NF>0){print $0}'`
2221 RETVAL=$?
2222 if test "x${RETVAL}" != x0 ; then
2223 printf "Error: can't parse package list "
2224 echo "-- please check PKG_LIST=\"$PKG_LIST\""
2225 exit 1
2226 fi
2227 fi
2228 fi
2229 for i in $pkg_list ; do
2230 PACKAGES="$PACKAGES $i"
2231 done
2232 echo " before group expansion packages are:$PACKAGES"
2233 if test "x${PKG_GROUPS}" != x ; then
2234 RET=1
2235 while test $RET = 1 ; do expand_pkg_groups; RET=$?; done
2236 echo " after group expansion packages are: $PACKAGES"
2237 fi
2238
2239 echo " applying DISABLE settings"
2240 echo "" > ./.tmp_pack
2241 for i in $PACKAGES ; do
2242 echo $i >> ./.tmp_pack
2243 done
2244 for i in `grep "-" ./.tmp_pack` ; do
2245 j=`echo $i | sed 's/[-]//'`
2246 DISABLE="$DISABLE $j"
2247 done
2248 pack=
2249 for p in $PACKAGES ; do
2250 addit="t"
2251 for d in $DISABLE ; do
2252 if test "x$p" = "x$d" ; then
2253 addit="f"
2254 fi
2255 done
2256 if test "x$addit" = xt ; then
2257 pack="$pack $p"
2258 fi
2259 done
2260 PACKAGES="$pack"
2261 echo " applying ENABLE settings"
2262 echo "" > ./.tmp_pack
2263 PACKAGES="$PACKAGES $ENABLE"
2264 # Test if each explicitly referenced package exists
2265 for i in $PACKAGES ; do
2266 j=`echo $i | sed 's/[-+]//'`
2267 if test ! -d "$ROOTDIR/pkg/$j" ; then
2268 echo "Error: dir '$ROOTDIR/pkg/$i' missing for package '$i'"
2269 exit 1
2270 fi
2271 echo $i >> ./.tmp_pack
2272 done
2273 PACKAGES=
2274 for i in `grep -v "-" ./.tmp_pack | sort | uniq` ; do
2275 PACKAGES="$PACKAGES $i"
2276 done
2277 rm -f ./.tmp_pack
2278 echo " packages are: $PACKAGES"
2279
2280 # Check for package MNC: if NetCDF is available, then build the MNC
2281 # template files ; otherwise, delete mnc from the list of packages.
2282 echo " $PACKAGES " | grep ' mnc ' > /dev/null 2>&1
2283 mnc_in=$?
2284 if test "x$HAVE_NETCDF" != xt ; then
2285 if test "x$mnc_in" = x0 ; then
2286 cat <<EOF
2287 *********************************************************************
2288 WARNING: the "mnc" package was enabled but tests failed to compile
2289 NetCDF applications. Please check that:
2290
2291 1) NetCDF is correctly installed for this compiler and
2292 2) the LIBS variable (within the "optfile") specifies the correct
2293 NetCDF library to link against.
2294
2295 Due to this failure, the "mnc" package is now DISABLED.
2296 *********************************************************************
2297 EOF
2298 PACKAGES=`echo $PACKAGES | sed -e 's/mnc//g'`
2299 DISABLE="$DISABLE mnc"
2300 else
2301 # this prevent to add mnc (due to pdepend rules) if not available
2302 DISABLE="$DISABLE mnc"
2303 fi
2304 else
2305 # we have NetCDF, we try to build MNC template files
2306 ( cd $ROOTDIR"/pkg/mnc" && $MAKE testclean && $MAKE templates ) > make_mnc.errors 2>&1
2307 RETVAL=$?
2308 if test "x${RETVAL}" = x0 ; then
2309 rm -f make_mnc.errors
2310 else
2311 echo "Error: problem encountered while building source files in pkg/mnc:"
2312 cat make_mnc.errors 1>&2
2313 if test "x$mnc_in" = x0 ; then
2314 exit 1
2315 else
2316 DISABLE="$DISABLE mnc"
2317 fi
2318 fi
2319 fi
2320
2321 # Check for package PROFILES: if NetCDF is not available,
2322 # then delete profiles from the list of available packages.
2323 if test "x$HAVE_NETCDF" != xt ; then
2324 echo " $PACKAGES " | grep ' profiles ' > /dev/null 2>&1
2325 RETVAL=$?
2326 if test "x$RETVAL" = x0 ; then
2327 cat <<EOF
2328 *********************************************************************
2329 WARNING: the "profiles" package was enabled but tests failed to
2330 compile NetCDF applications. Please check that:
2331
2332 1) NetCDF is correctly installed for this compiler and
2333 2) the LIBS variable (within the "optfile") specifies the correct
2334 NetCDF library to link against.
2335
2336 Due to this failure, the "profiles" package is now DISABLED.
2337 *********************************************************************
2338 EOF
2339 PACKAGES=`echo $PACKAGES | sed -e 's/profiles//g'`
2340 DISABLE="$DISABLE profiles"
2341 else
2342 # this prevent to add profiles (due to pdepend rules) if not available
2343 DISABLE="$DISABLE profiles"
2344 fi
2345 fi
2346
2347 # Check for package RADTRANS: if LAPACK is not available,
2348 # then issue a warning that the direct radtrans solver is not available.
2349 if test "x$HAVE_LAPACK" != xt ; then
2350 echo " $PACKAGES " | grep ' radtrans ' > /dev/null 2>&1
2351 RETVAL=$?
2352 if test "x$RETVAL" = x0 ; then
2353 cat <<EOF
2354 *********************************************************************
2355 WARNING: the "radtrans" package was enabled but tests failed to
2356 compile LAPACK applications. This means that the direct radtrans
2357 solver is not available and compilation will fail if it is enabled.
2358 If you want to use the direct solver, please check that:
2359
2360 1) LAPACK is correctly installed for this compiler and
2361 2) the LIBS variable (within the "optfile") specifies the correct
2362 LAPACK library to link against.
2363 *********************************************************************
2364 EOF
2365 fi
2366 fi
2367
2368 if test "x${PKG_DEPEND}" != x ; then
2369 echo " applying package dependency rules"
2370 ck=
2371 while test "x$ck" != xtt ; do
2372 i=0
2373 # rtot=${#PNAME[@]}
2374 rtot=$nname
2375 while test $i -le $rtot ; do
2376
2377 # Is $pname in the current $PACKAGES list?
2378 # pname=${PNAME[$i]}
2379 tmp="pname=\"\$PNAME_$i\""
2380 eval $tmp
2381 pin="f"
2382 for p in $PACKAGES ; do
2383 if test "x$p" = "x$pname" ; then
2384 pin="t"
2385 fi
2386 done
2387 # or in the current $STANDARDDIRS list?
2388 for p in $STANDARDDIRS ; do
2389 if test "x$p" = "x$pname" ; then pin="t" ; fi
2390 done
2391
2392 # Is the DNAME entry a (+) or (-) rule ?
2393 tmp="dname=\"\$DNAME_$i\""
2394 eval $tmp
2395 plus="-"
2396 echo $dname | grep '^+' > /dev/null 2>&1
2397 RETVAL=$?
2398 if test "x$RETVAL" = x0 ; then
2399 plus="+"
2400 fi
2401
2402 # Is $dname in the current $PACKAGES list?
2403 dname=`echo $dname | sed -e 's/^[+-]//'`
2404 din="f"
2405 for p in $PACKAGES ; do
2406 if test "x$p" = "x$dname" ; then
2407 din="t"
2408 fi
2409 done
2410
2411 # Do we need to add $dname according to the dependency rules?
