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Revision 1.205 - (show annotations) (download)
Sun May 23 03:45:58 2010 UTC (9 years, 3 months ago) by jmc
Branch: MAIN
Changes since 1.204: +44 -34 lines
- move previous Makefile to Makefile.old
- extend pkg_depend rules to model & eesupp
- fix checking for mnc & profiles pkg (if 1rst of last in the list)

1 #! /usr/bin/env bash
2 #
3 # $Header: /u/gcmpack/MITgcm/tools/genmake2,v 1.204 2010/03/10 15:49:54 jmc Exp $
4 #
5 # Makefile generator for MITgcm UV codes
6 # created by cnh 03/98
7 # adapted by aja 06/98
8 # modified by aja 01/00
9 # rewritten in bash by eh3 08/03
10
11 # Search for particular CPP #cmds associated with packages
12 # usage: test_for_package_in_cpp_options CPP_file package_name
13 test_for_package_in_cpp_options() {
14 cpp_options=$1
15 pkg=$2
16 test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_$pkg[ ]"
17 test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_$pkg[ ]"
18 test_for_string_in_file $cpp_options "^[ ]*#define.*DISABLE_$pkg[ ]"
19 test_for_string_in_file $cpp_options "^[ ]*#undef.*DISABLE_$pkg[ ]"
20 test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_$pkg$"
21 test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_$pkg$"
22 test_for_string_in_file $cpp_options "^[ ]*#define.*DISABLE_$pkg$"
23 test_for_string_in_file $cpp_options "^[ ]*#undef.*DISABLE_$pkg$"
24 }
25
26 # Search for particular CPP #cmds associated with MPI
27 # usage: test_for_mpi_in_cpp_eeoptions CPP_file
28 test_for_mpi_in_cpp_eeoptions() {
29 cpp_options=$1
30 test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_USE_MPI[ ]"
31 test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_USE_MPI[ ]"
32 test_for_string_in_file $cpp_options "^[ ]*#define.*ALWAYS_USE_MPI[ ]"
33 test_for_string_in_file $cpp_options "^[ ]*#undef.*ALWAYS_USE_MPI[ ]"
34 test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_USE_MPI$"
35 test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_USE_MPI$"
36 test_for_string_in_file $cpp_options "^[ ]*#define.*ALWAYS_USE_MPI$"
37 test_for_string_in_file $cpp_options "^[ ]*#undef.*ALWAYS_USE_MPI$"
38 }
39
40 # Search for particular string in a file. Return 1 if detected, 0 if not
41 # usage: test_for_string_in_file file string
42 test_for_string_in_file() {
43 file=$1
44 strng=$2
45 grep -i "$strng" $file > /dev/null 2>&1
46 RETVAL=$?
47 if test "x${RETVAL}" = x0 ; then
48 printf "Error: In $file there is an illegal line: "
49 grep -i "$strng" $file
50 exit 99
51 fi
52 return 0
53 }
54
55 # Read the $ROOTDIR/pkg/pkg_groups file and expand any references to
56 # the package list.
57 expand_pkg_groups() {
58 new_packages=
59 PKG_GROUPS=$ROOTDIR"/pkg/pkg_groups"
60 if test -r $PKG_GROUPS ; then
61 cat $PKG_GROUPS | sed -e 's/#.*$//g' | sed -e 's/:/ : /g' > ./p1.tmp
62 cat ./p1.tmp | $AWK '(NF>2 && $2==":"){ print $0 }' > ./p2.tmp
63 matched=0
64 for i in $PACKAGES ; do
65 line=`grep "^ *$i" ./p2.tmp`
66 RETVAL=$?
67 if test "x$RETVAL" = x0 ; then
68 matched=1
69 replace=`echo $line | $AWK '{ $1=""; $2=""; print $0 }'`
70 echo " replacing \"$i\" with: $replace"
71 new_packages="$new_packages $replace"
72 else
73 new_packages="$new_packages $i"
74 fi
75 done
76 PACKAGES=$new_packages
77 rm -f ./p[1,2].tmp
78 return $matched
79 else
80 echo "Warning: can't read package groups definition file: $PKG_GROUPS"
81 fi
82 }
83
84 # Check for broken environments (eg. cygwin, MacOSX w/HFS+) that
85 # cannot distinguish [*.F/*.F90] from [*.f/*.f90] files.
86 check_for_broken_Ff() {
87 # Do we have defaults for $FS and/or $FS90 ?
88 tfs=f
89 tfs9=f90
90 if test "x$FS" != x ; then
91 tfs="$FS"
92 fi
93 if test "x$FS90" != x ; then
94 tfs9="$FS90"
95 fi
96
97 # First check the ability to create a *.F/.f pair.
98 cat <<EOF >> genmake_hello.F
99 program hello
100 write(*,*) 'hi'
101 stop
102 end
103 EOF
104 cp genmake_hello.F "genmake_hello."$tfs > /dev/null 2>&1
105 RETVAL=$?
106 if test "x$RETVAL" != x0 ; then
107 if test "x$FS" = x ; then
108 FS='for'
109 FS90='fr9'
110 check_for_broken_Ff
111 else
112 cat <<EOF 2>&1
113 ERROR: Your file system cannot distinguish between *.F and *.f files
114 (fails the "cp" test) and this program cannot find a suitable
115 replacement extension. Please try a different build environment or
116 contact the <MITgcm-support@mitgcm.org> list for help.
117
118 EOF
119 exit -1
120 fi
121 return
122 fi
123 rm -f genmake_hello.*
124
125 # Check the ability of ${MAKE} and ${LN} to use the current set
126 # of extensions.
127 cat <<EOF >> genmake_hello.F
128 program hello
129 write(*,*) 'hi'
130 stop
131 end
132 EOF
133 test -f $MAKEFILE && mv -f $MAKEFILE $MAKEFILE".tst"
134 cat <<EOF >> $MAKEFILE
135 .SUFFIXES:
136 .SUFFIXES: .$tfs .F
137 .F.$tfs:
138 $LN \$< \$@
139 EOF
140 $MAKE "genmake_hello."$tfs > /dev/null 2>&1
141 RETVAL=$?
142 if test "x$RETVAL" != x0 -o ! -f "genmake_hello."$tfs ; then
143 if test "x$FS" = x ; then
144 FS='for'
145 FS90='fr9'
146 check_for_broken_Ff
147 else
148 cat <<EOF 2>&1
149 ERROR: Your file system cannot distinguish between *.F and *.f files
150 (fails the "make/ln" test) and this program cannot find a suitable
151 replacement extension. Please try a different build environment or
152 contact the <MITgcm-support@mitgcm.org> list for help.
153
154 EOF
155 exit -1
156 return
157 fi
158 fi
159 rm -f genmake_hello.* $MAKEFILE
160 test -f $MAKEFILE".tst" && mv -f $MAKEFILE".tst" $MAKEFILE
161
162 # If we make it here, use the extensions
163 FS=$tfs
164 FS90=$tfs9
165 return
166 }
167
168
169 look_for_makedepend() {
170
171 # The "original" makedepend is part of the Imake system that is
172 # most often distributed with XFree86 or with an XFree86 source
173 # package. As a result, many machines (eg. generic Linux) do not
174 # have a system-default "makedepend" available. For those
175 # systems, we have two fall-back options:
176 #
177 # 1) a makedepend implementation shipped with the cyrus-imapd
178 # package: ftp://ftp.andrew.cmu.edu/pub/cyrus-mail/
179 #
180 # 2) a known-buggy xmakedpend shell script
181 #
182 # So the choices are, in order:
183 #
184 # 1) use the user-specified program
185 # 2) use a system-wide default
186 # 3) locally build and use the cyrus implementation
187 # 4) fall back to the buggy local xmakedpend script
188 #
189 if test "x${MAKEDEPEND}" = x ; then
190 which makedepend > /dev/null 2>&1
191 RV0=$?
192 test -f $MAKEFILE && mv -f $MAKEFILE $MAKEFILE".tst"
193 # echo 'MAKEFILE="'$MAKEFILE'"'
194 cat <<EOF >> $MAKEFILE
195 # THIS IS A TEST MAKEFILE GENERATED BY "genmake2"
196 #
197 # Some "makedepend" implementations will die if they cannot
198 # find a Makefile -- so this file is here to gives them an
199 # empty one to find and parse.
200 EOF
201 cat <<EOF >> genmake_tc.f
202 program test
203 write(*,*) 'test'
204 stop
205 end
206 EOF
207 makedepend genmake_tc.f > /dev/null 2>&1
208 RV1=$?
209 test -f $MAKEFILE && rm -f $MAKEFILE
210 test -f $MAKEFILE".tst" && mv -f $MAKEFILE".tst" $MAKEFILE
211 if test "x${RV0}${RV1}" = x00 ; then
212 MAKEDEPEND=makedepend
213 else
214 echo " a system-default makedepend was not found."
215
216 # Try to build the cyrus implementation
217 build_cyrus_makedepend
218 RETVAL=$?
219 if test "x$RETVAL" != x0 ; then
220 MAKEDEPEND='$(TOOLSDIR)/xmakedepend'
221 fi
222 rm -f ./genmake_cy_md
223 fi
224 else
225 # echo "MAKEDEPEND=${MAKEDEPEND}"
226 echo "${MAKEDEPEND}" | grep -i cyrus > /dev/null 2>&1
227 RETVAL=$?
228 if test x"$RETVAL" = x0 ; then
229 build_cyrus_makedepend
230 fi
231 fi
232 }
233
234
235 build_cyrus_makedepend() {
236 rm -f ./genmake_cy_md
237 (
238 cd $ROOTDIR/tools/cyrus-imapd-makedepend \
239 && ./configure > /dev/null 2>&1 \
240 && make > /dev/null 2>&1
241 if test -x ./makedepend.exe ; then
242 $LN ./makedepend.exe ./makedepend
243 fi
244 ./makedepend ifparser.c > /dev/null 2>&1 \
245 && echo "true"
246 ) > ./genmake_cy_md
247 grep true ./genmake_cy_md > /dev/null 2>&1
248 RETVAL=$?
249 rm -f ./genmake_cy_md
250 if test "x$RETVAL" = x0 ; then
251 MAKEDEPEND='$(TOOLSDIR)/cyrus-imapd-makedepend/makedepend'
252 return 0
253 else
254 echo "WARNING: unable to build cyrus-imapd-makedepend"
255 return 1
256 fi
257 }
258
259
260 build_embed_encode()
261 {
262 printf " building the embed-encode utility... "
263 if test ! -e "$ROOTDIR/tools/embed_encode/encode_files" ; then
264 if test ! -d "$ROOTDIR/tools/embed_encode" ; then
265 echo
266 echo " Error: can't locate \"$ROOTDIR/tools/embed_encode\""
267 echo
268 EMBED_SRC=f
269 return 1
270 fi
271 clist="cc gcc c89 $CC"
272 for ic in $clist ; do
273 comm="$ic -o encode_files encode_files.c"
274 ( cd $ROOTDIR/tools/embed_encode && $comm ) > /dev/null 2>&1
275 RETVAL=$?
276 if test "x$RETVAL" = x0 ; then
277 echo "OK"
278 DEFINES="$DEFINES -DHAVE_EMBED_SRC"
279 return 0
280 fi
281 done
282 echo
283 echo " Error: unable to build $ROOTDIR/embed_encode/encode_files"
284 echo " so it has been disabled"
285 echo
286 EMBED_SRC=f
287 return 1
288 fi
289 echo "OK"
290 DEFINES="$DEFINES -DHAVE_EMBED_SRC"
291 }
292
293
294 # Guess possible config options for this host
295 find_possible_configs() {
296
297 tmp1=`uname`"_"`uname -m`
298 tmp2=`echo $tmp1 | sed -e 'y/ABCDEFGHIJKLMNOPQRSTUVWXYZ/abcdefghijklmnopqrstuvwxyz/'`
299 tmp3=`echo $tmp2 | sed -e 's/power macintosh/ppc/'`
300 tmp1=`echo $tmp3 | sed -e 's|x86_64|amd64|'`
301 tmp2=`echo $tmp1 | sed -e 's/i[3-6]86/ia32/' | sed -e 's/athlon/ia32/'`
302 tmp3=`echo $tmp2 | sed -e 's/cray sv1/craysv1/'`
303 PLATFORM=$tmp3
304 echo $PLATFORM | grep cygwin > /dev/null 2>&1 && PLATFORM=cygwin_ia32
305 OFLIST=`(cd $ROOTDIR/tools/build_options; ls | grep "^$PLATFORM")`
306 echo " The platform appears to be: $PLATFORM"
307
308 echo "test" > test
309 ln -s ./test link
310 RETVAL=$?
311 if test "x${RETVAL}" = x0 ; then
312 LN="ln -s"
313 else
314 echo "Error: \"ln -s\" does not appear to work on this system!"
315 echo " For help, please contact <MITgcm-support@mitgcm.org>."
316 exit 1
317 fi
318 rm -f test link
319
320 if test "x$CPP" = x ; then
321 CPP="cpp -traditional -P"
322 fi
323
324 look_for_makedepend
325
326 #================================================================
327 # look for possible C compilers
328 tmp="$MITGCM_CC $CC gcc c89 cc c99 mpicc icc"
329 p_CC=
330 for c in $tmp ; do
331 rm -f ./genmake_hello.c ./genmake_hello
332 cat >> genmake_hello.c << EOF
333 #include <stdio.h>
334 int main(int argc, char **argv) {
335 printf("Hello!\n");
336 return 0;
337 }
338 EOF
339 $c -o genmake_hello genmake_hello.c > /dev/null 2>&1
340 RETVAL=$?
341 if test "x${RETVAL}" = x0 ; then
342 p_CC="$p_CC $c"
343 fi
344 done
345 rm -f ./genmake_hello.c ./genmake_hello
346 if test "x${p_CC}" = x ; then
347 cat 1>&2 <<EOF
348
349 Error: No C compilers were found in your path. Please specify one using:
350
351 1) an "optfile" on (eg. "-optfile=path/to/OPTFILE"),
352 2) the CC or MITGCM_CC environment variables.
353
354 EOF
355 exit 1
356 else
357 echo " The possible C compilers found in your path are:"
358 echo " "$p_CC
359 if test "x$CC" = x ; then
360 CC=`echo $p_CC | $AWK '{print $1}'`
361 echo " Setting C compiler to: "$CC
362 fi
363 fi
364
365 #================================================================
366 # look for possible FORTRAN compilers
367 tmp="$MITGCM_FC $FC efc g77 f77 pgf77 pgf95 ifc ifort f90 f95 mpif77 mpf77 mpxlf95 gfortran g95"
368 p_FC=
369 for c in $tmp ; do
370 rm -f ./hello.f ./hello
371 cat >> hello.f <<EOF
372 program hello
373 do i=1,3
374 print *, 'hello world : ', i
375 enddo
376 end
377 EOF
378 $c -o hello hello.f > /dev/null 2>&1
379 RETVAL=$?
380 if test "x${RETVAL}" = x0 ; then
381 p_FC="$p_FC $c"
382 fi
383 done
384 rm -f ./hello.f ./hello
385 if test "x${p_FC}" = x ; then
386 cat 1>&2 <<EOF
387
388 Error: No Fortran compilers were found in your path. Please specify one using:
389
390 1) an "optfile" on (eg. "-optfile=path/to/OPTFILE"),
391 2) a command-line option (eg. "-fc NAME"), or
392 3) the FC or MITGCM_FC environment variables.
393
394 EOF
395 exit 1
396 else
397 echo " The possible FORTRAN compilers found in your path are:"
398 echo " "$p_FC
399 fi
400
401 # Use the first of the compilers found in the current PATH
402 # that has a correctly-named optfile
403 if test "x$OPTFILE" = x -a "x$FC" = x ; then
404 for i in $p_FC ; do
405 OPTFILE=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$i
406 if test -r $OPTFILE ; then
407 echo " Setting OPTFILE to: "$OPTFILE
408 break
409 fi
410 done
411 fi
412
413 if test "x$OPTFILE" = x ; then
414 OPTFILE=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$FC
415 if test ! -r $OPTFILE ; then
416 echo " I looked for the file "$OPTFILE" but did not find it"
417 fi
418 fi
419 # echo " The options file: $p_OF"
420 # echo " appears to match so we'll use it."
421 # for i in $p_FC ; do
422 #p_OF=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$i
423 #if test -r $p_OF ; then
424 # OPTFILE=$p_OF
425 # echo " The options file: $p_OF"
426 # echo " appears to match so we'll use it."
427 # break
428 #fi
429 # done
430 if test "x$OPTFILE" = x ; then
431 cat 1>&2 <<EOF
432
433 Error: No options file was found in: $ROOTDIR/tools/build_options/
434 that matches this platform ("$PLATFORM") and the compilers found in
435 your path. Please specify an "optfile" using:
436
437 1) the command line (eg. "-optfile=path/to/OPTFILE"), or
438 2) the MITGCM_OF environment variable.
