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Revision 1.227 - (show annotations) (download)
Thu Nov 3 22:46:47 2011 UTC (7 years, 10 months ago) by utke
Branch: MAIN
CVS Tags: checkpoint63h, checkpoint63e, checkpoint63f, checkpoint63g
Changes since 1.226: +2 -2 lines
require this flag now

1 #! /usr/bin/env bash
2 #
3 # $Header: /u/gcmpack/MITgcm/tools/genmake2,v 1.226 2011/09/30 20:03:10 jmc Exp $
4 # $Name: $
5 #
6 # Makefile generator for MITgcm UV codes
7 # created by cnh 03/98
8 # adapted by aja 06/98
9 # modified by aja 01/00
10 # rewritten in bash by eh3 08/03
11
12 # Explain usage
13 usage() {
14 cat <<EOF
15
16 Usage: "$0" [OPTIONS]
17 where [OPTIONS] can be:
18
19 -help | --help | -h | --h
20 Print this help message and exit.
21
22 -adoptfile NAME | --adoptfile NAME | -adof NAME | --adof NAME
23 -adoptfile=NAME | --adoptfile=NAME | -adof=NAME | --adof=NAME
24 Use "NAME" as the adoptfile. By default, the file at
25 "tools/adjoint_options/adjoint_default" will be used.
26
27 -nooptfile | --nooptfile
28 -optfile NAME | --optfile NAME | -of NAME | --of NAME
29 -optfile=NAME | --optfile=NAME | -of=NAME | --of=NAME
30 Use "NAME" as the optfile. By default, an attempt will be
31 made to find an appropriate "standard" optfile in the
32 tools/build_options/ directory.
33
34 -pdepend NAME | --pdepend NAME
35 -pdepend=NAME | --pdepend=NAME
36 Get package dependency information from "NAME".
37
38 -pgroups NAME | --pgroups NAME
39 -pgroups=NAME | --pgroups=NAME
40 Get the package groups information from "NAME".
41
42 -bash NAME
43 Explicitly specify the Bourne or BASH shell to use
44
45 -make NAME | -m NAME
46 --make=NAME | -m=NAME
47 Use "NAME" for the MAKE program. The default is "make" but
48 many platforms, "gmake" is the preferred choice.
49
50 -makefile NAME | -mf NAME
51 --makefile=NAME | -mf=NAME
52 Call the makefile "NAME". The default is "Makefile".
53
54 -makedepend NAME | -md NAME
55 --makedepend=NAME | -md=NAME
56 Use "NAME" for the MAKEDEPEND program.
57
58 -rootdir NAME | --rootdir NAME | -rd NAME | --rd NAME
59 -rootdir=NAME | --rootdir=NAME | -rd=NAME | --rd=NAME
60 Specify the location of the MITgcm ROOTDIR as "NAME".
61 By default, genamke will try to find the location by
62 looking in parent directories (up to the 5th parent).
63
64 -mods NAME | --mods NAME | -mo NAME | --mo NAME
65 -mods=NAME | --mods=NAME | -mo=NAME | --mo=NAME
66 Here, "NAME" specifies a list of directories that are
67 used for additional source code. Files found in the
68 "mods list" are given preference over files of the same
69 name found elsewhere.
70
71 -disable NAME | --disable NAME
72 -disable=NAME | --disable=NAME
73 Here "NAME" specifies a list of packages that we don't
74 want to use. If this violates package dependencies,
75 genamke will exit with an error message.
76
77 -enable NAME | --enable NAME
78 -enable=NAME | --enable=NAME
79 Here "NAME" specifies a list of packages that we wish
80 to specifically enable. If this violates package
81 dependencies, genamke will exit with an error message.
82
83 -standarddirs NAME | --standarddirs NAME
84 -standarddirs=NAME | --standarddirs=NAME
85 Here, "NAME" specifies a list of directories to be
86 used as the "standard" code.
87
88 -fortran NAME | --fortran NAME | -fc NAME | --fc NAME
89 -fc=NAME | --fc=NAME
90 Use "NAME" as the fortran compiler. By default, genmake
91 will search for a working compiler by trying a list of
92 "usual suspects" such as g77, f77, etc.
93
94 -cc NAME | --cc NAME | -cc=NAME | --cc=NAME
95 Use "NAME" as the C compiler. By default, genmake
96 will search for a working compiler by trying a list of
97 "usual suspects" such as gcc, c89, cc, etc.
98
99 -use_real4 | -use_r4 | -ur4 | --use_real4 | --use_r4 | --ur4
100 Use "real*4" type for _RS variable (#undef REAL4_IS_SLOW)
101 *only* works if CPP_EEOPTIONS.h allows this.
102
103 -ignoretime | -ignore_time | --ignoretime | --ignore_time
104 Ignore all the "wall clock" routines entirely. This will
105 not in any way hurt the model results -- it simply means
106 that the code that checks how long the model spends in
107 various routines will give junk values.
108
109 -ts | --ts
110 Produce timing information per timestep
111 -papis | --papis
112 Produce summary MFlop/s (and IPC) with PAPI per timestep
113 -pcls | --pcls
114 Produce summary MFlop/s etc. with PCL per timestep
115 -foolad | --foolad
116 Fool the AD code generator
117 -papi | --papi
118 Performance analysis with PAPI
119 -pcl | --pcl
120 Performance analysis with PCL
121 -hpmt | --hpmt
122 Performance analysis with the HPM Toolkit
123
124 -ieee | --ieee
125 use IEEE numerics. Note that this option *only* works
126 if it is supported by the OPTFILE that is being used.
127 -devel | --devel
128 Add additional warning and debugging flags for development
129 (if supported by the OPTFILE); also switch to IEEE numerics.
130 -gsl | --gsl
131 Use GSL to control floating point rounding and precision
132
133 -mpi | --mpi
134 Include MPI header files and link to MPI libraries
135 -mpi=PATH | --mpi=PATH
136 Include MPI header files and link to MPI libraries using MPI_ROOT
137 set to PATH. i.e. Include files from \$PATH/include, link to libraries
138 from \$PATH/lib and use binaries from \$PATH/bin.
139
140 -omp | --omp
141 Activate OpenMP code + use Compiler option OMPFLAG
142 -omp=OMPFLAG | --omp=OMPFLAG
143 Activate OpenMP code + use Compiler option OMPFLAG
144
145 -es | --es | -embed-source | --embed-source
146 Embed a tarball containing the full source code
147 (including the Makefile, etc.) used to build the
148 executable [off by default]
149
150 -ds | --ds
151 Report genmake internal variables status (DUMPSTATE)
152 to file "genmake_state" (for debug purpose)
153
154 While it is most often a single word, the "NAME" variables specified
155 above can in many cases be a space-delimited string such as:
156
157 --enable pkg1 --enable 'pkg1 pkg2' --enable 'pkg1 pkg2 pkg3'
158 -mods=dir1 -mods='dir1' -mods='dir1 dir2 dir3'
159 -foptim='-Mvect=cachesize:512000,transform -xtypemap=real:64,double:64,integer:32'
160
161 which, depending upon your shell, may need to be single-quoted.
162
163 For more detailed genmake documentation, please see:
164
165 http://mitgcm.org/public/devel_HOWTO/
166
167 EOF
168
169 exit 1
170 }
171
172 # Search for particular CPP #cmds associated with packages
173 # usage: test_for_package_in_cpp_options CPP_file package_name
174 test_for_package_in_cpp_options() {
175 cpp_options=$1
176 pkg=$2
177 test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_$pkg[ ]"
178 test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_$pkg[ ]"
179 test_for_string_in_file $cpp_options "^[ ]*#define.*DISABLE_$pkg[ ]"
180 test_for_string_in_file $cpp_options "^[ ]*#undef.*DISABLE_$pkg[ ]"
181 test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_$pkg$"
182 test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_$pkg$"
183 test_for_string_in_file $cpp_options "^[ ]*#define.*DISABLE_$pkg$"
184 test_for_string_in_file $cpp_options "^[ ]*#undef.*DISABLE_$pkg$"
185 }
186
187 # Search for particular CPP #cmds associated with MPI
188 # usage: test_for_mpi_in_cpp_eeoptions CPP_file
189 test_for_mpi_in_cpp_eeoptions() {
190 cpp_options=$1
191 test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_USE_MPI[ ]"
192 test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_USE_MPI[ ]"
193 test_for_string_in_file $cpp_options "^[ ]*#define.*ALWAYS_USE_MPI[ ]"
194 test_for_string_in_file $cpp_options "^[ ]*#undef.*ALWAYS_USE_MPI[ ]"
195 test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_USE_MPI$"
196 test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_USE_MPI$"
197 test_for_string_in_file $cpp_options "^[ ]*#define.*ALWAYS_USE_MPI$"
198 test_for_string_in_file $cpp_options "^[ ]*#undef.*ALWAYS_USE_MPI$"
199 }
200
201 # Search for particular string in a file. Return 1 if detected, 0 if not
202 # usage: test_for_string_in_file file string
203 test_for_string_in_file() {
204 file=$1
205 strng=$2
206 grep -i "$strng" $file > /dev/null 2>&1
207 RETVAL=$?
208 if test "x${RETVAL}" = x0 ; then
209 printf "Error: In $file there is an illegal line: "
210 grep -i "$strng" $file
211 exit 99
212 fi
213 return 0
214 }
215
216 # Read the $ROOTDIR/pkg/pkg_groups file and expand any references to
217 # the package list.
218 expand_pkg_groups() {
219 new_packages=
220 if test -r $PKG_GROUPS ; then
221 cat $PKG_GROUPS | sed -e 's/#.*$//g' | sed -e 's/:/ : /g' > ./p1.tmp
222 cat ./p1.tmp | $AWK '(NF>2 && $2==":"){ print $0 }' > ./p2.tmp
223 matched=0
224 for i in $PACKAGES ; do
225 line=`grep "^ *$i" ./p2.tmp`
226 RETVAL=$?
227 if test "x$RETVAL" = x0 ; then
228 matched=1
229 replace=`echo $line | $AWK '{ $1=""; $2=""; print $0 }'`
230 echo " replacing \"$i\" with:$replace"
231 new_packages="$new_packages $replace"
232 else
233 new_packages="$new_packages $i"
234 fi
235 done
236 PACKAGES=$new_packages
237 rm -f ./p[1,2].tmp
238 return $matched
239 else
240 echo "Warning: can't read package groups definition file: $PKG_GROUPS"
241 fi
242 }
243
244 # Check for broken environments (eg. cygwin, MacOSX w/HFS+) that
245 # cannot distinguish [*.F/*.F90] from [*.f/*.f90] files.
246 check_for_broken_Ff() {
247 # Do we have defaults for $FS and/or $FS90 ?
248 tfs=f
249 tfs9=f90
250 if test "x$FS" != x ; then
251 tfs="$FS"
252 fi
253 if test "x$FS90" != x ; then
254 tfs9="$FS90"
255 fi
256
257 # First check the ability to create a *.F/.f pair.
258 cat <<EOF >> genmake_hello.F
259 program hello
260 write(*,*) 'hi'
261 stop
262 end
263 EOF
264 cp genmake_hello.F "genmake_hello."$tfs > /dev/null 2>&1
265 RETVAL=$?
266 if test "x$RETVAL" != x0 ; then
267 if test "x$FS" = x ; then
268 FS='for'
269 FS90='fr9'
270 check_for_broken_Ff
271 else
272 cat <<EOF 2>&1
273 ERROR: Your file system cannot distinguish between *.F and *.f files
274 (fails the "cp" test) and this program cannot find a suitable
275 replacement extension. Please try a different build environment or
276 contact the <MITgcm-support@mitgcm.org> list for help.
277
278 EOF
279 exit -1
280 fi
281 return
282 fi
283 rm -f genmake_hello.*
284
285 # Check the ability of ${MAKE} and ${LN} to use the current set
286 # of extensions.
287 cat <<EOF >> genmake_hello.F
288 program hello
289 write(*,*) 'hi'
290 stop
291 end
292 EOF
293 test -f $MAKEFILE && mv -f $MAKEFILE $MAKEFILE".tst"
294 cat <<EOF >> $MAKEFILE
295 .SUFFIXES:
296 .SUFFIXES: .$tfs .F
297 .F.$tfs:
298 $LN \$< \$@
299 EOF
300 $MAKE "genmake_hello."$tfs > /dev/null 2>&1
301 RETVAL=$?
302 if test "x$RETVAL" != x0 -o ! -f "genmake_hello."$tfs ; then
303 if test "x$FS" = x ; then
304 FS='for'
305 FS90='fr9'
306 check_for_broken_Ff
307 else
308 cat <<EOF 2>&1
309 ERROR: Your file system cannot distinguish between *.F and *.f files
310 (fails the "make/ln" test) and this program cannot find a suitable
311 replacement extension. Please try a different build environment or
312 contact the <MITgcm-support@mitgcm.org> list for help.
313
314 EOF
315 exit -1
316 return
317 fi
318 fi
319 rm -f genmake_hello.* $MAKEFILE
320 test -f $MAKEFILE".tst" && mv -f $MAKEFILE".tst" $MAKEFILE
321
322 # If we make it here, use the extensions
323 FS=$tfs
324 FS90=$tfs9
325 return
326 }
327
328 look_for_makedepend() {
329
330 # The "original" makedepend is part of the Imake system that is
331 # most often distributed with XFree86 or with an XFree86 source
332 # package. As a result, many machines (eg. generic Linux) do not
333 # have a system-default "makedepend" available. For those
334 # systems, we have two fall-back options:
335 #
336 # 1) a makedepend implementation shipped with the cyrus-imapd
337 # package: ftp://ftp.andrew.cmu.edu/pub/cyrus-mail/
338 #
339 # 2) a known-buggy xmakedpend shell script
340 #
341 # So the choices are, in order:
342 #
343 # 1) use the user-specified program
344 # 2) use a system-wide default
345 # 3) locally build and use the cyrus implementation
346 # 4) fall back to the buggy local xmakedpend script
347 #
348 echo >> $LOGFILE
349 echo "running: look_for_makedepend()" >> $LOGFILE
350 if test "x${MAKEDEPEND}" != x ; then
351 echo "${MAKEDEPEND}" | grep -i cyrus > /dev/null 2>&1
352 RETVAL=$?
353 if test x"$RETVAL" = x0 ; then
354 build_cyrus_makedepend
355 RETVAL=$?
356 if test "x$RETVAL" != x0 ; then
357 echo "WARNING: unable to build cyrus-makedepend. Try 'makedepend'"
358 MAKEDEPEND=
359 fi
360 else
361 echo "${MAKEDEPEND}" | grep 'tools.xmakedepend' > /dev/null 2>&1
362 RETVAL=$?
363 if test "x$RETVAL" = x0 ; then
364 MAKEDEPEND='$(TOOLSDIR)/xmakedepend'
365 fi
366 echo " --> MAKEDEPEND=${MAKEDEPEND}" >> $LOGFILE
367 fi
368 fi
369 if test "x${MAKEDEPEND}" = x ; then
370 which makedepend > /dev/null 2>&1
371 RV0=$?
372 test -f $MAKEFILE && mv -f $MAKEFILE $MAKEFILE".tst"
373 # echo 'MAKEFILE="'$MAKEFILE'"'
374 cat <<EOF >> $MAKEFILE
375 # THIS IS A TEST MAKEFILE GENERATED BY "genmake2"
376 #
377 # Some "makedepend" implementations will die if they cannot
378 # find a Makefile -- so this file is here to gives them an
379 # empty one to find and parse.
