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revision 1.98 by edhill, Tue Sep 7 21:28:47 2004 UTC revision 1.244 by jmc, Wed Oct 10 22:24:59 2012 UTC
# Line 1  Line 1 
1  #! /usr/bin/env bash  #! /usr/bin/env bash
2  #  #
3  # $Header$  # $Header$
4    # $Name$
5  #  #
6  # Makefile generator for MITgcm UV codes  # Makefile generator for MITgcm UV codes
7  #   created  by cnh 03/98  #   created  by cnh 03/98
# Line 8  Line 9 
9  #   modified by aja 01/00  #   modified by aja 01/00
10  #   rewritten in bash by eh3 08/03  #   rewritten in bash by eh3 08/03
11    
12    #  Explain usage
13    usage()  {
14    cat <<EOF
15    
16    Usage: "$0" [OPTIONS]
17      where [OPTIONS] can be:
18    
19        -help | --help | -h | --h
20              Print this help message and exit.
21    
22        -adoptfile NAME | --adoptfile NAME | -adof NAME | --adof NAME
23          -adoptfile=NAME | --adoptfile=NAME | -adof=NAME | --adof=NAME
24              Use "NAME" as the adoptfile.  By default, the file at
25              "tools/adjoint_options/adjoint_default" will be used.
26    
27        -nooptfile | --nooptfile
28          -optfile NAME | --optfile NAME | -of NAME | --of NAME
29          -optfile=NAME | --optfile=NAME | -of=NAME | --of=NAME
30              Use "NAME" as the optfile.  By default, an attempt will be
31              made to find an appropriate "standard" optfile in the
32              tools/build_options/ directory.
33    
34        -pdepend NAME | --pdepend NAME
35          -pdepend=NAME | --pdepend=NAME
36              Get package dependency information from "NAME".
37    
38        -pgroups NAME | --pgroups NAME
39          -pgroups=NAME | --pgroups=NAME
40              Get the package groups information from "NAME".
41    
42        -bash NAME
43              Explicitly specify the Bourne or BASH shell to use
44    
45        -make NAME | -m NAME
46          --make=NAME | -m=NAME
47              Use "NAME" for the MAKE program. The default is "make" but
48              many platforms, "gmake" is the preferred choice.
49    
50        -makefile NAME | -mf NAME
51          --makefile=NAME | -mf=NAME
52              Call the makefile "NAME".  The default is "Makefile".
53    
54        -makedepend NAME | -md NAME
55          --makedepend=NAME | -md=NAME
56              Use "NAME" for the MAKEDEPEND program.
57    
58        -rootdir NAME | --rootdir NAME | -rd NAME | --rd NAME
59          -rootdir=NAME | --rootdir=NAME | -rd=NAME | --rd=NAME
60              Specify the location of the MITgcm ROOTDIR as "NAME".
61              By default, genamke will try to find the location by
62              looking in parent directories (up to the 5th parent).
63    
64        -mods NAME | --mods NAME | -mo NAME | --mo NAME
65          -mods=NAME | --mods=NAME | -mo=NAME | --mo=NAME
66              Here, "NAME" specifies a list of directories that are
67              used for additional source code.  Files found in the
68              "mods list" are given preference over files of the same
69              name found elsewhere.
70    
71        -disable NAME | --disable NAME
72          -disable=NAME | --disable=NAME
73              Here "NAME" specifies a list of packages that we don't
74              want to use.  If this violates package dependencies,
75              genamke will exit with an error message.
76    
77        -enable NAME | --enable NAME
78          -enable=NAME | --enable=NAME
79              Here "NAME" specifies a list of packages that we wish
80              to specifically enable.  If this violates package
81              dependencies, genamke will exit with an error message.
82    
83        -standarddirs NAME | --standarddirs NAME
84          -standarddirs=NAME | --standarddirs=NAME
85              Here, "NAME" specifies a list of directories to be
86              used as the "standard" code.