439
440 If you need help, please contact the developers at <MITgcm-support@mitgcm.org>.
441
442 EOF
443 exit 1
444 fi
445
446 # # look for possible MPI libraries
447 # mpi_libs=
448 # mpi_fort=`which mpif77 2>/dev/null`
449 # RETVAL=$?
450 # if test "x${RETVAL}" = x0 ; then
451 # cat >>test.f <<EOF
452 # PROGRAM HELLO
453 # DO 10, I=1,10
454 # PRINT *,'Hello World'
455 # 10 CONTINUE
456 # STOP
457 # END
458 # EOF
459 # eval "$mpi_fort -showme test.f > out"
460 # RETVAL=$?
461 # if test "x${RETVAL}" = x0 ; then
462 # a=`cat out`
463 # for i in $a ; do
464 # case $i in
465 # -*)
466 # mpi_libs="$mpi_libs $i" ;;
467 # esac
468 # done
469 # echo "The MPI libs appear to be:"
470 # echo " "$mpi_libs
471 # fi
472 # rm -f test.f out
473 # fi
474
475 }
476
477 # Parse the package dependency information
478 get_pdepend_list() {
479
480 # strip the comments and then convert the dependency file into
481 # two arrays: PNAME, DNAME
482 cat $1 | sed -e 's/#.*$//g' \
483 | $AWK 'BEGIN{nn=-1;} (NF>0){ for(i=2;i<=NF;i++){nn++; print "PNAME_"nn"="$1"\nDNAME_"nn"="$i}} END{print "nname="nn}' \
484 > ./.pd_tmp
485 RETVAL=$?
486 if test ! "x${RETVAL}" = x0 ; then
487 echo "Error: unable to parse package dependencies -- please check PDEPEND=\"$1\""
488 exit 1
489 fi
490 . ./.pd_tmp
491 rm -f ./.pd_tmp
492
493 }
494
495
496 # Explain usage
497 usage() {
498 cat <<EOF
499
500 Usage: "$0" [OPTIONS]
501 where [OPTIONS] can be:
502
503 -help | --help | -h | --h
504 Print this help message and exit.
505
506 -adoptfile NAME | --adoptfile NAME | -adof NAME | --adof NAME
507 -adoptfile=NAME | --adoptfile=NAME | -adof=NAME | --adof=NAME
508 Use "NAME" as the adoptfile. By default, the file at
509 "tools/adjoint_options/adjoint_default" will be used.
510
511 -nooptfile | --nooptfile
512 -optfile NAME | --optfile NAME | -of NAME | --of NAME
513 -optfile=NAME | --optfile=NAME | -of=NAME | --of=NAME
514 Use "NAME" as the optfile. By default, an attempt will be
515 made to find an appropriate "standard" optfile in the
516 tools/build_options/ directory.
517
518 -pdepend NAME | --pdepend NAME
519 -pdepend=NAME | --pdepend=NAME
520 Get package dependency information from "NAME".
521
522 -pdefault NAME | --pdefault NAME
523 -pdefault=NAME | --pdefault=NAME
524 Get the default package list from "NAME".
525
526 -bash NAME
527 Explicitly specify the Bourne or BASH shell to use
528
529 -make NAME | -m NAME
530 --make=NAME | -m=NAME
531 Use "NAME" for the MAKE program. The default is "make" but
532 many platforms, "gmake" is the preferred choice.
533
534 -makefile NAME | -mf NAME
535 --makefile=NAME | -mf=NAME
536 Call the makefile "NAME". The default is "Makefile".
537
538 -makedepend NAME | -md NAME
539 --makedepend=NAME | -md=NAME
540 Use "NAME" for the MAKEDEPEND program.
541
542 -rootdir NAME | --rootdir NAME | -rd NAME | --rd NAME
543 -rootdir=NAME | --rootdir=NAME | -rd=NAME | --rd=NAME
544 Specify the location of the MITgcm ROOTDIR as "NAME".
545 By default, genamke will try to find the location by
546 looking in parent directories (up to the 5th parent).
547
548 -mods NAME | --mods NAME | -mo NAME | --mo NAME
549 -mods=NAME | --mods=NAME | -mo=NAME | --mo=NAME
550 Here, "NAME" specifies a list of directories that are
551 used for additional source code. Files found in the
552 "mods list" are given preference over files of the same
553 name found elsewhere.
554
555 -disable NAME | --disable NAME
556 -disable=NAME | --disable=NAME
557 Here "NAME" specifies a list of packages that we don't
558 want to use. If this violates package dependencies,
559 genamke will exit with an error message.
560
561 -enable NAME | --enable NAME
562 -enable=NAME | --enable=NAME
563 Here "NAME" specifies a list of packages that we wish
564 to specifically enable. If this violates package
565 dependencies, genamke will exit with an error message.
566
567 -standarddirs NAME | --standarddirs NAME
568 -standarddirs=NAME | --standarddirs=NAME
569 Here, "NAME" specifies a list of directories to be
570 used as the "standard" code.
571
572 -fortran NAME | --fortran NAME | -fc NAME | --fc NAME
573 -fc=NAME | --fc=NAME
574 Use "NAME" as the fortran compiler. By default, genmake
575 will search for a working compiler by trying a list of
576 "usual suspects" such as g77, f77, etc.
577
578 -cc NAME | --cc NAME | -cc=NAME | --cc=NAME
579 Use "NAME" as the C compiler. By default, genmake
580 will search for a working compiler by trying a list of
581 "usual suspects" such as gcc, c89, cc, etc.
582
583 -[no]ieee | --[no]ieee
584 Do or don't use IEEE numerics. Note that this option
585 *only* works if it is supported by the OPTFILE that
586 is being used.
587
588 -use_real4 | -use_r4 | -ur4 | --use_real4 | --use_r4 | --ur4
589 Use "real*4" type for _RS variable (#undef REAL4_IS_SLOW)
590 *only* works if CPP_EEOPTIONS.h allows this.
591
592 -ignoretime | -ignore_time | --ignoretime | --ignore_time
593 Ignore all the "wall clock" routines entirely. This will
594 not in any way hurt the model results -- it simply means
595 that the code that checks how long the model spends in
596 various routines will give junk values.
597
598 -ts | --ts
599 Produce timing information per timestep
600 -papis | --papis
601 Produce summary MFlop/s (and IPC) with PAPI per timestep
602 -pcls | --pcls
603 Produce summary MFlop/s etc. with PCL per timestep
604 -foolad | --foolad
605 Fool the AD code generator
606 -papi | --papi
607 Performance analysis with PAPI
608 -pcl | --pcl
609 Performance analysis with PCL
610 -hpmt | --hpmt
611 Performance analysis with the HPM Toolkit
612
613 -gsl | --gsl
614 Use GSL to control floating point rounding and precision
615 -devel | --devel
616 Add additional warning and debugging flags for development
617
618 -mpi | --mpi
619 Include MPI header files and link to MPI libraries
620 -mpi=PATH | --mpi=PATH
621 Include MPI header files and link to MPI libraries using MPI_ROOT
622 set to PATH. i.e. Include files from \$PATH/include, link to libraries
623 from \$PATH/lib and use binaries from \$PATH/bin.
624
625 -omp | --omp
626 Activate OpenMP code + use Compiler option OMPFLAG
627 -omp=OMPFLAG | --omp=OMPFLAG
628 Activate OpenMP code + use Compiler option OMPFLAG
629
630 -es | --es | -embed-source | --embed-source
631 Embed a tarball containing the full source code
632 (including the Makefile, etc.) used to build the
633 executable [off by default]
634
635 While it is most often a single word, the "NAME" variables specified
636 above can in many cases be a space-delimited string such as:
637
638 --enable pkg1 --enable 'pkg1 pkg2' --enable 'pkg1 pkg2 pkg3'
639 -mods=dir1 -mods='dir1' -mods='dir1 dir2 dir3'
640 -foptim='-Mvect=cachesize:512000,transform -xtypemap=real:64,double:64,integer:32'
641
642 which, depending upon your shell, may need to be single-quoted.
643
644 For more detailed genmake documentation, please see:
645
646 http://mitgcm.org/public/devel_HOWTO/
647
648 EOF
649
650 exit 1
651 }
652
653 # Build a CPP macro to automate calling C routines from FORTRAN
654 get_fortran_c_namemangling() {
655
656 #echo "FC_NAMEMANGLE = \"$FC_NAMEMANGLE\""
657 if test ! "x$FC_NAMEMANGLE" = x ; then
658 return 0
659 fi
660
661 default_nm="#define FC_NAMEMANGLE(X) X ## _"
662
663 cat > genmake_test.c <<EOF
664 void tcall( char * string ) { tsub( string ); }
665 EOF
666 $MAKE genmake_test.o >> genmake_warnings 2>&1
667 RETVAL=$?
668 if test "x$RETVAL" != x0 ; then
669 FC_NAMEMANGLE=$default_nm
670 cat <<EOF>> genmake_errors
671
672 WARNING: C test compile fails
673 WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
674 WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here
675 EOF
676 return 1
677 fi
678 c_tcall=`nm genmake_test.o 2>/dev/null | grep 'T ' | grep tcall | cut -d ' ' -f 3`
679 RETVAL=$?
680 if test "x$RETVAL" != x0 ; then
681 FC_NAMEMANGLE=$default_nm
682 cat <<EOF>> genmake_warnings
683
684 WARNING: The "nm" command failed.
685 WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
686 WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here
687 EOF
688 return 1
689 fi
690 cat > genmake_tcomp.$FS <<EOF
691 subroutine tcall( string )
692 character*(*) string
693 call tsub( string )
694 end
695 EOF
696 $FC $FFLAGS -c genmake_tcomp.$FS >> genmake_warnings 2>&1
697 RETVAL=$?
698 if test "x$RETVAL" != x0 ; then
699 FC_NAMEMANGLE=$default_nm
700 cat <<EOF>> genmake_warnings
701
702 WARNING: FORTRAN test compile fails -- please see "genmake_errors"
703 WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
704 WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here.
705 EOF
706 return 1
707 fi
708 f_tcall=`nm genmake_tcomp.o 2>/dev/null | grep 'T ' | grep tcall | cut -d ' ' -f 3`
709 RETVAL=$?
710 if test "x$RETVAL" != x0 ; then
711 FC_NAMEMANGLE=$default_nm
712 cat <<EOF>> genmake_warnings
713
714 WARNING: The "nm" command failed.
715 WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
716 WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here.
717 EOF
718 return 1
719 fi
720
721 c_a=`echo $c_tcall | sed -e 's|tcall|Y Y|' | cut -d ' ' -f 1 | sed -e 's|Y||'`
722 f_a=`echo $f_tcall | sed -e 's|tcall|Y Y|' | cut -d ' ' -f 1 | sed -e 's|Y||'`
723 c_b=`echo $c_tcall | sed -e 's|tcall|Y Y|' | cut -d ' ' -f 2 | sed -e 's|Y||'`
724 f_b=`echo $f_tcall | sed -e 's|tcall|Y Y|' | cut -d ' ' -f 2 | sed -e 's|Y||'`
725
726 nmangle="X"
727 if test "x$c_a" != "x$f_a" ; then
728 comm="echo x$f_a | sed -e 's|x$c_a||'"
729 a=`eval $comm`
730 nmangle="$a ## $nmangle"
731 fi
732 if test "x$c_b" != "x$f_b" ; then
733 comm="echo x$f_b | sed -e 's|x$c_b||'"
734 b=`eval $comm`
735 nmangle="$nmangle ## $b"
736 fi
737
738 FC_NAMEMANGLE="#define FC_NAMEMANGLE(X) $nmangle"
739
740 # cleanup the testing files
741 rm -f genmake_tcomp.* genmake_test.*
742 }
743
744
745 check_HAVE_CLOC() {
746 get_fortran_c_namemangling
747 cat <<EOF > genmake_tc_1.c
748 $FC_NAMEMANGLE
749 #include <stdio.h>
750 #include <stdlib.h>
751 #include <unistd.h>
752 #include <assert.h>
753 #include <sys/time.h>
754 void FC_NAMEMANGLE(cloc) ( double *curtim )
755 {
756 struct timeval tv1;
757 gettimeofday(&tv1 , (void *)NULL );
758 *curtim = (double)((tv1.tv_usec)+(tv1.tv_sec)*1.E6);
759 *curtim = *curtim/1.E6;
760 }
761 EOF
762 COMM="$CC $CFLAGS -c genmake_tc_1.c"
763 echo $COMM >> genmake_warnings
764 $COMM >> genmake_warnings 2>&1
765 RET_C=$?
766 cat <<EOF > genmake_tc_2.$FS
767 program hello
768 REAL*8 wtime
769 external cloc
770 call cloc(wtime)
771 print *," HELLO WORLD", wtime
772 end
773 EOF
774 COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"
775 echo $COMM >> genmake_warnings
776 $COMM >> genmake_warnings 2>&1
777 RET_F=$?
778 test -x ./genmake_tc && ./genmake_tc >> genmake_warnings 2>&1
779 RETVAL=$?
780 if test "x$RETVAL" = x0 ; then
781 HAVE_CLOC=t
782 DEFINES="$DEFINES -DHAVE_CLOC"
783 fi
784 rm -f genmake_tc*
785 }
786
787
788 check_HAVE_SIGREG() {
789 if test ! "x$HAVE_SIGREG" = x ; then
790 return
791 fi
792 get_fortran_c_namemangling
793 cat <<EOF > genmake_tc_1.c
794 $FC_NAMEMANGLE
795 #include <stdlib.h>
796 #include <stdio.h>
797 #include <signal.h>
798 #include <errno.h>
799 #include <ucontext.h>
800
801 int * ip;
802
803 static void killhandler(
804 unsigned int sn, siginfo_t si, struct ucontext *sc )
805 {
806 *ip = *ip + 1;
807 return;
808 }
809
810 void FC_NAMEMANGLE(sigreg) (int * aip)
811 {
812 struct sigaction s;
813 ip = aip;
814 s.sa_flags = SA_SIGINFO;
815 s.sa_sigaction = (void *)killhandler;
816 if(sigaction (SIGTERM,&s,(struct sigaction *)NULL)) {
817 printf("Sigaction returned error = %d\n", errno);
818 exit(0);
819 }
820 return;
821 }
822 EOF
823 COMM="$CC $CFLAGS -c genmake_tc_1.c"
824 echo $COMM >> genmake_warnings
825 $COMM >> genmake_warnings 2>&1
826 RET_C=$?
827 cat <<EOF > genmake_tc_2.$FS
828 program hello
829 integer anint
830 common /iv/ anint
831 external sigreg
832 call sigreg(anint)
833 end
834 EOF
835 echo >> genmake_warnings
836 echo "running: check_HAVE_SIGREG()" >> genmake_warnings
837 cat genmake_tc_2.$FS >> genmake_warnings
838 COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"
839 echo $COMM >> genmake_warnings
840 $COMM >> genmake_warnings 2>&1
841 RETVAL=$?
842 if test "x$RETVAL" = x0 ; then
843 HAVE_SIGREG=t
844 DEFINES="$DEFINES -DHAVE_SIGREG"
845 fi
846 rm -f genmake_tc*
847 }
848
849
850 check_HAVE_SETRLSTK() {
851 if test "x$HAVE_SETRLSTK" = xt ; then
852 DEFINES="$DEFINES -DHAVE_SETRLSTK"
853 return
854 fi
855 if test ! "x$HAVE_SETRLSTK" = x ; then
856 return
857 fi
858 get_fortran_c_namemangling
859 cat <<EOF > genmake_tc_1.c
860 $FC_NAMEMANGLE
861 #include <sys/time.h>
862 #include <sys/resource.h>
863 #include <unistd.h>
864 void FC_NAMEMANGLE(setrlstk) ()
865 {
866 struct rlimit rls;
867 rls.rlim_cur = RLIM_INFINITY;
868 rls.rlim_max = RLIM_INFINITY;
869 setrlimit(RLIMIT_STACK, &rls);
870 return;
871 }
872 EOF
873 COMM="$CC $CFLAGS -c genmake_tc_1.c"
874 echo $COMM >> genmake_warnings
875 $COMM >> genmake_warnings 2>&1
876 RET_C=$?
877 cat <<EOF > genmake_tc_2.$FS
878 program hello
879 external setrlstk
880 call setrlstk()