2412 if test "x$pin" = xt -a "x$plus" = "x+" -a "x$din" = xf ; then
2413 #echo " " $pname ": need to add :" $dname
2414 in_dis="f"
2415 for dis in $DISABLE ; do
2416 if test "x$dis" = "x$dname" ; then
2417 in_dis="t"
2418 fi
2419 done
2420 if test "x$in_dis" = xt ; then
2421 echo "Error: can't satisfy package dependencies:"
2422 echo " \"$dname\" is required by the dependency rules"
2423 echo " but is disallowed by the DISABLE settings"
2424 exit 1
2425 else
2426 PACKAGES="$PACKAGES $dname"
2427 ck=
2428 fi
2429 fi
2430
2431 # Do we need to get rid of $dname according to the dependency rules?
2432 if test "x$pin" = xt -a "x$plus" = "x-" -a "x$din" = xt; then
2433 echo "Error: can't satisfy package dependencies:"
2434 echo " \"$pname\" was requested but is disallowed by"
2435 echo " the dependency rules for \"$dname\""
2436 exit 1
2437 fi
2438 i=`echo "$i + 1" | bc -l`
2439 #i=$(( $i + 1 ))
2440 done
2441 ck=$ck"t"
2442 done
2443 echo " packages are: $PACKAGES"
2444 fi
2445 for i in $PACKAGES ; do
2446 adr="$ROOTDIR/pkg/$i"
2447 if test -d $adr ; then
2448 SOURCEDIRS="$SOURCEDIRS $adr"
2449 INCLUDEDIRS="$INCLUDEDIRS $adr"
2450 if test "x$i" = xautodiff ; then
2451 AUTODIFF_PKG_USED=t
2452 fi
2453 else
2454 echo "Error: the directory \"$adr\" for package $i doesn't exist"
2455 exit 1
2456 fi
2457 done
2458
2459 # Create a list of #define and #undef to enable/disable packages
2460 PACKAGES_DOT_H=PACKAGES_CONFIG.h
2461 # The following UGLY HACK sets multiple "#undef"s and it needs to go
2462 # away. On 2003-08-12, CNH, JMC, and EH3 agreed that the CPP_OPTIONS.h
2463 # file would eventually be split up so that all package-related #define
2464 # statements could be separated and handled only by genmake.
2465 names=`ls -1 "$ROOTDIR/pkg"`
2466 all_pack=
2467 DISABLED_PACKAGES=
2468 for n in $names ; do
2469 if test -d "$ROOTDIR/pkg/$n" -a "x$n" != xCVS ; then
2470 has_pack="f"
2471 for pack in $PACKAGES ; do
2472 if test "x$pack" = "x$n" ; then
2473 has_pack="t"
2474 break
2475 fi
2476 done
2477 if test "x$has_pack" = xf ; then
2478 undef=`echo "ALLOW_$n" | sed -e 'y/abcdefghijklmnopqrstuvwxyz/ABCDEFGHIJKLMNOPQRSTUVWXYZ/'`
2479 DISABLED_PACKAGES="$DISABLED_PACKAGES -U$undef"
2480 fi
2481 fi
2482 done
2483 ENABLED_PACKAGES=
2484 for i in $PACKAGES ; do
2485 def=`echo "ALLOW_$i" | sed -e 'y/abcdefghijklmnopqrstuvwxyz/ABCDEFGHIJKLMNOPQRSTUVWXYZ/'`
2486 ENABLED_PACKAGES="$ENABLED_PACKAGES -D$def"
2487 #eh3 DEFINES="$DEFINES -D$def"
2488
2489 #EH3 WARNING : This is an UGLY HACK that needs to be removed!!!
2490 case $i in
2491 aim_v23)
2492 ENABLED_PACKAGES="$ENABLED_PACKAGES -DALLOW_AIM"
2493 echo "Warning: ALLOW_AIM is set to enable aim_v23."
2494 ;;
2495 esac
2496 #EH3 WARNING : This is an UGLY HACK that needs to be removed!!!
2497
2498 done
2499
2500 echo " Adding STANDARDDIRS='$STANDARDDIRS'"
2501 BUILDDIR=${BUILDDIR:-.}
2502 if test "x$STANDARDDIRS" != x ; then
2503 for d in $STANDARDDIRS ; do
2504 adr="$ROOTDIR/$d/src"
2505 if test ! -d $adr ; then
2506 echo "Error: directory $adr not found -- please check that ROOTDIR=\"$ROOTDIR\""
2507 echo " is correct and that you correctly specified the STANDARDDIRS option"
2508 exit 1
2509 else
2510 SOURCEDIRS="$SOURCEDIRS $adr"
2511 fi
2512 adr="$ROOTDIR/$d/inc"
2513 if test ! -d $adr ; then
2514 echo "Error: directory $adr not found -- please check that ROOTDIR=\"$ROOTDIR\""
2515 echo " is correct and that you correctly specified the STANDARDDIRS option"
2516 exit 1
2517 else
2518 INCLUDEDIRS="$INCLUDEDIRS $adr"
2519 fi
2520 done
2521 fi
2522
2523 echo " Searching for *OPTIONS.h files in order to warn about the presence"
2524 echo " of \"#define \"-type statements that are no longer allowed:"
2525 CPP_OPTIONS=
2526 CPP_EEOPTIONS=
2527 spaths=". $INCLUDEDIRS"
2528 names=`ls -1 "$ROOTDIR/pkg"`
2529 for i in $spaths ; do
2530 try="$i/CPP_OPTIONS.h"
2531 if test -f $try -a -r $try -a "x$CPP_OPTIONS" = x ; then
2532 echo " found CPP_OPTIONS=\"$try\""
2533 CPP_OPTIONS="$try"
2534 # New safety test: make sure packages are not mentioned in CPP_OPTIONS.h
2535 for n in $names ; do
2536 test_for_package_in_cpp_options $CPP_OPTIONS $n
2537 done
2538 fi
2539 try="$i/CPP_EEOPTIONS.h"
2540 if test -f $try -a -r $try -a "x$CPP_EEOPTIONS" = x ; then
2541 echo " found CPP_EEOPTIONS=\"$try\""
2542 # New safety test: make sure MPI is not determined by CPP_EEOPTIONS.h
2543 #**** not yet enabled ****
2544 # test_for_mpi_in_cpp_eeoptions $try
2545 #**** not yet enabled ****
2546 CPP_EEOPTIONS="$try"
2547 fi
2548 done
2549 if test "x$CPP_OPTIONS" = x ; then
2550 echo "Error: can't find \"CPP_OPTIONS.h\" in the path list: $spaths"
2551 exit 1
2552 fi
2553
2554 # Here, we build the list of files to be "run through" the adjoint
2555 # compiler.
2556 if test -f ./adSrcFiles.tmp ; then
2557 rm -f ./adSrcFiles.tmp
2558 fi
2559 echo " Creating the list of files for the adjoint compiler."