380 EOF
381 cat <<EOF >> genmake_tc.f
382 program test
383 write(*,*) 'test'
384 stop
385 end
386 EOF
387 makedepend genmake_tc.f > /dev/null 2>&1
388 RV1=$?
389 test -f $MAKEFILE && rm -f $MAKEFILE
390 test -f $MAKEFILE".tst" && mv -f $MAKEFILE".tst" $MAKEFILE
391 if test "x${RV0}${RV1}" = x00 ; then
392 MAKEDEPEND=makedepend
393 echo " --> set MAKEDEPEND=${MAKEDEPEND}" >> $LOGFILE
394 else
395 echo " system-default makedepend not found. Try to build cyrus-makedepend"
396 # Try to build the cyrus implementation
397 build_cyrus_makedepend
398 RETVAL=$?
399 if test "x$RETVAL" != x0 ; then
400 echo "WARNING: unable to build cyrus-makedepend. Use local xmakedepend"
401 MAKEDEPEND='$(TOOLSDIR)/xmakedepend'
402 echo " --> set MAKEDEPEND=${MAKEDEPEND}" >> $LOGFILE
403 fi
404 fi
405 fi
406 }
407
408 build_cyrus_makedepend() {
409 echo >> $LOGFILE
410 echo "running: build_cyrus_makedepend()" >> $LOGFILE
411 rm -f ./genmake_cy_md
412 (
413 cd $ROOTDIR/tools/cyrus-imapd-makedepend \
414 && ./configure > /dev/null 2>&1 \
415 && make > /dev/null 2>&1
416 if test -x ./makedepend.exe ; then
417 $LN ./makedepend.exe ./makedepend
418 fi
419 ./makedepend ifparser.c > /dev/null 2>&1 \
420 && echo "true"
421 ) > ./genmake_cy_md
422 grep true ./genmake_cy_md > /dev/null 2>&1
423 RETVAL=$?
424 rm -f ./genmake_cy_md
425 if test "x$RETVAL" = x0 ; then
426 MAKEDEPEND='$(TOOLSDIR)/cyrus-imapd-makedepend/makedepend'
427 echo " --> set MAKEDEPEND=${MAKEDEPEND}" >> $LOGFILE
428 return 0
429 else
430 echo "WARNING: fail to build cyrus-imapd-makedepend" >> $LOGFILE
431 return 1
432 fi
433 }
434
435 build_embed_encode()
436 {
437 printf " building the embed-encode utility... "
438 if test ! -e "$ROOTDIR/tools/embed_encode/encode_files" ; then
439 if test ! -d "$ROOTDIR/tools/embed_encode" ; then
440 echo
441 echo " Error: can't locate \"$ROOTDIR/tools/embed_encode\""
442 echo
443 EMBED_SRC=f
444 return 1
445 fi
446 clist="cc gcc c89 $CC"
447 for ic in $clist ; do
448 comm="$ic -o encode_files encode_files.c"
449 ( cd $ROOTDIR/tools/embed_encode && $comm ) > /dev/null 2>&1
450 RETVAL=$?
451 if test "x$RETVAL" = x0 ; then
452 echo "OK"
453 DEFINES="$DEFINES -DHAVE_EMBED_SRC"
454 return 0
455 fi
456 done
457 echo
458 echo " Error: unable to build $ROOTDIR/embed_encode/encode_files"
459 echo " so it has been disabled"
460 echo
461 EMBED_SRC=f
462 return 1
463 fi
464 echo "OK"
465 DEFINES="$DEFINES -DHAVE_EMBED_SRC"
466 }
467
468 # look for possible C compilers
469 look_for_C_compilers() {
470 echo >> $LOGFILE
471 echo "running: look_for_C_compilers()" >> $LOGFILE
472 rm -f ./genmake_hello.c ./genmake_hello
473 cat >> genmake_hello.c << EOF
474 #include <stdio.h>
475 int main(int argc, char **argv) {
476 printf("Hello!\n");
477 return 0;
478 }
479 EOF
480 tmp="$MITGCM_CC $CC gcc c89 cc c99 mpicc icc"
481 p_CC=
482 for c in $tmp ; do
483 COMM="$c $CFLAGS -o genmake_hello genmake_hello.c"
484 echo $COMM >> $LOGFILE
485 $COMM >> $LOGFILE 2>&1
486 RETVAL=$?
487 if test "x${RETVAL}" = x0 ; then
488 echo " $c test successful" >> $LOGFILE
489 p_CC="$p_CC $c"
490 fi
491 done
492 rm -f ./genmake_hello.c ./genmake_hello
493 if test "x${p_CC}" = x ; then
494 cat 1>&2 <<EOF
495
496 Error: No C compilers were found in your path. Please specify one using:
497
498 1) an "optfile" on (eg. "-optfile=path/to/OPTFILE"),
499 2) the CC or MITGCM_CC environment variables.
500
501 EOF
502 exit 1
503 else
504 echo " The possible C compilers found in your path are: $p_CC" | tee -a $LOGFILE
505 if test "x$CC" = x ; then
506 CC=`echo $p_CC | $AWK '{print $1}'`
507 echo " Setting C compiler to: "$CC
508 fi
509 fi
510 echo " --> set CC='$CC'" >> $LOGFILE
511 }
512
513 # Guess possible config options for this host
514 find_possible_optfile() {
515
516 echo >> $LOGFILE
517 echo "running: find_possible_optfile()" >> $LOGFILE
518 tmp1=`uname`"_"`uname -m`
519 tmp2=`echo $tmp1 | sed -e 'y/ABCDEFGHIJKLMNOPQRSTUVWXYZ/abcdefghijklmnopqrstuvwxyz/'`
520 tmp3=`echo $tmp2 | sed -e 's/power macintosh/ppc/'`
521 tmp1=`echo $tmp3 | sed -e 's|x86_64|amd64|'`
522 tmp2=`echo $tmp1 | sed -e 's/i[3-6]86/ia32/' | sed -e 's/athlon/ia32/'`
523 tmp3=`echo $tmp2 | sed -e 's/cray sv1/craysv1/'`
524 PLATFORM=$tmp3
525 echo $PLATFORM | grep cygwin > /dev/null 2>&1 && PLATFORM=cygwin_ia32
526 OFLIST=`(cd $ROOTDIR/tools/build_options; ls | grep "^$PLATFORM")`
527 echo " The platform appears to be: $PLATFORM" | tee -a $LOGFILE
528
529 #================================================================
530 # look for possible FORTRAN compilers
531 echo " look for possible FORTRAN compilers" >> $LOGFILE
532 tmp="$MITGCM_FC $FC efc gfortran g77 f77 pgf77 pgf95 ifc ifort f90 f95 mpif77 mpf77 mpxlf95 g95"
533 p_FC=
534 rm -f ./genmake_hello.f
535 cat >> genmake_hello.f <<EOF
536 program hello
537 do i=1,3
538 print *, 'hello world : ', i
539 enddo
540 end
541 EOF
542 for f in $tmp ; do
543 COMM="$f -o genmake_hello genmake_hello.f"
544 echo $COMM >> $LOGFILE
545 $COMM >> $LOGFILE 2>&1
546 RETVAL=$?
547 if test "x${RETVAL}" = x0 ; then
548 echo " $f test successful" >> $LOGFILE
549 p_FC="$p_FC $f"
550 fi
551 done
552 rm -f ./genmake_hello.f ./genmake_hello
553 if test "x${p_FC}" = x ; then
554 cat 1>&2 <<EOF
555
556 Error: No Fortran compilers were found in your path. Please specify one using:
557
558 1) an "optfile" on (eg. "-optfile=path/to/OPTFILE"),
559 2) a command-line option (eg. "-fc NAME"), or
560 3) the FC or MITGCM_FC environment variables.
561
562 EOF
563 exit 1
564 else
565 echo " The possible FORTRAN compilers found in your path are: $p_FC" | tee -a $LOGFILE
566 fi
567
568 # Use the first of the compilers found in the current PATH
569 # that has a correctly-named optfile
570 if test "x$OPTFILE" = x -a "x$FC" = x ; then
571 for i in $p_FC ; do
572 OPTFILE=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$i
573 if test -r $OPTFILE ; then
574 echo " Setting OPTFILE to: "$OPTFILE | tee -a $LOGFILE
575 break
576 fi
577 done
578 fi
579
580 if test "x$OPTFILE" = x ; then
581 OPTFILE=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$FC
582 if test ! -r $OPTFILE ; then
583 echo " I looked for the file "$OPTFILE" but did not find it"
584 fi
585 fi
586
587 if test "x$OPTFILE" = x ; then
588 cat 1>&2 <<EOF
589
590 Error: No options file was found in: $ROOTDIR/tools/build_options/
591 that matches this platform ("$PLATFORM") and the compilers found in
592 your path. Please specify an "optfile" using:
593
594 1) the command line (eg. "-optfile=path/to/OPTFILE"), or
595 2) the MITGCM_OF environment variable.
596
597 If you need help, please contact the developers at <MITgcm-support@mitgcm.org>.
598
599 EOF
600 exit 1
601 fi
602
603 # # look for possible MPI libraries
604 # mpi_libs=
605 # mpi_fort=`which mpif77 2>/dev/null`
606 # RETVAL=$?
607 # if test "x${RETVAL}" = x0 ; then
608 # cat >>test.f <<EOF
609 # PROGRAM HELLO
610 # DO 10, I=1,10
611 # PRINT *,'Hello World'
612 # 10 CONTINUE
613 # STOP
614 # END
615 # EOF
616 # eval "$mpi_fort -showme test.f > out"
617 # RETVAL=$?
618 # if test "x${RETVAL}" = x0 ; then
619 # a=`cat out`
620 # for i in $a ; do
621 # case $i in
622 # -*)
623 # mpi_libs="$mpi_libs $i" ;;
624 # esac
625 # done
626 # echo "The MPI libs appear to be:"
627 # echo " "$mpi_libs
628 # fi
629 # rm -f test.f out
630 # fi
631 }
632
633 # Parse the package dependency information
634 get_pdepend_list() {
635
636 # strip the comments and then convert the dependency file into
637 # two arrays: PNAME, DNAME
638 cat $1 | sed -e 's/#.*$//g' \
639 | $AWK 'BEGIN{nn=-1;} (NF>0){ for(i=2;i<=NF;i++){nn++; print "PNAME_"nn"="$1"\nDNAME_"nn"="$i}} END{print "nname="nn}' \
640 > ./.pd_tmp
641 RETVAL=$?
642 if test ! "x${RETVAL}" = x0 ; then
643 echo "Error: unable to parse package dependencies -- please check PKG_DEPEND=\"$1\""
644 exit 1
645 fi
646 . ./.pd_tmp
647 rm -f ./.pd_tmp
648 }
649
650 # Build a CPP macro to automate calling C routines from FORTRAN
651 get_fortran_c_namemangling() {
652
653 #echo "FC_NAMEMANGLE = \"$FC_NAMEMANGLE\""
654 if test ! "x$FC_NAMEMANGLE" = x ; then
655 return 0
656 fi
657 echo " running: get_fortran_c_namemangling()" >> $LOGFILE
658
659 default_nm="#define FC_NAMEMANGLE(X) X ## _"
660
661 cat > genmake_test.c <<EOF
662 void tcall( char * string ) { tsub( string ); }
663 EOF
664 COMM="$CC $CFLAGS -c genmake_test.c"
665 echo ' '$COMM >> $LOGFILE
666 $COMM >> $LOGFILE 2>&1
667 RETVAL=$?
668 if test "x$RETVAL" != x0 ; then
669 FC_NAMEMANGLE=$default_nm
670 cat <<EOF>> $LOGFILE
671
672 WARNING: C test compile fails
673 WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
674 WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here
675 EOF
676 return 1
677 fi
678 c_tcall=`nm genmake_test.o 2>/dev/null | grep 'T ' | grep tcall | cut -d ' ' -f 3`
679 RETVAL=$?
680 if test "x$RETVAL" != x0 ; then
681 FC_NAMEMANGLE=$default_nm
682 cat <<EOF>> $LOGFILE
683
684 WARNING: The "nm" command failed.
685 WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
686 WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here
687 EOF
688 return 1
689 fi
690 cat > genmake_tcomp.$FS <<EOF
691 subroutine tcall( string )
692 character*(*) string
693 call tsub( string )
694 end
695 EOF
696 COMM="$FC $FFLAGS -c genmake_tcomp.$FS"
697 echo ' '$COMM >> $LOGFILE
698 $COMM >> $LOGFILE 2>&1
699 RETVAL=$?
700 if test "x$RETVAL" != x0 ; then
701 FC_NAMEMANGLE=$default_nm
702 cat <<EOF>> $LOGFILE
703
704 WARNING: FORTRAN test compile fails -- please see '$LOGFILE'
705 WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
706 WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here.
707 EOF
708 return 1
709 fi
710 f_tcall=`nm genmake_tcomp.o 2>/dev/null | grep 'T ' | grep tcall | cut -d ' ' -f 3`
711 RETVAL=$?
712 if test "x$RETVAL" != x0 ; then
713 FC_NAMEMANGLE=$default_nm
714 cat <<EOF>> $LOGFILE
715
716 WARNING: The "nm" command failed.
717 WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
718 WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here.
719 EOF
720 return 1
721 fi
722
723 c_a=`echo $c_tcall | sed -e 's|tcall|Y Y|' | cut -d ' ' -f 1 | sed -e 's|Y||'`
724 f_a=`echo $f_tcall | sed -e 's|tcall|Y Y|' | cut -d ' ' -f 1 | sed -e 's|Y||'`
725 c_b=`echo $c_tcall | sed -e 's|tcall|Y Y|' | cut -d ' ' -f 2 | sed -e 's|Y||'`
726 f_b=`echo $f_tcall | sed -e 's|tcall|Y Y|' | cut -d ' ' -f 2 | sed -e 's|Y||'`
727
728 nmangle="X"
729 if test "x$c_a" != "x$f_a" ; then
730 comm="echo x$f_a | sed -e 's|x$c_a||'"
731 a=`eval $comm`
732 nmangle="$a ## $nmangle"
733 fi
734 if test "x$c_b" != "x$f_b" ; then
735 comm="echo x$f_b | sed -e 's|x$c_b||'"
736 b=`eval $comm`
737 nmangle="$nmangle ## $b"
738 fi
739
740 FC_NAMEMANGLE="#define FC_NAMEMANGLE(X) $nmangle"
741
742 # cleanup the testing files
743 rm -f genmake_tcomp.* genmake_test.*
744
745 echo " --> set FC_NAMEMANGLE='$FC_NAMEMANGLE'" >> $LOGFILE
746 }
747
748 check_HAVE_CLOC() {
749 echo >> $LOGFILE
750 echo "running: check_HAVE_CLOC()" >> $LOGFILE
751 get_fortran_c_namemangling
752 cat <<EOF > genmake_tc_1.c
753 $FC_NAMEMANGLE
754 #include <stdio.h>
755 #include <stdlib.h>
756 #include <unistd.h>
757 #include <assert.h>
758 #include <sys/time.h>
759 void FC_NAMEMANGLE(cloc) ( double *curtim )
760 {
761 struct timeval tv1;
762 gettimeofday(&tv1 , (void *)NULL );
763 *curtim = (double)((tv1.tv_usec)+(tv1.tv_sec)*1.E6);
764 *curtim = *curtim/1.E6;
765 }
766 EOF
767 COMM="$CC $CFLAGS -c genmake_tc_1.c"
768 echo $COMM >> $LOGFILE
769 $COMM >> $LOGFILE 2>&1
770 RET_C=$?
771 cat <<EOF > genmake_tc_2.$FS
772 program hello
773 REAL*8 wtime
774 external cloc
775 call cloc(wtime)
776 print *," HELLO WORLD", wtime
777 end
778 EOF
779 COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"
780 echo $COMM >> $LOGFILE
781 $COMM >> $LOGFILE 2>&1
782 RET_F=$?
783 test -x ./genmake_tc && ./genmake_tc >> $LOGFILE 2>&1
784 RETVAL=$?
785 if test "x$RETVAL" = x0 ; then
786 HAVE_CLOC=t
787 DEFINES="$DEFINES -DHAVE_CLOC"
788 fi
789 rm -f genmake_tc*
790 echo " --> set HAVE_CLOC='$HAVE_CLOC'" >> $LOGFILE
791 }
792
793 check_HAVE_SIGREG() {
794 if test ! "x$HAVE_SIGREG" = x ; then
795 return
796 fi
797 echo >> $LOGFILE
798 echo "running: check_HAVE_SIGREG()" >> $LOGFILE
799 get_fortran_c_namemangling
800 cat <<EOF > genmake_tc_1.c
801 $FC_NAMEMANGLE
802 #include <stdlib.h>
803 #include <stdio.h>
804 #include <signal.h>
805 #include <errno.h>
806 #include <ucontext.h>
807
808 int * ip;
809
810 static void killhandler(
811 unsigned int sn, siginfo_t si, struct ucontext *sc )
812 {
813 *ip = *ip + 1;
814 return;
815 }
816
817 void FC_NAMEMANGLE(sigreg) (int * aip)
818 {
819 struct sigaction s;
820 ip = aip;
821 s.sa_flags = SA_SIGINFO;
822 s.sa_sigaction = (void *)killhandler;
823 if(sigaction (SIGTERM,&s,(struct sigaction *)NULL)) {
824 printf("Sigaction returned error = %d\n", errno);
825 exit(0);
826 }
827 return;
828 }
829 EOF
830 COMM="$CC $CFLAGS -c genmake_tc_1.c"
831 echo $COMM >> $LOGFILE
832 $COMM >> $LOGFILE 2>&1
833 RET_C=$?
834 cat <<EOF > genmake_tc_2.$FS
835 program hello
836 integer anint
837 common /iv/ anint
838 external sigreg
839 call sigreg(anint)
840 end
841 EOF
842 cat genmake_tc_2.$FS >> $LOGFILE
843 COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"
844 echo $COMM >> $LOGFILE
845 $COMM >> $LOGFILE 2>&1
846 RETVAL=$?
847 if test "x$RETVAL" = x0 ; then
848 HAVE_SIGREG=t
849 DEFINES="$DEFINES -DHAVE_SIGREG"
850 fi
851 rm -f genmake_tc*
852 echo " --> set HAVE_SIGREG='$HAVE_SIGREG'" >> $LOGFILE
853 }
854
855 check_HAVE_SETRLSTK() {
856 if test "x$HAVE_SETRLSTK" = xt ; then
857 DEFINES="$DEFINES -DHAVE_SETRLSTK"
858 return
859 fi
860 if test ! "x$HAVE_SETRLSTK" = x ; then
861 return
862 fi
863 echo >> $LOGFILE
864 echo "running: check_HAVE_SETRLSTK()" >> $LOGFILE
865 get_fortran_c_namemangling
866 cat <<EOF > genmake_tc_1.c
867 $FC_NAMEMANGLE
868 #include <sys/time.h>
869 #include <sys/resource.h>
870 #include <unistd.h>
871 void FC_NAMEMANGLE(setrlstk) ()
872 {
873 struct rlimit rls;
874 rls.rlim_cur = RLIM_INFINITY;
875 rls.rlim_max = RLIM_INFINITY;
876 setrlimit(RLIMIT_STACK, &rls);
877 return;
878 }
879 EOF
880 COMM="$CC $CFLAGS -c genmake_tc_1.c"
881 echo $COMM >> $LOGFILE
882 $COMM >> $LOGFILE 2>&1
883 RET_C=$?
884 cat <<EOF > genmake_tc_2.$FS
885 program hello
886 external setrlstk
887 call setrlstk()