881 end
882 EOF
883 echo >> genmake_warnings
884 echo "running: check_HAVE_SETRLSTK()" >> genmake_warnings
885 cat genmake_tc_2.$FS >> genmake_warnings
886 COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"
887 echo $COMM >> genmake_warnings
888 $COMM >> genmake_warnings 2>&1
889 RETVAL=$?
890 if test "x$RETVAL" = x0 ; then
891 HAVE_SETRLSTK=t
892 DEFINES="$DEFINES -DHAVE_SETRLSTK"
893 fi
894 rm -f genmake_tc*
895 }
896
897
898 check_HAVE_STAT() {
899 get_fortran_c_namemangling
900 cat <<EOF > genmake_tc_1.c
901 $FC_NAMEMANGLE
902 #include <stdio.h>
903 #include <stdlib.h>
904 #include <unistd.h>
905 #include <sys/stat.h>
906 #include <sys/types.h>
907 void FC_NAMEMANGLE(tfsize) ( int *nbyte )
908 {
909 char name[512];
910 struct stat astat;
911
912 name[0] = 'a'; name[1] = '\0';
913 if (! stat(name, &astat))
914 *nbyte = (int)(astat.st_size);
915 else
916 *nbyte = -1;
917 }
918 EOF
919 COMM="$CC $CFLAGS -c genmake_tc_1.c"
920 echo $COMM >> genmake_warnings
921 $COMM >> genmake_tc.log 2>&1
922 RET_C=$?
923 cat <<EOF > genmake_tc_2.$FS
924 program hello
925 integer nbyte
926 call tfsize(nbyte)
927 print *," HELLO WORLD", nbyte
928 end
929 EOF
930 echo >> genmake_warnings
931 echo "running: check_HAVE_STAT()" >> genmake_warnings
932 cat genmake_tc_2.$FS >> genmake_warnings
933 COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"
934 echo $COMM >> genmake_warnings
935 $COMM >> genmake_tc.log 2>&1
936 RETVAL=$?
937 if test "x$RETVAL" = x0 ; then
938 HAVE_STAT=t
939 DEFINES="$DEFINES -DHAVE_STAT"
940 fi
941 rm -f genmake_tc*
942 }
943
944
945 check_netcdf_libs() {
946 if test ! "x$SKIP_NETCDF_CHECK" = x ; then
947 return
948 fi
949 echo >> genmake_warnings
950 echo "running: check_netcdf_libs()" >> genmake_warnings
951 cat <<EOF > genmake_tnc.F
952 program fgennc
953 #include "netcdf.inc"
954 EOF
955 if test ! "x$MPI" = x ; then
956 echo '#include "mpif.h"' >> genmake_tnc.F
957 fi
958 cat <<EOF >> genmake_tnc.F
959 integer iret, ncid, xid
960 iret = nf_create('genmake_tnc.nc', NF_CLOBBER, ncid)
961 IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret)
962 iret = nf_def_dim(ncid, 'X', 11, xid)
963 IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret)
964 iret = nf_close(ncid)
965 IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret)
966 end
967 EOF
968 echo "=== genmake_tnc.F ===" > genmake_tnc.log
969 cat genmake_tnc.F >> genmake_tnc.log
970 echo "=== genmake_tnc.F ===" >> genmake_tnc.log
971 RET_CPP=f
972 COMM="cat genmake_tnc.F | $CPP $DEFINES $INCLUDES"
973 echo "$COMM" >> genmake_tnc.log
974 eval $COMM > genmake_tnc.$FS 2>/dev/null && RET_CPP=t
975 if test "x$RET_CPP" = xf ; then
976 echo " WARNING: CPP failed to pre-process the netcdf test." \
977 >> genmake_tnc.log
978 echo " Please check that \$INCLUDES is properly set." \
979 >> genmake_tnc.log
980 fi
981 echo "$FC $FFLAGS $FOPTIM -c genmake_tnc.$FS \ " >> genmake_tnc.log
982 echo " && $LINK $FFLAGS $FOPTIM -o genmake_tnc.o $LIBS" >> genmake_tnc.log
983 $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS >> genmake_tnc.log 2>&1 \
984 && $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS >> genmake_tnc.log 2>&1
985 RET_COMPILE=$?
986 cat genmake_tnc.log >> genmake_warnings
987
988 #EH3 Remove test program execution for machines that either disallow
989 #EH3 execution or cannot support it (eg. cross-compilers)
990 #EH3
991 #EH3 test -x ./genmake_tnc && ./genmake_tnc >> genmake_tnc.log 2>&1
992 #EH3 RETVAL=$?
993 #EH3 if test "x$RET_COMPILE" = x0 -a "x$RETVAL" = x0 ; then
994
995 if test "x$RET_COMPILE" = x0 ; then
996 HAVE_NETCDF=t
997 else
998 # try again with "-lnetcdf" added to the libs
999 echo "try again with added '-lnetcdf'" > genmake_tnc.log
1000 echo "cat genmake_tnc.F | $CPP $DEFINES $INCLUDES > genmake_tnc.$FS \ " >> genmake_tnc.log
1001 echo " && $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS \ " >> genmake_tnc.log
1002 echo " && $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdf" >> genmake_tnc.log
1003 cat genmake_tnc.F | $CPP $DEFINES $INCLUDES > genmake_tnc.$FS 2>/dev/null \
1004 && $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS >> genmake_tnc.log 2>&1 \
1005 && $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdf >> genmake_tnc.log 2>&1
1006 RET_COMPILE=$?
1007 cat genmake_tnc.log >> genmake_warnings
1008 if test "x$RET_COMPILE" = x0 ; then
1009 LIBS="$LIBS -lnetcdf"
1010 HAVE_NETCDF=t
1011 else
1012 # try again with "-lnetcdff" added to the libs
1013 echo "try again with added '-lnetcdff -lnetcdf'" > genmake_tnc.log
1014 echo "cat genmake_tnc.F | $CPP $DEFINES $INCLUDES > genmake_tnc.$FS \ " >> genmake_tnc.log
1015 echo " && $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS \ " >> genmake_tnc.log
1016 echo " && $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdf" >> genmake_tnc.log
1017 cat genmake_tnc.F | $CPP $DEFINES $INCLUDES > genmake_tnc.$FS 2>/dev/null \
1018 && $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS >> genmake_tnc.log 2>&1 \
1019 && $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdff -lnetcdf >> genmake_tnc.log 2>&1
1020 RET_COMPILE=$?
1021 cat genmake_tnc.log >> genmake_warnings
1022 if test "x$RET_COMPILE" = x0 ; then
1023 LIBS="$LIBS -lnetcdff -lnetcdf"
1024 HAVE_NETCDF=t
1025 fi
1026 fi
1027 fi
1028 rm -f genmake_tnc*
1029 }
1030
1031
1032
1033 ###############################################################################
1034 # Sequential part of script starts here
1035 ###############################################################################
1036
1037 # Set defaults here
1038 COMMANDL="$0 $@"
1039
1040 PLATFORM=
1041 LN=
1042 S64=
1043 KPP=
1044 #FC=
1045 #CC=gcc
1046 #CPP=
1047 LINK=
1048 DEFINES=
1049 PACKAGES=
1050 ENABLE=
1051 DISABLE=
1052 # MAKEFILE=
1053 # MAKEDEPEND=
1054 PDEPEND=
1055 DUMPSTATE=t
1056 PDEFAULT=
1057 OPTFILE=
1058 INCLUDES="-I. $INCLUDES"
1059 FFLAGS=
1060 FOPTIM=
1061 FEXTRAFLAGS=
1062 USE_EXTENDED_SRC=
1063 EXTENDED_SRC_FLAG=
1064 CFLAGS=
1065 KFLAGS1=
1066 KFLAGS2=
1067 #LDADD=
1068 LIBS=
1069 KPPFILES=
1070 NOOPTFILES=
1071 NOOPTFLAGS=
1072 MPI=
1073 MPIPATH=
1074 OMP=
1075 OMPFLAG=
1076 USE_R4=
1077 TS=
1078 PAPIS=
1079 PCLS=
1080 FOOLAD=
1081 PAPI=
1082 PCL=
1083 HPMT=
1084 GSL=
1085 DEVEL=
1086 HAVE_TEST_L=
1087
1088 # DEFINES checked by test compilation or command-line
1089 HAVE_SYSTEM=
1090 HAVE_FDATE=
1091 FC_NAMEMANGLE=
1092 HAVE_CLOC=
1093 # HAVE_SETRLSTK=
1094 HAVE_STAT=
1095 HAVE_NETCDF=
1096 HAVE_ETIME=
1097 IGNORE_TIME=
1098
1099 MODS=
1100 TOOLSDIR=
1101 SOURCEDIRS=
1102 INCLUDEDIRS=
1103 STANDARDDIRS="USE_THE_DEFAULT"
1104
1105 G2ARGS=
1106 BASH=
1107 PWD=`pwd`
1108 test "x$MAKE" = x && MAKE=make
1109 test "x$AWK" = x && AWK=awk
1110 EMBED_SRC=
1111 THISHOST=`hostname`
1112 THISCWD=`pwd`
1113 THISDATE=`date`
1114 THISUSER=`echo $USER`
1115 THISVER=
1116 MACHINE=`uname -a`
1117 EXECUTABLE=
1118 EXEHOOK=
1119 EXEDIR=
1120 PACKAGES_CONF=
1121 IEEE=
1122 if test "x$MITGCM_IEEE" != x ; then
1123 IEEE=$MITGCM_IEEE
1124 fi
1125 FS=
1126 FS90=
1127
1128 AUTODIFF_PKG_USED=f
1129 AD_OPTFILE=
1130 TAF=
1131 AD_TAF_FLAGS=
1132 FTL_TAF_FLAGS=
1133 SVD_TAF_FLAGS=
1134 TAF_EXTRA=
1135 TAMC=
1136 AD_TAMC_FLAGS=
1137 FTL_TAF_FLAGS=
1138 SVD_TAMC_FLAGS=
1139 TAMC_EXTRA=
1140
1141
1142 # The following state can be set directly by command-line switches
1143 gm_s1="OPTFILE PDEPEND PDEFAULT MAKEFILE PLATFORM ROOTDIR MODS DISABLE ENABLE"
1144 gm_s2="FC IEEE USE_R4 TS PAPIS PCLS PAPI PCL HPMT GSL DEVEL MPI OMP DUMPSTATE STANDARDDIRS"
1145
1146 # The following state is not directly set by command-line switches
1147 gm_s3="LN S64 KPP LINK PACKAGES MAKEDEPEND PDEPEND PDEFAULT INCLUDES FFLAGS FOPTIM FEXTRAFLAGS"
1148 gm_s4="CFLAGS KFLAGS1 KFLAGS2 LIBS KPPFILES NOOPTFILES NOOPTFLAGS"
1149 gm_s5="TOOLSDIR SOURCEDIRS INCLUDEDIRS PWD MAKE THISHOST THISUSER THISDATE THISVER MACHINE"
1150 gm_s6="EXECUTABLE EXEHOOK EXEDIR PACKAGES_CONF"
1151 gm_s7="HAVE_SYSTEM HAVE_FDATE FC_NAMEMANGLE HAVE_ETIME"
1152
1153 # The following are all related to adjoint/tangent-linear stuff
1154 gm_s10="AUTODIFF_PKG_USED AD_OPTFILE TAMC TAF AD_TAMC_FLAGS AD_TAF_FLAGS"
1155 gm_s11="FTL_TAMC_FLAGS FTL_TAF_FLAGS SVD_TAMC_FLAGS SVD_TAF_FLAGS"
1156 gm_s12="TAF_EXTRA TAMC_EXTRA"
1157
1158 gm_state="COMMANDL $gm_s1 $gm_s2 $gm_s3 $gm_s4 $gm_s5 $gm_s6 $gm_s7"
1159 gm_state="$gm_state $gm_s10 $gm_s11 $gm_s12"
1160
1161 cat <<EOF
1162
1163 GENMAKE :
1164
1165 A program for GENerating MAKEfiles for the MITgcm project. For a
1166 quick list of options, use "genmake -h" or for more detail see:
1167
1168 http://mitgcm.org/devel_HOWTO/
1169
1170 EOF
1171
1172 echo "=== Processing options files and arguments ==="
1173 gm_local="genmake_local"
1174 printf " getting local config information: "
1175 if test -f $gm_local ; then
1176 echo "using $gm_local"
1177 . $gm_local
1178 # echo "DISABLE=$DISABLE"
1179 # echo "ENABLE=$ENABLE"
1180 else
1181 echo "none found"
1182 fi
1183
1184 #echo "$0::$1:$2:$3:$4:$5:$6:$7:"
1185 #parse_options
1186 ac_prev=
1187 for ac_option in "$@" ; do
1188
1189 G2ARGS="$G2ARGS \"$ac_option\""
1190
1191 # If the previous option needs an argument, assign it.
1192 if test -n "$ac_prev"; then
1193 eval "$ac_prev=\$ac_option"
1194 ac_prev=
1195 continue
1196 fi
1197
1198 ac_optarg=`expr "x$ac_option" : 'x[^=]*=\(.*\)'`
1199
1200 case $ac_option in
1201
1202 -help | --help | -h | --h)
1203 usage ;;
1204
1205 -nooptfile | --nooptfile)
1206 OPTFILE="NONE" ;;
1207 -optfile | --optfile | -of | --of)
1208 ac_prev=OPTFILE ;;
1209 -optfile=* | --optfile=* | -of=* | --of=*)
1210 OPTFILE=$ac_optarg ;;
1211
1212 -adoptfile | --adoptfile | -adof | --adof)
1213 ac_prev=AD_OPTFILE ;;
1214 -adoptfile=* | --adoptfile=* | -adof=* | --adof=*)
1215 AD_OPTFILE=$ac_optarg ;;
1216
1217 -pdepend | --pdepend)
1218 ac_prev=PDEPEND ;;
1219 -pdepend=* | --pdepend=*)
1220 PDEPEND=$ac_optarg ;;
1221
1222 -pdefault | --pdefault)
1223 ac_prev=PDEFAULT ;;
1224 -pdefault=* | --pdefault=*)
1225 PDEFAULT=$ac_optarg ;;
1226
1227 -make | --make | -m | --m)
1228 ac_prev=MAKE ;;
1229 -make=* | --make=* | -m=* | --m=*)
1230 MAKE=$ac_optarg ;;
1231
1232 -bash | --bash)
1233 ac_prev=BASH ;;
1234 -bash=* | --bash=*)
1235 BASH=$ac_optarg ;;
1236
1237 -makedepend | --makedepend | -md | --md)
1238 ac_prev=MAKEDEPEND ;;
1239 -makedepend=* | --makedepend=* | -md=* | --md=*)
1240 MAKEDEPEND=$ac_optarg ;;
1241
1242 -makefile | --makefile | -ma | --ma)
1243 ac_prev=MAKEFILE ;;
1244 -makefile=* | --makefile=* | -ma=* | --ma=*)
1245 MAKEFILE=$ac_optarg ;;
1246
1247 -platform | --platform | -pl | --pl | -platform=* | --platform=* | -pl=* | --pl=*)
1248 echo "ERROR: The platform option has been removed. Please specify"
1249 echo " the build options using the \"optfile\" mechanism."