2560 touch adSrcFiles.tmp
2561 for i in $SOURCEDIRS ; do
2562 list_files=`( cd $i && ls -1 *.list 2>/dev/null )`
2563 for j in $list_files ; do
2564 cat $i/$j >> adSrcFiles.tmp
2565 done
2566 done
2567 if test ! "x"$FS = "x.f" ; then
2568 cat adSrcFiles.tmp | sed -e "s/\.f/.$FS/g" > adSrcFiles.tmp_f
2569 mv -f adSrcFiles.tmp_f adSrcFiles.tmp
2570 fi
2571
2572 echo
2573 echo "=== Creating the Makefile ==="
2574 echo " setting INCLUDES"
2575 for i in $INCLUDEDIRS ; do
2576 if test ! -d $i ; then
2577 echo "Warning: can't find INCLUDEDIRS=\"$i\""
2578 fi
2579 done
2580
2581 #if test ! "x$DIVA" = x -a ! "x$MPI" = x ; then
2582 if test ! "x$MPI" = x ; then
2583 if test ! "x$MPIINCLUDEDIR" = x ; then
2584 # Do a local copy of MPI headers files (in local dir ./mpi_headers/) after
2585 # checking for additional included headers (in case of chain of included
2586 # header); also set LOCAL_MPI_HEADERS (if not already set)
2587 mpi_headers_do_local_copy
2588 fi
2589 fi
2590
2591 echo " Determining the list of source and include files"
2592 rm -rf .links.tmp
2593 mkdir .links.tmp
2594 touch .links.tmp/foo
2595 if test ! -r ".links.tmp/foo" ; then
2596 echo
2597 echo "ERROR : something is wrong with your directory permissions or"
2598 echo " your user file-creation mask (\"umask\") since creating a"
2599 echo " sub-dir, touch-ing a file within it, and then reading it is"
2600 echo " not working. Please try setting your umask to something"
2601 echo " sane such as:"
2602 echo
2603 echo " umask 0002"
2604 echo
2605 echo " and please verify that you have the proper permissions for"
2606 echo " creating sub-directories and then reading files created"
2607 echo " within them."
2608 echo
2609 exit 1
2610 fi
2611 rm -f .links.tmp/foo
2612
2613 if test "x$OPENAD" != x ; then
2614 OAD_DONT_COMPILE="/dev/null"
2615 OAD_DONT_TRANSFORM="/dev/null"
2616 OAD_KEEP_ORIGINAL="/dev/null"
2617 OAD_CB2M_FILES="/dev/null"
2618 OADTOOLS="$TOOLSDIR/OAD_support"
2619 echo " looking for dontCompile file: "
2620 for i in "." $MODS ; do
2621 if test -r $i"/dontCompile" ; then
2622 OAD_DONT_COMPILE=$i"/dontCompile"
2623 echo " found $OAD_DONT_COMPILE"
2624 break
2625 fi
2626 done
2627 echo " looking for dontTransform file: "
2628 for i in "." $MODS ; do
2629 if test -r $i"/dontTransform" ; then
2630 OAD_DONT_TRANSFORM=$i"/dontTransform"
2631 echo " found $OAD_DONT_TRANSFORM"
2632 break
2633 fi
2634 done
2635 echo " looking for keepOriginal file: "
2636 for i in "." $MODS ; do
2637 if test -r $i"/keepOriginal" ; then
2638 OAD_KEEP_ORIGINAL=$i"/keepOriginal"
2639 echo " found $OAD_KEEP_ORIGINAL"
2640 break
2641 fi
2642 done
2643 echo " looking for cb2mFiles: "
2644 for i in "." $MODS ; do
2645 if test -r $i"/cb2mFiles" ; then
2646 OAD_CB2M_FILES=$i"/cb2mFiles"
2647 echo " found $OAD_CB2M_FILES"
2648 break
2649 fi
2650 done
2651 echo " OpenAD exceptions: "
2652 fi
2653
2654 echo "# This section creates symbolic links" > srclinks.tmp
2655 echo "" >> srclinks.tmp
2656 printf 'F77_SRC_FILES = ' > F77srclist.tmp
2657 printf 'NON_AD_F77_SRC_FILES = ' > nonADF77srclist.tmp
2658 printf 'C_SRC_FILES = ' > csrclist.tmp
2659 printf 'F90_SRC_FILES = ' > F90srclist.tmp
2660 printf 'H_SRC_FILES = ' > hsrclist.tmp
2661 printf 'AD_FLOW_FILES = ' > ad_flow_files.tmp
2662 alldirs="$SOURCEDIRS $INCLUDEDIRS ."
2663 for d in $alldirs ; do
2664 deplist=
2665 sfiles=`( cd $d; echo *.[h,c,F] *.flow )`
2666 sfiles=`( echo $sfiles; cd $d; echo *.F90 )`
2667 if test "x$OPENAD" != x ; then
2668 sfiles=`( echo $sfiles | grep -v _cb2m\. )`
2669 fi
2670 for sf in $sfiles ; do
2671 if test ! -r ".links.tmp/$sf" ; then
2672 if test -f "$d/$sf" ; then
2673 ignore_f=f
2674 case $d/$sf in
2675 ./$PACKAGES_DOT_H)
2676 ignore_f=t
2677 ;;
2678 ./AD_CONFIG.h)
2679 ignore_f=t
2680 ;;
2681 ./FC_NAMEMANGLE.h)
2682 ignore_f=t
2683 ;;
2684 ./BUILD_INFO.h)
2685 ignore_f=t
2686 ;;
2687 ./EMBEDDED_FILES.h)
2688 ignore_f=t
2689 ;;
2690 *)
2691 # For the local directory *ONLY*,
2692 # ignore all soft-links
2693 if test "x$HAVE_TEST_L" = xt -a "x$d" = x. -a -L $sf ; then
2694 ignore_f=t
2695 else
2696 touch .links.tmp/$sf
2697 deplist="$deplist $sf"
2698 fi
2699 ;;
2700 esac
2701 if test "x$ignore_f" = xf ; then
2702 extn=`echo $sf | $AWK -F. '{print $NF}'`
2703 case $extn in
2704 F)
2705 echo " \\" >> F77srclist.tmp
2706 printf " $sf" >> F77srclist.tmp
2707 if test "x$OPENAD" != x ; then
2708 basename=${sf%%.F}
2709 isAD=`egrep ^$basename.f'[ ]*' adSrcFiles.tmp`
2710 if test -z "$isAD" ; then
2711 toBeIgnored=`egrep ^$basename'[ ]*' ${OAD_DONT_COMPILE}`
2712 if test -z "$toBeIgnored" ; then
2713 echo " \\" >> nonADF77srclist.tmp
2714 printf " $sf" >> nonADF77srclist.tmp
2715 else
2716 echo " not to be compiled : $sf"
2717 fi
2718 else # file is initially listed as an AD file we want to exclude it
2719 # or we want to retain the untransformed version
2720 notToBeTransformed=`egrep ^$basename'[ ]*' ${OAD_DONT_TRANSFORM}`
2721 untransformedVersionToBeKept=`egrep ^$basename'[ ]*' ${OAD_KEEP_ORIGINAL}`
2722 if test -n "$notToBeTransformed"; then
2723 echo " not to be transformed: $sf"
2724 fi
2725 if test -n "$untransformedVersionToBeKept" ; then
2726 echo " original to be kept : $sf"
2727 fi
2728 if test -n "$notToBeTransformed" -o -n "$untransformedVersionToBeKept" ; then
2729 echo " \\" >> nonADF77srclist.tmp
2730 printf " $sf" >> nonADF77srclist.tmp
2731 fi
2732 fi
2733 fi
2734 ;;
2735 F90)
2736 echo " \\" >> F90srclist.tmp
2737 printf " $sf" >> F90srclist.tmp
2738 ;;
2739 c)
2740 echo " \\" >> csrclist.tmp
2741 printf " $sf" >> csrclist.tmp
2742 ;;
2743 h)
2744 echo " \\" >> hsrclist.tmp
2745 printf " $sf" >> hsrclist.tmp
2746 ;;
2747 flow)
2748 echo " \\" >> ad_flow_files.tmp
2749 printf " $sf" >> ad_flow_files.tmp
2750 ;;
2751 esac
2752 fi
2753 fi
2754 fi
2755 done
2756 if test "x$deplist" != x ; then
2757 if test "$d" != "." ; then
2758 echo "" >> srclinks.tmp
2759 echo "# These files are linked from $d" >> srclinks.tmp
2760 echo "$deplist :" >> srclinks.tmp
2761 # We need to make sure that the link isn't already there.