888 end
889 EOF
890 cat genmake_tc_2.$FS >> $LOGFILE
891 COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"
892 echo $COMM >> $LOGFILE
893 $COMM >> $LOGFILE 2>&1
894 RETVAL=$?
895 if test "x$RETVAL" = x0 ; then
896 HAVE_SETRLSTK=t
897 DEFINES="$DEFINES -DHAVE_SETRLSTK"
898 fi
899 rm -f genmake_tc*
900 echo " --> set HAVE_SETRLSTK='$HAVE_SETRLSTK'" >> $LOGFILE
901 }
902
903 check_HAVE_STAT() {
904 echo >> $LOGFILE
905 echo "running: check_HAVE_STAT()" >> $LOGFILE
906 get_fortran_c_namemangling
907 cat <<EOF > genmake_tc_1.c
908 $FC_NAMEMANGLE
909 #include <stdio.h>
910 #include <stdlib.h>
911 #include <unistd.h>
912 #include <sys/stat.h>
913 #include <sys/types.h>
914 void FC_NAMEMANGLE(tfsize) ( int *nbyte )
915 {
916 char name[512];
917 struct stat astat;
918
919 name[0] = 'a'; name[1] = '\0';
920 if (! stat(name, &astat))
921 *nbyte = (int)(astat.st_size);
922 else
923 *nbyte = -1;
924 }
925 EOF
926 COMM="$CC $CFLAGS -c genmake_tc_1.c"
927 echo $COMM >> $LOGFILE
928 $COMM >> genmake_tc.log 2>&1
929 RET_C=$?
930 cat <<EOF > genmake_tc_2.$FS
931 program hello
932 integer nbyte
933 call tfsize(nbyte)
934 print *," HELLO WORLD", nbyte
935 end
936 EOF
937 cat genmake_tc_2.$FS >> $LOGFILE
938 COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"
939 echo $COMM >> $LOGFILE
940 $COMM >> genmake_tc.log 2>&1
941 RETVAL=$?
942 if test "x$RETVAL" = x0 ; then
943 HAVE_STAT=t
944 DEFINES="$DEFINES -DHAVE_STAT"
945 fi
946 rm -f genmake_tc*
947 echo " --> set HAVE_STAT='$HAVE_STAT'" >> $LOGFILE
948 }
949
950 check_netcdf_libs() {
951 if test ! "x$SKIP_NETCDF_CHECK" = x ; then
952 return
953 fi
954 echo >> $LOGFILE
955 echo "running: check_netcdf_libs()" >> $LOGFILE
956 cat <<EOF > genmake_tnc.F
957 program fgennc
958 #include "netcdf.inc"
959 EOF
960 if test ! "x$MPI" = x ; then
961 echo '#include "mpif.h"' >> genmake_tnc.F
962 fi
963 cat <<EOF >> genmake_tnc.F
964 integer iret, ncid, xid
965 iret = nf_create('genmake_tnc.nc', NF_CLOBBER, ncid)
966 IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret)
967 iret = nf_def_dim(ncid, 'X', 11, xid)
968 IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret)
969 iret = nf_close(ncid)
970 IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret)
971 end
972 EOF
973 echo "=== genmake_tnc.F >>>" > genmake_tnc.log
974 cat genmake_tnc.F >> genmake_tnc.log
975 echo "<<< genmake_tnc.F ===" >> genmake_tnc.log
976 RET_CPP=f
977 COMM="cat genmake_tnc.F | $CPP $DEFINES $INCLUDES"
978 echo "$COMM" >> genmake_tnc.log
979 eval $COMM > genmake_tnc.$FS 2>/dev/null && RET_CPP=t
980 if test "x$RET_CPP" = xf ; then
981 echo " WARNING: CPP failed to pre-process the netcdf test." \
982 >> genmake_tnc.log
983 echo " Please check that \$INCLUDES is properly set." \
984 >> genmake_tnc.log
985 fi
986 echo "$FC $FFLAGS $FOPTIM -c genmake_tnc.$FS \ " >> genmake_tnc.log
987 echo " && $LINK $FFLAGS $FOPTIM -o genmake_tnc.o $LIBS" >> genmake_tnc.log
988 $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS >> genmake_tnc.log 2>&1 \
989 && $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS >> genmake_tnc.log 2>&1
990 RET_COMPILE=$?
991 cat genmake_tnc.log >> $LOGFILE
992
993 #EH3 Remove test program execution for machines that either disallow
994 #EH3 execution or cannot support it (eg. cross-compilers)
995 #EH3
996 #EH3 test -x ./genmake_tnc && ./genmake_tnc >> genmake_tnc.log 2>&1
997 #EH3 RETVAL=$?
998 #EH3 if test "x$RET_COMPILE" = x0 -a "x$RETVAL" = x0 ; then
999
1000 if test "x$RET_COMPILE" = x0 ; then
1001 HAVE_NETCDF=t
1002 echo "check_netcdf: successful" >> $LOGFILE
1003 else
1004 # try again with "-lnetcdf" added to the libs
1005 echo "==> try again with added '-lnetcdf'" > genmake_tnc.log
1006 echo "cat genmake_tnc.F | $CPP $DEFINES $INCLUDES > genmake_tnc.$FS \ " >> genmake_tnc.log
1007 echo " && $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS \ " >> genmake_tnc.log
1008 echo " && $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdf" >> genmake_tnc.log
1009 cat genmake_tnc.F | $CPP $DEFINES $INCLUDES > genmake_tnc.$FS 2>/dev/null \
1010 && $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS >> genmake_tnc.log 2>&1 \
1011 && $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdf >> genmake_tnc.log 2>&1
1012 RET_COMPILE=$?
1013 echo >> $LOGFILE
1014 cat genmake_tnc.log >> $LOGFILE
1015 if test "x$RET_COMPILE" = x0 ; then
1016 LIBS="$LIBS -lnetcdf"
1017 HAVE_NETCDF=t
1018 echo "check_netcdf: successful" >> $LOGFILE
1019 else
1020 # try again with "-lnetcdff" added to the libs
1021 echo "==> try again with added '-lnetcdff -lnetcdf'" > genmake_tnc.log
1022 echo "cat genmake_tnc.F | $CPP $DEFINES $INCLUDES > genmake_tnc.$FS \ " >> genmake_tnc.log
1023 echo " && $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS \ " >> genmake_tnc.log
1024 echo " && $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdf" >> genmake_tnc.log
1025 cat genmake_tnc.F | $CPP $DEFINES $INCLUDES > genmake_tnc.$FS 2>/dev/null \
1026 && $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS >> genmake_tnc.log 2>&1 \
1027 && $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdff -lnetcdf >> genmake_tnc.log 2>&1
1028 RET_COMPILE=$?
1029 echo >> $LOGFILE
1030 cat genmake_tnc.log >> $LOGFILE
1031 if test "x$RET_COMPILE" = x0 ; then
1032 LIBS="$LIBS -lnetcdff -lnetcdf"
1033 HAVE_NETCDF=t
1034 echo "check_netcdf: successful" >> $LOGFILE
1035 fi
1036 fi
1037 fi
1038 rm -f genmake_tnc*
1039 echo " --> set HAVE_NETCDF='$HAVE_NETCDF'" >> $LOGFILE
1040 }
1041
1042
1043 ###############################################################################
1044 # Sequential part of script starts here
1045 ###############################################################################
1046
1047 # Set defaults here
1048 COMMANDL="$0 $@"
1049
1050 PLATFORM=
1051 LN=
1052 S64=
1053 KPP=
1054 #FC=
1055 #CC=gcc
1056 #CPP=
1057 LINK=
1058 DEFINES=
1059 PACKAGES=
1060 ENABLE=
1061 DISABLE=
1062 # MAKEFILE=
1063 # MAKEDEPEND=
1064 PKG_DEPEND=
1065 PKG_GROUPS=
1066 DUMPSTATE=f
1067 OPTFILE=
1068 INCLUDES="-I. $INCLUDES"
1069 FFLAGS=
1070 FOPTIM=
1071 FEXTRAFLAGS=
1072 USE_EXTENDED_SRC=
1073 EXTENDED_SRC_FLAG=
1074 GET_FC_VERSION=
1075 CFLAGS=
1076 KFLAGS1=
1077 KFLAGS2=
1078 #LDADD=
1079 LIBS=
1080 KPPFILES=
1081 NOOPTFILES=
1082 NOOPTFLAGS=
1083 MPI=
1084 MPIPATH=
1085 OMP=
1086 OMPFLAG=
1087 USE_R4=
1088 TS=
1089 PAPIS=
1090 PCLS=
1091 FOOLAD=
1092 PAPI=
1093 PCL=
1094 HPMT=
1095 GSL=
1096 DEVEL=
1097 HAVE_TEST_L=
1098
1099 # DEFINES checked by test compilation or command-line
1100 HAVE_SYSTEM=
1101 HAVE_FDATE=
1102 FC_NAMEMANGLE=
1103 HAVE_CLOC=
1104 # HAVE_SETRLSTK=
1105 HAVE_STAT=
1106 HAVE_NETCDF=
1107 HAVE_ETIME=
1108 IGNORE_TIME=
1109
1110 MODS=
1111 TOOLSDIR=
1112 SOURCEDIRS=
1113 INCLUDEDIRS=
1114 STANDARDDIRS="USE_THE_DEFAULT"
1115
1116 G2ARGS=
1117 BASH=
1118 PWD=`pwd`
1119 test "x$MAKE" = x && MAKE=make
1120 test "x$AWK" = x && AWK=awk
1121 EMBED_SRC=
1122 THISHOST=`hostname`
1123 THISCWD=`pwd`
1124 THISDATE=`date`
1125 THISUSER=`echo $USER`
1126 THISVER=
1127 MACHINE=`uname -a`
1128 EXECUTABLE=
1129 EXEHOOK=
1130 EXEDIR=
1131 IEEE=
1132 if test "x$MITGCM_IEEE" != x ; then
1133 IEEE=$MITGCM_IEEE
1134 fi
1135 FS=
1136 FS90=
1137
1138 AUTODIFF_PKG_USED=f
1139 AD_OPTFILE=
1140 TAF=
1141 AD_TAF_FLAGS=
1142 FTL_TAF_FLAGS=
1143 SVD_TAF_FLAGS=
1144 TAF_EXTRA=
1145 TAMC=
1146 AD_TAMC_FLAGS=
1147 FTL_TAF_FLAGS=
1148 SVD_TAMC_FLAGS=
1149 TAMC_EXTRA=
1150
1151 # The following state can be set directly by command-line switches
1152 gm_s1="OPTFILE PKG_DEPEND PKG_GROUPS DISABLE ENABLE MAKEFILE MAKEDEPEND PLATFORM"
1153 gm_s2="FC CC MPI OMP USE_R4 TS PAPIS PCLS PAPI PCL HPMT IEEE DEVEL GSL FEXTRAFLAGS"
1154 gm_s3="ROOTDIR STANDARDDIRS MODS DUMPSTATE"
1155
1156 # The following state is not directly set by command-line switches
1157 gm_s4="LN S64 LINK MAKE PACKAGES INCLUDES FFLAGS FOPTIM"
1158 gm_s5="CFLAGS LIBS KPP KFLAGS1 KFLAGS2 KPPFILES NOOPTFILES NOOPTFLAGS"
1159 gm_s6="TOOLSDIR SOURCEDIRS INCLUDEDIRS EXEDIR EXECUTABLE EXEHOOK"
1160 gm_s7="PWD THISHOST THISUSER THISDATE THISVER MACHINE"
1161 gm_s8="FC_NAMEMANGLE HAVE_NETCDF HAVE_SYSTEM HAVE_FDATE HAVE_ETIME"
1162
1163 # The following are all related to adjoint/tangent-linear stuff
1164 gm_s10="AUTODIFF_PKG_USED AD_OPTFILE TAMC TAF AD_TAMC_FLAGS AD_TAF_FLAGS"
1165 gm_s11="FTL_TAMC_FLAGS FTL_TAF_FLAGS SVD_TAMC_FLAGS SVD_TAF_FLAGS"
1166 gm_s12="TAF_EXTRA TAMC_EXTRA"
1167
1168 gm_state="COMMANDL $gm_s1 $gm_s2 $gm_s3 $gm_s4 $gm_s5 $gm_s6 $gm_s7 $gm_s8"
1169 gm_state="$gm_state $gm_s10 $gm_s11 $gm_s12"
1170
1171 cat <<EOF
1172
1173 GENMAKE :
1174
1175 A program for GENerating MAKEfiles for the MITgcm project.
1176 For a quick list of options, use "genmake2 -h"
1177 or for more detail see the Developer's HOWTO manual at:
1178 http://mitgcm.org/public/docs.html
1179
1180 EOF
1181
1182 LOGFILE="genmake.log"
1183 #- clean-up previous genmake logfiles:
1184 rm -f genmake_state genmake_*optfile $LOGFILE
1185
1186 echo "=== Processing options files and arguments ==="
1187 gm_local="genmake_local"
1188 printf " getting local config information: "
1189 if test -f $gm_local ; then
1190 echo "using $gm_local"
1191 . $gm_local
1192 # echo "DISABLE=$DISABLE"
1193 # echo "ENABLE=$ENABLE"
1194 else
1195 echo "none found"
1196 fi
1197
1198 #echo "$0::$1:$2:$3:$4:$5:$6:$7:"
1199 #parse_options
1200 ac_prev=
1201 for ac_option in "$@" ; do
1202
1203 G2ARGS="$G2ARGS \"$ac_option\""
1204
1205 # If the previous option needs an argument, assign it.
1206 if test -n "$ac_prev"; then
1207 eval "$ac_prev=\$ac_option"
1208 ac_prev=
1209 continue
1210 fi
1211
1212 ac_optarg=`expr "x$ac_option" : 'x[^=]*=\(.*\)'`
1213
1214 case $ac_option in
1215
1216 -help | --help | -h | --h)
1217 usage ;;
1218
1219 -nooptfile | --nooptfile)
1220 OPTFILE="NONE" ;;
1221 -optfile | --optfile | -of | --of)
1222 ac_prev=OPTFILE ;;
1223 -optfile=* | --optfile=* | -of=* | --of=*)
1224 OPTFILE=$ac_optarg ;;
1225
1226 -adoptfile | --adoptfile | -adof | --adof)
1227 ac_prev=AD_OPTFILE ;;
1228 -adoptfile=* | --adoptfile=* | -adof=* | --adof=*)
1229 AD_OPTFILE=$ac_optarg ;;
1230
1231 -pdepend | --pdepend)
1232 ac_prev=PKG_DEPEND ;;
1233 -pdepend=* | --pdepend=*)
1234 PKG_DEPEND=$ac_optarg ;;
1235
1236 -pgroups | --pgroups)
1237 ac_prev=PKG_GROUPS ;;
1238 -pgroups=* | --pgroups=*)
1239 PKG_GROUPS=$ac_optarg ;;
1240
1241 -make | --make | -m | --m)
1242 ac_prev=MAKE ;;
1243 -make=* | --make=* | -m=* | --m=*)
1244 MAKE=$ac_optarg ;;
1245
1246 -bash | --bash)
1247 ac_prev=BASH ;;
1248 -bash=* | --bash=*)
1249 BASH=$ac_optarg ;;
1250
1251 -makedepend | --makedepend | -md | --md)
1252 ac_prev=MAKEDEPEND ;;
1253 -makedepend=* | --makedepend=* | -md=* | --md=*)
1254 MAKEDEPEND=$ac_optarg ;;
1255
1256 -makefile | --makefile | -ma | --ma)
1257 ac_prev=MAKEFILE ;;
1258 -makefile=* | --makefile=* | -ma=* | --ma=*)
1259 MAKEFILE=$ac_optarg ;;
1260
1261 -platform | --platform | -pl | --pl | -platform=* | --platform=* | -pl=* | --pl=*)
1262 echo "ERROR: The platform option has been removed. Please specify"
1263 echo " the build options using the \"optfile\" mechanism."