1250 echo
1251 usage
1252 ;;
1253
1254 -rootdir | --rootdir | -rd | --rd)
1255 ac_prev=ROOTDIR ;;
1256 -rootdir=* | --rootdir=* | -rd=* | --rd=*)
1257 ROOTDIR=$ac_optarg ;;
1258
1259 -mods | --mods | -mo | --mo)
1260 ac_prev=MODS ;;
1261 -mods=* | --mods=* | -mo=* | --mo=*)
1262 MODS=$ac_optarg ;;
1263
1264 -disable | --disable)
1265 ac_prev=DISABLE ;;
1266 -disable=* | --disable=*)
1267 DISABLE=$ac_optarg ;;
1268
1269 -enable | --enable)
1270 ac_prev=ENABLE ;;
1271 -enable=* | --enable=*)
1272 ENABLE=$ac_optarg ;;
1273
1274 -standarddirs | --standarddirs)
1275 ac_prev=STANDARDDIRS ;;
1276 -standarddirs=* | --standarddirs=*)
1277 STANDARDDIRS=$ac_optarg ;;
1278
1279 # -cpp | --cpp)
1280 # ac_prev=cpp ;;
1281 # -cpp=* | --cpp=*)
1282 # CPP=$ac_optarg ;;
1283
1284 -cc | --cc)
1285 ac_prev=CC ;;
1286 -cc=* | --cc=*)
1287 CC=$ac_optarg ;;
1288
1289 -fortran | --fortran | -fc | --fc)
1290 ac_prev=FC ;;
1291 -fc=* | --fc=*)
1292 FC=$ac_optarg ;;
1293
1294 -fs | --fs)
1295 ac_prev=FS ;;
1296 -fs=* | --fs=*)
1297 FS=$ac_optarg ;;
1298
1299 -fs90 | --fs90)
1300 ac_prev=FS90 ;;
1301 -fs90=* | --fs90=*)
1302 FS90=$ac_optarg ;;
1303
1304 -ieee | --ieee)
1305 IEEE=true ;;
1306 -noieee | --noieee)
1307 IEEE= ;;
1308
1309 -use_real4 | -use_r4 | -ur4 | --use_real4 | --use_r4 | --ur4 )
1310 USE_R4=true ;;
1311
1312 -ts | --ts)
1313 TS=true ;;
1314 -papis | --papis)
1315 PAPIS=true ;;
1316 -pcls | --pcls)
1317 PCLS=true ;;
1318 -foolad | --foolad)
1319 FOOLAD=true ;;
1320 -papi | --papi)
1321 PAPI=true ;;
1322 -pcl | --pcl)
1323 PCL=true ;;
1324 -hpmt | --hpmt)
1325 HPMT=true ;;
1326
1327 -gsl | --gsl)
1328 GSL=true ;;
1329
1330 -devel | --devel)
1331 DEVEL=true ;;
1332
1333 -mpi | --mpi)
1334 MPI=true ;;
1335 -mpi=* | --mpi=*)
1336 MPIPATH=$ac_optarg
1337 MPI=true ;;
1338
1339 -omp | --omp)
1340 OMP=true ;;
1341 -omp=* | --omp=*)
1342 OMPFLAG=$ac_optarg
1343 OMP=true ;;
1344
1345 -ds | --ds)
1346 DUMPSTATE=t ;;
1347
1348 -taf_extra | --taf_extra)
1349 ac_prev=TAF_EXTRA ;;
1350 -taf_extra=* | --taf_extra=*)
1351 TAF_EXTRA=$ac_optarg ;;
1352
1353 -tamc_extra | --tamc_extra)
1354 ac_prev=TAMC_EXTRA ;;
1355 -tamc_extra=* | --tamc_extra=*)
1356 TAMC_EXTRA=$ac_optarg ;;
1357
1358 -ignoretime | -ignore_time | --ignoretime | --ignore_time)
1359 IGNORE_TIME="-DIGNORE_TIME" ;;
1360
1361 -es | --es | -embed-source | --embed-source)
1362 EMBED_SRC=t ;;
1363
1364 -*)
1365 echo "Error: unrecognized option: "$ac_option
1366 usage
1367 ;;
1368
1369 *)
1370 echo "Error: unrecognized argument: "$ac_option
1371 usage
1372 ;;
1373
1374 esac
1375
1376 done
1377
1378
1379 if test -f ./.genmakerc ; then
1380 echo
1381 echo "WARNING: genmake2 has detected a copy of the old-style \"./.genmakerc\""
1382 echo " file. This file format is no longer supported. For directions on"
1383 echo " how to setup and use the new \"genmake2\" script, please see:"
1384 echo " http://mitgcm.org/devel_HOWTO/"
1385 echo " and send an email to MITgcm-support@mitgcm.org if you need help."
1386 echo "WARNING: ignore \"./.genmakerc\" and continue."
1387 echo
1388 fi
1389
1390 # Find the MITgcm ${ROOTDIR}
1391 if test "x${ROOTDIR}" = x ; then
1392 tmp=`echo $PWD | sed -e 's/\// /g' | $AWK '{print $NR}'`
1393 if test "x$tmp" = "xbin" -a -d ../model -a -d ../eesupp -a -d ../pkg ; then
1394 ROOTDIR=".."
1395 else
1396 for d in . .. ../.. ../../.. ../../../.. ../../../../.. ; do
1397 if [ -d "$d/model" -a -d "$d/eesupp" -a -d "$d/pkg" ]; then
1398 ROOTDIR=$d
1399 printf "Warning: ROOTDIR was not specified but there appears to be"
1400 echo " a copy of MITgcm at \"$ROOTDIR\" so we'll try it."
1401 break
1402 fi
1403 done
1404 fi
1405 fi
1406 if test "x${ROOTDIR}" = x ; then
1407 echo "Error: Cannot determine ROOTDIR for MITgcm code."
1408 echo " Please specify a ROOTDIR using either an options "
1409 echo " file or a command-line option."
1410 exit 1
1411 fi
1412 if test ! -d ${ROOTDIR} ; then
1413 echo "Error: the specified ROOTDIR (\"$ROOTDIR\") does not exist!"
1414 exit 1
1415 fi
1416
1417 # Find the MITgcm ${THISVER}
1418 version_file="${ROOTDIR}/doc/tag-index"
1419 if test -f $version_file ; then
1420 THISVER=`$AWK '/^checkpoint/{print $1; exit}' $version_file`
1421 #- remove ./BUILD_INFO.h file if older than version_file
1422 if test -f ./BUILD_INFO.h -a ./BUILD_INFO.h -ot $version_file ; then
1423 echo " remove ./BUILD_INFO.h (older than ${version_file})"
1424 rm -f ./BUILD_INFO.h
1425 fi
1426 fi
1427
1428 if test "x$MAKEFILE" = x ; then
1429 MAKEFILE="Makefile"
1430 fi
1431
1432 echo " getting OPTFILE information: "
1433 if test "x${OPTFILE}" = x ; then
1434 if test "x$MITGCM_OF" = x ; then
1435 echo "Warning: no OPTFILE specified so we'll look for possible settings"
1436 printf "\n=== Searching for possible settings for OPTFILE ===\n"
1437 find_possible_configs
1438 else
1439 OPTFILE=$MITGCM_OF
1440 fi
1441 fi
1442 if test "x$OPTFILE" != xNONE ; then
1443 if test -f "$OPTFILE" -a -r "$OPTFILE" ; then
1444 echo " using OPTFILE=\"$OPTFILE\""
1445 . "$OPTFILE"
1446 RETVAL=$?
1447 if test "x$RETVAL" != x0 ; then
1448 printf "Error: failed to source OPTFILE \"$OPTFILE\""
1449 echo "--please check that variable syntax is bash-compatible"
1450 exit 1
1451 fi
1452 if test "x$DUMPSTATE" != xf ; then
1453 cp -f $OPTFILE "genmake_optfile"
1454 fi
1455 else
1456 echo "Error: can't read OPTFILE=\"$OPTFILE\""
1457 exit 1
1458 fi
1459 fi
1460
1461 echo " getting AD_OPTFILE information: "
1462 if test "x${AD_OPTFILE}" = x ; then
1463 if test "x$MITGCM_AD_OF" = x ; then
1464 AD_OPTFILE=$ROOTDIR/tools/adjoint_options/adjoint_default
1465 else
1466 AD_OPTFILE=$MITGCM_AD_OF
1467 fi
1468 fi
1469 if test "x${AD_OPTFILE}" != xNONE ; then
1470 if test -f "$AD_OPTFILE" -a -r "$AD_OPTFILE" ; then
1471 echo " using AD_OPTFILE=\"$AD_OPTFILE\""
1472 . "$AD_OPTFILE"
1473 RETVAL=$?
1474 if test "x$RETVAL" != x0 ; then
1475 printf "Error: failed to source AD_OPTFILE \"$AD_OPTFILE\""
1476 echo "--please check that variable syntax is bash-compatible"
1477 exit 1
1478 fi
1479 if test "x$DUMPSTATE" != xf ; then
1480 cp -f $AD_OPTFILE "genmake_ad_optfile"
1481 fi
1482 else
1483 echo "Error: can't read AD_OPTFILE=\"$AD_OPTFILE\""
1484 exit 1
1485 fi
1486 fi
1487
1488 #====================================================================
1489 # Set default values if not set by the optfile
1490 #
1491 # Check that FC, CC, LINK, CPP, S64, LN, and MAKE are defined. If not,
1492 # either set defaults or complain and abort!
1493 if test ! "x$BASH" = x ; then
1494 # add a trailing space so that it works within the Makefile syntax (see below)
1495 BASH="$BASH "
1496 fi
1497 if test "x$FC" = x ; then
1498 cat <<EOF 1>&2
1499
1500 Error: no Fortran compiler: please specify using one of the following:
1501 1) within the options file ("FC=...") as specified by "-of=OPTFILE"
1502 2) the "-fc=XXX" command-line option
1503 3) the "./genmake_local" file
1504 EOF
1505 exit 1
1506 fi
1507 if test "x$CC" = x ; then
1508 CC=cc
1509 # cat <<EOF 1>&2
1510 # Error: no C compiler: please specify using one of the following:
1511 # 1) within the options file ("CC=...") as specified by "-of=OPTFILE"
1512 # 2) the "-cc=XXX" command-line option
1513 # 3) the "./genmake_local" file
1514 # EOF
1515 # exit 1
1516 fi
1517 if test "x$LINK" = x ; then
1518 LINK=$FC
1519 fi
1520 if test "x$MAKE" = x ; then
1521 MAKE="make"
1522 fi
1523 if test "x$CPP" = x ; then
1524 CPP=cpp
1525 fi
1526 #EH3 === UGLY ===
1527 # The following is an ugly little hack to check for $CPP in /lib/ and
1528 # it should eventually be replaced with a more general function that
1529 # searches a combo of the user's path and a list of "usual suspects"
1530 # to find the correct location for binaries such as $CPP.
1531 for i in " " "/lib/" ; do
1532 echo "#define A a" | $i$CPP > test_cpp 2>&1 && CPP=$i$CPP
1533 done
1534 #EH3 === UGLY ===
1535 echo "#define A a" | $CPP > test_cpp 2>&1
1536 RETVAL=$?
1537 if test "x$RETVAL" != x0 ; then
1538 cat <<EOF 1>&2
1539
1540 Error: C pre-processor "$CPP" failed the test case: please specify using:
1541
1542 1) within the options file ("CPP=...") as specified by "-of=OPTFILE"
1543 2) the "./genmake_local" file
1544 3) with the CPP environment variable
1545
1546 EOF
1547 exit 1
1548 else
1549 rm -f test_cpp
1550 fi
1551 look_for_makedepend
1552 if test "x$LN" = x ; then
1553 LN="ln -s"
1554 fi
1555 echo "test" > genmake_test_ln
1556 $LN genmake_test_ln genmake_tlink
1557 RETVAL=$?
1558 if test "x$RETVAL" != x0 ; then
1559 cat <<EOF 1>&2
1560
1561 Error: The command "ln -s" failed -- please specify a working soft-link
1562 command in the optfile.
1563
1564 EOF
1565 exit 1
1566 fi
1567 test -L genmake_tlink > /dev/null 2>&1
1568 RETVAL=$?
1569 if test "x$RETVAL" = x0 ; then
1570 HAVE_TEST_L=t
1571 fi
1572 rm -f genmake_test_ln genmake_tlink
1573
1574 # Check for broken *.F/*.f handling and fix if possible
1575 check_for_broken_Ff
1576
1577 if test ! "x$MPI" = x ; then
1578 echo " Turning on MPI cpp macros"
1579 DEFINES="$DEFINES -DALLOW_USE_MPI -DALWAYS_USE_MPI"
1580 fi
1581 if test ! "x$OMP" = x ; then
1582 echo " Add OMPFLAG and turn on OpenMP cpp macros"
1583 FFLAGS="$FFLAGS $OMPFLAG"
1584 F90FLAGS="$F90FLAGS $OMPFLAG"
1585 DEFINES="$DEFINES -DUSE_OMP_THREADING"
1586 fi
1587
1588 if test ! "x$USE_R4" = x ; then
1589 echo " Turning on LET_RS_BE_REAL4 cpp flag"
1590 DEFINES="$DEFINES -DLET_RS_BE_REAL4"
1591 fi
1592
1593 if test ! "x$TS" = x ; then
1594 echo " Turning on timing per timestep"
1595 if test ! "x$FOOLAD" = x ; then
1596 DEFINES="$DEFINES -DTIME_PER_TIMESTEP_SFP"
1597 else
1598 DEFINES="$DEFINES -DTIME_PER_TIMESTEP"
1599 fi
1600 PACKAGES="$PACKAGES showflops"
1601 fi
1602 if test ! "x$PAPIS" = x ; then
1603 echo " Turning on PAPI flop summary per timestep"
1604 echo " Please make sure PAPIINC, PAPILIB are defined"
1605 if test ! "x$FOOLAD" = x ; then
1606 DEFINES="$DEFINES -DUSE_PAPI_FLOPS_SFP"
1607 else
1608 DEFINES="$DEFINES -DUSE_PAPI_FLOPS"
1609 fi
1610 INCLUDES="$INCLUDES $PAPIINC"
1611 LIBS="$LIBS $PAPILIB"
1612 PACKAGES="$PACKAGES showflops"
1613 fi
1614 if test ! "x$PCLS" = x ; then
1615 echo " Turning on PCL counter summary per timestep"
1616 echo " Please make sure PCLINC, PCLLIB are defined"
1617 if test ! "x$FOOLAD" = x ; then
1618 DEFINES="$DEFINES -DUSE_PCL_FLOPS_SFP"
1619 else
1620 DEFINES="$DEFINES -DUSE_PCL_FLOPS"
1621 fi
1622 INCLUDES="$INCLUDES $PCLINC"
1623 LIBS="$LIBS $PCLLIB"
1624 PACKAGES="$PACKAGES showflops"
1625 fi
1626 if test ! "x$PAPI" = x ; then
1627 if test ! "x$PAPIS" = x ; then
1628 echo " PAPI performance analysis and flop summary per timestep cannot co-exist!"
1629 echo " Sticking with PAPI flop summary per timestep!"
1630 else
1631 echo " Turning on performance analysis with PAPI"
1632 echo " Please make sure PAPIINC, PAPILIB are defined"
1633 DEFINES="$DEFINES -DUSE_PAPI"
1634 INCLUDES="$INCLUDES $PAPIINC"
1635 LIBS="$LIBS $PAPILIB"
1636 fi
1637 fi
1638 if test ! "x$PCL" = x ; then
1639 if test ! "x$PCLS" = x ; then
1640 echo " PCL performance analysis and flop summary per timestep cannot co-exist!"
1641 echo " Sticking with PCL flop summary per timestep!"
1642 else
1643 echo " Turning on performance analysis with PCL"
1644 echo " Please make sure PCLINC, PCLLIB are defined"
1645 DEFINES="$DEFINES -DUSE_PCL"
1646 INCLUDES="$INCLUDES $PCLINC"
1647 LIBS="$LIBS $PCLLIB"
1648 fi
1649 fi
1650 if test ! "x$HPMT" = x ; then
1651 if test ! "x$PAPI" = x ; then
1652 echo " PAPI and the HPM Toolkit cannot co-exist!"
1653 echo " Sticking with PAPI!"
1654 else if test ! "x$PCL" = x ; then
1655 echo " PCL and the HPM Toolkit cannot co-exist!"
1656 echo " Sticking with PCL!"
1657 else
1658 echo " Turning on performance analysis with the HPM Toolkit"
1659 echo " Please make sure HPMTINC, HPMTLIB are defined"
1660 DEFINES="$DEFINES -DUSE_LIBHPM"
1661 INCLUDES="$INCLUDES $HPMTINC"
1662 LIBS="$LIBS $HPMTLIB"
1663 fi
1664 fi
1665 fi
1666 if test ! "x$GSL" = x ; then
1667 echo " Turning on use of GSL to control floating point calculations"
1668 echo " Please make sure GSLINC, GSLLIB are defined"
1669 DEFINES="$DEFINES -DUSE_GSL_IEEE"
1670 INCLUDES="$INCLUDES $GSLINC"
1671 LIBS="$LIBS $GSLLIB"
1672 fi
1673 #- if USE_EXTENDED_SRC is set, add EXTENDED_SRC_FLAG to FFLAGS :
1674 if test ! "x$USE_EXTENDED_SRC" = x ; then
1675 FFLAGS="$FFLAGS $EXTENDED_SRC_FLAG"
1676 F90FIXEDFORMAT="$F90FIXEDFORMAT $EXTENDED_SRC_FLAG"
1677 fi
1678
1679 printf "\n=== Checking system libraries ===\n"
1680 printf " Do we have the system() command using $FC... "
1681 cat > genmake_tcomp.$FS <<EOF
1682 program hello
1683 call system('echo hi')
1684 end
1685 EOF
1686 $FC $FFLAGS -o genmake_tcomp genmake_tcomp.$FS > genmake_tcomp.log 2>&1
1687 RETVAL=$?
1688 if test "x$RETVAL" = x0 ; then
1689 HAVE_SYSTEM=t
1690 DEFINES="$DEFINES -DHAVE_SYSTEM"
1691 echo "yes"
1692 else
1693 HAVE_SYSTEM=
1694 echo "no"
1695 fi
1696 rm -f genmake_tcomp*
1697
1698 printf " Do we have the fdate() command using $FC... "
1699 cat > genmake_tcomp.$FS <<EOF
1700 program hello
1701 CHARACTER*(128) string
1702 string = ' '
1703 call fdate( string )