2762 # This may happen when make thinks that a header file has to be "remade"
2763 # because a module it depends on has changed. In this case we do nothing.
2764 printf "\tif [ ! -L \$@ ]; then \$(LN) %s/\$@ \$@; fi\n" $d >> srclinks.tmp
2765 fi
2766 fi
2767 done
2768 rm -rf .links.tmp
2769 echo "" >> F77srclist.tmp
2770 echo "" >> nonADF77srclist.tmp
2771 echo "" >> csrclist.tmp
2772 echo "" >> F90srclist.tmp
2773 echo "" >> hsrclist.tmp
2774 echo "" >> ad_flow_files.tmp
2775
2776 CMDLINE=$0
2777 for xx in "$@" ; do nw=`echo $xx | wc -w`
2778 if test $nw = '1' ; then CMDLINE="$CMDLINE $xx"
2779 else CMDLINE="$CMDLINE '$xx'" ; fi
2780 done
2781
2782 if test -f $MAKEFILE ; then
2783 mv -f $MAKEFILE "$MAKEFILE.old"
2784 fi
2785 echo " Writing makefile: $MAKEFILE"
2786 echo "# Multithreaded + multi-processing makefile for:" > $MAKEFILE
2787 echo "# $MACHINE" >> $MAKEFILE
2788 echo "# This makefile was generated automatically on" >> $MAKEFILE
2789 echo "# $THISDATE" >> $MAKEFILE
2790 echo "# by the command:" >> $MAKEFILE
2791 echo "# $CMDLINE" >> $MAKEFILE
2792 echo "# executed by:" >> $MAKEFILE
2793 echo "# ${THISUSER}@${THISHOST}:${THISCWD}" >> $MAKEFILE
2794
2795 EXE_AD=$EXECUTABLE"_ad"
2796 EXE_FTL=$EXECUTABLE"_ftl"
2797 EXE_SVD=$EXECUTABLE"_svd"
2798
2799 cat >>$MAKEFILE <<EOF
2800 #
2801 # OPTFILE="$OPTFILE"
2802 #
2803 # BUILDDIR : Directory where object files are written
2804 # SOURCEDIRS : Directories containing the source (.F) files
2805 # INCLUDEDIRS : Directories containing the header-source (.h) files
2806 # EXEDIR : Directory where executable that is generated is written
2807 # EXECUTABLE : Full path of executable binary
2808 #
2809 # CPP : C-preprocessor command
2810 # INCLUDES : Directories searched for header files
2811 # DEFINES : Macro definitions for CPP
2812 # MAKEDEPEND : Dependency generator
2813 # FC : Fortran compiler command
2814 # FFLAGS : Configuration/debugging options for FC
2815 # FOPTIM : Optimization options for FC
2816 # LINK : Command for link editor program
2817 # LIBS : Library flags /or/ additional optimization/debugging flags
2818
2819 ROOTDIR = ${ROOTDIR}
2820 BUILDDIR = ${BUILDDIR}
2821 SOURCEDIRS = ${SOURCEDIRS}
2822 INCLUDEDIRS = ${INCLUDEDIRS}
2823 EXEDIR = ${EXEDIR}
2824 EXECUTABLE = \$(EXEDIR)/${EXECUTABLE}
2825 TOOLSDIR = ${TOOLSDIR}
2826 OADTOOLS = ${OADTOOLS}
2827
2828 #eh3 new defines for the adjoint work
2829 AUTODIFF = ${ROOTDIR}/pkg/autodiff
2830 EXE_AD = ${EXE_AD}
2831 EXE_FTL = ${EXE_FTL}
2832 EXE_SVD = ${EXE_SVD}
2833
2834 ENABLED_PACKAGES = ${ENABLED_PACKAGES}
2835 DISABLED_PACKAGES = ${DISABLED_PACKAGES}
2836
2837 # These files are created by Makefile
2838 SPECIAL_FILES = ${PACKAGES_DOT_H} AD_CONFIG.h FC_NAMEMANGLE.h BUILD_INFO.h
2839 EOF
2840
2841 if test "x$EMBED_SRC" = xt ; then
2842 echo "EMBEDDED_FILES = EMBEDDED_FILES.h" >>$MAKEFILE
2843 else
2844 echo "EMBEDDED_FILES = " >>$MAKEFILE
2845 fi
2846
2847 # extract default cpp search path so we can pass it to makedepend
2848 CPPINCLUDES=`cat /dev/null | $CPP -v 2>&1 | awk '/^End of search/{f=0}!/^\#/{if(f){printf " -I%s", $1;}}/^\#include "..." search start/{f=1}'`
2849
2850 cat >>$MAKEFILE <<EOF
2851 # Unix ln (link)
2852 LN = ${LN}
2853 # Dependency generator
2854 MAKEDEPEND = ${MAKEDEPEND}
2855 # Special preprocessor (KAP on DECs, FPP on Crays)
2856 KPP = ${KPP}
2857 # Fortran compiler
2858 FC = ${FC}
2859 # Fortran compiler
2860 F90C = ${F90C}
2861 # C compiler
2862 CC = ${CC}
2863 # Link editor
2864 LINK = ${LINK} ${LDADD}
2865
2866 # Defines for CPP
2867 DEFINES = ${DEFINES}
2868 # Includes for CPP
2869 INCLUDES = ${INCLUDES}
2870 # default CPP includes for makedepend
2871 CPPINCLUDES = ${CPPINCLUDES}
2872 # Flags for KPP
2873 KFLAGS1 = ${KFLAGS1}
2874 KFLAGS2 = ${KFLAGS2}
2875 # Optim./debug for FC
2876 FFLAGS = ${FFLAGS} ${FEXTRAFLAGS}
2877 FOPTIM = ${FOPTIM}
2878 # Optim./debug for FC
2879 F90FLAGS = ${F90FLAGS}
2880 F90OPTIM = ${F90OPTIM}
2881 F90FIXEDFORMAT = ${F90FIXEDFORMAT}
2882 # Flags for CC
2883 CFLAGS = ${CFLAGS}
2884 # Files that should not be optimized
2885 NOOPTFILES = ${NOOPTFILES}
2886 NOOPTFLAGS = ${NOOPTFLAGS}
2887 # Flags and libraries needed for linking
2888 LIBS = ${LIBS}
2889 # Name of the makefile
2890 MAKEFILE = ${MAKEFILE}
2891 # Name of the make program
2892 MAKE = ${MAKE}
2893
2894 EOF
2895
2896 cat F77srclist.tmp >> $MAKEFILE
2897 cat nonADF77srclist.tmp >> $MAKEFILE
2898 cat csrclist.tmp >> $MAKEFILE
2899 cat F90srclist.tmp >> $MAKEFILE
2900 cat hsrclist.tmp >> $MAKEFILE
2901 cat ad_flow_files.tmp >> $MAKEFILE
2902
2903 rm -f F77srclist.tmp nonADF77srclist.tmp csrclist.tmp F90srclist.tmp hsrclist.tmp ad_flow_files.tmp
2904
2905 echo >> $MAKEFILE
2906
2907 # add definitions for preprocessed sources
2908 # and note that not all systems allow case sensitive extensions
2909 # hence the $FS and $FS90 here.