1264 echo
1265 usage
1266 ;;
1267
1268 -rootdir | --rootdir | -rd | --rd)
1269 ac_prev=ROOTDIR ;;
1270 -rootdir=* | --rootdir=* | -rd=* | --rd=*)
1271 ROOTDIR=$ac_optarg ;;
1272
1273 -mods | --mods | -mo | --mo)
1274 ac_prev=MODS ;;
1275 -mods=* | --mods=* | -mo=* | --mo=*)
1276 MODS=$ac_optarg ;;
1277
1278 -disable | --disable)
1279 ac_prev=DISABLE ;;
1280 -disable=* | --disable=*)
1281 DISABLE=$ac_optarg ;;
1282
1283 -enable | --enable)
1284 ac_prev=ENABLE ;;
1285 -enable=* | --enable=*)
1286 ENABLE=$ac_optarg ;;
1287
1288 -standarddirs | --standarddirs)
1289 ac_prev=STANDARDDIRS ;;
1290 -standarddirs=* | --standarddirs=*)
1291 STANDARDDIRS=$ac_optarg ;;
1292
1293 # -cpp | --cpp)
1294 # ac_prev=cpp ;;
1295 # -cpp=* | --cpp=*)
1296 # CPP=$ac_optarg ;;
1297
1298 -cc | --cc)
1299 ac_prev=CC ;;
1300 -cc=* | --cc=*)
1301 CC=$ac_optarg ;;
1302
1303 -fortran | --fortran | -fc | --fc)
1304 ac_prev=FC ;;
1305 -fc=* | --fc=*)
1306 FC=$ac_optarg ;;
1307
1308 -fs | --fs)
1309 ac_prev=FS ;;
1310 -fs=* | --fs=*)
1311 FS=$ac_optarg ;;
1312
1313 -fs90 | --fs90)
1314 ac_prev=FS90 ;;
1315 -fs90=* | --fs90=*)
1316 FS90=$ac_optarg ;;
1317
1318 -use_real4 | -use_r4 | -ur4 | --use_real4 | --use_r4 | --ur4 )
1319 USE_R4=true ;;
1320
1321 -ieee | --ieee)
1322 IEEE=true ;;
1323 -noieee | --noieee)
1324 echo "Warning: ignore option '$ac_option' (default is already without '-ieee')" ;;
1325 -devel | --devel)
1326 IEEE=true ; DEVEL=true ;;
1327 -gsl | --gsl)
1328 GSL=true ;;
1329
1330 -ts | --ts)
1331 TS=true ;;
1332 -papis | --papis)
1333 PAPIS=true ;;
1334 -pcls | --pcls)
1335 PCLS=true ;;
1336 -foolad | --foolad)
1337 FOOLAD=true ;;
1338 -papi | --papi)
1339 PAPI=true ;;
1340 -pcl | --pcl)
1341 PCL=true ;;
1342 -hpmt | --hpmt)
1343 HPMT=true ;;
1344
1345 -mpi | --mpi)
1346 MPI=true ;;
1347 -mpi=* | --mpi=*)
1348 MPIPATH=$ac_optarg
1349 MPI=true ;;
1350
1351 -omp | --omp)
1352 OMP=true ;;
1353 -omp=* | --omp=*)
1354 OMPFLAG=$ac_optarg
1355 OMP=true ;;
1356
1357 -ds | --ds)
1358 DUMPSTATE=t ;;
1359
1360 -extra_flag | --extra_flag)
1361 ac_prev=FEXTRAFLAGS ;;
1362 -extra_flag=* | --extra_flag=*)
1363 FEXTRAFLAGS=$ac_optarg ;;
1364
1365 -taf_extra | --taf_extra)
1366 ac_prev=TAF_EXTRA ;;
1367 -taf_extra=* | --taf_extra=*)
1368 TAF_EXTRA=$ac_optarg ;;
1369
1370 -tamc_extra | --tamc_extra)
1371 ac_prev=TAMC_EXTRA ;;
1372 -tamc_extra=* | --tamc_extra=*)
1373 TAMC_EXTRA=$ac_optarg ;;
1374
1375 -ignoretime | -ignore_time | --ignoretime | --ignore_time)
1376 IGNORE_TIME="-DIGNORE_TIME" ;;
1377
1378 -es | --es | -embed-source | --embed-source)
1379 EMBED_SRC=t ;;
1380
1381 -*)
1382 echo "Error: unrecognized option: "$ac_option
1383 usage
1384 ;;
1385
1386 *)
1387 echo "Error: unrecognized argument: "$ac_option
1388 usage
1389 ;;
1390
1391 esac
1392
1393 done
1394
1395 if test -f ./.genmakerc ; then
1396 echo
1397 echo "WARNING: genmake2 has detected a copy of the old-style \"./.genmakerc\""
1398 echo " file. This file format is no longer supported. For directions on"
1399 echo " how to setup and use the new \"genmake2\" script, please see:"
1400 echo " http://mitgcm.org/public/devel_HOWTO/"
1401 echo " and send an email to MITgcm-support@mitgcm.org if you need help."
1402 echo "WARNING: ignore \"./.genmakerc\" and continue."
1403 echo
1404 fi
1405
1406 # Find the MITgcm ${ROOTDIR}
1407 if test "x${ROOTDIR}" = x ; then
1408 tmp=`echo $PWD | sed -e 's/\// /g' | $AWK '{print $NR}'`
1409 if test "x$tmp" = "xbin" -a -d ../model -a -d ../eesupp -a -d ../pkg ; then
1410 ROOTDIR=".."
1411 else
1412 for d in . .. ../.. ../../.. ../../../.. ../../../../.. ; do
1413 if [ -d "$d/model" -a -d "$d/eesupp" -a -d "$d/pkg" ]; then
1414 ROOTDIR=$d
1415 printf "Warning: ROOTDIR was not specified ;"
1416 echo " try using a local copy of MITgcm found at \"$ROOTDIR\""
1417 break
1418 fi
1419 done
1420 fi
1421 fi
1422 if test "x${ROOTDIR}" = x ; then
1423 echo "Error: Cannot determine ROOTDIR for MITgcm code."
1424 echo " Please specify a ROOTDIR using either an options "
1425 echo " file or a command-line option."
1426 exit 1
1427 fi
1428 if test ! -d ${ROOTDIR} ; then
1429 echo "Error: the specified ROOTDIR (\"$ROOTDIR\") does not exist!"
1430 exit 1
1431 fi
1432
1433 # Find the MITgcm ${THISVER}
1434 version_file="${ROOTDIR}/doc/tag-index"
1435 if test -f $version_file ; then
1436 THISVER=`$AWK '/^checkpoint/{print $1; exit}' $version_file`
1437 #- remove ./BUILD_INFO.h file if older than version_file
1438 if test -f ./BUILD_INFO.h -a ./BUILD_INFO.h -ot $version_file ; then
1439 echo " remove ./BUILD_INFO.h (older than ${version_file})"
1440 rm -f ./BUILD_INFO.h
1441 fi
1442 fi
1443
1444 if test "x$MAKEFILE" = x ; then
1445 MAKEFILE="Makefile"
1446 fi
1447
1448 echo " getting OPTFILE information:"
1449 if test "x${OPTFILE}" = x ; then
1450 if test "x$MITGCM_OF" = x ; then
1451 echo "Warning: no OPTFILE specified so we'll look for possible settings"
1452 printf "\n=== Searching for possible settings for OPTFILE ===\n"
1453 find_possible_optfile
1454 else
1455 OPTFILE=$MITGCM_OF
1456 fi
1457 fi
1458 if test "x$OPTFILE" != xNONE ; then
1459 if test -f "$OPTFILE" -a -r "$OPTFILE" ; then
1460 echo " using OPTFILE=\"$OPTFILE\""
1461 . "$OPTFILE"
1462 RETVAL=$?
1463 if test "x$RETVAL" != x0 ; then
1464 printf "Error: failed to source OPTFILE \"$OPTFILE\""
1465 echo "--please check that variable syntax is bash-compatible"
1466 exit 1
1467 fi
1468 if test "x$DUMPSTATE" = xt ; then
1469 cp -f $OPTFILE "genmake_optfile"
1470 fi
1471 else
1472 echo "Error: can't read OPTFILE=\"$OPTFILE\""
1473 exit 1
1474 fi
1475 fi
1476
1477 echo " getting AD_OPTFILE information:"
1478 if test "x${AD_OPTFILE}" = x ; then
1479 if test "x$MITGCM_AD_OF" = x ; then
1480 AD_OPTFILE=$ROOTDIR/tools/adjoint_options/adjoint_default
1481 else
1482 AD_OPTFILE=$MITGCM_AD_OF
1483 fi
1484 fi
1485 if test "x${AD_OPTFILE}" != xNONE ; then
1486 if test -f "$AD_OPTFILE" -a -r "$AD_OPTFILE" ; then
1487 echo " using AD_OPTFILE=\"$AD_OPTFILE\""
1488 . "$AD_OPTFILE"
1489 RETVAL=$?
1490 if test "x$RETVAL" != x0 ; then
1491 printf "Error: failed to source AD_OPTFILE \"$AD_OPTFILE\""
1492 echo "--please check that variable syntax is bash-compatible"
1493 exit 1
1494 fi
1495 if test "x$DUMPSTATE" = xt ; then
1496 cp -f $AD_OPTFILE "genmake_ad_optfile"
1497 fi
1498 else
1499 echo "Error: can't read AD_OPTFILE=\"$AD_OPTFILE\""
1500 exit 1
1501 fi
1502 fi
1503
1504 #====================================================================
1505 # Set default values if not set by the optfile
1506 #
1507 # Check that FC, CC, LINK, CPP, S64, LN, and MAKE are defined. If not,
1508 # either set defaults or complain and abort!
1509 if test ! "x$BASH" = x ; then
1510 # add a trailing space so that it works within the Makefile syntax (see below)
1511 BASH="$BASH "
1512 fi
1513 if test "x$FC" = x ; then
1514 cat <<EOF 1>&2
1515
1516 Error: no Fortran compiler: please specify using one of the following:
1517 1) within the options file ("FC=...") as specified by "-of=OPTFILE"
1518 2) the "-fc=XXX" command-line option
1519 3) the "./genmake_local" file
1520 EOF
1521 exit 1
1522 fi
1523 if test "x$GET_FC_VERSION" != x ; then
1524 echo "Get compiler version using: $FC $GET_FC_VERSION" >> $LOGFILE
1525 ff=`echo $FC | sed 's/ .*//'` ; xx=`echo $ff | sed 's/^./& /' | sed 's/ .*//'`
1526 if test $xx != '/' ; then which $ff >> $LOGFILE ; fi
1527 $FC $GET_FC_VERSION > genmake_fc_vers1 2> genmake_fc_vers2
1528 if test -s genmake_fc_vers1 ; then
1529 cat genmake_fc_vers1 >> $LOGFILE
1530 else
1531 cat genmake_fc_vers2 >> $LOGFILE
1532 fi
1533 echo "<-- compiler version ----" >> $LOGFILE
1534 rm -f genmake_fc_vers1 genmake_fc_vers2
1535 fi
1536
1537 if test "x$CC" = x ; then
1538 look_for_C_compilers
1539 fi
1540
1541 if test "x$LINK" = x ; then
1542 LINK=$FC
1543 fi
1544 if test "x$MAKE" = x ; then
1545 MAKE="make"
1546 fi
1547 if test "x$CPP" = x ; then
1548 CPP="cpp -traditional -P"
1549 fi
1550 #EH3 === UGLY ===
1551 # The following is an ugly little hack to check for $CPP in /lib/ and
1552 # it should eventually be replaced with a more general function that
1553 # searches a combo of the user's path and a list of "usual suspects"
1554 # to find the correct location for binaries such as $CPP.
1555 for i in " " "/lib/" ; do
1556 echo "#define A a" | $i$CPP > test_cpp 2>&1 && CPP=$i$CPP
1557 done
1558 #EH3 === UGLY ===
1559 echo "#define A a" | $CPP > test_cpp 2>&1
1560 RETVAL=$?
1561 if test "x$RETVAL" != x0 ; then
1562 cat <<EOF 1>&2
1563
1564 Error: C pre-processor "$CPP" failed the test case: please specify using:
1565
1566 1) within the options file ("CPP=...") as specified by "-of=OPTFILE"
1567 2) the "./genmake_local" file
1568 3) with the CPP environment variable
1569
1570 EOF
1571 exit 1
1572 else
1573 rm -f test_cpp
1574 fi
1575
1576 look_for_makedepend
1577
1578 # Check that soft-link command is set and usable
1579 if test "x$LN" = x ; then
1580 LN="ln -s"
1581 fi
1582 echo "test" > genmake_test_ln
1583 $LN genmake_test_ln genmake_tlink
1584 RETVAL=$?
1585 if test "x$RETVAL" != x0 ; then
1586 cat <<EOF 1>&2
1587
1588 Error: The command "$LN" failed -- please specify a working soft-link
1589 command in the optfile.
1590
1591 EOF
1592 exit 1
1593 fi
1594 test -L genmake_tlink > /dev/null 2>&1
1595 RETVAL=$?
1596 if test "x$RETVAL" = x0 ; then
1597 HAVE_TEST_L=t
1598 fi
1599 rm -f genmake_test_ln genmake_tlink
1600
1601 # Check for broken *.F/*.f handling and fix if possible
1602 check_for_broken_Ff
1603
1604 if test ! "x$MPI" = x ; then
1605 echo " Turning on MPI cpp macros"
1606 DEFINES="$DEFINES -DALLOW_USE_MPI -DALWAYS_USE_MPI"
1607 fi
1608 if test ! "x$OMP" = x ; then
1609 echo " Add OMPFLAG and turn on OpenMP cpp macros"
1610 FFLAGS="$FFLAGS $OMPFLAG"
1611 F90FLAGS="$F90FLAGS $OMPFLAG"
1612 DEFINES="$DEFINES -DUSE_OMP_THREADING"
1613 fi
1614
1615 if test ! "x$USE_R4" = x ; then
1616 echo " Turning on LET_RS_BE_REAL4 cpp flag"
1617 DEFINES="$DEFINES -DLET_RS_BE_REAL4"
1618 fi
1619
1620 if test ! "x$TS" = x ; then
1621 echo " Turning on timing per timestep"
1622 if test ! "x$FOOLAD" = x ; then
1623 DEFINES="$DEFINES -DTIME_PER_TIMESTEP_SFP"
1624 else
1625 DEFINES="$DEFINES -DTIME_PER_TIMESTEP"
1626 fi
1627 PACKAGES="$PACKAGES showflops"
1628 fi
1629 if test ! "x$PAPIS" = x ; then
1630 echo " Turning on PAPI flop summary per timestep"
1631 echo " Please make sure PAPIINC, PAPILIB are defined"
1632 if test ! "x$FOOLAD" = x ; then
1633 DEFINES="$DEFINES -DUSE_PAPI_FLOPS_SFP"
1634 else
1635 DEFINES="$DEFINES -DUSE_PAPI_FLOPS"
1636 fi
1637 INCLUDES="$INCLUDES $PAPIINC"
1638 LIBS="$LIBS $PAPILIB"
1639 PACKAGES="$PACKAGES showflops"
1640 fi
1641 if test ! "x$PCLS" = x ; then
1642 echo " Turning on PCL counter summary per timestep"
1643 echo " Please make sure PCLINC, PCLLIB are defined"
1644 if test ! "x$FOOLAD" = x ; then
1645 DEFINES="$DEFINES -DUSE_PCL_FLOPS_SFP"
1646 else
1647 DEFINES="$DEFINES -DUSE_PCL_FLOPS"
1648 fi
1649 INCLUDES="$INCLUDES $PCLINC"
1650 LIBS="$LIBS $PCLLIB"
1651 PACKAGES="$PACKAGES showflops"
1652 fi
1653 if test ! "x$PAPI" = x ; then
1654 if test ! "x$PAPIS" = x ; then
1655 echo " PAPI performance analysis and flop summary per timestep cannot co-exist!"
1656 echo " Sticking with PAPI flop summary per timestep!"
1657 else
1658 echo " Turning on performance analysis with PAPI"
1659 echo " Please make sure PAPIINC, PAPILIB are defined"
1660 DEFINES="$DEFINES -DUSE_PAPI"
1661 INCLUDES="$INCLUDES $PAPIINC"
1662 LIBS="$LIBS $PAPILIB"
1663 fi
1664 fi
1665 if test ! "x$PCL" = x ; then
1666 if test ! "x$PCLS" = x ; then
1667 echo " PCL performance analysis and flop summary per timestep cannot co-exist!"
1668 echo " Sticking with PCL flop summary per timestep!"
1669 else
1670 echo " Turning on performance analysis with PCL"
1671 echo " Please make sure PCLINC, PCLLIB are defined"
1672 DEFINES="$DEFINES -DUSE_PCL"
1673 INCLUDES="$INCLUDES $PCLINC"
1674 LIBS="$LIBS $PCLLIB"
1675 fi
1676 fi
1677 if test ! "x$HPMT" = x ; then
1678 if test ! "x$PAPI" = x ; then
1679 echo " PAPI and the HPM Toolkit cannot co-exist!"
1680 echo " Sticking with PAPI!"
1681 else if test ! "x$PCL" = x ; then
1682 echo " PCL and the HPM Toolkit cannot co-exist!"
1683 echo " Sticking with PCL!"