1704 print *, string
1705 end
1706 EOF
1707 $FC $FFLAGS -o genmake_tcomp genmake_tcomp.$FS > genmake_tcomp.log 2>&1
1708 RETVAL=$?
1709 if test "x$RETVAL" = x0 ; then
1710 HAVE_FDATE=t
1711 DEFINES="$DEFINES -DHAVE_FDATE"
1712 echo "yes"
1713 else
1714 HAVE_FDATE=
1715 echo "no"
1716 fi
1717 rm -f genmake_tcomp*
1718
1719 printf " Do we have the etime() command using $FC... "
1720 cat > genmake_tcomp.$FS <<EOF
1721 program hello
1722 REAL*4 ACTUAL, TARRAY(2)
1723 EXTERNAL ETIME
1724 REAL*4 ETIME
1725 actual = etime( tarray )
1726 print *, tarray
1727 end
1728 EOF
1729 $FC $FFLAGS -o genmake_tcomp genmake_tcomp.$FS > genmake_tcomp.log 2>&1
1730 RETVAL=$?
1731 if test "x$RETVAL" = x0 ; then
1732 HAVE_ETIME=t
1733 DEFINES="$DEFINES -DHAVE_ETIME"
1734 echo "yes"
1735 else
1736 HAVE_ETIME=
1737 echo "no"
1738 fi
1739 rm -f genmake_tcomp*
1740
1741 printf " Can we call simple C routines (here, \"cloc()\") using $FC... "
1742 check_HAVE_CLOC
1743 if test "x$HAVE_CLOC" != x ; then
1744 echo "yes"
1745 else
1746 echo "no"
1747 if test "x$EMBED_SRC" = xt ; then
1748 echo " WARNING: you requested file embedding but it has"
1749 echo " been disabled since C code cannot be called"
1750 EMBED_SRC=
1751 fi
1752 fi
1753 rm -f genmake_t*
1754
1755 printf " Can we unlimit the stack size using $FC... "
1756 check_HAVE_SETRLSTK
1757 if test "x$HAVE_SETRLSTK" = xt ; then
1758 echo "yes"
1759 else
1760 echo "no"
1761 fi
1762 rm -f genmake_t*
1763
1764 printf " Can we register a signal handler using $FC... "
1765 check_HAVE_SIGREG
1766 if test "x$HAVE_SIGREG" = xt ; then
1767 echo "yes"
1768 else
1769 echo "no"
1770 fi
1771 rm -f genmake_t*
1772
1773 printf " Can we use stat() through C calls... "
1774 check_HAVE_STAT
1775 if test "x$HAVE_STAT" != x ; then
1776 echo "yes"
1777 else
1778 echo "no"
1779 fi
1780 rm -f genmake_t*
1781
1782 printf " Can we create NetCDF-enabled binaries... "
1783 check_netcdf_libs
1784 if test "x$HAVE_NETCDF" != x ; then
1785 echo "yes"
1786 else
1787 echo "no"
1788 fi
1789 DEFINES="$DEFINES $IGNORE_TIME"
1790
1791 if test "x$EMBED_SRC" = xt ; then
1792 build_embed_encode
1793 fi
1794 if test "x$EMBED_SRC" = xt ; then
1795 ENABLE="$ENABLE embed_files"
1796 fi
1797
1798
1799 printf "\n=== Setting defaults ===\n"
1800 printf " Adding MODS directories: "
1801 for d in $MODS ; do
1802 if test ! -d $d ; then
1803 echo
1804 echo "Error: MODS directory \"$d\" not found!"
1805 exit 1
1806 else
1807 printf "$d "
1808 SOURCEDIRS="$SOURCEDIRS $d"
1809 INCLUDEDIRS="$INCLUDEDIRS $d"
1810 fi
1811 done
1812 echo
1813
1814 if test "x${PLATFORM}" = x ; then
1815 PLATFORM=$p_PLATFORM
1816 fi
1817
1818 if test "x${EXEDIR}" = x ; then
1819 tmp=`echo $PWD | sed -e 's/\// /g' | $AWK '{print $NR}'`
1820 if test "x$tmp" = "xbin" -a -d ../exe -a $ROOTDIR = .. ; then
1821 EXEDIR=../exe
1822 else
1823 EXEDIR=.
1824 fi
1825 fi
1826 if test ! -d ${EXEDIR} ; then
1827 echo "Error: the specified EXEDIR (\"$EXEDIR\") does not exist!"
1828 exit 1
1829 fi
1830
1831 if test "x${TOOLSDIR}" = x ; then
1832 TOOLSDIR="$ROOTDIR/tools"
1833 fi
1834 if test ! -d ${TOOLSDIR} ; then
1835 echo "Error: the specified TOOLSDIR (\"$TOOLSDIR\") does not exist!"
1836 exit 1
1837 fi
1838 if test "x$S64" = x ; then
1839 echo "3.0 _d 3" | ${TOOLSDIR}/set64bitConst.sh > /dev/null 2>&1
1840 RETVAL=$?
1841 if test "x${RETVAL}" = x0 ; then
1842 S64='$(TOOLSDIR)/set64bitConst.sh'
1843 else
1844 echo "3.0 _d 3" | ${TOOLSDIR}/set64bitConst.csh > /dev/null 2>&1
1845 RETVAL=$?
1846 if test "x${RETVAL}" = x0 ; then
1847 S64='$(TOOLSDIR)/set64bitConst.csh'
1848 else
1849 cat <<EOF
1850
1851 ERROR: neither of the two default scripts:
1852
1853 ${TOOLSDIR}/set64bitConst.sh
1854 ${TOOLSDIR}/set64bitConst.csh
1855
1856 are working so please check paths or specify (with \$S64) a
1857 working version of this script.
1858
1859 EOF
1860 exit 1
1861 fi
1862 fi
1863 fi
1864 THIS_SCRIPT=`echo ${0} | sed 's:'$TOOLSDIR':\$(TOOLSDIR):'`
1865
1866 EXECUTABLE=${EXECUTABLE:-mitgcmuv}
1867
1868 # Set Standard Code Directories:
1869 if test "x$STANDARDDIRS" = xUSE_THE_DEFAULT ; then
1870 STANDARDDIRS="eesupp model"
1871 fi
1872 # if model in Standard-Code-Dir, add eesupp (needed to compile model)
1873 echo " $STANDARDDIRS " | grep ' model ' > /dev/null 2>&1
1874 ckM=$?
1875 echo " $STANDARDDIRS " | grep ' eesupp ' > /dev/null 2>&1
1876 ckE=$?
1877 if test $ckM = 0 -a $ckE = 1 ; then
1878 STANDARDDIRS="$STANDARDDIRS eesupp"
1879 fi
1880
1881 # We have a special set of source files in eesupp/src which are
1882 # generated from some template source files. We'll make them first so
1883 # they appear as regular source code
1884 if test -r $ROOTDIR"/eesupp/src/Makefile" ; then
1885 echo " Making source files in eesupp from templates"
1886 ( cd $ROOTDIR"/eesupp/src/" && $MAKE ) > make_eesupp.errors 2>&1
1887 RETVAL=$?
1888 if test "x${RETVAL}" = x0 ; then
1889 rm -f make_eesupp.errors
1890 else
1891 echo "Error: problem encountered while building source files in eesupp:"
1892 cat make_eesupp.errors 1>&2
1893 exit 1
1894 fi
1895 fi
1896
1897 #same for pkg/exch2 and pkg/regrid
1898 for pdir in exch2 regrid ; do
1899 if test -r $ROOTDIR"/pkg/${pdir}/Makefile" ; then
1900 echo " Making source files in pkg/${pdir} from templates"
1901 ( cd $ROOTDIR"/pkg/"${pdir} && $MAKE ) > make_${pdir}.errors 2>&1
1902 RETVAL=$?
1903 if test "x${RETVAL}" = x0 ; then
1904 rm -f make_${pdir}.errors
1905 else
1906 echo "Error: problem encountered while building source files in pkg/${pdir}:"
1907 cat make_${pdir}.errors 1>&2
1908 exit 1
1909 fi
1910 fi
1911 done
1912
1913 printf "\n=== Determining package settings ===\n"
1914 if test "x${PDEPEND}" = x ; then
1915 tmp=$ROOTDIR"/pkg/pkg_depend"
1916 if test -r $tmp ; then
1917 PDEPEND=$tmp
1918 else
1919 echo "Warning: No package dependency information was specified."
1920 echo " Please check that ROOTDIR/pkg/pkg_depend exists."
1921 fi
1922 else
1923 if test ! -r ${PDEPEND} ; then
1924 echo "Error: can't read package dependency info from PDEPEND=\"$PDEPEND\""
1925 exit 1
1926 fi
1927 fi
1928 echo " getting package dependency info from $PDEPEND"
1929 # Strip the comments and then convert the dependency file into
1930 # two arrays: PNAME, DNAME
1931 get_pdepend_list $PDEPEND
1932
1933 # Search for default packages. Note that a "$ROOTDIR/pkg/pkg_groups"
1934 # file has been added so that, for convenience, one can specify
1935 # groups of packages using names like "ocean" and "atmosphere".
1936 echo " checking default package list: "
1937 if test "x${PDEFAULT}" = x ; then
1938 for i in "." $MODS ; do
1939 if test -r $i"/packages.conf" ; then
1940 PDEFAULT=$i"/packages.conf"
1941 break
1942 fi
1943 done
1944 fi
1945 if test "x${PDEFAULT}" = x ; then
1946 PDEFAULT="$ROOTDIR/pkg/pkg_default"
1947 fi
1948 if test "x${PDEFAULT}" = xNONE ; then
1949 echo " default packages file disabled"
1950 else
1951 if test ! -r $PDEFAULT ; then
1952 echo "Warning: can't read default packages from PDEFAULT=\"$PDEFAULT\""
1953 else
1954 echo " using PDEFAULT=\"$PDEFAULT\""
1955 # Strip the comments and add all the names
1956 def=`cat $PDEFAULT | sed -e 's/#.*$//g' | $AWK '(NF>0){print $0}'`
1957 RETVAL=$?
1958 if test "x${RETVAL}" != x0 ; then
1959 printf "Error: can't parse default package list "
1960 echo "-- please check PDEFAULT=\"$PDEFAULT\""
1961 exit 1
1962 fi
1963 for i in $def ; do
1964 PACKAGES="$PACKAGES $i"
1965 done
1966 echo " before group expansion packages are:$PACKAGES"
1967 RET=1
1968 while test $RET = 1 ; do expand_pkg_groups; RET=$?; done
1969 echo " after group expansion packages are: $PACKAGES"
1970 fi
1971 fi
1972
1973 echo " applying DISABLE settings"
1974 echo "" > ./.tmp_pack
1975 for i in $PACKAGES ; do
1976 echo $i >> ./.tmp_pack
1977 done
1978 for i in `grep "-" ./.tmp_pack` ; do
1979 j=`echo $i | sed 's/[-]//'`
1980 DISABLE="$DISABLE $j"
1981 done
1982 pack=
1983 for p in $PACKAGES ; do
1984 addit="t"
1985 for d in $DISABLE ; do
1986 if test "x$p" = "x$d" ; then
1987 addit="f"
1988 fi
1989 done
1990 if test "x$addit" = xt ; then
1991 pack="$pack $p"
1992 fi
1993 done
1994 PACKAGES="$pack"
1995 echo " applying ENABLE settings"
1996 echo "" > ./.tmp_pack
1997 PACKAGES="$PACKAGES $ENABLE"
1998 # Test if each explicitly referenced package exists
1999 for i in $PACKAGES ; do
2000 j=`echo $i | sed 's/[-+]//'`
2001 if test ! -d "$ROOTDIR/pkg/$j" ; then
2002 echo "Error: can't find package $i at \"$ROOTDIR/pkg/$i\""
2003 exit 1
2004 fi
2005 echo $i >> ./.tmp_pack
2006 done
2007 PACKAGES=
2008 for i in `grep -v "-" ./.tmp_pack | sort | uniq` ; do
2009 PACKAGES="$PACKAGES $i"
2010 done
2011 rm -f ./.tmp_pack
2012 echo " packages are: $PACKAGES"
2013
2014 # Check for package MNC: if NetCDF is available, then build the MNC
2015 # template files ; otherwise, delete mnc from the list of packages.
2016 echo " $PACKAGES " | grep ' mnc ' > /dev/null 2>&1
2017 RETVAL=$?
2018 if test "x$RETVAL" = x0 ; then
2019 if test "x$HAVE_NETCDF" != xt ; then
2020 cat <<EOF
2021
2022 *********************************************************************
2023 WARNING: the "mnc" package was enabled but tests failed to compile
2024 NetCDF applications. Please check that:
2025
2026 1) NetCDF is correctly installed for this compiler and
2027 2) the LIBS variable (within the "optfile") specifies the correct
2028 NetCDF library to link against.
2029
2030 Due to this failure, the "mnc" package is now DISABLED.
2031 *********************************************************************
2032
2033 EOF
2034 PACKAGES=`echo $PACKAGES | sed -e 's/mnc//g'`
2035 DISABLE="$DISABLE mnc"
2036 else
2037 ( cd $ROOTDIR"/pkg/mnc" && $MAKE testclean && $MAKE templates ) > make_mnc.errors 2>&1
2038 RETVAL=$?
2039 if test "x${RETVAL}" = x0 ; then
2040 rm -f make_mnc.errors
2041 else
2042 echo "Error: problem encountered while building source files in pkg/mnc:"
2043 cat make_mnc.errors 1>&2
2044 exit 1
2045 fi
2046 fi
2047 fi
2048
2049 # Check for package PROFILES: if NetCDF is not available,
2050 # then delete profiles from the list of available packages.
2051 echo " $PACKAGES " | grep ' profiles ' > /dev/null 2>&1
2052 RETVAL=$?
2053 if test "x$RETVAL" = x0 ; then
2054 if test "x$HAVE_NETCDF" != xt ; then
2055 cat <<EOF
2056
2057 *********************************************************************
2058 WARNING: the "profiles" package was enabled but tests failed to
2059 compile NetCDF applications. Please check that:
2060
2061 1) NetCDF is correctly installed for this compiler and
2062 2) the LIBS variable (within the "optfile") specifies the correct
2063 NetCDF library to link against.
2064
2065 Due to this failure, the "profiles" package is now DISABLED.
2066 *********************************************************************
2067
2068 EOF
2069 PACKAGES=`echo $PACKAGES | sed -e 's/profiles//g'`
2070 DISABLE="$DISABLE profiles"
2071 fi
2072 fi
2073
2074 echo " applying package dependency rules"
2075 ck=
2076 while test "x$ck" != xtt ; do
2077 i=0
2078 # rtot=${#PNAME[@]}
2079 rtot=$nname
2080 while test $i -le $rtot ; do
2081
2082 # Is $pname in the current $PACKAGES list?
2083 # pname=${PNAME[$i]}
2084 tmp="pname=\"\$PNAME_$i\""
2085 eval $tmp
2086 pin="f"
2087 for p in $PACKAGES ; do
2088 if test "x$p" = "x$pname" ; then
2089 pin="t"
2090 fi
2091 done
2092 # or in the current $STANDARDDIRS list?
2093 for p in $STANDARDDIRS ; do
2094 if test "x$p" = "x$pname" ; then pin="t" ; fi
2095 done
2096
2097 # Is the DNAME entry a (+) or (-) rule ?
2098 tmp="dname=\"\$DNAME_$i\""
2099 eval $tmp
2100 plus="-"
2101 echo $dname | grep '^+' > /dev/null 2>&1
2102 RETVAL=$?
2103 if test "x$RETVAL" = x0 ; then
2104 plus="+"
2105 fi
2106
2107 # Is $dname in the current $PACKAGES list?
2108 dname=`echo $dname | sed -e 's/^[+-]//'`
2109 din="f"
2110 for p in $PACKAGES ; do
2111 if test "x$p" = "x$dname" ; then
2112 din="t"
2113 fi
2114 done
2115
2116 # Do we need to add $dname according to the dependency rules?
2117 if test "x$pin" = xt -a "x$plus" = "x+" -a "x$din" = xf ; then
2118 #echo " " $pname ": need to add :" $dname
2119 in_dis="f"
2120 for dis in $DISABLE ; do
2121 if test "x$dis" = "x$dname" ; then
2122 in_dis="t"
2123 fi
2124 done
2125 if test "x$in_dis" = xt ; then
2126 echo "Error: can't satisfy package dependencies:"
2127 echo " \"$dname\" is required by the dependency rules"
2128 echo " but is disallowed by the DISABLE settings"
2129 exit 1
2130 else
2131 PACKAGES="$PACKAGES $dname"
2132 ck=
2133 fi
2134 fi
2135
2136 # Do we need to get rid of $dname according to the dependency rules?