2910 # for fixed format f90 files we use ff90 or FF90 resp
2911 # but these are not expected to be the original source files
2912
2913 echo 'F77_PP_SRC_FILES = $(F77_SRC_FILES:.F=.'$FS')' >> $MAKEFILE
2914 echo 'F90_PP_SRC_FILES = $(F90_SRC_FILES:.F90=.'$FS90')' >> $MAKEFILE
2915 echo 'OBJFILES= $(F77_SRC_FILES:.F=.o) $(C_SRC_FILES:.c=.o) $(F90_SRC_FILES:.F90=.o)' >> $MAKEFILE
2916 echo 'FLOWFILES = $(AD_FLOW_FILES:.flow=.flowdir)' >> $MAKEFILE
2917 echo >> $MAKEFILE
2918 echo '.SUFFIXES:' >> $MAKEFILE
2919 echo '.SUFFIXES: .o .'$FS' .p .F .c .f'$FS90' .'$FS90' .FF90 .F90 .flowdir .flow' >> $MAKEFILE
2920
2921 cat >>$MAKEFILE <<EOF
2922
2923 all: fwd_exe_target
2924 fwd_exe_target:
2925 @echo Update AD_CONFIG.h and make \$(EXECUTABLE)
2926 @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Forward version" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN > ad_config.template
2927 @cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
2928 @-rm -f ad_config.template
2929 \$(MAKE) -f \$(MAKEFILE) \$(EXECUTABLE)
2930
2931 \$(EXECUTABLE): \$(SPECIAL_FILES) \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) \$(OBJFILES) \$(EMBEDDED_FILES)
2932 @echo Creating \$@ ...
2933 \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) \$(LIBS)
2934
2935 depend:
2936 @\$(MAKE) -f \$(MAKEFILE) links
2937 \$(MAKEDEPEND) -f \$(MAKEFILE) -o .$FS \$(DEFINES) \$(INCLUDES) \$(CPPINCLUDES) \$(F77_SRC_FILES)
2938 \$(TOOLSDIR)/f90mkdepend >> \$(MAKEFILE)
2939 -rm -f makedepend.out
2940
2941 lib: libmitgcmuv.a
2942
2943 libmitgcmuv.a: \$(OBJFILES)
2944 ar rcv libmitgcmuv.a \$(OBJFILES)
2945 ar d libmitgcmuv.a main.o
2946
2947 obj: \$(OBJFILES)
2948
2949 links: \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) \$(SPECIAL_FILES)
2950
2951 small_f: \$(F77_PP_SRC_FILES) \$(F90_PP_SRC_FILES)
2952
2953 output.txt: \$(EXECUTABLE)
2954 @printf 'running ... '
2955 @\$(EXECUTABLE) > \$@
2956
2957 # remove most of the files that "make" generates
2958 clean:
2959 -rm -rf *.p *.$FS90 *.mod ${RMFILES} work.{pc,pcl} *.template
2960 -rm -rf *.o
2961 -rm -rf *.$FS *.flowdir
2962 -rm -rf *.f$FS90 \$(AD_CLEAN) ad_input*
2963
2964 # remove most of the files that "make" and "make depend" generate
2965 Clean:
2966 @\$(MAKE) -f \$(MAKEFILE) clean
2967 @\$(MAKE) -f \$(MAKEFILE) cleanlinks
2968 -rm -f \$(SPECIAL_FILES) f90mkdepend.log $MAKEFILE.old
2969 -rm -f taf_command taf_output taf_ad.log taf_ad_flow.log taf_ftl.log
2970
2971 # remove also the executable, files that "genmake2" generates (except Makefile)
2972 # and output from a run (plus log files from testreport)
2973 CLEAN:
2974 @\$(MAKE) -f \$(MAKEFILE) Clean
2975 -rm -f \$(EXECUTABLE) \$(EXE_AD) \$(EXE_FTL) *.bak
2976 -rm -f $LOGFILE genmake_state genmake_*optfile
2977 -rm -f SIZE.h.mpi genmake.tr_log make.tr_log
2978 -rm -rf mpi_headers mnc_test_*
2979 -find \$(EXEDIR) -name "*.meta" -exec rm {} \;
2980 -find \$(EXEDIR) -name "*.data" -exec rm {} \;
2981 -find \$(EXEDIR) -name "fort.*" -exec rm {} \;
2982 -rm -f *.txt STDOUT.* STDERR.* *diagnostics.log *.[0-9][0-9][0-9][0-9].log
2983 -rm -f datetime costfinal divided.ctrl snapshot* output_adm.txt.diva_*
2984 -rm -f *_MIT_CE_000.opt0000 costfunction*0000
2985 -rm -f oad_cp.[0-9][0-9][0-9].?????
2986
2987 makefile:
2988 $THIS_SCRIPT $G2ARGS
2989 cleanlinks:
2990 -find . -type l -exec rm {} \;
2991
2992 # Special targets (SPECIAL_FILES) which are created by make
2993 ${PACKAGES_DOT_H}:
2994 @echo Creating \$@ ...
2995 @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines -bPACKAGES_CONFIG_H "Disabled packages:" \$(DISABLED_PACKAGES) " " "Enabled packages:" \$(ENABLED_PACKAGES) > \$@
2996 AD_CONFIG.h:
2997 @echo Creating \$@ ...
2998 @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Default version" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN > \$@
2999 FC_NAMEMANGLE.h:
3000 @echo Creating \$@ ...
3001 echo "$FC_NAMEMANGLE" > \$@
3002
3003 BUILD_INFO.h:
3004 @echo Creating \$@ ...
3005 EOF
3006
3007 test ! "x$THISVER" = x && echo " -echo \"#define THISVER '$THISVER'\" > \$@" >> $MAKEFILE
3008 test ! "x$THISUSER" = x && echo " -echo \"#define THISUSER '$THISUSER'\" >> \$@" >> $MAKEFILE
3009 test ! "x$THISDATE" = x && echo " -echo \"#define THISDATE '$THISDATE'\" >> \$@" >> $MAKEFILE
3010 test ! "x$THISHOST" = x && echo " -echo \"#define THISHOST '$THISHOST'\" >> \$@" >> $MAKEFILE
3011
3012 if test "x$EMBED_SRC" = xt ; then
3013 cat >>$MAKEFILE <<EOF
3014
3015 decode_files.o : EMBEDDED_FILES.h
3016
3017 ## \$(F77_PP_SRC_FILES)
3018 all_fF.tar.gz : \$(SPECIAL_FILES) \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) \$(F77_PP_SRC_FILES) Makefile
3019 @echo Creating \$@ ...
3020 -tar -hcf all_fF.tar \$(SPECIAL_FILES) \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) \$(F77_PP_SRC_FILES) Makefile
3021 -rm -f all_fF.tar.gz
3022 -gzip all_fF.tar
3023
3024 EMBEDDED_FILES.h : all_fF.tar.gz
3025 @echo Creating \$@ ...