1684 else
1685 echo " Turning on performance analysis with the HPM Toolkit"
1686 echo " Please make sure HPMTINC, HPMTLIB are defined"
1687 DEFINES="$DEFINES -DUSE_LIBHPM"
1688 INCLUDES="$INCLUDES $HPMTINC"
1689 LIBS="$LIBS $HPMTLIB"
1690 fi
1691 fi
1692 fi
1693 if test ! "x$GSL" = x ; then
1694 echo " Turning on use of GSL to control floating point calculations"
1695 echo " Please make sure GSLINC, GSLLIB are defined"
1696 DEFINES="$DEFINES -DUSE_GSL_IEEE"
1697 INCLUDES="$INCLUDES $GSLINC"
1698 LIBS="$LIBS $GSLLIB"
1699 fi
1700 #- if USE_EXTENDED_SRC is set, add EXTENDED_SRC_FLAG to FFLAGS :
1701 if test ! "x$USE_EXTENDED_SRC" = x ; then
1702 FFLAGS="$FFLAGS $EXTENDED_SRC_FLAG"
1703 F90FIXEDFORMAT="$F90FIXEDFORMAT $EXTENDED_SRC_FLAG"
1704 fi
1705
1706 printf "\n=== Checking system libraries ===\n"
1707 printf " Do we have the system() command using $FC... "
1708 cat > genmake_tcomp.$FS <<EOF
1709 program hello
1710 call system('echo hi')
1711 end
1712 EOF
1713 $FC $FFLAGS -o genmake_tcomp genmake_tcomp.$FS > genmake_tcomp.log 2>&1
1714 RETVAL=$?
1715 if test "x$RETVAL" = x0 ; then
1716 HAVE_SYSTEM=t
1717 DEFINES="$DEFINES -DHAVE_SYSTEM"
1718 echo "yes"
1719 else
1720 HAVE_SYSTEM=
1721 echo "no"
1722 fi
1723 rm -f genmake_tcomp*
1724
1725 printf " Do we have the fdate() command using $FC... "
1726 cat > genmake_tcomp.$FS <<EOF
1727 program hello
1728 CHARACTER*(128) string
1729 string = ' '
1730 call fdate( string )
1731 print *, string
1732 end
1733 EOF
1734 $FC $FFLAGS -o genmake_tcomp genmake_tcomp.$FS > genmake_tcomp.log 2>&1
1735 RETVAL=$?
1736 if test "x$RETVAL" = x0 ; then
1737 HAVE_FDATE=t
1738 DEFINES="$DEFINES -DHAVE_FDATE"
1739 echo "yes"
1740 else
1741 HAVE_FDATE=
1742 echo "no"
1743 fi
1744 rm -f genmake_tcomp*
1745
1746 printf " Do we have the etime() command using $FC... "
1747 cat > genmake_tcomp.$FS <<EOF
1748 program hello
1749 REAL*4 ACTUAL, TARRAY(2)
1750 EXTERNAL ETIME
1751 REAL*4 ETIME
1752 actual = etime( tarray )
1753 print *, tarray
1754 end
1755 EOF
1756 $FC $FFLAGS -o genmake_tcomp genmake_tcomp.$FS > genmake_tcomp.log 2>&1
1757 RETVAL=$?
1758 if test "x$RETVAL" = x0 ; then
1759 HAVE_ETIME=t
1760 DEFINES="$DEFINES -DHAVE_ETIME"
1761 echo "yes"
1762 else
1763 HAVE_ETIME=
1764 echo "no"
1765 fi
1766 rm -f genmake_tcomp*
1767
1768 printf " Can we call simple C routines (here, \"cloc()\") using $FC... "
1769 check_HAVE_CLOC
1770 if test "x$HAVE_CLOC" != x ; then
1771 echo "yes"
1772 else
1773 echo "no"
1774 if test "x$EMBED_SRC" = xt ; then
1775 echo " WARNING: you requested file embedding but it has"
1776 echo " been disabled since C code cannot be called"
1777 EMBED_SRC=
1778 fi
1779 fi
1780 rm -f genmake_t*
1781
1782 printf " Can we unlimit the stack size using $FC... "
1783 check_HAVE_SETRLSTK
1784 if test "x$HAVE_SETRLSTK" = xt ; then
1785 echo "yes"
1786 else
1787 echo "no"
1788 fi
1789 rm -f genmake_t*
1790
1791 printf " Can we register a signal handler using $FC... "
1792 check_HAVE_SIGREG
1793 if test "x$HAVE_SIGREG" = xt ; then
1794 echo "yes"
1795 else
1796 echo "no"
1797 fi
1798 rm -f genmake_t*
1799
1800 printf " Can we use stat() through C calls... "
1801 check_HAVE_STAT
1802 if test "x$HAVE_STAT" != x ; then
1803 echo "yes"
1804 else
1805 echo "no"
1806 fi
1807 rm -f genmake_t*
1808
1809 printf " Can we create NetCDF-enabled binaries... "
1810 check_netcdf_libs
1811 if test "x$HAVE_NETCDF" != x ; then
1812 echo "yes"
1813 else
1814 echo "no"
1815 fi
1816 DEFINES="$DEFINES $IGNORE_TIME"
1817
1818 if test "x$EMBED_SRC" = xt ; then
1819 build_embed_encode
1820 fi
1821 if test "x$EMBED_SRC" = xt ; then
1822 ENABLE="$ENABLE embed_files"
1823 fi
1824
1825 printf "\n=== Setting defaults ===\n"
1826 printf " Adding MODS directories: "
1827 for d in $MODS ; do
1828 if test ! -d $d ; then
1829 echo
1830 echo "Error: MODS directory \"$d\" not found!"
1831 exit 1
1832 else
1833 printf "$d "
1834 SOURCEDIRS="$SOURCEDIRS $d"
1835 INCLUDEDIRS="$INCLUDEDIRS $d"
1836 fi
1837 done
1838 echo
1839
1840 #if test "x${PLATFORM}" = x ; then
1841 # PLATFORM=$p_PLATFORM
1842 #fi
1843
1844 if test "x${EXEDIR}" = x ; then
1845 tmp=`echo $PWD | sed -e 's/\// /g' | $AWK '{print $NR}'`
1846 if test "x$tmp" = "xbin" -a -d ../exe -a $ROOTDIR = .. ; then
1847 EXEDIR=../exe
1848 else
1849 EXEDIR=.
1850 fi
1851 fi
1852 if test ! -d ${EXEDIR} ; then
1853 echo "Error: the specified EXEDIR (\"$EXEDIR\") does not exist!"
1854 exit 1
1855 fi
1856
1857 if test "x${TOOLSDIR}" = x ; then
1858 TOOLSDIR="$ROOTDIR/tools"
1859 fi
1860 if test ! -d ${TOOLSDIR} ; then
1861 echo "Error: the specified TOOLSDIR (\"$TOOLSDIR\") does not exist!"
1862 exit 1
1863 fi
1864 if test "x$S64" = x ; then
1865 echo "3.0 _d 3" | ${TOOLSDIR}/set64bitConst.sh > /dev/null 2>&1
1866 RETVAL=$?
1867 if test "x${RETVAL}" = x0 ; then
1868 S64='$(TOOLSDIR)/set64bitConst.sh'
1869 else
1870 echo "3.0 _d 3" | ${TOOLSDIR}/set64bitConst.csh > /dev/null 2>&1
1871 RETVAL=$?
1872 if test "x${RETVAL}" = x0 ; then
1873 S64='$(TOOLSDIR)/set64bitConst.csh'
1874 else
1875 cat <<EOF
1876
1877 ERROR: neither of the two default scripts:
1878
1879 ${TOOLSDIR}/set64bitConst.sh
1880 ${TOOLSDIR}/set64bitConst.csh
1881
1882 are working so please check paths or specify (with \$S64) a
1883 working version of this script.
1884
1885 EOF
1886 exit 1
1887 fi
1888 fi
1889 fi
1890 THIS_SCRIPT=`echo ${0} | sed 's:'$TOOLSDIR':\$(TOOLSDIR):'`
1891
1892 EXECUTABLE=${EXECUTABLE:-mitgcmuv}
1893
1894 # Set Standard Code Directories:
1895 if test "x$STANDARDDIRS" = xUSE_THE_DEFAULT ; then
1896 STANDARDDIRS="eesupp model"
1897 fi
1898 # if model in Standard-Code-Dir, add eesupp (needed to compile model)
1899 echo " $STANDARDDIRS " | grep ' model ' > /dev/null 2>&1
1900 ckM=$?
1901 echo " $STANDARDDIRS " | grep ' eesupp ' > /dev/null 2>&1
1902 ckE=$?
1903 if test $ckM = 0 -a $ckE = 1 ; then
1904 STANDARDDIRS="$STANDARDDIRS eesupp"
1905 fi
1906
1907 # We have a special set of source files in eesupp/src which are
1908 # generated from some template source files. We'll make them first so
1909 # they appear as regular source code
1910 if test -r $ROOTDIR"/eesupp/src/Makefile" ; then
1911 echo " Making source files in eesupp from templates"
1912 ( cd $ROOTDIR"/eesupp/src/" && $MAKE clean_old && $MAKE \
1913 ) > make_eesupp.errors 2>&1
1914 RETVAL=$?
1915 if test "x${RETVAL}" = x0 ; then
1916 rm -f make_eesupp.errors
1917 else
1918 echo "Error: problem encountered while building source files in eesupp:"
1919 cat make_eesupp.errors 1>&2
1920 exit 1
1921 fi
1922 fi
1923
1924 #same for pkg/exch2 and pkg/regrid
1925 for pdir in exch2 regrid ; do
1926 if test -r $ROOTDIR"/pkg/${pdir}/Makefile" ; then
1927 echo " Making source files in pkg/${pdir} from templates"
1928 ( cd $ROOTDIR"/pkg/"${pdir} && $MAKE clean_old && $MAKE \
1929 ) > make_${pdir}.errors 2>&1
1930 RETVAL=$?
1931 if test "x${RETVAL}" = x0 ; then
1932 rm -f make_${pdir}.errors
1933 else
1934 echo "Error: problem encountered while building source files in pkg/${pdir}:"
1935 cat make_${pdir}.errors 1>&2
1936 exit 1
1937 fi
1938 fi
1939 done
1940
1941 printf "\n=== Determining package settings ===\n"
1942 if test "x${PKG_DEPEND}" = x ; then
1943 tmp=$ROOTDIR"/pkg/pkg_depend"
1944 if test -r $tmp ; then PKG_DEPEND=$tmp ; fi
1945 fi
1946 if test "x${PKG_DEPEND}" = x ; then
1947 echo "Warning: No package dependency information was specified."
1948 echo " Please check that ROOTDIR/pkg/pkg_depend exists."
1949 else
1950 if test ! -r ${PKG_DEPEND} ; then
1951 echo "Error: can't read package dependency info from PKG_DEPEND=\"$PKG_DEPEND\""
1952 exit 1
1953 fi
1954 echo " getting package dependency info from $PKG_DEPEND"
1955 # Strip the comments and then convert the dependency file into arrays: PNAME, DNAME
1956 get_pdepend_list $PKG_DEPEND
1957 fi
1958
1959 # A default package groups file "$ROOTDIR/pkg/pkg_groups" is provided
1960 # to define the "default_pkg_list" and package groups (for convenience, one
1961 # can specify a group of packages using names like "ocean" and "atmosphere").
1962 if test "x${PKG_GROUPS}" = x ; then
1963 tmp=$ROOTDIR"/pkg/pkg_groups"
1964 if test -r $tmp ; then PKG_GROUPS=$tmp ; fi
1965 fi
1966 if test "x${PKG_GROUPS}" = x ; then
1967 echo "Warning: No package groups information was specified."
1968 echo " Please check that ROOTDIR/pkg/pkg_groups exists."
1969 else
1970 if test ! -r ${PKG_GROUPS} ; then
1971 echo "Error: can't read package groups info from PKG_GROUPS=\"$PKG_GROUPS\""
1972 exit 1
1973 fi
1974 echo " getting package groups info from $PKG_GROUPS"
1975 fi
1976
1977 # Search for packages to compile.
1978 echo " checking list of packages to compile:"
1979 PKG_LIST=
1980 if test "x${PKG_LIST}" = x ; then
1981 for i in "." $MODS ; do
1982 if test -r $i"/packages.conf" ; then
1983 PKG_LIST=$i"/packages.conf"
1984 break
1985 fi
1986 done
1987 fi
1988 if test "x${PKG_LIST}" = x ; then
1989 pkg_list='default_pkg_list'
1990 if test "x${PKG_GROUPS}" = x ; then
1991 echo "Error: need package groups info to expand pkg_list=\"$pkg_list\""
1992 exit 1
1993 fi
1994 else
1995 if test ! -r $PKG_LIST ; then
1996 echo "Error: can't read package list from PKG_LIST=\"$PKG_LIST\""
1997 exit 1
1998 else
1999 echo " using PKG_LIST=\"$PKG_LIST\""
2000 # Strip the comments and add all the names
2001 pkg_list=`cat $PKG_LIST | sed -e 's/#.*$//g' | $AWK '(NF>0){print $0}'`
2002 RETVAL=$?
2003 if test "x${RETVAL}" != x0 ; then
2004 printf "Error: can't parse package list "
2005 echo "-- please check PKG_LIST=\"$PKG_LIST\""
2006 exit 1
2007 fi
2008 fi
2009 fi
2010 for i in $pkg_list ; do
2011 PACKAGES="$PACKAGES $i"
2012 done
2013 echo " before group expansion packages are:$PACKAGES"
2014 if test "x${PKG_GROUPS}" != x ; then
2015 RET=1
2016 while test $RET = 1 ; do expand_pkg_groups; RET=$?; done
2017 echo " after group expansion packages are: $PACKAGES"
2018 fi
2019
2020 echo " applying DISABLE settings"
2021 echo "" > ./.tmp_pack
2022 for i in $PACKAGES ; do
2023 echo $i >> ./.tmp_pack
2024 done
2025 for i in `grep "-" ./.tmp_pack` ; do
2026 j=`echo $i | sed 's/[-]//'`
2027 DISABLE="$DISABLE $j"
2028 done
2029 pack=
2030 for p in $PACKAGES ; do
2031 addit="t"
2032 for d in $DISABLE ; do
2033 if test "x$p" = "x$d" ; then
2034 addit="f"
2035 fi
2036 done
2037 if test "x$addit" = xt ; then
2038 pack="$pack $p"
2039 fi
2040 done
2041 PACKAGES="$pack"
2042 echo " applying ENABLE settings"
2043 echo "" > ./.tmp_pack
2044 PACKAGES="$PACKAGES $ENABLE"
2045 # Test if each explicitly referenced package exists
2046 for i in $PACKAGES ; do
2047 j=`echo $i | sed 's/[-+]//'`
2048 if test ! -d "$ROOTDIR/pkg/$j" ; then
2049 echo "Error: dir '$ROOTDIR/pkg/$i' missing for package '$i'"
2050 exit 1
2051 fi
2052 echo $i >> ./.tmp_pack
2053 done
2054 PACKAGES=
2055 for i in `grep -v "-" ./.tmp_pack | sort | uniq` ; do
2056 PACKAGES="$PACKAGES $i"
2057 done
2058 rm -f ./.tmp_pack
2059 echo " packages are: $PACKAGES"
2060
2061 # Check for package MNC: if NetCDF is available, then build the MNC
2062 # template files ; otherwise, delete mnc from the list of packages.
2063 echo " $PACKAGES " | grep ' mnc ' > /dev/null 2>&1
2064 mnc_in=$?
2065 if test "x$HAVE_NETCDF" != xt ; then
2066 if test "x$mnc_in" = x0 ; then
2067 cat <<EOF
2068 *********************************************************************
2069 WARNING: the "mnc" package was enabled but tests failed to compile
2070 NetCDF applications. Please check that:
2071
2072 1) NetCDF is correctly installed for this compiler and
2073 2) the LIBS variable (within the "optfile") specifies the correct
2074 NetCDF library to link against.
2075
2076 Due to this failure, the "mnc" package is now DISABLED.
2077 *********************************************************************
2078 EOF
2079 PACKAGES=`echo $PACKAGES | sed -e 's/mnc//g'`
2080 DISABLE="$DISABLE mnc"
2081 else
2082 # this prevent to add mnc (due to pdepend rules) if not available
2083 DISABLE="$DISABLE mnc"
2084 fi
2085 else
2086 # we have NetCDF, we try to build MNC template files
2087 ( cd $ROOTDIR"/pkg/mnc" && $MAKE testclean && $MAKE templates ) > make_mnc.errors 2>&1
2088 RETVAL=$?
2089 if test "x${RETVAL}" = x0 ; then
2090 rm -f make_mnc.errors
2091 else
2092 echo "Error: problem encountered while building source files in pkg/mnc:"
2093 cat make_mnc.errors 1>&2
2094 if test "x$mnc_in" = x0 ; then
2095 exit 1
2096 else
2097 DISABLE="$DISABLE mnc"
2098 fi
2099 fi
2100 fi
2101
2102 # Check for package PROFILES: if NetCDF is not available,
2103 # then delete profiles from the list of available packages.
2104 if test "x$HAVE_NETCDF" != xt ; then
2105 echo " $PACKAGES " | grep ' profiles ' > /dev/null 2>&1
2106 RETVAL=$?
2107 if test "x$RETVAL" = x0 ; then
2108 cat <<EOF
2109 *********************************************************************
2110 WARNING: the "profiles" package was enabled but tests failed to
2111 compile NetCDF applications. Please check that:
2112
2113 1) NetCDF is correctly installed for this compiler and
2114 2) the LIBS variable (within the "optfile") specifies the correct
2115 NetCDF library to link against.
2116
2117 Due to this failure, the "profiles" package is now DISABLED.
2118 *********************************************************************
2119 EOF
2120 PACKAGES=`echo $PACKAGES | sed -e 's/profiles//g'`
2121 DISABLE="$DISABLE profiles"
2122 else
2123 # this prevent to add profiles (due to pdepend rules) if not available
2124 DISABLE="$DISABLE profiles"
2125 fi
2126 fi
2127
2128 if test "x${PKG_DEPEND}" != x ; then
2129 echo " applying package dependency rules"
2130 ck=
2131 while test "x$ck" != xtt ; do
2132 i=0
2133 # rtot=${#PNAME[@]}
2134 rtot=$nname
2135 while test $i -le $rtot ; do
2136
2137 # Is $pname in the current $PACKAGES list?
2138 # pname=${PNAME[$i]}
2139 tmp="pname=\"\$PNAME_$i\""
2140 eval $tmp
2141 pin="f"
2142 for p in $PACKAGES ; do
2143 if test "x$p" = "x$pname" ; then
2144 pin="t"
2145 fi
2146 done
2147 # or in the current $STANDARDDIRS list?
2148 for p in $STANDARDDIRS ; do
2149 if test "x$p" = "x$pname" ; then pin="t" ; fi
2150 done
2151
2152 # Is the DNAME entry a (+) or (-) rule ?
2153 tmp="dname=\"\$DNAME_$i\""
2154 eval $tmp
2155 plus="-"
2156 echo $dname | grep '^+' > /dev/null 2>&1
2157 RETVAL=$?
2158 if test "x$RETVAL" = x0 ; then
2159 plus="+"
2160 fi
2161
2162 # Is $dname in the current $PACKAGES list?
2163 dname=`echo $dname | sed -e 's/^[+-]//'`
2164 din="f"
2165 for p in $PACKAGES ; do
2166 if test "x$p" = "x$dname" ; then
2167 din="t"
2168 fi
2169 done
2170
2171 # Do we need to add $dname according to the dependency rules?