87    
88        -fortran NAME | --fortran NAME | -fc NAME | --fc NAME
89          -fc=NAME | --fc=NAME
90              Use "NAME" as the fortran compiler.  By default, genmake
91              will search for a working compiler by trying a list of
92              "usual suspects" such as g77, f77, etc.
93    
94        -cc NAME | --cc NAME | -cc=NAME | --cc=NAME
95              Use "NAME" as the C compiler.  By default, genmake
96              will search for a working compiler by trying a list of
97              "usual suspects" such as gcc, c89, cc, etc.
98    
99        -use_real4 | -use_r4 | -ur4 | --use_real4 | --use_r4 | --ur4
100              Use "real*4" type for _RS variable (#undef REAL4_IS_SLOW)
101              *only* works if CPP_EEOPTIONS.h allows this.
102    
103        -ignoretime | -ignore_time | --ignoretime | --ignore_time
104              Ignore all the "wall clock" routines entirely.  This will
105              not in any way hurt the model results -- it simply means
106              that the code that checks how long the model spends in
107              various routines will give junk values.
108    
109        -ts | --ts
110              Produce timing information per timestep
111        -papis | --papis
112              Produce summary MFlop/s (and IPC) with PAPI per timestep
113        -pcls | --pcls
114              Produce summary MFlop/s etc. with PCL per timestep
115        -foolad | --foolad
116              Fool the AD code generator
117        -papi | --papi
118              Performance analysis with PAPI
119        -pcl | --pcl
120              Performance analysis with PCL
121        -hpmt | --hpmt
122              Performance analysis with the HPM Toolkit
123    
124        -ieee | --ieee
125              use IEEE numerics.  Note that this option *only* works
126              if it is supported by the OPTFILE that is being used.
127        -devel | --devel
128              Add additional warning and debugging flags for development
129              (if supported by the OPTFILE); also switch to IEEE numerics.
130        -gsl | --gsl
131              Use GSL to control floating point rounding and precision
132    
133        -mpi | --mpi
134              Include MPI header files and link to MPI libraries
135        -mpi=PATH | --mpi=PATH
136              Include MPI header files and link to MPI libraries using MPI_ROOT
137              set to PATH. i.e. Include files from \$PATH/include, link to libraries
138              from \$PATH/lib and use binaries from \$PATH/bin.
139    
140        -omp | --omp
141              Activate OpenMP code + use Compiler option OMPFLAG
142        -omp=OMPFLAG | --omp=OMPFLAG
143              Activate OpenMP code + use Compiler option OMPFLAG
144    
145        -es | --es | -embed-source | --embed-source
146              Embed a tarball containing the full source code
147              (including the Makefile, etc.) used to build the
148              executable [off by default]
149    
150        -ds | --ds
151              Report genmake internal variables status (DUMPSTATE)
152              to file "genmake_state" (for debug purpose)
153    
154      While it is most often a single word, the "NAME" variables specified
155      above can in many cases be a space-delimited string such as:
156    
157        --enable pkg1   --enable 'pkg1 pkg2'   --enable 'pkg1 pkg2 pkg3'
158        -mods=dir1   -mods='dir1'   -mods='dir1 dir2 dir3'
159        -foptim='-Mvect=cachesize:512000,transform -xtypemap=real:64,double:64,integer:32'
160    
161      which, depending upon your shell, may need to be single-quoted.