2137 if test "x$pin" = xt -a "x$plus" = "x-" -a "x$din" = xt; then
2138 echo "Error: can't satisfy package dependencies:"
2139 echo " \"$pname\" was requested but is disallowed by"
2140 echo " the dependency rules for \"$dname\""
2141 exit 1
2142 fi
2143 i=`echo "$i + 1" | bc -l`
2144 #i=$(( $i + 1 ))
2145 done
2146 ck=$ck"t"
2147 done
2148 echo " packages are: $PACKAGES"
2149 for i in $PACKAGES ; do
2150 adr="$ROOTDIR/pkg/$i"
2151 if test -d $adr ; then
2152 SOURCEDIRS="$SOURCEDIRS $adr"
2153 INCLUDEDIRS="$INCLUDEDIRS $adr"
2154 if test "x$i" = xautodiff ; then
2155 AUTODIFF_PKG_USED=t
2156 fi
2157 else
2158 echo "Error: the directory \"$adr\" for package $i doesn't exist"
2159 exit 1
2160 fi
2161 done
2162
2163 # Create a list of #define and #undef to enable/disable packages
2164 PACKAGES_DOT_H=PACKAGES_CONFIG.h
2165 # The following UGLY HACK sets multiple "#undef"s and it needs to go
2166 # away. On 2003-08-12, CNH, JMC, and EH3 agreed that the CPP_OPTIONS.h
2167 # file would eventually be split up so that all package-related #define
2168 # statements could be separated and handled only by genmake.
2169 names=`ls -1 "$ROOTDIR/pkg"`
2170 all_pack=
2171 DISABLED_PACKAGES=
2172 for n in $names ; do
2173 if test -d "$ROOTDIR/pkg/$n" -a "x$n" != xCVS ; then
2174 has_pack="f"
2175 for pack in $PACKAGES ; do
2176 if test "x$pack" = "x$n" ; then
2177 has_pack="t"
2178 break
2179 fi
2180 done
2181 if test "x$has_pack" = xf ; then
2182 undef=`echo "ALLOW_$n" | sed -e 'y/abcdefghijklmnopqrstuvwxyz/ABCDEFGHIJKLMNOPQRSTUVWXYZ/'`
2183 DISABLED_PACKAGES="$DISABLED_PACKAGES -U$undef"
2184 fi
2185 fi
2186 done
2187 ENABLED_PACKAGES=
2188 for i in $PACKAGES ; do
2189 def=`echo "ALLOW_$i" | sed -e 'y/abcdefghijklmnopqrstuvwxyz/ABCDEFGHIJKLMNOPQRSTUVWXYZ/'`
2190 ENABLED_PACKAGES="$ENABLED_PACKAGES -D$def"
2191 #eh3 DEFINES="$DEFINES -D$def"
2192
2193 #EH3 WARNING : This is an UGLY HACK that needs to be removed!!!
2194 case $i in
2195 aim_v23)
2196 ENABLED_PACKAGES="$ENABLED_PACKAGES -DALLOW_AIM"
2197 echo "Warning: ALLOW_AIM is set to enable aim_v23."
2198 ;;
2199 esac
2200 #EH3 WARNING : This is an UGLY HACK that needs to be removed!!!
2201
2202 done
2203
2204 echo " Adding STANDARDDIRS='$STANDARDDIRS'"
2205 BUILDDIR=${BUILDDIR:-.}
2206 if test "x$STANDARDDIRS" != x ; then
2207 for d in $STANDARDDIRS ; do
2208 adr="$ROOTDIR/$d/src"
2209 if test ! -d $adr ; then
2210 echo "Error: directory $adr not found -- please check that ROOTDIR=\"$ROOTDIR\""
2211 echo " is correct and that you correctly specified the STANDARDDIRS option"
2212 exit 1
2213 else
2214 SOURCEDIRS="$SOURCEDIRS $adr"
2215 fi
2216 adr="$ROOTDIR/$d/inc"
2217 if test ! -d $adr ; then
2218 echo "Error: directory $adr not found -- please check that ROOTDIR=\"$ROOTDIR\""
2219 echo " is correct and that you correctly specified the STANDARDDIRS option"
2220 exit 1
2221 else
2222 INCLUDEDIRS="$INCLUDEDIRS $adr"
2223 fi
2224 done
2225 fi
2226
2227 echo " Searching for *OPTIONS.h files in order to warn about the presence"
2228 echo " of \"#define \"-type statements that are no longer allowed:"
2229 CPP_OPTIONS=
2230 CPP_EEOPTIONS=
2231 spaths=". $INCLUDEDIRS"
2232 names=`ls -1 "$ROOTDIR/pkg"`
2233 for i in $spaths ; do
2234 try="$i/CPP_OPTIONS.h"
2235 if test -f $try -a -r $try -a "x$CPP_OPTIONS" = x ; then
2236 echo " found CPP_OPTIONS=\"$try\""
2237 CPP_OPTIONS="$try"
2238 # New safety test: make sure packages are not mentioned in CPP_OPTIONS.h
2239 for n in $names ; do
2240 test_for_package_in_cpp_options $CPP_OPTIONS $n
2241 done
2242 fi
2243 try="$i/CPP_EEOPTIONS.h"
2244 if test -f $try -a -r $try -a "x$CPP_EEOPTIONS" = x ; then
2245 echo " found CPP_EEOPTIONS=\"$try\""
2246 # New safety test: make sure MPI is not determined by CPP_EEOPTIONS.h
2247 #**** not yet enabled ****
2248 # test_for_mpi_in_cpp_eeoptions $try
2249 #**** not yet enabled ****
2250 CPP_EEOPTIONS="$try"
2251 fi
2252 done
2253 if test "x$CPP_OPTIONS" = x ; then
2254 echo "Error: can't find \"CPP_OPTIONS.h\" in the path list: $spaths"
2255 exit 1
2256 fi
2257
2258 # Here, we build the list of files to be "run through" the adjoint
2259 # compiler.
2260 if test -f ./adSrcFiles.tmp ; then
2261 rm -f ./adSrcFiles.tmp
2262 fi
2263 echo " Creating the list of files for the adjoint compiler."
2264 for i in $SOURCEDIRS ; do
2265 list_files=`( cd $i && ls -1 *.list 2>/dev/null )`
2266 for j in $list_files ; do
2267 cat $i/$j >> adSrcFiles.tmp
2268 done
2269 done
2270 if test ! "x"$FS = "x.f" ; then
2271 cat adSrcFiles.tmp | sed -e "s/\.f/.$FS/g" > adSrcFiles.tmp_f
2272 mv -f adSrcFiles.tmp_f adSrcFiles.tmp
2273 fi
2274
2275 echo
2276 echo "=== Creating the Makefile ==="
2277 echo " setting INCLUDES"
2278 for i in $INCLUDEDIRS ; do
2279 if test ! -d $i ; then
2280 echo "Warning: can't find INCLUDEDIRS=\"$i\""
2281 fi
2282 done
2283
2284 if test ! "x$DIVA" = x ; then
2285 echo " Creating the pseudo-MPI include directory"
2286 INCLUDES="-I./mpi_headers $INCLUDES"
2287 rm -rf ./mpi_headers
2288 mkdir -p ./mpi_headers
2289
2290 if test "x$MPIINCLUDEDIR" = x ; then
2291 if test "x$MPIHOME" = x ; then
2292 MPIHOME='/usr'
2293 fi
2294 MPIINCLUDEDIR='$MPIHOME/include'
2295 fi
2296
2297 if test -r $MPIINCLUDEDIR/mpif.h ; then
2298 for i in $MPI_HEADER_FILES; do
2299 cp -p $MPIINCLUDEDIR/$i ./mpi_headers
2300 done
2301
2302 perl -i -pe 's/MPI_DISPLACEMENT_CURRENT=-1_8/MPI_DISPLACEMENT_CURRENT=-1/g' mpi_headers/mpif.h
2303 else
2304 echo " We cannot create a copy of mpif.h!"
2305 # exit -1
2306 fi
2307 fi
2308
2309 echo " Determining the list of source and include files"
2310 rm -rf .links.tmp
2311 mkdir .links.tmp
2312 touch .links.tmp/foo
2313 if test ! -r ".links.tmp/foo" ; then
2314 echo
2315 echo "ERROR : something is wrong with your directory permissions or"
2316 echo " your user file-creation mask (\"umask\") since creating a"
2317 echo " sub-dir, touch-ing a file within it, and then reading it is"
2318 echo " not working. Please try setting your umask to something"
2319 echo " sane such as:"
2320 echo
2321 echo " umask 0002"
2322 echo
2323 echo " and please verify that you have the proper permissions for"
2324 echo " creating sub-directories and then reading files created"
2325 echo " within them."
2326 echo
2327 exit 1
2328 fi
2329 rm -f .links.tmp/foo
2330
2331 if test "x$OPENAD" != x ; then
2332 OAD_DONT_COMPILE="/dev/null"
2333 OAD_DONT_TRANSFORM="/dev/null"
2334 OAD_KEEP_ORIGINAL="/dev/null"
2335 OAD_CB2M_FILES="/dev/null"
2336 echo " looking for dontCompile file: "
2337 for i in "." $MODS ; do
2338 if test -r $i"/dontCompile" ; then
2339 OAD_DONT_COMPILE=$i"/dontCompile"
2340 echo " found $OAD_DONT_COMPILE"
2341 break
2342 fi
2343 done
2344 echo " looking for dontTransform file: "
2345 for i in "." $MODS ; do
2346 if test -r $i"/dontTransform" ; then
2347 OAD_DONT_TRANSFORM=$i"/dontTransform"
2348 echo " found $OAD_DONT_TRANSFORM"
2349 break
2350 fi
2351 done
2352 echo " looking for keepOriginal file: "
2353 for i in "." $MODS ; do
2354 if test -r $i"/keepOriginal" ; then
2355 OAD_KEEP_ORIGINAL=$i"/keepOriginal"
2356 echo " found $OAD_KEEP_ORIGINAL"
2357 break
2358 fi
2359 done
2360 echo " looking for cb2mFiles: "
2361 for i in "." $MODS ; do
2362 if test -r $i"/cb2mFiles" ; then
2363 OAD_CB2M_FILES=$i"/cb2mFiles"
2364 echo " found $OAD_CB2M_FILES"
2365 break
2366 fi
2367 done
2368 echo " OpenAD exceptions: "
2369 fi
2370
2371 echo "# This section creates symbolic links" > srclinks.tmp
2372 echo "" >> srclinks.tmp
2373 printf 'F77_SRC_FILES = ' > F77srclist.tmp
2374 printf 'NON_AD_F77_SRC_FILES = ' > nonADF77srclist.tmp
2375 printf 'C_SRC_FILES = ' > csrclist.tmp
2376 printf 'F90_SRC_FILES = ' > F90srclist.tmp
2377 printf 'H_SRC_FILES = ' > hsrclist.tmp
2378 printf 'AD_FLOW_FILES = ' > ad_flow_files.tmp
2379 alldirs="$SOURCEDIRS $INCLUDEDIRS ."
2380 for d in $alldirs ; do
2381 deplist=
2382 sfiles=`( cd $d; echo *.[h,c,F] *.flow )`
2383 sfiles=`( echo $sfiles; cd $d; echo *.F90 )`
2384 if test "x$OPENAD" != x ; then
2385 sfiles=`( echo $sfiles | grep -v _cb2m\. )`
2386 fi
2387 for sf in $sfiles ; do
2388 if test ! -r ".links.tmp/$sf" ; then
2389 if test -f "$d/$sf" ; then
2390 ignore_f=f
2391 case $d/$sf in
2392 ./$PACKAGES_DOT_H)
2393 ignore_f=t
2394 ;;
2395 ./AD_CONFIG.h)
2396 ignore_f=t
2397 ;;
2398 ./FC_NAMEMANGLE.h)
2399 ignore_f=t
2400 ;;
2401 ./BUILD_INFO.h)
2402 ignore_f=t
2403 ;;
2404 ./EMBEDDED_FILES.h)
2405 ignore_f=t
2406 ;;
2407 *)
2408 # For the local directory *ONLY*,
2409 # ignore all soft-links
2410 if test "x$HAVE_TEST_L" = xt -a "x$d" = x. -a -L $sf ; then
2411 ignore_f=t
2412 else
2413 touch .links.tmp/$sf
2414 deplist="$deplist $sf"
2415 fi
2416 ;;
2417 esac
2418 if test "x$ignore_f" = xf ; then
2419 extn=`echo $sf | $AWK -F. '{print $NF}'`
2420 case $extn in
2421 F)
2422 echo " \\" >> F77srclist.tmp
2423 printf " $sf" >> F77srclist.tmp
2424 if test "x$OPENAD" != x ; then
2425 basename=${sf%%.F}
2426 isAD=`egrep ^$basename.f'[ ]*' adSrcFiles.tmp`
2427 if test -z "$isAD" ; then
2428 toBeIgnored=`egrep ^$basename'[ ]*' ${OAD_DONT_COMPILE}`
2429 if test -z "$toBeIgnored" ; then
2430 echo " \\" >> nonADF77srclist.tmp
2431 printf " $sf" >> nonADF77srclist.tmp
2432 else
2433 echo " not to be compiled : $sf"
2434 fi
2435 else # file is initially listed as an AD file we want to exclude it
2436 # or we want to retain the untransformed version
2437 notToBeTransformed=`egrep ^$basename'[ ]*' ${OAD_DONT_TRANSFORM}`
2438 untransformedVersionToBeKept=`egrep ^$basename'[ ]*' ${OAD_KEEP_ORIGINAL}`
2439 if test -n "$notToBeTransformed"; then
2440 echo " not to be transformed: $sf"
2441 fi
2442 if test -n "$untransformedVersionToBeKept" ; then
2443 echo " original to be kept : $sf"
2444 fi
2445 if test -n "$notToBeTransformed" -o -n "$untransformedVersionToBeKept" ; then
2446 echo " \\" >> nonADF77srclist.tmp
2447 printf " $sf" >> nonADF77srclist.tmp
2448 fi
2449 fi
2450 fi
2451 ;;
2452 F90)
2453 echo " \\" >> F90srclist.tmp
2454 printf " $sf" >> F90srclist.tmp
2455 ;;
2456 c)
2457 echo " \\" >> csrclist.tmp
2458 printf " $sf" >> csrclist.tmp
2459 ;;
2460 h)
2461 echo " \\" >> hsrclist.tmp
2462 printf " $sf" >> hsrclist.tmp
2463 ;;
2464 flow)
2465 echo " \\" >> ad_flow_files.tmp
2466 printf " $sf" >> ad_flow_files.tmp
2467 ;;
2468 esac
2469 fi
2470 fi
2471 fi
2472 done
2473 if test "x$deplist" != x ; then
2474 if test "$d" != "." ; then
2475 echo "" >> srclinks.tmp
2476 echo "# These files are linked from $d" >> srclinks.tmp
2477 echo "$deplist :" >> srclinks.tmp
2478 # We need to make sure that the link isn't already there.
2479 # This may happen when make thinks that a header file has to be "remade"
2480 # because a module it depends on has changed. In this case we do nothing.