3026 -\${ROOTDIR}/tools/embed_encode/encode_files EMBEDDED_FILES.h all_fF.tar.gz
3027
3028 EOF
3029 fi
3030
3031 cat >>$MAKEFILE <<EOF
3032
3033 # The normal chain of rules is ( .F - .$FS - .o )
3034
3035 ## This nullifies any default implicit rules concerning these two file types:
3036 ## %.o : %.F
3037
3038 # C preprocessing and replacing the _d in constants:
3039 CPPCMD = cat \$< | ${CPP} \$(DEFINES) \$(INCLUDES) | ${S64}
3040
3041 .F.$FS:
3042 \$(CPPCMD) > \$@
3043 .$FS.o:
3044 \$(FC) \$(FFLAGS) \$(FOPTIM) -c \$<
3045 .F.o:
3046 \$(FC) \$(FFLAGS) \$(FOPTIM) -c \$<
3047 .F90.$FS90:
3048 \$(CPPCMD) > \$@
3049 .FF90.f$FS90:
3050 \$(CPPCMD) > \$@
3051 .$FS90.o:
3052 \$(F90C) \$(F90FLAGS) \$(F90OPTIM) -c \$<
3053 .f$FS90.o:
3054 cp \$< \$(basename \$<).f90
3055 \$(F90C) \$(F90FLAGS) \$(F90OPTIM) -c \$(F90FIXEDFORMAT) \$(basename \$<).f90
3056 .c.o:
3057 \$(CC) \$(CFLAGS) \$(DEFINES) \$(INCLUDES) -c \$<
3058 .flow.flowdir:
3059 \$(CPPCMD) > \$@
3060
3061 # Special exceptions that use the ( .F - .p - .$FS - .o ) rule-chain
3062 .F.p:
3063 \$(CPPCMD) > \$@
3064 .p.$FS:
3065 \$(KPP) \$(KFLAGS1)\$@ \$(KFLAGS2) \$<
3066
3067 EOF
3068
3069 #=========================================
3070 #=== Automatic Differentiation Rules ===
3071 #=== for TAMC/TAF ======================
3072
3073 if test "x$OPENAD" = x ; then
3074
3075 cat >>$MAKEFILE <<EOF
3076
3077 TAMC = ${TAMC}
3078 TAF = ${TAF}
3079
3080 TAF_EXTRA = ${TAF_EXTRA}
3081 TAMC_EXTRA = ${TAMC_EXTRA}
3082 LOCAL_MPI_HEADERS = ${LOCAL_MPI_HEADERS}
3083
3084 EOF
3085
3086 ad_vars="AD_TAMC_FLAGS AD_TAF_FLAGS"
3087 ad_vars="$ad_vars FTL_TAMC_FLAGS FTL_TAF_FLAGS"
3088 ad_vars="$ad_vars SVD_TAMC_FLAGS SVD_TAF_FLAGS"
3089 for i in $ad_vars ; do
3090 name=$i
3091 t1="t2=\$"`echo "$i"`
3092 eval $t1
3093 printf "%-20s = " $name >> $MAKEFILE
3094 echo "$t2" | sed -e 's| \+| |g' >> $MAKEFILE
3095 done
3096
3097 echo " Add the source list for AD code generation"
3098 echo >> $MAKEFILE
3099 printf "AD_FILES = " >> $MAKEFILE
3100 AD_FILES=`cat adSrcFiles.tmp`
3101 for i in $AD_FILES ; do
3102 echo " \\" >> $MAKEFILE
3103 printf " $i" >> $MAKEFILE
3104 done
3105 echo >> $MAKEFILE
3106 rm -f adSrcFiles.tmp
3107
3108 cat >>$MAKEFILE <<EOF
3109
3110 # ... AD ...
3111 adall: ad_exe_target
3112 adtaf: ad_taf_output.$FS
3113 adtamc: ad_tamc_output.$FS
3114
3115 ad_exe_target:
3116 @echo Update AD_CONFIG.h and make \$(EXE_AD)
3117 @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Adjoint version" -bAD_CONFIG_H -DALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN > ad_config.template
3118 @cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
3119 @-rm -f ad_config.template
3120 \$(MAKE) -f \$(MAKEFILE) \$(EXE_AD)
3121
3122 ad_input_code.$FS: \$(F77_SRC_FILES) \$(AD_FLOW_FILES)
3123 @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Adjoint version" -bAD_CONFIG_H -DALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN > ad_config.template
3124 cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
3125 @-rm -f ad_config.template
3126 @\$(MAKE) -f \$(MAKEFILE) \$(F77_PP_SRC_FILES)
3127 @\$(MAKE) -f \$(MAKEFILE) \$(FLOWFILES)
3128 cat \$(FLOWFILES) \$(F77_PP_SRC_FILES) | sed -f \$(TOOLSDIR)/remove_comments_sed > ad_input_code.$FS
3129
3130 ad_taf_output.$FS: ad_input_code.$FS
3131 \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.$FS
3132 ls -l ad_input_code_ad.$FS
3133 cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.$FS
3134
3135 adtafonly:
3136 \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.$FS
3137 ls -l ad_input_code_ad.$FS
3138 cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.$FS
3139
3140 \$(EXE_AD): \$(SPECIAL_FILES) \$(F77_SRC_FILES) \$(C_SRC_FILES:.c=.o) \$(H_SRC_FILES) \$(F90_SRC_FILES) ad_taf_output.o \$(EMBEDDED_FILES)
3141 \$(LINK) -o \${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(C_SRC_FILES:.c=.o) ad_taf_output.o \$(LIBS)
3142
3143 ad_tamc_output.$FS: ad_input_code.$FS
3144 \$(TAMC) \$(AD_TAMC_FLAGS) \$(TAMC_EXTRA) ad_input_code.$FS
3145 cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_tamc_output.$FS
3146
3147 ad_tamc: ad_tamc_output.o \$(OBJFILES)
3148 \$(LINK) -o ${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_tamc_output.o \$(LIBS)
3149
3150 adonlyfwd:
3151 patch < \$(TOOLSDIR)/ad_taf_output.f.onlyfwd.diff
3152
3153 adtrick:
3154 patch < \$(TOOLSDIR)/ad_taf_output.f.adtrick.diff
3155
3156 adobj: ad_taf_output.o \$(OBJFILES)
3157
3158 # ... FTL ...
3159 ftlall: ftl_exe_target
3160 ftltaf: ftl_taf_output.$FS
3161 ftltamc: ftl_tamc_output.$FS
3162
3163 ftl_exe_target:
3164 @echo Update AD_CONFIG.h and make \$(EXE_FTL)
3165 @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "TangLin version" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN > ad_config.template
3166 @cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
3167 @-rm -f ad_config.template
3168 \$(MAKE) -f \$(MAKEFILE) \$(EXE_FTL)
3169
3170 ftl_input_code.$FS: \$(F77_SRC_FILES)
3171 @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "TangLin version" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN > ad_config.template
3172 cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
3173 @-rm -f ad_config.template
3174 @\$(MAKE) -f \$(MAKEFILE) \$(F77_PP_SRC_FILES)
3175 @\$(MAKE) -f \$(MAKEFILE) \$(AD_FLOW_FILES)
3176 cat \$(AD_FLOW_FILES) \$(F77_PP_SRC_FILES) | sed -f \$(TOOLSDIR)/remove_comments_sed > ftl_input_code.$FS
3177
3178 ftl_taf_output.$FS: ftl_input_code.$FS
3179 \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.$FS
3180 ls -l ftl_input_code_tl.$FS
3181 cat ftl_input_code_tl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.$FS
3182
3183 ftltafonly:
3184 \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.$FS
3185 ls -l ftl_input_code_tl.$FS
3186 cat ftl_input_code_tl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.$FS
3187
3188 \$(EXE_FTL): ftl_taf_output.o \$(C_SRC_FILES:.c=.o)
3189 \$(LINK) -o \${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(C_SRC_FILES:.c=.o) ftl_taf_output.o \$(LIBS)
3190
3191 ftl_tamc_output.$FS: ftl_input_code.$FS
3192 \$(TAMC) \$(FTL_TAMC_FLAGS) \$(TAMC_EXTRA) ftl_input_code.$FS
3193 cat ftl_input_code_ftl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_tamc_output.$FS
3194
3195 ftl_tamc: ftl_tamc_output.o \$(OBJFILES)
3196 \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_tamc_output.o \$(LIBS)
3197
3198 # ... SVD ...