2172 if test "x$pin" = xt -a "x$plus" = "x+" -a "x$din" = xf ; then
2173 #echo " " $pname ": need to add :" $dname
2174 in_dis="f"
2175 for dis in $DISABLE ; do
2176 if test "x$dis" = "x$dname" ; then
2177 in_dis="t"
2178 fi
2179 done
2180 if test "x$in_dis" = xt ; then
2181 echo "Error: can't satisfy package dependencies:"
2182 echo " \"$dname\" is required by the dependency rules"
2183 echo " but is disallowed by the DISABLE settings"
2184 exit 1
2185 else
2186 PACKAGES="$PACKAGES $dname"
2187 ck=
2188 fi
2189 fi
2190
2191 # Do we need to get rid of $dname according to the dependency rules?
2192 if test "x$pin" = xt -a "x$plus" = "x-" -a "x$din" = xt; then
2193 echo "Error: can't satisfy package dependencies:"
2194 echo " \"$pname\" was requested but is disallowed by"
2195 echo " the dependency rules for \"$dname\""
2196 exit 1
2197 fi
2198 i=`echo "$i + 1" | bc -l`
2199 #i=$(( $i + 1 ))
2200 done
2201 ck=$ck"t"
2202 done
2203 echo " packages are: $PACKAGES"
2204 fi
2205 for i in $PACKAGES ; do
2206 adr="$ROOTDIR/pkg/$i"
2207 if test -d $adr ; then
2208 SOURCEDIRS="$SOURCEDIRS $adr"
2209 INCLUDEDIRS="$INCLUDEDIRS $adr"
2210 if test "x$i" = xautodiff ; then
2211 AUTODIFF_PKG_USED=t
2212 fi
2213 else
2214 echo "Error: the directory \"$adr\" for package $i doesn't exist"
2215 exit 1
2216 fi
2217 done
2218
2219 # Create a list of #define and #undef to enable/disable packages
2220 PACKAGES_DOT_H=PACKAGES_CONFIG.h
2221 # The following UGLY HACK sets multiple "#undef"s and it needs to go
2222 # away. On 2003-08-12, CNH, JMC, and EH3 agreed that the CPP_OPTIONS.h
2223 # file would eventually be split up so that all package-related #define
2224 # statements could be separated and handled only by genmake.
2225 names=`ls -1 "$ROOTDIR/pkg"`
2226 all_pack=
2227 DISABLED_PACKAGES=
2228 for n in $names ; do
2229 if test -d "$ROOTDIR/pkg/$n" -a "x$n" != xCVS ; then
2230 has_pack="f"
2231 for pack in $PACKAGES ; do
2232 if test "x$pack" = "x$n" ; then
2233 has_pack="t"
2234 break
2235 fi
2236 done
2237 if test "x$has_pack" = xf ; then
2238 undef=`echo "ALLOW_$n" | sed -e 'y/abcdefghijklmnopqrstuvwxyz/ABCDEFGHIJKLMNOPQRSTUVWXYZ/'`
2239 DISABLED_PACKAGES="$DISABLED_PACKAGES -U$undef"
2240 fi
2241 fi
2242 done
2243 ENABLED_PACKAGES=
2244 for i in $PACKAGES ; do
2245 def=`echo "ALLOW_$i" | sed -e 'y/abcdefghijklmnopqrstuvwxyz/ABCDEFGHIJKLMNOPQRSTUVWXYZ/'`
2246 ENABLED_PACKAGES="$ENABLED_PACKAGES -D$def"
2247 #eh3 DEFINES="$DEFINES -D$def"
2248
2249 #EH3 WARNING : This is an UGLY HACK that needs to be removed!!!
2250 case $i in
2251 aim_v23)
2252 ENABLED_PACKAGES="$ENABLED_PACKAGES -DALLOW_AIM"
2253 echo "Warning: ALLOW_AIM is set to enable aim_v23."
2254 ;;
2255 esac
2256 #EH3 WARNING : This is an UGLY HACK that needs to be removed!!!
2257
2258 done
2259
2260 echo " Adding STANDARDDIRS='$STANDARDDIRS'"
2261 BUILDDIR=${BUILDDIR:-.}
2262 if test "x$STANDARDDIRS" != x ; then
2263 for d in $STANDARDDIRS ; do
2264 adr="$ROOTDIR/$d/src"
2265 if test ! -d $adr ; then
2266 echo "Error: directory $adr not found -- please check that ROOTDIR=\"$ROOTDIR\""
2267 echo " is correct and that you correctly specified the STANDARDDIRS option"
2268 exit 1
2269 else
2270 SOURCEDIRS="$SOURCEDIRS $adr"
2271 fi
2272 adr="$ROOTDIR/$d/inc"
2273 if test ! -d $adr ; then
2274 echo "Error: directory $adr not found -- please check that ROOTDIR=\"$ROOTDIR\""
2275 echo " is correct and that you correctly specified the STANDARDDIRS option"
2276 exit 1
2277 else
2278 INCLUDEDIRS="$INCLUDEDIRS $adr"
2279 fi
2280 done
2281 fi
2282
2283 echo " Searching for *OPTIONS.h files in order to warn about the presence"
2284 echo " of \"#define \"-type statements that are no longer allowed:"
2285 CPP_OPTIONS=
2286 CPP_EEOPTIONS=
2287 spaths=". $INCLUDEDIRS"
2288 names=`ls -1 "$ROOTDIR/pkg"`
2289 for i in $spaths ; do
2290 try="$i/CPP_OPTIONS.h"
2291 if test -f $try -a -r $try -a "x$CPP_OPTIONS" = x ; then
2292 echo " found CPP_OPTIONS=\"$try\""
2293 CPP_OPTIONS="$try"
2294 # New safety test: make sure packages are not mentioned in CPP_OPTIONS.h
2295 for n in $names ; do
2296 test_for_package_in_cpp_options $CPP_OPTIONS $n
2297 done
2298 fi
2299 try="$i/CPP_EEOPTIONS.h"
2300 if test -f $try -a -r $try -a "x$CPP_EEOPTIONS" = x ; then
2301 echo " found CPP_EEOPTIONS=\"$try\""
2302 # New safety test: make sure MPI is not determined by CPP_EEOPTIONS.h
2303 #**** not yet enabled ****
2304 # test_for_mpi_in_cpp_eeoptions $try
2305 #**** not yet enabled ****
2306 CPP_EEOPTIONS="$try"
2307 fi
2308 done
2309 if test "x$CPP_OPTIONS" = x ; then
2310 echo "Error: can't find \"CPP_OPTIONS.h\" in the path list: $spaths"
2311 exit 1
2312 fi
2313
2314 # Here, we build the list of files to be "run through" the adjoint
2315 # compiler.
2316 if test -f ./adSrcFiles.tmp ; then
2317 rm -f ./adSrcFiles.tmp
2318 fi
2319 echo " Creating the list of files for the adjoint compiler."
2320 touch adSrcFiles.tmp
2321 for i in $SOURCEDIRS ; do
2322 list_files=`( cd $i && ls -1 *.list 2>/dev/null )`
2323 for j in $list_files ; do
2324 cat $i/$j >> adSrcFiles.tmp
2325 done
2326 done
2327 if test ! "x"$FS = "x.f" ; then
2328 cat adSrcFiles.tmp | sed -e "s/\.f/.$FS/g" > adSrcFiles.tmp_f
2329 mv -f adSrcFiles.tmp_f adSrcFiles.tmp
2330 fi
2331
2332 echo
2333 echo "=== Creating the Makefile ==="
2334 echo " setting INCLUDES"
2335 for i in $INCLUDEDIRS ; do
2336 if test ! -d $i ; then
2337 echo "Warning: can't find INCLUDEDIRS=\"$i\""
2338 fi
2339 done
2340
2341 if test ! "x$DIVA" = x ; then
2342 echo " Creating the pseudo-MPI include directory"
2343 INCLUDES="-I./mpi_headers $INCLUDES"
2344 rm -rf ./mpi_headers
2345 mkdir -p ./mpi_headers
2346
2347 if test "x$MPIINCLUDEDIR" = x ; then
2348 if test "x$MPIHOME" = x ; then
2349 MPIHOME='/usr'
2350 fi
2351 MPIINCLUDEDIR='$MPIHOME/include'
2352 fi
2353
2354 if test -r $MPIINCLUDEDIR/mpif.h ; then
2355 for i in $MPI_HEADER_FILES; do
2356 cp -p $MPIINCLUDEDIR/$i ./mpi_headers
2357 done
2358
2359 perl -i -pe 's/MPI_DISPLACEMENT_CURRENT=-1_8/MPI_DISPLACEMENT_CURRENT=-1/g' mpi_headers/mpif.h
2360 else
2361 echo " We cannot create a copy of mpif.h!"
2362 # exit -1
2363 fi
2364 fi
2365
2366 echo " Determining the list of source and include files"
2367 rm -rf .links.tmp
2368 mkdir .links.tmp
2369 touch .links.tmp/foo
2370 if test ! -r ".links.tmp/foo" ; then
2371 echo
2372 echo "ERROR : something is wrong with your directory permissions or"
2373 echo " your user file-creation mask (\"umask\") since creating a"
2374 echo " sub-dir, touch-ing a file within it, and then reading it is"
2375 echo " not working. Please try setting your umask to something"
2376 echo " sane such as:"
2377 echo
2378 echo " umask 0002"
2379 echo
2380 echo " and please verify that you have the proper permissions for"
2381 echo " creating sub-directories and then reading files created"
2382 echo " within them."
2383 echo
2384 exit 1
2385 fi
2386 rm -f .links.tmp/foo
2387
2388 if test "x$OPENAD" != x ; then
2389 OAD_DONT_COMPILE="/dev/null"
2390 OAD_DONT_TRANSFORM="/dev/null"
2391 OAD_KEEP_ORIGINAL="/dev/null"
2392 OAD_CB2M_FILES="/dev/null"
2393 echo " looking for dontCompile file: "
2394 for i in "." $MODS ; do
2395 if test -r $i"/dontCompile" ; then
2396 OAD_DONT_COMPILE=$i"/dontCompile"
2397 echo " found $OAD_DONT_COMPILE"
2398 break
2399 fi
2400 done
2401 echo " looking for dontTransform file: "
2402 for i in "." $MODS ; do
2403 if test -r $i"/dontTransform" ; then
2404 OAD_DONT_TRANSFORM=$i"/dontTransform"
2405 echo " found $OAD_DONT_TRANSFORM"
2406 break
2407 fi
2408 done
2409 echo " looking for keepOriginal file: "
2410 for i in "." $MODS ; do
2411 if test -r $i"/keepOriginal" ; then
2412 OAD_KEEP_ORIGINAL=$i"/keepOriginal"
2413 echo " found $OAD_KEEP_ORIGINAL"
2414 break
2415 fi
2416 done
2417 echo " looking for cb2mFiles: "
2418 for i in "." $MODS ; do
2419 if test -r $i"/cb2mFiles" ; then
2420 OAD_CB2M_FILES=$i"/cb2mFiles"
2421 echo " found $OAD_CB2M_FILES"
2422 break
2423 fi
2424 done
2425 echo " OpenAD exceptions: "
2426 fi
2427
2428 echo "# This section creates symbolic links" > srclinks.tmp
2429 echo "" >> srclinks.tmp
2430 printf 'F77_SRC_FILES = ' > F77srclist.tmp
2431 printf 'NON_AD_F77_SRC_FILES = ' > nonADF77srclist.tmp
2432 printf 'C_SRC_FILES = ' > csrclist.tmp
2433 printf 'F90_SRC_FILES = ' > F90srclist.tmp
2434 printf 'H_SRC_FILES = ' > hsrclist.tmp
2435 printf 'AD_FLOW_FILES = ' > ad_flow_files.tmp
2436 alldirs="$SOURCEDIRS $INCLUDEDIRS ."
2437 for d in $alldirs ; do
2438 deplist=
2439 sfiles=`( cd $d; echo *.[h,c,F] *.flow )`
2440 sfiles=`( echo $sfiles; cd $d; echo *.F90 )`
2441 if test "x$OPENAD" != x ; then
2442 sfiles=`( echo $sfiles | grep -v _cb2m\. )`
2443 fi
2444 for sf in $sfiles ; do
2445 if test ! -r ".links.tmp/$sf" ; then
2446 if test -f "$d/$sf" ; then
2447 ignore_f=f
2448 case $d/$sf in
2449 ./$PACKAGES_DOT_H)
2450 ignore_f=t
2451 ;;
2452 ./AD_CONFIG.h)
2453 ignore_f=t
2454 ;;
2455 ./FC_NAMEMANGLE.h)
2456 ignore_f=t
2457 ;;
2458 ./BUILD_INFO.h)
2459 ignore_f=t
2460 ;;
2461 ./EMBEDDED_FILES.h)
2462 ignore_f=t
2463 ;;
2464 *)
2465 # For the local directory *ONLY*,
2466 # ignore all soft-links
2467 if test "x$HAVE_TEST_L" = xt -a "x$d" = x. -a -L $sf ; then
2468 ignore_f=t
2469 else
2470 touch .links.tmp/$sf
2471 deplist="$deplist $sf"
2472 fi
2473 ;;
2474 esac
2475 if test "x$ignore_f" = xf ; then
2476 extn=`echo $sf | $AWK -F. '{print $NF}'`
2477 case $extn in
2478 F)
2479 echo " \\" >> F77srclist.tmp
2480 printf " $sf" >> F77srclist.tmp
2481 if test "x$OPENAD" != x ; then
2482 basename=${sf%%.F}
2483 isAD=`egrep ^$basename.f'[ ]*' adSrcFiles.tmp`
2484 if test -z "$isAD" ; then
2485 toBeIgnored=`egrep ^$basename'[ ]*' ${OAD_DONT_COMPILE}`
2486 if test -z "$toBeIgnored" ; then
2487 echo " \\" >> nonADF77srclist.tmp
2488 printf " $sf" >> nonADF77srclist.tmp
2489 else
2490 echo " not to be compiled : $sf"
2491 fi
2492 else # file is initially listed as an AD file we want to exclude it
2493 # or we want to retain the untransformed version
2494 notToBeTransformed=`egrep ^$basename'[ ]*' ${OAD_DONT_TRANSFORM}`
2495 untransformedVersionToBeKept=`egrep ^$basename'[ ]*' ${OAD_KEEP_ORIGINAL}`
2496 if test -n "$notToBeTransformed"; then
2497 echo " not to be transformed: $sf"
2498 fi
2499 if test -n "$untransformedVersionToBeKept" ; then
2500 echo " original to be kept : $sf"
2501 fi
2502 if test -n "$notToBeTransformed" -o -n "$untransformedVersionToBeKept" ; then
2503 echo " \\" >> nonADF77srclist.tmp
2504 printf " $sf" >> nonADF77srclist.tmp
2505 fi
2506 fi
2507 fi
2508 ;;
2509 F90)
2510 echo " \\" >> F90srclist.tmp
2511 printf " $sf" >> F90srclist.tmp
2512 ;;
2513 c)
2514 echo " \\" >> csrclist.tmp
2515 printf " $sf" >> csrclist.tmp
2516 ;;
2517 h)
2518 echo " \\" >> hsrclist.tmp
2519 printf " $sf" >> hsrclist.tmp
2520 ;;
2521 flow)
2522 echo " \\" >> ad_flow_files.tmp
2523 printf " $sf" >> ad_flow_files.tmp
2524 ;;
2525 esac
2526 fi
2527 fi
2528 fi
2529 done
2530 if test "x$deplist" != x ; then
2531 if test "$d" != "." ; then
2532 echo "" >> srclinks.tmp
2533 echo "# These files are linked from $d" >> srclinks.tmp
2534 echo "$deplist :" >> srclinks.tmp
2535 # We need to make sure that the link isn't already there.
2536 # This may happen when make thinks that a header file has to be "remade"
2537 # because a module it depends on has changed. In this case we do nothing.