2481 printf "\tif [ ! -L \$@ ]; then \$(LN) %s/\$@ \$@; fi\n" $d >> srclinks.tmp
2482 fi
2483 fi
2484 done
2485 rm -rf .links.tmp
2486 echo "" >> F77srclist.tmp
2487 echo "" >> nonADF77srclist.tmp
2488 echo "" >> csrclist.tmp
2489 echo "" >> F90srclist.tmp
2490 echo "" >> hsrclist.tmp
2491 echo "" >> ad_flow_files.tmp
2492
2493 CMDLINE=$0
2494 for xx in "$@" ; do nw=`echo $xx | wc -w`
2495 if test $nw = '1' ; then CMDLINE="$CMDLINE $xx"
2496 else CMDLINE="$CMDLINE '$xx'" ; fi
2497 done
2498
2499 if test -f $MAKEFILE ; then
2500 mv -f $MAKEFILE "$MAKEFILE.old"
2501 fi
2502 echo " Writing makefile: $MAKEFILE"
2503 echo "# Multithreaded + multi-processing makefile for:" > $MAKEFILE
2504 echo "# $MACHINE" >> $MAKEFILE
2505 echo "# This makefile was generated automatically on" >> $MAKEFILE
2506 echo "# $THISDATE" >> $MAKEFILE
2507 echo "# by the command:" >> $MAKEFILE
2508 echo "# $CMDLINE" >> $MAKEFILE
2509 echo "# executed by:" >> $MAKEFILE
2510 echo "# ${THISUSER}@${THISHOST}:${THISCWD}" >> $MAKEFILE
2511
2512 EXE_AD=$EXECUTABLE"_ad"
2513 EXE_FTL=$EXECUTABLE"_ftl"
2514 EXE_SVD=$EXECUTABLE"_svd"
2515
2516 cat >>$MAKEFILE <<EOF
2517 #
2518 # OPTFILE="$OPTFILE"
2519 #
2520 # BUILDDIR : Directory where object files are written
2521 # SOURCEDIRS : Directories containing the source (.F) files
2522 # INCLUDEDIRS : Directories containing the header-source (.h) files
2523 # EXEDIR : Directory where executable that is generated is written
2524 # EXECUTABLE : Full path of executable binary
2525 #
2526 # CPP : C-preprocessor command
2527 # INCLUDES : Directories searched for header files
2528 # DEFINES : Macro definitions for CPP
2529 # MAKEDEPEND : Dependency generator
2530 # KPP : Special preprocessor command (specific to platform)
2531 # KFLAGS : Flags for KPP
2532 # FC : Fortran compiler command
2533 # FFLAGS : Configuration/debugging options for FC
2534 # FOPTIM : Optimization options for FC
2535 # LINK : Command for link editor program
2536 # LIBS : Library flags /or/ additional optimization/debugging flags
2537
2538 ROOTDIR = ${ROOTDIR}
2539 BUILDDIR = ${BUILDDIR}
2540 SOURCEDIRS = ${SOURCEDIRS}
2541 INCLUDEDIRS = ${INCLUDEDIRS}
2542 EXEDIR = ${EXEDIR}
2543 EXECUTABLE = \$(EXEDIR)/${EXECUTABLE}
2544 TOOLSDIR = ${TOOLSDIR}
2545
2546 #eh3 new defines for the adjoint work
2547 AUTODIFF = ${ROOTDIR}/pkg/autodiff
2548 EXE_AD = ${EXE_AD}
2549 EXE_FTL = ${EXE_FTL}
2550 EXE_SVD = ${EXE_SVD}
2551
2552 ENABLED_PACKAGES = ${ENABLED_PACKAGES}
2553 DISABLED_PACKAGES = ${DISABLED_PACKAGES}
2554
2555 # These files are created by Makefile
2556 SPECIAL_FILES = ${PACKAGES_DOT_H} AD_CONFIG.h FC_NAMEMANGLE.h BUILD_INFO.h
2557 EOF
2558
2559 if test "x$EMBED_SRC" = xt ; then
2560 echo "EMBEDDED_FILES = EMBEDDED_FILES.h" >>$MAKEFILE
2561 else
2562 echo "EMBEDDED_FILES = " >>$MAKEFILE
2563 fi
2564
2565 cat >>$MAKEFILE <<EOF
2566 # Unix ln (link)
2567 LN = ${LN}
2568 # C preprocessor
2569 CPP = cat \$< | ${S64} | ${CPP}
2570 # Dependency generator
2571 MAKEDEPEND = ${MAKEDEPEND}
2572 # Special preprocessor (KAP on DECs, FPP on Crays)
2573 KPP = ${KPP}
2574 # Fortran compiler
2575 FC = ${FC}
2576 # Fortran compiler
2577 F90C = ${F90C}
2578 # C compiler
2579 CC = ${CC}
2580 # Link editor
2581 LINK = ${LINK} ${LDADD}
2582
2583 # Defines for CPP
2584 DEFINES = ${DEFINES}
2585 # Includes for CPP
2586 INCLUDES = ${INCLUDES}
2587 # Flags for KPP
2588 KFLAGS1 = ${KFLAGS1}
2589 KFLAGS2 = ${KFLAGS2}
2590 # Optim./debug for FC
2591 FFLAGS = ${FFLAGS} ${FEXTRAFLAGS}
2592 FOPTIM = ${FOPTIM}
2593 # Optim./debug for FC
2594 F90FLAGS = ${F90FLAGS}
2595 F90OPTIM = ${F90OPTIM}
2596 F90FIXEDFORMAT = ${F90FIXEDFORMAT}
2597 # Flags for CC
2598 CFLAGS = ${CFLAGS}
2599 # Files that should not be optimized
2600 NOOPTFILES = ${NOOPTFILES}
2601 NOOPTFLAGS = ${NOOPTFLAGS}
2602 # Flags and libraries needed for linking
2603 LIBS = ${LIBS}
2604 # Name of the Mekfile
2605 MAKEFILE=${MAKEFILE}
2606
2607 EOF
2608
2609 cat F77srclist.tmp >> $MAKEFILE
2610 cat nonADF77srclist.tmp >> $MAKEFILE
2611 cat csrclist.tmp >> $MAKEFILE
2612 cat F90srclist.tmp >> $MAKEFILE
2613 cat hsrclist.tmp >> $MAKEFILE
2614 cat ad_flow_files.tmp >> $MAKEFILE
2615
2616 rm -f F77srclist.tmp nonADF77srclist.tmp csrclist.tmp F90srclist.tmp hsrclist.tmp ad_flow_files.tmp
2617
2618 echo >> $MAKEFILE
2619
2620 # add definitions for preprocessed sources
2621 # and note that not all systems allow case sensitive extensions
2622 # hence the $FS and $FS90 here.
2623 # for fixed format f90 files we use ff90 or FF90 resp
2624 # but these are not expected to be the original source files
2625
2626 echo 'F77_PP_SRC_FILES = $(F77_SRC_FILES:.F=.'$FS')' >> $MAKEFILE
2627 echo 'F90_PP_SRC_FILES = $(F90_SRC_FILES:.F90=.'$FS90')' >> $MAKEFILE
2628 echo 'OBJFILES= $(F77_SRC_FILES:.F=.o) $(C_SRC_FILES:.c=.o) $(F90_SRC_FILES:.F90=.o)' >> $MAKEFILE
2629 echo 'FLOFILES = $(AD_FLOW_FILES:.flow=.flowdir)' >> $MAKEFILE
2630 echo >> $MAKEFILE
2631 echo '.SUFFIXES:' >> $MAKEFILE
2632 echo '.SUFFIXES: .o .'$FS' .p .F .c .f'$FS90' .'$FS90' .FF90 .F90 .flowdir .flow' >> $MAKEFILE
2633
2634 cat >>$MAKEFILE <<EOF
2635
2636 all: \$(EXECUTABLE)
2637 \$(EXECUTABLE): \$(SPECIAL_FILES) \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) \$(OBJFILES) \$(EMBEDDED_FILES)
2638 @echo Creating \$@ ...
2639 \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) \$(LIBS)
2640 depend:
2641 @make links
2642 \$(MAKEDEPEND) -o .$FS \$(DEFINES) \$(INCLUDES) \$(F77_SRC_FILES)
2643 \$(TOOLSDIR)/f90mkdepend >> \$(MAKEFILE)
2644 -rm -f makedepend.out
2645
2646 lib: libmitgcmuv.a
2647
2648 libmitgcmuv.a: \$(OBJFILES)
2649 ar rcv libmitgcmuv.a \$(OBJFILES)
2650 ar d libmitgcmuv.a main.o
2651
2652 links: \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) \$(SPECIAL_FILES)
2653
2654 small_f: \$(F77_PP_SRC_FILES) \$(F90_PP_SRC_FILES)
2655
2656 output.txt: \$(EXECUTABLE)
2657 @printf 'running ... '
2658 @\$(EXECUTABLE) > \$@
2659
2660 clean:
2661 -rm -rf *.p *.$FS90 *.mod ${RMFILES} work.{pc,pcl} *.template
2662 -rm -rf *.o
2663 -rm -rf *.$FS *.flowdir
2664 -rm -rf *.f$FS90 \$(AD_CLEAN) ad_input*
2665 Clean:
2666 @make clean
2667 @make cleanlinks
2668 -rm -f \$(SPECIAL_FILES)
2669 -rm -f genmake_state genmake_*optfile genmake_warnings genmake_errors
2670 -rm -f make.log run.log f90mkdepend.log *.bak "$MAKEFILE.old"
2671 -rm -f taf_command taf_output taf_ad.log taf_ad_flow.log
2672 CLEAN:
2673 @make Clean
2674 -find \$(EXEDIR) -name "*.meta" -exec rm {} \;
2675 -find \$(EXEDIR) -name "*.data" -exec rm {} \;
2676 -find \$(EXEDIR) -name "fort.*" -exec rm {} \;
2677 -rm -f \$(EXECUTABLE) \$(EXE_AD) *.txt STD* *diagnostics.log datetime
2678 -rm -f *_MIT_CE_000.opt0000 costfunction*0000
2679 -rm -rf mnc_test_*
2680
2681 #eh3 Makefile: makefile
2682 makefile:
2683 $THIS_SCRIPT $G2ARGS
2684 cleanlinks:
2685 -find . -type l -exec rm {} \;
2686
2687 # Special targets (SPECIAL_FILES) which are created by make
2688 ${PACKAGES_DOT_H}:
2689 @echo Creating \$@ ...
2690 @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bPACKAGES_CONFIG_H "Disabled packages:" \$(DISABLED_PACKAGES) " " "Enabled packages:" \$(ENABLED_PACKAGES) > \$@
2691 AD_CONFIG.h:
2692 @echo Creating \$@ ...
2693 @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > \$@
2694 FC_NAMEMANGLE.h:
2695 @echo Creating \$@ ...
2696 echo "$FC_NAMEMANGLE" > \$@
2697
2698 BUILD_INFO.h:
2699 @echo Creating \$@ ...
2700 EOF
2701
2702 test ! "x$THISVER" = x && echo " -echo \"#define THISVER '$THISVER'\" > \$@" >> $MAKEFILE
2703 test ! "x$THISUSER" = x && echo " -echo \"#define THISUSER '$THISUSER'\" >> \$@" >> $MAKEFILE
2704 test ! "x$THISDATE" = x && echo " -echo \"#define THISDATE '$THISDATE'\" >> \$@" >> $MAKEFILE
2705 test ! "x$THISHOST" = x && echo " -echo \"#define THISHOST '$THISHOST'\" >> \$@" >> $MAKEFILE
2706
2707 if test "x$EMBED_SRC" = xt ; then
2708 cat >>$MAKEFILE <<EOF
2709
2710 decode_files.o : EMBEDDED_FILES.h
2711
2712 ## \$(F77_PP_SRC_FILES)
2713 all_fF.tar.gz : \$(SPECIAL_FILES) \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) \$(F77_PP_SRC_FILES) Makefile
2714 @echo Creating \$@ ...
2715 -tar -hcf all_fF.tar \$(SPECIAL_FILES) \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) \$(F77_PP_SRC_FILES) Makefile
2716 -rm -f all_fF.tar.gz
2717 -gzip all_fF.tar
2718
2719 EMBEDDED_FILES.h : all_fF.tar.gz
2720 @echo Creating \$@ ...
2721 -\${ROOTDIR}/tools/embed_encode/encode_files EMBEDDED_FILES.h all_fF.tar.gz
2722
2723 EOF
2724 fi
2725
2726 cat >>$MAKEFILE <<EOF
2727
2728 # The normal chain of rules is ( .F - .$FS - .o )
2729
2730 ## This nullifies any default implicit rules concerning these two file types:
2731 ## %.o : %.F
2732
2733 .F.$FS:
2734 \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@
2735 .$FS.o:
2736 \$(FC) \$(FFLAGS) \$(FOPTIM) -c \$<
2737 .F90.$FS90:
2738 \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@
2739 .FF90.f$FS90:
2740 \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@
2741 .$FS90.o:
2742 \$(F90C) \$(F90FLAGS) \$(F90OPTIM) -c \$<
2743 .f$FS90.o:
2744 cp \$< \$(basename \$<).f90
2745 \$(F90C) \$(F90FLAGS) \$(F90OPTIM) -c \$(F90FIXEDFORMAT) \$(basename \$<).f90
2746 .c.o:
2747 \$(CC) \$(CFLAGS) \$(DEFINES) \$(INCLUDES) -c \$<
2748 .flow.flowdir:
2749 \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@
2750
2751 # Special exceptions that use the ( .F - .p - .$FS - .o ) rule-chain
2752 .F.p:
2753 \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@
2754 .p.$FS:
2755 \$(KPP) \$(KFLAGS1)\$@ \$(KFLAGS2) \$<
2756
2757 EOF
2758
2759 #=========================================
2760 #=== Automatic Differentiation Rules ===
2761 #=== for TAMC/TAF ======================
2762
2763 if test "x$OPENAD" = x ; then
2764
2765 cat >>$MAKEFILE <<EOF
2766
2767 TAMC = ${TAMC}
2768 TAF = ${TAF}
2769
2770 TAF_EXTRA = ${TAF_EXTRA}
2771 TAMC_EXTRA = ${TAMC_EXTRA}
2772
2773 EOF
2774
2775 ad_vars="AD_TAMC_FLAGS AD_TAF_FLAGS"
2776 ad_vars="$ad_vars FTL_TAMC_FLAGS FTL_TAF_FLAGS"
2777 ad_vars="$ad_vars SVD_TAMC_FLAGS SVD_TAF_FLAGS"
2778 for i in $ad_vars ; do
2779 name=$i
2780 t1="t2=\$"`echo "$i"`
2781 eval $t1
2782 printf "%-20s = " $name >> $MAKEFILE
2783 echo "$t2" | sed -e 's| \+| |g' >> $MAKEFILE
2784 done
2785
2786 echo " Add the source list for AD code generation"
2787 echo >> $MAKEFILE
2788 printf "AD_FILES = " >> $MAKEFILE
2789 AD_FILES=`cat adSrcFiles.tmp`
2790 for i in $AD_FILES ; do
2791 echo " \\" >> $MAKEFILE
2792 printf " $i" >> $MAKEFILE
2793 done
2794 echo >> $MAKEFILE
2795 rm -f adSrcFiles.tmp
2796
2797 cat >>$MAKEFILE <<EOF
2798
2799 # ... AD ...
2800 adall: \$(EXE_AD)
2801 adtaf: ad_taf_output.$FS
2802 adtamc: ad_tamc_output.$FS
2803
2804 ad_input_code.$FS: \$(AD_FILES) \$(H_SRC_FILES) \$(AD_FLOW_FILES)
2805 @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -DALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ad_config.template
2806 cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
2807 -rm -f ad_config.template
2808 @make \$(F77_PP_SRC_FILES)
2809 @make \$(FLOFILES)
2810 cat \$(FLOFILES) \$(AD_FILES) | sed -f \$(TOOLSDIR)/remove_comments_sed > ad_input_code.$FS
2811
2812 ad_taf_output.$FS: ad_input_code.$FS
2813 \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.$FS
2814 ls -l ad_input_code_ad.$FS
2815 cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.$FS
2816
2817 adtafonly:
2818 \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.$FS
2819 ls -l ad_input_code_ad.$FS
2820 cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.$FS
2821
2822 \${EXE_AD}: ad_taf_output.o \$(OBJFILES)
2823 \$(LINK) -o \${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_taf_output.o \$(LIBS)
2824
2825 ad_tamc_output.$FS: ad_input_code.$FS
2826 \$(TAMC) \$(AD_TAMC_FLAGS) \$(TAMC_EXTRA) ad_input_code.$FS
2827 cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_tamc_output.$FS
2828
2829 ad_tamc: ad_tamc_output.o \$(OBJFILES)
2830 \$(LINK) -o ${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_tamc_output.o \$(LIBS)
2831
2832 adonlyfwd:
2833 patch < \$(TOOLSDIR)/ad_taf_output.f.onlyfwd.diff
2834
2835 adtrick:
2836 patch < \$(TOOLSDIR)/ad_taf_output.f.adtrick.diff
2837
2838 # ... FTL ...
2839 ftlall: ftl_taf
2840 ftltaf: ftl_taf_output.$FS
2841 ftltamc: ftl_tamc_output.$FS
2842
2843 ftl_input_code.$FS: \$(AD_FILES) \$(H_SRC_FILES)
2844 @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ftl_config.template
2845 cmp ftl_config.template AD_CONFIG.h || cat ftl_config.template > AD_CONFIG.h
2846 -rm -f ftl_config.template
2847 @make \$(F77_PP_SRC_FILES)
2848 @make \$(AD_FLOW_FILES)
2849 cat \$(AD_FLOW_FILES) \$(AD_FILES) > ftl_input_code.$FS
2850
2851 ftl_taf_output.$FS: ftl_input_code.$FS
2852 \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.$FS
2853 ls -l ftl_input_code_ftl.$FS
2854 cat ftl_input_code_ftl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.$FS
2855
2856 ftltafonly:
2857 \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.$FS
2858 ls -l ftl_input_code_ftl.$FS
2859 cat ftl_input_code_ftl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.$FS
2860
2861 ftl_taf: ftl_taf_output.o \$(OBJFILES)
2862 \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_taf_output.o \$(LIBS)
2863
2864 ftl_tamc_output.$FS: ftl_input_code.$FS
2865 \$(TAMC) \$(FTL_TAMC_FLAGS) \$(TAMC_EXTRA) ftl_input_code.$FS
2866 cat ftl_input_code_ftl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_tamc_output.$FS
2867
2868 ftl_tamc: ftl_tamc_output.o \$(OBJFILES)
2869 \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_tamc_output.o \$(LIBS)
2870
2871
2872 # ... SVD ...