3199 svdtaf: ad_taf_output.$FS ftl_taf_output.$FS
3200 @echo "--->>> Only ran TAF to generate SVD code! <<<---"
3201 @echo "--->>> Do make svdall afterwards to compile. <<<---"
3202 svdall: svd_touch svd_taf
3203
3204 svd_taf: \$(OBJFILES)
3205 \$(LINK) -o mitgcmuv_svd \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_taf_output.o ftl_taf_output.o \$(LIBS)
3206
3207 @echo "--->>> Only COMPILE svd code! <<<---"
3208 @echo "--->>> Assumes you previously <<<---"
3209 @echo "--->>> did make svdtaf <<<---"
3210
3211 svd_touch:
3212 @echo "--->>> Only COMPILE svd code! <<<---"
3213 @echo "--->>> Assumes you previously <<<---"
3214 @echo "--->>> did make svdtaf <<<---"
3215 touch ad_taf_output.$FS ftl_taf_output.$FS
3216 \$(FC) \$(FFLAGS) \$(FOPTIM) -c ad_taf_output.$FS
3217 \$(FC) \$(FFLAGS) \$(FOPTIM) -c ftl_taf_output.$FS
3218 @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "SVD version" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN > ad_config.template
3219 cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
3220 @-rm -f ad_config.template
3221
3222 EOF
3223
3224 fi
3225
3226 #=== for OpenAD ========================
3227
3228 if test "x$OPENAD" != x ; then
3229
3230 # ============ begin OpenAD specific section ==============
3231
3232 cat >>$MAKEFILE <<EOF
3233
3234 # all the source files linked from the various locations:
3235 ALL_LINKED_FILES= \
3236 \$(F77_SRC_FILES) \
3237 \$(C_SRC_FILES) \
3238 \$(H_SRC_FILES) \
3239 \$(F90_SRC_FILES) \
3240 \$(SPECIAL_FILES)
3241
3242 ifndef OPENADROOT
3243 \$(error "Error: environment variable OPENADROOT not defined!")
3244 endif
3245
3246 ifndef XAIFSCHEMAROOT
3247 \$(error "Error: environment variable XAIFSCHEMAROOT not defined!")
3248 endif
3249
3250 ifndef XAIFBOOSTERROOT
3251 \$(error "Error: environment variable XAIFBOOSTERROOT not defined!")
3252 endif
3253
3254 EOF
3255
3256 echo " Add the source list for common block to module conversion "
3257 echo >> $MAKEFILE
3258 printf "CB2M_F90_SRC_NAMES = " >> $MAKEFILE
3259 for i in `cat ${OAD_CB2M_FILES}` ; do
3260 echo " \\" >> $MAKEFILE
3261 printf " $i" >> $MAKEFILE
3262 done
3263 echo >> $MAKEFILE
3264
3265 echo " Add the source list for AD code generation"
3266 echo >> $MAKEFILE
3267 printf "AD_FILES = " >> $MAKEFILE
3268 for i in `cat ${OAD_CB2M_FILES}` ; do
3269 echo " \\" >> $MAKEFILE
3270 printf " ${i}_mod.f$FS90" >> $MAKEFILE
3271 done
3272 AD_FILES=`cat adSrcFiles.tmp`
3273 for i in $AD_FILES ; do
3274 basename=${i%%.f}
3275 toBeIgnored=`egrep ^$basename'[ ]*' ${OAD_DONT_COMPILE} ${OAD_DONT_TRANSFORM}`
3276 if test -z "$toBeIgnored" ; then
3277 echo " \\" >> $MAKEFILE
3278 printf " $i" >> $MAKEFILE
3279 fi
3280 done
3281 echo >> $MAKEFILE
3282 rm -f adSrcFiles.tmp
3283
3284 cat >>$MAKEFILE <<EOF
3285
3286 adAll: \$(EXE_AD)
3287 .PHONY: adAll
3288
3289 CB2M_F90_PP_SRC_FILES=\$(addsuffix _mod.f$FS90, \$(CB2M_F90_SRC_NAMES))
3290
3291 .PRECIOUS: \$(CB2M_F90_PP_SRC_FILES) \$(NON_AD_F77_SRC_FILES:.F=_cb2m.f$FS90)
3292
3293 .PHONY: adDepend
3294 adDepend: \$(ALL_LINKED_FILES) \$(addsuffix _mod.h, \$(CB2M_F90_SRC_NAMES)) \$(addsuffix _mod.FF90, \$(CB2M_F90_SRC_NAMES)) \$(F77_SRC_FILES:.F=_cb2m.FF90)
3295 \$(MAKEDEPEND) -f \$(MAKEFILE) -o .$FS \$(DEFINES) \$(INCLUDES) \$(F77_SRC_FILES)
3296 \$(TOOLSDIR)/f90mkdepend >> \$(MAKEFILE)
3297 -rm -f makedepend.out
3298
3299 OPENAD_SUPPORT_F90_SRC_FILES = \
3300 w2f__types.F90 \
3301 OAD_active.F90 \
3302 OAD_cp.F90 \
3303 OAD_rev.F90 \
3304 OAD_tape.F90 \
3305 revolve.F90
3306
3307 OPENAD_SUPPORT_C_SRC_FILES = \
3308 iaddr.c \
3309 timeRatio.c
3310
3311 f95_test_mods.f90: \$(OPENAD_SUPPORT_F90_SRC_FILES:F90=$FS90)
3312 cat \$^ > \$@
3313
3314 f95_test.f90: all_mods.xb.x2w.w2f.pp.f$FS90 \$(NON_AD_F77_SRC_FILES:.F=_cb2m.f$FS90) ad_input_code.w2f.pre.xb.x2w.w2f.td.pp.f$FS90
3315 cat \$^ > \$@
3316
3317 f95_test.out: f95_test_mods.f90 f95_test.f90
3318 f95 -fixed -w=unused -maxcontin=132 -c f95_test_mods.f90 > \$@ 2>&1
3319 f95 -fixed -w=unused -maxcontin=132 -c -fixed f95_test.f90 >> \$@ 2>&1
3320
3321 CB2M_AD_FILES=\$(AD_FILES:.f=_cb2m.f$FS90)
3322
3323 AD_OBJ_FILES_S1=\$(OPENAD_SUPPORT_F90_SRC_FILES:.F90=.o) \$(OPENAD_SUPPORT_C_SRC_FILES:.c=.o) OAD_intrinsics_oad.o \$(CB2M_AD_FILES:.f$FS90=_oad.o)
3324
3325 AD_OBJ_FILES_S2=\$(AD_OBJ_FILES_S1) \$(NON_AD_F77_SRC_FILES:.F=_cb2m.o) \$(C_SRC_FILES:.c=.o) \$(F90_SRC_FILES:.F90=.o)
3326
3327 \$(EXE_AD): \$(ALL_LINKED_FILES) \$(addsuffix _mod.h, \$(CB2M_F90_SRC_NAMES)) postProcess.tag \$(AD_OBJ_FILES_S2)
3328 \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(AD_OBJ_FILES_S2) \$(LIBS)
3329
3330 # create sources files modules from header files containing common blocks
3331 %_mod.FF90 : %.h \${OADTOOLS}/cb2mGetModules.csh \${OADTOOLS}/cb2mGetModules.awk
3332 \${OADTOOLS}/cb2mGetModules.csh $< \${OADTOOLS}/cb2mGetModules.awk
3333
3334 # create new header files with USE statements for the new modules made above
3335 %_mod.h : %.h \${OADTOOLS}/cb2mGetHeaders.csh \${OADTOOLS}/cb2mGetHeaders.awk
3336 \${OADTOOLS}/cb2mGetHeaders.csh $< \${OADTOOLS}/cb2mGetHeaders.awk \$(CB2M_F90_SRC_NAMES)
3337
3338 # change the include directives of everybody to refer to the new header files with the USE statements
3339 %_cb2m.FF90 : %.F \${OADTOOLS}/cb2mUseModules.bash
3340 \${OADTOOLS}/cb2mUseModules.bash $< ${MPI}
3341
3342 # makefile debug rule
3343 small_f: \$(CB2M_F90_PP_SRC_FILES)
3344 .PHONY: small_f
3345
3346 ad_output.txt: \$(EXE_AD)
3347 @printf 'linking data files ... '
3348 \$(LN) -f ../input_ad/data* ../input_ad/eedata .