2538 printf "\tif [ ! -L \$@ ]; then \$(LN) %s/\$@ \$@; fi\n" $d >> srclinks.tmp
2539 fi
2540 fi
2541 done
2542 rm -rf .links.tmp
2543 echo "" >> F77srclist.tmp
2544 echo "" >> nonADF77srclist.tmp
2545 echo "" >> csrclist.tmp
2546 echo "" >> F90srclist.tmp
2547 echo "" >> hsrclist.tmp
2548 echo "" >> ad_flow_files.tmp
2549
2550 CMDLINE=$0
2551 for xx in "$@" ; do nw=`echo $xx | wc -w`
2552 if test $nw = '1' ; then CMDLINE="$CMDLINE $xx"
2553 else CMDLINE="$CMDLINE '$xx'" ; fi
2554 done
2555
2556 if test -f $MAKEFILE ; then
2557 mv -f $MAKEFILE "$MAKEFILE.old"
2558 fi
2559 echo " Writing makefile: $MAKEFILE"
2560 echo "# Multithreaded + multi-processing makefile for:" > $MAKEFILE
2561 echo "# $MACHINE" >> $MAKEFILE
2562 echo "# This makefile was generated automatically on" >> $MAKEFILE
2563 echo "# $THISDATE" >> $MAKEFILE
2564 echo "# by the command:" >> $MAKEFILE
2565 echo "# $CMDLINE" >> $MAKEFILE
2566 echo "# executed by:" >> $MAKEFILE
2567 echo "# ${THISUSER}@${THISHOST}:${THISCWD}" >> $MAKEFILE
2568
2569 EXE_AD=$EXECUTABLE"_ad"
2570 EXE_FTL=$EXECUTABLE"_ftl"
2571 EXE_SVD=$EXECUTABLE"_svd"
2572
2573 cat >>$MAKEFILE <<EOF
2574 #
2575 # OPTFILE="$OPTFILE"
2576 #
2577 # BUILDDIR : Directory where object files are written
2578 # SOURCEDIRS : Directories containing the source (.F) files
2579 # INCLUDEDIRS : Directories containing the header-source (.h) files
2580 # EXEDIR : Directory where executable that is generated is written
2581 # EXECUTABLE : Full path of executable binary
2582 #
2583 # CPP : C-preprocessor command
2584 # INCLUDES : Directories searched for header files
2585 # DEFINES : Macro definitions for CPP
2586 # MAKEDEPEND : Dependency generator
2587 # KPP : Special preprocessor command (specific to platform)
2588 # KFLAGS : Flags for KPP
2589 # FC : Fortran compiler command
2590 # FFLAGS : Configuration/debugging options for FC
2591 # FOPTIM : Optimization options for FC
2592 # LINK : Command for link editor program
2593 # LIBS : Library flags /or/ additional optimization/debugging flags
2594
2595 ROOTDIR = ${ROOTDIR}
2596 BUILDDIR = ${BUILDDIR}
2597 SOURCEDIRS = ${SOURCEDIRS}
2598 INCLUDEDIRS = ${INCLUDEDIRS}
2599 EXEDIR = ${EXEDIR}
2600 EXECUTABLE = \$(EXEDIR)/${EXECUTABLE}
2601 TOOLSDIR = ${TOOLSDIR}
2602
2603 #eh3 new defines for the adjoint work
2604 AUTODIFF = ${ROOTDIR}/pkg/autodiff
2605 EXE_AD = ${EXE_AD}
2606 EXE_FTL = ${EXE_FTL}
2607 EXE_SVD = ${EXE_SVD}
2608
2609 ENABLED_PACKAGES = ${ENABLED_PACKAGES}
2610 DISABLED_PACKAGES = ${DISABLED_PACKAGES}
2611
2612 # These files are created by Makefile
2613 SPECIAL_FILES = ${PACKAGES_DOT_H} AD_CONFIG.h FC_NAMEMANGLE.h BUILD_INFO.h
2614 EOF
2615
2616 if test "x$EMBED_SRC" = xt ; then
2617 echo "EMBEDDED_FILES = EMBEDDED_FILES.h" >>$MAKEFILE
2618 else
2619 echo "EMBEDDED_FILES = " >>$MAKEFILE
2620 fi
2621
2622 cat >>$MAKEFILE <<EOF
2623 # Unix ln (link)
2624 LN = ${LN}
2625 # C preprocessor
2626 CPP = cat \$< | ${S64} | ${CPP}
2627 # Dependency generator
2628 MAKEDEPEND = ${MAKEDEPEND}
2629 # Special preprocessor (KAP on DECs, FPP on Crays)
2630 KPP = ${KPP}
2631 # Fortran compiler
2632 FC = ${FC}
2633 # Fortran compiler
2634 F90C = ${F90C}
2635 # C compiler
2636 CC = ${CC}
2637 # Link editor
2638 LINK = ${LINK} ${LDADD}
2639
2640 # Defines for CPP
2641 DEFINES = ${DEFINES}
2642 # Includes for CPP
2643 INCLUDES = ${INCLUDES}
2644 # Flags for KPP
2645 KFLAGS1 = ${KFLAGS1}
2646 KFLAGS2 = ${KFLAGS2}
2647 # Optim./debug for FC
2648 FFLAGS = ${FFLAGS} ${FEXTRAFLAGS}
2649 FOPTIM = ${FOPTIM}
2650 # Optim./debug for FC
2651 F90FLAGS = ${F90FLAGS}
2652 F90OPTIM = ${F90OPTIM}
2653 F90FIXEDFORMAT = ${F90FIXEDFORMAT}
2654 # Flags for CC
2655 CFLAGS = ${CFLAGS}
2656 # Files that should not be optimized
2657 NOOPTFILES = ${NOOPTFILES}
2658 NOOPTFLAGS = ${NOOPTFLAGS}
2659 # Flags and libraries needed for linking
2660 LIBS = ${LIBS}
2661 # Name of the Mekfile
2662 MAKEFILE=${MAKEFILE}
2663
2664 EOF
2665
2666 cat F77srclist.tmp >> $MAKEFILE
2667 cat nonADF77srclist.tmp >> $MAKEFILE
2668 cat csrclist.tmp >> $MAKEFILE
2669 cat F90srclist.tmp >> $MAKEFILE
2670 cat hsrclist.tmp >> $MAKEFILE
2671 cat ad_flow_files.tmp >> $MAKEFILE
2672
2673 rm -f F77srclist.tmp nonADF77srclist.tmp csrclist.tmp F90srclist.tmp hsrclist.tmp ad_flow_files.tmp
2674
2675 echo >> $MAKEFILE
2676
2677 # add definitions for preprocessed sources
2678 # and note that not all systems allow case sensitive extensions
2679 # hence the $FS and $FS90 here.
2680 # for fixed format f90 files we use ff90 or FF90 resp
2681 # but these are not expected to be the original source files
2682
2683 echo 'F77_PP_SRC_FILES = $(F77_SRC_FILES:.F=.'$FS')' >> $MAKEFILE
2684 echo 'F90_PP_SRC_FILES = $(F90_SRC_FILES:.F90=.'$FS90')' >> $MAKEFILE
2685 echo 'OBJFILES= $(F77_SRC_FILES:.F=.o) $(C_SRC_FILES:.c=.o) $(F90_SRC_FILES:.F90=.o)' >> $MAKEFILE
2686 echo 'FLOFILES = $(AD_FLOW_FILES:.flow=.flowdir)' >> $MAKEFILE
2687 echo >> $MAKEFILE
2688 echo '.SUFFIXES:' >> $MAKEFILE
2689 echo '.SUFFIXES: .o .'$FS' .p .F .c .f'$FS90' .'$FS90' .FF90 .F90 .flowdir .flow' >> $MAKEFILE
2690
2691 cat >>$MAKEFILE <<EOF
2692
2693 all: \$(EXECUTABLE)
2694 \$(EXECUTABLE): \$(SPECIAL_FILES) \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) \$(OBJFILES) \$(EMBEDDED_FILES)
2695 @echo Creating \$@ ...
2696 \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) \$(LIBS)
2697
2698 depend:
2699 @make links
2700 \$(MAKEDEPEND) -o .$FS \$(DEFINES) \$(INCLUDES) \$(F77_SRC_FILES)
2701 \$(TOOLSDIR)/f90mkdepend >> \$(MAKEFILE)
2702 -rm -f makedepend.out
2703
2704 lib: libmitgcmuv.a
2705
2706 libmitgcmuv.a: \$(OBJFILES)
2707 ar rcv libmitgcmuv.a \$(OBJFILES)
2708 ar d libmitgcmuv.a main.o
2709
2710 obj: \$(OBJFILES)
2711
2712 links: \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) \$(SPECIAL_FILES)
2713
2714 small_f: \$(F77_PP_SRC_FILES) \$(F90_PP_SRC_FILES)
2715
2716 output.txt: \$(EXECUTABLE)
2717 @printf 'running ... '
2718 @\$(EXECUTABLE) > \$@
2719
2720 # remove most of the files that "make" generates
2721 clean:
2722 -rm -rf *.p *.$FS90 *.mod ${RMFILES} work.{pc,pcl} *.template
2723 -rm -rf *.o
2724 -rm -rf *.$FS *.flowdir
2725 -rm -rf *.f$FS90 \$(AD_CLEAN) ad_input*
2726
2727 # remove most of the files that "make" and "make depend" generate
2728 Clean:
2729 @make clean
2730 @make cleanlinks
2731 -rm -f \$(SPECIAL_FILES) f90mkdepend.log $MAKEFILE.old
2732 -rm -f taf_command taf_output taf_ad.log taf_ad_flow.log
2733 -rm -f genmake_warnings genmake_errors make.log
2734
2735 # remove also the executable, files that "genmake2" generates (except Makefile)
2736 # and output from a run (plus log files from testreport)
2737 CLEAN:
2738 @make Clean
2739 -rm -f \$(EXECUTABLE) \$(EXE_AD) *.bak
2740 -rm -f $LOGFILE genmake_state genmake_*optfile
2741 -rm -f SIZE.h.mpi genmake.tr_log make.tr_log
2742 -find \$(EXEDIR) -name "*.meta" -exec rm {} \;
2743 -find \$(EXEDIR) -name "*.data" -exec rm {} \;
2744 -find \$(EXEDIR) -name "fort.*" -exec rm {} \;
2745 -rm -f *.txt STD* *diagnostics.log datetime
2746 -rm -f *_MIT_CE_000.opt0000 costfunction*0000
2747 -rm -rf mnc_test_*
2748
2749 makefile:
2750 $THIS_SCRIPT $G2ARGS
2751 cleanlinks:
2752 -find . -type l -exec rm {} \;
2753
2754 # Special targets (SPECIAL_FILES) which are created by make
2755 ${PACKAGES_DOT_H}:
2756 @echo Creating \$@ ...
2757 @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bPACKAGES_CONFIG_H "Disabled packages:" \$(DISABLED_PACKAGES) " " "Enabled packages:" \$(ENABLED_PACKAGES) > \$@
2758 AD_CONFIG.h:
2759 @echo Creating \$@ ...
2760 @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > \$@
2761 FC_NAMEMANGLE.h:
2762 @echo Creating \$@ ...
2763 echo "$FC_NAMEMANGLE" > \$@
2764
2765 BUILD_INFO.h:
2766 @echo Creating \$@ ...
2767 EOF
2768
2769 test ! "x$THISVER" = x && echo " -echo \"#define THISVER '$THISVER'\" > \$@" >> $MAKEFILE
2770 test ! "x$THISUSER" = x && echo " -echo \"#define THISUSER '$THISUSER'\" >> \$@" >> $MAKEFILE
2771 test ! "x$THISDATE" = x && echo " -echo \"#define THISDATE '$THISDATE'\" >> \$@" >> $MAKEFILE
2772 test ! "x$THISHOST" = x && echo " -echo \"#define THISHOST '$THISHOST'\" >> \$@" >> $MAKEFILE
2773
2774 if test "x$EMBED_SRC" = xt ; then
2775 cat >>$MAKEFILE <<EOF
2776
2777 decode_files.o : EMBEDDED_FILES.h
2778
2779 ## \$(F77_PP_SRC_FILES)
2780 all_fF.tar.gz : \$(SPECIAL_FILES) \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) \$(F77_PP_SRC_FILES) Makefile
2781 @echo Creating \$@ ...
2782 -tar -hcf all_fF.tar \$(SPECIAL_FILES) \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) \$(F77_PP_SRC_FILES) Makefile
2783 -rm -f all_fF.tar.gz
2784 -gzip all_fF.tar
2785
2786 EMBEDDED_FILES.h : all_fF.tar.gz
2787 @echo Creating \$@ ...
2788 -\${ROOTDIR}/tools/embed_encode/encode_files EMBEDDED_FILES.h all_fF.tar.gz
2789
2790 EOF
2791 fi
2792
2793 cat >>$MAKEFILE <<EOF
2794
2795 # The normal chain of rules is ( .F - .$FS - .o )
2796
2797 ## This nullifies any default implicit rules concerning these two file types:
2798 ## %.o : %.F
2799
2800 .F.$FS:
2801 \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@
2802 .$FS.o:
2803 \$(FC) \$(FFLAGS) \$(FOPTIM) -c \$<
2804 .F.o:
2805 \$(FC) \$(FFLAGS) \$(FOPTIM) -c \$<
2806 .F90.$FS90:
2807 \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@
2808 .FF90.f$FS90:
2809 \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@
2810 .$FS90.o:
2811 \$(F90C) \$(F90FLAGS) \$(F90OPTIM) -c \$<
2812 .f$FS90.o:
2813 cp \$< \$(basename \$<).f90
2814 \$(F90C) \$(F90FLAGS) \$(F90OPTIM) -c \$(F90FIXEDFORMAT) \$(basename \$<).f90
2815 .c.o:
2816 \$(CC) \$(CFLAGS) \$(DEFINES) \$(INCLUDES) -c \$<
2817 .flow.flowdir:
2818 \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@
2819
2820 # Special exceptions that use the ( .F - .p - .$FS - .o ) rule-chain
2821 .F.p:
2822 \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@
2823 .p.$FS:
2824 \$(KPP) \$(KFLAGS1)\$@ \$(KFLAGS2) \$<
2825
2826 EOF
2827
2828 #=========================================
2829 #=== Automatic Differentiation Rules ===
2830 #=== for TAMC/TAF ======================
2831
2832 if test "x$OPENAD" = x ; then
2833
2834 cat >>$MAKEFILE <<EOF
2835
2836 TAMC = ${TAMC}
2837 TAF = ${TAF}
2838
2839 TAF_EXTRA = ${TAF_EXTRA}
2840 TAMC_EXTRA = ${TAMC_EXTRA}
2841
2842 EOF
2843
2844 ad_vars="AD_TAMC_FLAGS AD_TAF_FLAGS"
2845 ad_vars="$ad_vars FTL_TAMC_FLAGS FTL_TAF_FLAGS"
2846 ad_vars="$ad_vars SVD_TAMC_FLAGS SVD_TAF_FLAGS"
2847 for i in $ad_vars ; do
2848 name=$i
2849 t1="t2=\$"`echo "$i"`
2850 eval $t1
2851 printf "%-20s = " $name >> $MAKEFILE
2852 echo "$t2" | sed -e 's| \+| |g' >> $MAKEFILE
2853 done
2854
2855 echo " Add the source list for AD code generation"
2856 echo >> $MAKEFILE
2857 printf "AD_FILES = " >> $MAKEFILE
2858 AD_FILES=`cat adSrcFiles.tmp`
2859 for i in $AD_FILES ; do
2860 echo " \\" >> $MAKEFILE
2861 printf " $i" >> $MAKEFILE
2862 done
2863 echo >> $MAKEFILE
2864 rm -f adSrcFiles.tmp
2865
2866 cat >>$MAKEFILE <<EOF
2867
2868 # ... AD ...
2869 adall: \$(EXE_AD)
2870 adtaf: ad_taf_output.$FS
2871 adtamc: ad_tamc_output.$FS
2872
2873 ad_input_code.$FS: \$(AD_FILES) \$(H_SRC_FILES) \$(AD_FLOW_FILES)
2874 @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -DALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ad_config.template
2875 cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
2876 -rm -f ad_config.template
2877 @make \$(F77_PP_SRC_FILES)
2878 @make \$(FLOFILES)
2879 cat \$(FLOFILES) \$(AD_FILES) | sed -f \$(TOOLSDIR)/remove_comments_sed > ad_input_code.$FS
2880
2881 ad_taf_output.$FS: ad_input_code.$FS
2882 \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.$FS
2883 ls -l ad_input_code_ad.$FS
2884 cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.$FS
2885
2886 adtafonly:
2887 \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.$FS
2888 ls -l ad_input_code_ad.$FS
2889 cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.$FS
2890
2891 \${EXE_AD}: ad_taf_output.o \$(OBJFILES)
2892 \$(LINK) -o \${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_taf_output.o \$(LIBS)
2893
2894 ad_tamc_output.$FS: ad_input_code.$FS
2895 \$(TAMC) \$(AD_TAMC_FLAGS) \$(TAMC_EXTRA) ad_input_code.$FS
2896 cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_tamc_output.$FS
2897
2898 ad_tamc: ad_tamc_output.o \$(OBJFILES)
2899 \$(LINK) -o ${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_tamc_output.o \$(LIBS)
2900
2901 adonlyfwd:
2902 patch < \$(TOOLSDIR)/ad_taf_output.f.onlyfwd.diff
2903
2904 adtrick:
2905 patch < \$(TOOLSDIR)/ad_taf_output.f.adtrick.diff
2906
2907 adobj: ad_taf_output.o \$(OBJFILES)
2908
2909 # ... FTL ...
2910 ftlall: ftl_taf
2911 ftltaf: ftl_taf_output.$FS
2912 ftltamc: ftl_tamc_output.$FS
2913
2914 ftl_input_code.$FS: \$(AD_FILES) \$(H_SRC_FILES)
2915 @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ftl_config.template
2916 cmp ftl_config.template AD_CONFIG.h || cat ftl_config.template > AD_CONFIG.h
2917 -rm -f ftl_config.template
2918 @make \$(F77_PP_SRC_FILES)
2919 @make \$(AD_FLOW_FILES)
2920 cat \$(AD_FLOW_FILES) \$(AD_FILES) > ftl_input_code.$FS
2921
2922 ftl_taf_output.$FS: ftl_input_code.$FS
2923 \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.$FS
2924 ls -l ftl_input_code_ftl.$FS
2925 cat ftl_input_code_ftl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.$FS
2926
2927 ftltafonly:
2928 \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.$FS
2929 ls -l ftl_input_code_ftl.$FS
2930 cat ftl_input_code_ftl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.$FS
2931
2932 ftl_taf: ftl_taf_output.o \$(OBJFILES)
2933 \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_taf_output.o \$(LIBS)
2934
2935 ftl_tamc_output.$FS: ftl_input_code.$FS
2936 \$(TAMC) \$(FTL_TAMC_FLAGS) \$(TAMC_EXTRA) ftl_input_code.$FS
2937 cat ftl_input_code_ftl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_tamc_output.$FS
2938
2939 ftl_tamc: ftl_tamc_output.o \$(OBJFILES)
2940 \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_tamc_output.o \$(LIBS)
2941
2942 # ... SVD ...