2873 svdtaf: ad_taf_output.$FS ftl_taf_output.$FS
2874 @echo "--->>> Only ran TAF to generate SVD code! <<<---"
2875 @echo "--->>> Do make svdall afterwards to compile. <<<---"
2876 svdall: svd_touch svd_taf
2877
2878 svd_taf: \$(OBJFILES)
2879 \$(LINK) -o mitgcmuv_svd \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_taf_output.o ftl_taf_output.o \$(LIBS)
2880
2881 @echo "--->>> Only COMPILE svd code! <<<---"
2882 @echo "--->>> Assumes you previously <<<---"
2883 @echo "--->>> did make svdtaf <<<---"
2884
2885 svd_touch:
2886 @echo "--->>> Only COMPILE svd code! <<<---"
2887 @echo "--->>> Assumes you previously <<<---"
2888 @echo "--->>> did make svdtaf <<<---"
2889 touch ad_taf_output.$FS ftl_taf_output.$FS
2890 \$(FC) \$(FFLAGS) \$(FOPTIM) -c ad_taf_output.$FS
2891 \$(FC) \$(FFLAGS) \$(FOPTIM) -c ftl_taf_output.$FS
2892 @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ftl_config.template
2893 cmp ftl_config.template AD_CONFIG.h || cat ftl_config.template > AD_CONFIG.h
2894 -rm -f ftl_config.template
2895
2896 EOF
2897
2898 fi
2899
2900 #=== for OpenAD ========================
2901
2902 if test "x$OPENAD" != x ; then
2903
2904 # ============ begin OpenAD specific section ==============
2905
2906 cat >>$MAKEFILE <<EOF
2907
2908 # all the source files linked from the various locations:
2909 ALL_LINKED_FILES= \
2910 \$(F77_SRC_FILES) \
2911 \$(C_SRC_FILES) \
2912 \$(H_SRC_FILES) \
2913 \$(F90_SRC_FILES) \
2914 \$(SPECIAL_FILES)
2915
2916 ifndef OPENADROOT
2917 \$(error "Error: environment variable OPENADROOT not defined!")
2918 endif
2919
2920 ifndef XAIFSCHEMAROOT
2921 \$(error "Error: environment variable XAIFSCHEMAROOT not defined!")
2922 endif
2923
2924 ifndef XAIFBOOSTERROOT
2925 \$(error "Error: environment variable XAIFBOOSTERROOT not defined!")
2926 endif
2927
2928 EOF
2929
2930 echo " Add the source list for common block to module conversion "
2931 echo >> $MAKEFILE
2932 printf "CB2M_F90_SRC_NAMES = " >> $MAKEFILE
2933 for i in `cat ${OAD_CB2M_FILES}` ; do
2934 echo " \\" >> $MAKEFILE
2935 printf " $i" >> $MAKEFILE
2936 done
2937 echo >> $MAKEFILE
2938
2939 echo " Add the source list for AD code generation"
2940 echo >> $MAKEFILE
2941 printf "AD_FILES = " >> $MAKEFILE
2942 for i in `cat ${OAD_CB2M_FILES}` ; do
2943 echo " \\" >> $MAKEFILE
2944 printf " ${i}_mod.f$FS90" >> $MAKEFILE
2945 done
2946 AD_FILES=`cat adSrcFiles.tmp`
2947 for i in $AD_FILES ; do
2948 basename=${i%%.f}
2949 toBeIgnored=`egrep ^$basename'[ ]*' ${OAD_DONT_COMPILE} ${OAD_DONT_TRANSFORM}`
2950 if test -z "$toBeIgnored" ; then
2951 echo " \\" >> $MAKEFILE
2952 printf " $i" >> $MAKEFILE
2953 fi
2954 done
2955 echo >> $MAKEFILE
2956 rm -f adSrcFiles.tmp
2957
2958 cat >>$MAKEFILE <<EOF
2959
2960 adAll: \$(EXE_AD)
2961 .PHONY: adAll
2962
2963 CB2M_F90_PP_SRC_FILES=\$(addsuffix _mod.f$FS90, \$(CB2M_F90_SRC_NAMES))
2964
2965 .PRECIOUS: \$(CB2M_F90_PP_SRC_FILES) \$(NON_AD_F77_SRC_FILES:.F=_cb2m.f$FS90)
2966
2967 .PHONY: adDepend
2968 adDepend: \$(ALL_LINKED_FILES) \$(addsuffix _mod.h, \$(CB2M_F90_SRC_NAMES)) \$(addsuffix _mod.FF90, \$(CB2M_F90_SRC_NAMES)) \$(F77_SRC_FILES:.F=_cb2m.FF90)
2969 \$(MAKEDEPEND) -o .$FS \$(DEFINES) \$(INCLUDES) \$(F77_SRC_FILES)
2970 \$(TOOLSDIR)/f90mkdepend >> \$(MAKEFILE)
2971 -rm -f makedepend.out
2972
2973 OPENAD_SUPPORT_F90_SRC_FILES = \
2974 w2f__types.F90 \
2975 OAD_active.F90 \
2976 OAD_cp.F90 \
2977 OAD_rev.F90 \
2978 OAD_tape.F90
2979
2980 OPENAD_SUPPORT_C_SRC_FILES = \
2981 iaddr.c \
2982 timeRatio.c
2983
2984 f95_test_mods.f90: \$(OPENAD_SUPPORT_F90_SRC_FILES:F90=$FS90)
2985 cat \$^ > \$@
2986
2987 f95_test.f90: all_mods.xb.x2w.w2f.pp.f$FS90 \$(NON_AD_F77_SRC_FILES:.F=_cb2m.f$FS90) ad_input_code.w2f.pre.xb.x2w.w2f.td.pp.f$FS90
2988 cat \$^ > \$@
2989
2990 f95_test.out: f95_test_mods.f90 f95_test.f90
2991 f95 -fixed -w=unused -maxcontin=132 -c f95_test_mods.f90 > \$@ 2>&1
2992 f95 -fixed -w=unused -maxcontin=132 -c -fixed f95_test.f90 >> \$@ 2>&1
2993
2994 # the file included below is created by the
2995 # postProcessor and its inclusion sets the
2996 # variable POSTPROCESSEDFILES
2997 # used below. Because the file is made during
2998 # make it won't be read until the second (recursive)
2999 # invocation in the rule below
3000 -include postProcess.make
3001
3002 AD_OBJ_FILES_S1=\$(OPENAD_SUPPORT_F90_SRC_FILES:.F90=.o) \$(OPENAD_SUPPORT_C_SRC_FILES:.c=.o) \$(POSTPROCESSEDFILES:.f$FS90=.o)
3003
3004 AD_OBJ_FILES_S2=\$(AD_OBJ_FILES_S1) \$(NON_AD_F77_SRC_FILES:.F=_cb2m.o) \$(C_SRC_FILES:.c=.o) \$(F90_SRC_FILES:.F90=.o)
3005
3006 postProcess.comp: \$(ALL_LINKED_FILES) \$(addsuffix _mod.h, \$(CB2M_F90_SRC_NAMES)) postProcess.tag \$(AD_OBJ_FILES_S1)
3007 ifeq (\$(MAKELEVEL),0)
3008 \$(MAKE) adAll
3009 else
3010 touch \$@
3011 endif
3012
3013 \$(EXE_AD): \$(ALL_LINKED_FILES) \$(addsuffix _mod.h, \$(CB2M_F90_SRC_NAMES)) postProcess.comp \$(AD_OBJ_FILES_S2)
3014 ifeq (\$(MAKELEVEL),1)
3015 \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(AD_OBJ_FILES_S2) \$(LIBS)
3016 else
3017 touch \$@
3018 endif
3019
3020 # makefile debug rule
3021 openad: ad_input_code.w2f.pre.xb.x2w.w2f.td.pp.f$FS90
3022 .PHONY: openad
3023
3024 # create the module files
3025 %_mod.FF90 : %.h ../OAD_support/cb2mGetModules.csh ../OAD_support/cb2mGetModules.awk
3026 ../OAD_support/cb2mGetModules.csh $< ../OAD_support/cb2mGetModules.awk
3027
3028 # create the header files
3029 %_mod.h : %.h ../OAD_support/cb2mGetHeaders.csh ../OAD_support/cb2mGetHeaders.awk
3030 ../OAD_support/cb2mGetHeaders.csh $< ../OAD_support/cb2mGetHeaders.awk \$(CB2M_F90_SRC_NAMES)
3031
3032 # change everybody else to use the new module files:
3033 %_cb2m.FF90 : %.F ../OAD_support/cb2mUseModules.bash
3034 ../OAD_support/cb2mUseModules.bash $< ${MPI}
3035
3036 # makefile debug rule
3037 small_f: \$(CB2M_F90_PP_SRC_FILES)
3038 .PHONY: small_f
3039
3040 ad_output.txt: \$(EXE_AD)
3041 @printf 'linking data files ... '
3042 \$(LN) -f ../input_ad/data* ../input_ad/eedata .
3043 \$(LN) -f ../../global_ocean.90x40x15/input/*.bin .
3044 @printf 'running ... '
3045 @./\$(EXE_AD) > \$@
3046
3047 CB2M_AD_FILES=\$(AD_FILES:.f=_cb2m.f$FS90)
3048 ad_input_code.f$FS90: \$(CB2M_AD_FILES)
3049 cat \$^ > \$@
3050
3051 # strip all comments and blanks to reduce
3052 # the file size in order to reduce perl's memory requirements
3053 ad_input_code_sf.f$FS90 : ad_input_code.f$FS90
3054 cat \$^ | sed -f ../OAD_support/strip.sed | sed -f ../OAD_support/stop2print.sed > \$@
3055
3056 # mfef90 preprocessing
3057 # expand statement functions
3058 # expose mfef90 specific substring handling
3059 # add the w2f__types module
3060 ad_input_code_sf.w2f.f$FS90: ad_input_code_sf.f$FS90 mfef90 whirl2f whirl2f_be w2f__types.f90
3061 ./mfef90 -r8 -z -F -N132 \$<
3062 mv \$<.B \$(basename \$<).B
3063 ./whirl2f -openad \$(basename \$<).B
3064 cat w2f__types.f90 \$(basename \$<).w2f.f > \$@
3065
3066 # canonicalizer
3067 ad_input_code_sf.w2f.pre.f$FS90: ad_input_code_sf.w2f.f$FS90 preProcess.py
3068 ./preProcess.py --timing --r8 -H -S \$< -o \$@
3069
3070 # F -> WHIRL
3071 # note that the canonicalized version cuts off at col 72
3072 # doing this also for string constants which is ok as long
3073 # as we are in fixed mode and cut of exactly there.
3074 # Otherwise mfef90 patches in spaces to fill up to 72 (or 132)
3075 # characters respectively.
3076 ad_input_code_sf.w2f.pre.B: ad_input_code_sf.w2f.pre.f$FS90 mfef90
3077 ./mfef90 -r8 -z -F \$<
3078 mv \$<.B \$@
3079
3080 # WHIRL -> XAIF
3081 ad_input_code_sf.w2f.pre.xaif : ad_input_code_sf.w2f.pre.B whirl2xaif
3082 ./whirl2xaif -s -n --debug 1 -o \$@ \$<
3083
3084 # XAIF -> XAIF'
3085 ad_input_code_sf.w2f.pre.xb.xaif : ad_input_code_sf.w2f.pre.xaif xaif.xsd xaif_base.xsd xaif_inlinable_intrinsics.xsd xaif_derivative_propagator.xsd xaif_output.xsd oadDriver
3086 ./oadDriver -f -t forward_step -i \$< -c \${XAIFSCHEMAROOT}/schema/examples/inlinable_intrinsics.xaif -o \$@ -I -r
3087
3088 # XAIF' -> WHIRL'
3089 ad_input_code_sf.w2f.pre.xb.x2w.B : ad_input_code_sf.w2f.pre.xb.xaif xaif2whirl
3090 ./xaif2whirl --debug 1 ad_input_code_sf.w2f.pre.B \$<
3091
3092 # WHIRL' -> F'
3093 ad_input_code_sf.w2f.pre.xb.x2w.w2f.f$FS90: ad_input_code_sf.w2f.pre.xb.x2w.B whirl2f whirl2f_be
3094 ./whirl2f -FLIST:ftn_file=\$@ -openad \$<
3095
3096 # insert template directives
3097 ad_input_code_sf.w2f.pre.xb.x2w.w2f.td.f$FS90: ad_input_code_sf.w2f.pre.xb.x2w.w2f.f$FS90 ../OAD_support/insertTemplateDir.bash
3098 ../OAD_support/insertTemplateDir.bash \$< \$@
3099
3100 PPEXTRAS=\$(wildcard ../OAD_support/ad_template.*.F) ../OAD_support/ad_inline.F
3101 # postprocess F'
3102 postProcess.tag: ad_input_code_sf.w2f.pre.xb.x2w.w2f.td.f$FS90 postProcess.py \$(PPEXTRAS:.F=.f)
3103 # the target is a placeholder to signal execution of the rule
3104 touch \$@
3105 # this step also creates the file postProcess.make but we cannot
3106 # name it as the target or else make will try to remake it for
3107 # the include directive above for any rule, e.g. make clean
3108 ./postProcess.py --progress --timing --outputFormat=fixed -m r -i ../OAD_support/ad_inline.f --width 4 \$<
3109
3110 # setup some links
3111 %.xsd:
3112 \$(LN) \${XAIFSCHEMAROOT}/schema/\$@ .
3113
3114 mfef90:
3115 \$(LN) \${OPEN64ROOT}/crayf90/sgi/mfef90 .
3116
3117 # link the support files:
3118 \$(OPENAD_SUPPORT_F90_SRC_FILES) \$(OPENAD_SUPPORT_C_SRC_FILES):
3119 \$(LN) ../OAD_support/\$@ .
3120
3121 whirl2xaif xaif2whirl:
3122 \$(LN) \${OPENADFORTTK}/bin/\$@ .
3123
3124 preProcess.py postProcess.py:
3125 \$(LN) \${OPENADFORTTK_BASE}/tools/SourceProcessing/\$@ .
3126
3127 whirl2f whirl2f_be:
3128 \$(LN) \${OPEN64ROOT}/whirl2f/\$@ .
3129
3130 oadDriver:
3131 \$(LN) \${XAIFBOOSTERROOT}/xaifBooster/algorithms/BasicBlockPreaccumulationReverse/driver/oadDriver \$@
3132
3133 AD_CLEAN += *_mod.h *_mod.F90 *.FF90 *.mod-whirl temp.sed oad_cp.* postProcess.make postProcess.tag postProcess.comp \$(PPEXTRAS:.F=.f)
3134
3135 # ============ end OpenAD specific section ==============
3136
3137 EOF
3138
3139 fi
3140
3141 #=========================================
3142
3143 if test "x$EXEHOOK" != x ; then
3144 printf "\nexehook:\n\t%s\n" $EXEHOOK >> $MAKEFILE
3145 fi
3146
3147 echo " Making list of \"exceptions\" that need \".p\" files"
3148 for i in $KPPFILES ; do
3149 base=`echo $i | sed -e 's/\/.*\///g' | sed -e 's/\..*$//g'`
3150 RETVAL=$?
3151 if test "x$RETVAL" != x0 ; then
3152 echo "Error: unable to add file \"$i\" to the exceptions list"
3153 fi
3154 echo "$base.$FS: $base.p" >> $MAKEFILE
3155 done
3156
3157 echo " Making list of NOOPTFILES"
3158 for i in $NOOPTFILES ; do
3159 base=`echo $i | sed -e 's/\/.*\///g' | sed -e 's/\..*$//g'`
3160 RETVAL=$?
3161 if test "x$RETVAL" != x0 ; then
3162 echo "Error: unable to add file \"$i\" to the exceptions list"
3163 fi
3164 echo "$base.o: $base.$FS" >> $MAKEFILE
3165 printf "\t\$(FC) \$(FFLAGS) \$(NOOPTFLAGS) -c \$<\n" >> $MAKEFILE
3166 done
3167
3168 echo " Add rules for links"
3169 cat srclinks.tmp >> $MAKEFILE
3170 rm -f srclinks.tmp
3171
3172 echo " Adding makedepend marker"
3173 printf "\n\n# DO NOT DELETE\n" >> $MAKEFILE
3174
3175 printf "\n=== Done ===\n"
3176
3177 # Create special header files
3178 $BASH $TOOLSDIR/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bPACKAGES_CONFIG_H "Disabled packages:" $DISABLED_PACKAGES " " "Enabled packages:" $ENABLED_PACKAGES > $PACKAGES_DOT_H".tmp"
3179 if test ! -f $PACKAGES_DOT_H ; then
3180 mv -f $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H
3181 else
3182 cmp $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H > /dev/null 2>&1
3183 RETVAL=$?
3184 if test "x$RETVAL" = x0 ; then
3185 rm -f $PACKAGES_DOT_H".tmp"
3186 else
3187 mv -f $PACKAGES_DOT_H $PACKAGES_DOT_H".bak"
3188 mv -f $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H
3189 fi
3190 fi
3191 if test ! -f AD_CONFIG.h ; then
3192 $BASH $TOOLSDIR/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > AD_CONFIG.h
3193 fi
3194
3195
3196 # Write the "state" for future records
3197 if test "x$DUMPSTATE" != xf ; then
3198 printf "" > genmake_state
3199 for i in $gm_state ; do
3200 t1="t2=\$$i"
3201 eval $t1
3202 echo "$i='$t2'" >> genmake_state
3203 done
3204 fi

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