3349 \$(LN) -f ../../global_ocean.90x40x15/input/*.bin .
3350 @printf 'running ... '
3351 @./\$(EXE_AD) > \$@
3352
3353 ad_input_code.f$FS90: \$(CB2M_AD_FILES)
3354 cat \$^ > \$@
3355
3356 # canonicalizer
3357 ad_input_code_sf.pre.f90 : \$(CB2M_AD_FILES)
3358 \${OPENADFORTTK_BASE}/tools/SourceProcessing/preProcess.py --timing --r8 -H -S -o \$@ \$^
3359
3360 # replace stop statements (to avoid the implied unstructured control flow) with print statements
3361 ad_input_code_sf.pre.s2p.f90 : ad_input_code_sf.pre.f90
3362 cat \$< | sed -f \${OADTOOLS}/stop2print.sed > ad_input_code_sf.pre.s2p.f90
3363
3364 # F -> WHIRL
3365 ad_input_code_sf.pre.s2p.B: ad_input_code_sf.pre.s2p.f90
3366 \${OPEN64ROOT}/crayf90/sgi/mfef90 -r8 -z -F ad_input_code_sf.pre.s2p.f90
3367
3368 # WHIRL -> XAIF
3369 ad_input_code_sf.pre.s2p.xaif : ad_input_code_sf.pre.s2p.B
3370 \${OPENADFORTTK}/bin/whirl2xaif -s -n --debug 1 -o \$@ \$<
3371
3372 # XAIF -> XAIF'
3373 ad_input_code_sf.pre.s2p.xb.xaif : ad_input_code_sf.pre.s2p.xaif xaif.xsd xaif_base.xsd xaif_inlinable_intrinsics.xsd xaif_derivative_propagator.xsd xaif_output.xsd
3374 \${XAIFBOOSTERROOT}/xaifBooster/algorithms/BasicBlockPreaccumulationReverse/driver/oadDriver -f -t forward_step -i \$< -c \${XAIFSCHEMAROOT}/schema/examples/inlinable_intrinsics.xaif -o \$@ -I -r
3375
3376 # XAIF' -> WHIRL'
3377 ad_input_code_sf.pre.s2p.xb.x2w.B : ad_input_code_sf.pre.s2p.xb.xaif
3378 \${OPENADFORTTK}/bin/xaif2whirl --debug 1 ad_input_code_sf.pre.s2p.B \$<
3379
3380 # WHIRL' -> F'
3381 ad_input_code_sf.pre.s2p.xb.x2w.w2f.f$FS90: ad_input_code_sf.pre.s2p.xb.x2w.B
3382 \${OPEN64ROOT}/whirl2f/whirl2f -FLIST:ftn_file=\$@ -openad \$<
3383
3384 # insert template directives
3385 ad_input_code_sf.pre.s2p.xb.x2w.w2f.td.f$FS90: ad_input_code_sf.pre.s2p.xb.x2w.w2f.f$FS90 \${OADTOOLS}/insertTemplateDir.bash
3386 \${OADTOOLS}/insertTemplateDir.bash \$< \$@
3387
3388 PPEXTRAS=\$(wildcard \${OADTOOLS}/ad_template.*.F) \${OADTOOLS}/ad_inline.F
3389 # postprocess F'
3390 postProcess.tag: ad_input_code_sf.pre.s2p.xb.x2w.w2f.td.f$FS90 \$(PPEXTRAS:.F=.f) | w2f__types.f90
3391 \${OPENADFORTTK_BASE}/tools/SourceProcessing/postProcess.py --progress --timing --infoUnitFile w2f__types.f90 --outputFormat=fixed --separateOutput --pathSuffix "" --filenameSuffix "_oad" -m r -i \${OADTOOLS}/ad_inline.f \$<
3392 # the target is a placeholder to trigger a single execution of the rule
3393 touch \$@
3394 # put this so make knows about the postprocessing output
3395 OAD_intrinsics_oad.f \$(CB2M_AD_FILES:.f$FS90=_oad.f): postProcess.tag
3396
3397 # link the XAIF schema files
3398 %.xsd:
3399 \$(LN) \${XAIFSCHEMAROOT}/schema/\$@ .
3400
3401 # link the support files:
3402 \$(OPENAD_SUPPORT_F90_SRC_FILES) \$(OPENAD_SUPPORT_C_SRC_FILES):
3403 \$(LN) \${OADTOOLS}/\$@ .
3404
3405 AD_CLEAN += *_mod.h *_mod.F90 *.FF90 *.mod-whirl temp.sed oad_cp.* postProcess.tag \$(PPEXTRAS:.F=.f)
3406
3407 # ============ end OpenAD specific section ==============
3408
3409 EOF
3410
3411 fi
3412
3413 #=========================================
3414
3415 if test "x$EXEHOOK" != x ; then
3416 printf "\nexehook:\n\t%s\n" $EXEHOOK >> $MAKEFILE
3417 fi
3418
3419 echo " Making list of \"exceptions\" that need \".p\" files"
3420 for i in $KPPFILES ; do
3421 base=`echo $i | sed -e 's/\/.*\///g' | sed -e 's/\..*$//g'`
3422 RETVAL=$?
3423 if test "x$RETVAL" != x0 ; then
3424 echo "Error: unable to add file \"$i\" to the exceptions list"
3425 fi
3426 echo "$base.$FS: $base.p" >> $MAKEFILE
3427 done
3428
3429 echo " Making list of NOOPTFILES"
3430 for i in $NOOPTFILES ; do
3431 base=`echo $i | sed -e 's/\/.*\///g' | sed -e 's/\..*$//g'`
3432 RETVAL=$?
3433 if test "x$RETVAL" != x0 ; then
3434 echo "Error: unable to add file \"$i\" to the exceptions list"
3435 fi
3436 echo "$base.o: $base.$FS" >> $MAKEFILE
3437 printf "\t\$(FC) \$(FFLAGS) \$(NOOPTFLAGS) -c \$<\n" >> $MAKEFILE
3438 done
3439
3440 echo " Add rules for links"
3441 cat srclinks.tmp >> $MAKEFILE
3442 rm -f srclinks.tmp
3443
3444 echo " Adding makedepend marker"
3445 printf "\n\n# DO NOT DELETE\n" >> $MAKEFILE
3446
3447 printf "\n=== Done ===\n"
3448
3449 # Create special header files
3450 $BASH $TOOLSDIR/convert_cpp_cmd2defines -bPACKAGES_CONFIG_H "Disabled packages:" $DISABLED_PACKAGES " " "Enabled packages:" $ENABLED_PACKAGES > $PACKAGES_DOT_H".tmp"
3451 if test ! -f $PACKAGES_DOT_H ; then
3452 mv -f $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H
3453 else
3454 cmp $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H > /dev/null 2>&1
3455 RETVAL=$?
3456 if test "x$RETVAL" = x0 ; then
3457 rm -f $PACKAGES_DOT_H".tmp"
3458 else
3459 mv -f $PACKAGES_DOT_H $PACKAGES_DOT_H".bak"
3460 mv -f $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H
3461 fi
3462 fi
3463 if test ! -f AD_CONFIG.h ; then
3464 $BASH $TOOLSDIR/convert_cpp_cmd2defines "Default version" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN > AD_CONFIG.h
3465 fi
3466
3467 # Write the "state" for future records
3468 if test "x$DUMPSTATE" = xt ; then
3469 printf "" > genmake_state
3470 for i in $gm_state ; do
3471 t1="t2=\$$i"
3472 eval $t1
3473 echo "$i='$t2'" | sed -e 's/ */ /g' >> genmake_state
3474 done
3475 fi

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