2943 svdtaf: ad_taf_output.$FS ftl_taf_output.$FS
2944 @echo "--->>> Only ran TAF to generate SVD code! <<<---"
2945 @echo "--->>> Do make svdall afterwards to compile. <<<---"
2946 svdall: svd_touch svd_taf
2947
2948 svd_taf: \$(OBJFILES)
2949 \$(LINK) -o mitgcmuv_svd \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_taf_output.o ftl_taf_output.o \$(LIBS)
2950
2951 @echo "--->>> Only COMPILE svd code! <<<---"
2952 @echo "--->>> Assumes you previously <<<---"
2953 @echo "--->>> did make svdtaf <<<---"
2954
2955 svd_touch:
2956 @echo "--->>> Only COMPILE svd code! <<<---"
2957 @echo "--->>> Assumes you previously <<<---"
2958 @echo "--->>> did make svdtaf <<<---"
2959 touch ad_taf_output.$FS ftl_taf_output.$FS
2960 \$(FC) \$(FFLAGS) \$(FOPTIM) -c ad_taf_output.$FS
2961 \$(FC) \$(FFLAGS) \$(FOPTIM) -c ftl_taf_output.$FS
2962 @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ftl_config.template
2963 cmp ftl_config.template AD_CONFIG.h || cat ftl_config.template > AD_CONFIG.h
2964 -rm -f ftl_config.template
2965
2966 EOF
2967
2968 fi
2969
2970 #=== for OpenAD ========================
2971
2972 if test "x$OPENAD" != x ; then
2973
2974 # ============ begin OpenAD specific section ==============
2975
2976 cat >>$MAKEFILE <<EOF
2977
2978 # all the source files linked from the various locations:
2979 ALL_LINKED_FILES= \
2980 \$(F77_SRC_FILES) \
2981 \$(C_SRC_FILES) \
2982 \$(H_SRC_FILES) \
2983 \$(F90_SRC_FILES) \
2984 \$(SPECIAL_FILES)
2985
2986 ifndef OPENADROOT
2987 \$(error "Error: environment variable OPENADROOT not defined!")
2988 endif
2989
2990 ifndef XAIFSCHEMAROOT
2991 \$(error "Error: environment variable XAIFSCHEMAROOT not defined!")
2992 endif
2993
2994 ifndef XAIFBOOSTERROOT
2995 \$(error "Error: environment variable XAIFBOOSTERROOT not defined!")
2996 endif
2997
2998 EOF
2999
3000 echo " Add the source list for common block to module conversion "
3001 echo >> $MAKEFILE
3002 printf "CB2M_F90_SRC_NAMES = " >> $MAKEFILE
3003 for i in `cat ${OAD_CB2M_FILES}` ; do
3004 echo " \\" >> $MAKEFILE
3005 printf " $i" >> $MAKEFILE
3006 done
3007 echo >> $MAKEFILE
3008
3009 echo " Add the source list for AD code generation"
3010 echo >> $MAKEFILE
3011 printf "AD_FILES = " >> $MAKEFILE
3012 for i in `cat ${OAD_CB2M_FILES}` ; do
3013 echo " \\" >> $MAKEFILE
3014 printf " ${i}_mod.f$FS90" >> $MAKEFILE
3015 done
3016 AD_FILES=`cat adSrcFiles.tmp`
3017 for i in $AD_FILES ; do
3018 basename=${i%%.f}
3019 toBeIgnored=`egrep ^$basename'[ ]*' ${OAD_DONT_COMPILE} ${OAD_DONT_TRANSFORM}`
3020 if test -z "$toBeIgnored" ; then
3021 echo " \\" >> $MAKEFILE
3022 printf " $i" >> $MAKEFILE
3023 fi
3024 done
3025 echo >> $MAKEFILE
3026 rm -f adSrcFiles.tmp
3027
3028 cat >>$MAKEFILE <<EOF
3029
3030 adAll: \$(EXE_AD)
3031 .PHONY: adAll
3032
3033 CB2M_F90_PP_SRC_FILES=\$(addsuffix _mod.f$FS90, \$(CB2M_F90_SRC_NAMES))
3034
3035 .PRECIOUS: \$(CB2M_F90_PP_SRC_FILES) \$(NON_AD_F77_SRC_FILES:.F=_cb2m.f$FS90)
3036
3037 .PHONY: adDepend
3038 adDepend: \$(ALL_LINKED_FILES) \$(addsuffix _mod.h, \$(CB2M_F90_SRC_NAMES)) \$(addsuffix _mod.FF90, \$(CB2M_F90_SRC_NAMES)) \$(F77_SRC_FILES:.F=_cb2m.FF90)
3039 \$(MAKEDEPEND) -o .$FS \$(DEFINES) \$(INCLUDES) \$(F77_SRC_FILES)
3040 \$(TOOLSDIR)/f90mkdepend >> \$(MAKEFILE)
3041 -rm -f makedepend.out
3042
3043 OPENAD_SUPPORT_F90_SRC_FILES = \
3044 w2f__types.F90 \
3045 OAD_active.F90 \
3046 OAD_cp.F90 \
3047 OAD_rev.F90 \
3048 OAD_tape.F90
3049
3050 OPENAD_SUPPORT_C_SRC_FILES = \
3051 iaddr.c \
3052 timeRatio.c
3053
3054 f95_test_mods.f90: \$(OPENAD_SUPPORT_F90_SRC_FILES:F90=$FS90)
3055 cat \$^ > \$@
3056
3057 f95_test.f90: all_mods.xb.x2w.w2f.pp.f$FS90 \$(NON_AD_F77_SRC_FILES:.F=_cb2m.f$FS90) ad_input_code.w2f.pre.xb.x2w.w2f.td.pp.f$FS90
3058 cat \$^ > \$@
3059
3060 f95_test.out: f95_test_mods.f90 f95_test.f90
3061 f95 -fixed -w=unused -maxcontin=132 -c f95_test_mods.f90 > \$@ 2>&1
3062 f95 -fixed -w=unused -maxcontin=132 -c -fixed f95_test.f90 >> \$@ 2>&1
3063
3064 # the file included below is created by the
3065 # postProcessor and its inclusion sets the
3066 # variable POSTPROCESSEDFILES
3067 # used below. Because the file is made during
3068 # make it won't be read until the second (recursive)
3069 # invocation in the rule below
3070 -include postProcess.make
3071
3072 AD_OBJ_FILES_S1=\$(OPENAD_SUPPORT_F90_SRC_FILES:.F90=.o) \$(OPENAD_SUPPORT_C_SRC_FILES:.c=.o) \$(POSTPROCESSEDFILES:.f$FS90=.o)
3073
3074 AD_OBJ_FILES_S2=\$(AD_OBJ_FILES_S1) \$(NON_AD_F77_SRC_FILES:.F=_cb2m.o) \$(C_SRC_FILES:.c=.o) \$(F90_SRC_FILES:.F90=.o)
3075
3076 postProcess.comp: \$(ALL_LINKED_FILES) \$(addsuffix _mod.h, \$(CB2M_F90_SRC_NAMES)) postProcess.tag \$(AD_OBJ_FILES_S1)
3077 ifeq (\$(MAKELEVEL),0)
3078 \$(MAKE) adAll
3079 else
3080 touch \$@
3081 endif
3082
3083 \$(EXE_AD): \$(ALL_LINKED_FILES) \$(addsuffix _mod.h, \$(CB2M_F90_SRC_NAMES)) postProcess.comp \$(AD_OBJ_FILES_S2)
3084 ifeq (\$(MAKELEVEL),1)
3085 \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(AD_OBJ_FILES_S2) \$(LIBS)
3086 else
3087 touch \$@
3088 endif
3089
3090 # makefile debug rule
3091 openad: ad_input_code.w2f.pre.xb.x2w.w2f.td.pp.f$FS90
3092 .PHONY: openad
3093
3094 # create the module files
3095 %_mod.FF90 : %.h ../OAD_support/cb2mGetModules.csh ../OAD_support/cb2mGetModules.awk
3096 ../OAD_support/cb2mGetModules.csh $< ../OAD_support/cb2mGetModules.awk
3097
3098 # create the header files
3099 %_mod.h : %.h ../OAD_support/cb2mGetHeaders.csh ../OAD_support/cb2mGetHeaders.awk
3100 ../OAD_support/cb2mGetHeaders.csh $< ../OAD_support/cb2mGetHeaders.awk \$(CB2M_F90_SRC_NAMES)
3101
3102 # change everybody else to use the new module files:
3103 %_cb2m.FF90 : %.F ../OAD_support/cb2mUseModules.bash
3104 ../OAD_support/cb2mUseModules.bash $< ${MPI}
3105
3106 # makefile debug rule
3107 small_f: \$(CB2M_F90_PP_SRC_FILES)
3108 .PHONY: small_f
3109
3110 ad_output.txt: \$(EXE_AD)
3111 @printf 'linking data files ... '
3112 \$(LN) -f ../input_ad/data* ../input_ad/eedata .
3113 \$(LN) -f ../../global_ocean.90x40x15/input/*.bin .
3114 @printf 'running ... '
3115 @./\$(EXE_AD) > \$@
3116
3117 CB2M_AD_FILES=\$(AD_FILES:.f=_cb2m.f$FS90)
3118 ad_input_code.f$FS90: \$(CB2M_AD_FILES)
3119 cat \$^ > \$@
3120
3121 # strip all comments and blanks to reduce
3122 # the file size in order to reduce perl's memory requirements
3123 ad_input_code_sf.f$FS90 : ad_input_code.f$FS90
3124 cat \$^ | sed -f ../OAD_support/strip.sed | sed -f ../OAD_support/stop2print.sed > \$@
3125
3126 # mfef90 preprocessing
3127 # expand statement functions
3128 # expose mfef90 specific substring handling
3129 # add the w2f__types module
3130 ad_input_code_sf.w2f.f$FS90: ad_input_code_sf.f$FS90 mfef90 whirl2f whirl2f_be w2f__types.f90
3131 ./mfef90 -r8 -z -F -N132 \$<
3132 mv \$<.B \$(basename \$<).B
3133 ./whirl2f -openad \$(basename \$<).B
3134 cat w2f__types.f90 \$(basename \$<).w2f.f > \$@
3135
3136 # canonicalizer
3137 ad_input_code_sf.w2f.pre.f$FS90: ad_input_code_sf.w2f.f$FS90 preProcess.py
3138 ./preProcess.py --timing --r8 -H -S \$< -o \$@
3139
3140 # F -> WHIRL
3141 # note that the canonicalized version cuts off at col 72
3142 # doing this also for string constants which is ok as long
3143 # as we are in fixed mode and cut of exactly there.
3144 # Otherwise mfef90 patches in spaces to fill up to 72 (or 132)
3145 # characters respectively.
3146 ad_input_code_sf.w2f.pre.B: ad_input_code_sf.w2f.pre.f$FS90 mfef90
3147 ./mfef90 -r8 -z -F \$<
3148 mv \$<.B \$@
3149
3150 # WHIRL -> XAIF
3151 ad_input_code_sf.w2f.pre.xaif : ad_input_code_sf.w2f.pre.B whirl2xaif
3152 ./whirl2xaif -s -n --debug 1 -o \$@ \$<
3153
3154 # XAIF -> XAIF'
3155 ad_input_code_sf.w2f.pre.xb.xaif : ad_input_code_sf.w2f.pre.xaif xaif.xsd xaif_base.xsd xaif_inlinable_intrinsics.xsd xaif_derivative_propagator.xsd xaif_output.xsd oadDriver
3156 ./oadDriver -f -t forward_step -i \$< -c \${XAIFSCHEMAROOT}/schema/examples/inlinable_intrinsics.xaif -o \$@ -I -r
3157
3158 # XAIF' -> WHIRL'
3159 ad_input_code_sf.w2f.pre.xb.x2w.B : ad_input_code_sf.w2f.pre.xb.xaif xaif2whirl
3160 ./xaif2whirl --debug 1 ad_input_code_sf.w2f.pre.B \$<
3161
3162 # WHIRL' -> F'
3163 ad_input_code_sf.w2f.pre.xb.x2w.w2f.f$FS90: ad_input_code_sf.w2f.pre.xb.x2w.B whirl2f whirl2f_be
3164 ./whirl2f -FLIST:ftn_file=\$@ -openad \$<
3165
3166 # insert template directives
3167 ad_input_code_sf.w2f.pre.xb.x2w.w2f.td.f$FS90: ad_input_code_sf.w2f.pre.xb.x2w.w2f.f$FS90 ../OAD_support/insertTemplateDir.bash
3168 ../OAD_support/insertTemplateDir.bash \$< \$@
3169
3170 PPEXTRAS=\$(wildcard ../OAD_support/ad_template.*.F) ../OAD_support/ad_inline.F
3171 # postprocess F'
3172 postProcess.tag: ad_input_code_sf.w2f.pre.xb.x2w.w2f.td.f$FS90 postProcess.py \$(PPEXTRAS:.F=.f)
3173 # the target is a placeholder to signal execution of the rule
3174 touch \$@
3175 # this step also creates the file postProcess.make but we cannot
3176 # name it as the target or else make will try to remake it for
3177 # the include directive above for any rule, e.g. make clean
3178 ./postProcess.py --progress --timing --infoUnitFile w2f__types.f90 --outputFormat=fixed -m r -i ../OAD_support/ad_inline.f --width 4 \$<
3179
3180 # setup some links
3181 %.xsd:
3182 \$(LN) \${XAIFSCHEMAROOT}/schema/\$@ .
3183
3184 mfef90:
3185 \$(LN) \${OPEN64ROOT}/crayf90/sgi/mfef90 .
3186
3187 # link the support files:
3188 \$(OPENAD_SUPPORT_F90_SRC_FILES) \$(OPENAD_SUPPORT_C_SRC_FILES):
3189 \$(LN) ../OAD_support/\$@ .
3190
3191 whirl2xaif xaif2whirl:
3192 \$(LN) \${OPENADFORTTK}/bin/\$@ .
3193
3194 preProcess.py postProcess.py:
3195 \$(LN) \${OPENADFORTTK_BASE}/tools/SourceProcessing/\$@ .
3196
3197 whirl2f whirl2f_be:
3198 \$(LN) \${OPEN64ROOT}/whirl2f/\$@ .
3199
3200 oadDriver:
3201 \$(LN) \${XAIFBOOSTERROOT}/xaifBooster/algorithms/BasicBlockPreaccumulationReverse/driver/oadDriver \$@
3202
3203 AD_CLEAN += *_mod.h *_mod.F90 *.FF90 *.mod-whirl temp.sed oad_cp.* postProcess.make postProcess.tag postProcess.comp \$(PPEXTRAS:.F=.f)
3204
3205 # ============ end OpenAD specific section ==============
3206
3207 EOF
3208
3209 fi
3210
3211 #=========================================
3212
3213 if test "x$EXEHOOK" != x ; then
3214 printf "\nexehook:\n\t%s\n" $EXEHOOK >> $MAKEFILE
3215 fi
3216
3217 echo " Making list of \"exceptions\" that need \".p\" files"
3218 for i in $KPPFILES ; do
3219 base=`echo $i | sed -e 's/\/.*\///g' | sed -e 's/\..*$//g'`
3220 RETVAL=$?
3221 if test "x$RETVAL" != x0 ; then
3222 echo "Error: unable to add file \"$i\" to the exceptions list"
3223 fi
3224 echo "$base.$FS: $base.p" >> $MAKEFILE
3225 done
3226
3227 echo " Making list of NOOPTFILES"
3228 for i in $NOOPTFILES ; do
3229 base=`echo $i | sed -e 's/\/.*\///g' | sed -e 's/\..*$//g'`
3230 RETVAL=$?
3231 if test "x$RETVAL" != x0 ; then
3232 echo "Error: unable to add file \"$i\" to the exceptions list"
3233 fi
3234 echo "$base.o: $base.$FS" >> $MAKEFILE
3235 printf "\t\$(FC) \$(FFLAGS) \$(NOOPTFLAGS) -c \$<\n" >> $MAKEFILE
3236 done
3237
3238 echo " Add rules for links"
3239 cat srclinks.tmp >> $MAKEFILE
3240 rm -f srclinks.tmp
3241
3242 echo " Adding makedepend marker"
3243 printf "\n\n# DO NOT DELETE\n" >> $MAKEFILE
3244
3245 printf "\n=== Done ===\n"
3246
3247 # Create special header files
3248 $BASH $TOOLSDIR/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bPACKAGES_CONFIG_H "Disabled packages:" $DISABLED_PACKAGES " " "Enabled packages:" $ENABLED_PACKAGES > $PACKAGES_DOT_H".tmp"
3249 if test ! -f $PACKAGES_DOT_H ; then
3250 mv -f $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H
3251 else
3252 cmp $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H > /dev/null 2>&1
3253 RETVAL=$?
3254 if test "x$RETVAL" = x0 ; then
3255 rm -f $PACKAGES_DOT_H".tmp"
3256 else
3257 mv -f $PACKAGES_DOT_H $PACKAGES_DOT_H".bak"
3258 mv -f $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H
3259 fi
3260 fi
3261 if test ! -f AD_CONFIG.h ; then
3262 $BASH $TOOLSDIR/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > AD_CONFIG.h
3263 fi
3264
3265 # Write the "state" for future records
3266 if test "x$DUMPSTATE" = xt ; then
3267 printf "" > genmake_state
3268 for i in $gm_state ; do
3269 t1="t2=\$$i"
3270 eval $t1
3271 echo "$i='$t2'" | sed -e 's/ */ /g' >> genmake_state
3272 done
3273 fi

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