162    
163      For more detailed genmake documentation, please see:
164    
165        http://mitgcm.org/public/devel_HOWTO/
166    
167    EOF
168    
169        exit 1
170    }
171    
172  # Search for particular CPP #cmds associated with packages  # Search for particular CPP #cmds associated with packages
173  # usage: test_for_package_in_cpp_options CPP_file package_name  # usage: test_for_package_in_cpp_options CPP_file package_name
174  test_for_package_in_cpp_options() {  test_for_package_in_cpp_options() {
175      cpp_options=$1      cpp_options=$1
176      pkg=$2      pkg=$2
177      test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_$pkg" || exit 99      test_for_string_in_file $cpp_options "^ *# *define *\<ALLOW_$pkg\>"
178      test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_$pkg" || exit 99      test_for_string_in_file $cpp_options "^ *# *undef *\<ALLOW_$pkg\>"
179      test_for_string_in_file $cpp_options "^[ ]*#define.*DISABLE_$pkg" || exit 99      test_for_string_in_file $cpp_options "^ *# *define *\<DISABLE_$pkg\>"
180      test_for_string_in_file $cpp_options "^[ ]*#undef.*DISABLE_$pkg" || exit 99      test_for_string_in_file $cpp_options "^ *# *undef *\<DISABLE_$pkg\>"
181  }  }
182    
183  # Search for particular CPP #cmds associated with MPI  # Search for particular CPP #cmds associated with MPI
184  # usage: test_for_mpi_in_cpp_eeoptions CPP_file  # usage: test_for_mpi_in_cpp_eeoptions CPP_file
185  test_for_mpi_in_cpp_eeoptions() {  test_for_mpi_in_cpp_eeoptions() {
186      cpp_options=$1      cpp_options=$1
187      test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_USE_MPI" || exit 99      test_for_string_in_file $cpp_options "^ *# *define *\<ALLOW_USE_MPI\>"
188      test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_USE_MPI" || exit 99      test_for_string_in_file $cpp_options "^ *# *undef *\<ALLOW_USE_MPI\>"
     test_for_string_in_file $cpp_options "^[ ]*#define.*ALWAYS_USE_MPI" || exit 99  
     test_for_string_in_file $cpp_options "^[ ]*#undef.*ALWAYS_USE_MPI" || exit 99  
189  }  }
190    
191  # Search for particular string in a file. Return 1 if detected, 0 if not  # Search for particular string in a file. Return 1 if detected, 0 if not
# Line 34  test_for_mpi_in_cpp_eeoptions() { Line 193  test_for_mpi_in_cpp_eeoptions() {
193  test_for_string_in_file() {  test_for_string_in_file() {
194      file=$1      file=$1
195      strng=$2      strng=$2
196      grep -i "$strng" $file > /dev/null 2>&1      grep "$strng" $file > /dev/null 2>&1
197      RETVAL=$?      RETVAL=$?
198      if test "x${RETVAL}" = x0 ; then      if test "x${RETVAL}" = x0 ; then
199          printf "Error: In $file there is an illegal line: "          printf "Error: In $file there is an illegal line: "
200          grep -i "$strng" $file          grep -i "$strng" $file
201          return 1          exit 99
202      fi      fi
203      return 0      return 0
204  }  }
# Line 48  test_for_string_in_file() { Line 207  test_for_string_in_file() {
207  # the package list.  # the package list.
208  expand_pkg_groups() {  expand_pkg_groups() {
209      new_packages=      new_packages=
     PKG_GROUPS=$ROOTDIR"/pkg/pkg_groups"  
210      if test -r $PKG_GROUPS ; then      if test -r $PKG_GROUPS ; then
211          cat $PKG_GROUPS | sed -e 's/#.*$//g' | sed -e 's/:/ : /g' > ./p1.tmp          cat $PKG_GROUPS | sed -e 's/#.*$//g' | sed -e 's/:/ : /g' > ./p1.tmp
212          cat ./p1.tmp | $AWK '(NF>2 && $2==":"){ print $0 }' > ./p2.tmp          cat ./p1.tmp | $AWK '(NF>2 && $2==":"){ print $0 }' > ./p2.tmp
# Line 59  expand_pkg_groups() { Line 217  expand_pkg_groups() {
217              if test "x$RETVAL" = x0 ; then              if test "x$RETVAL" = x0 ; then
218                  matched=1                  matched=1
219                  replace=`echo $line | $AWK '{ $1=""; $2=""; print $0 }'`                  replace=`echo $line | $AWK '{ $1=""; $2=""; print $0 }'`
220                  echo "    replacing \"$i\" with: $replace"                  echo "    replacing \"$i\" with:$replace"
221                  new_packages="$new_packages $replace"                  new_packages="$new_packages $replace"
222              else              else
223                  new_packages="$new_packages $i"                  new_packages="$new_packages $i"
# Line 102  EOF Line 260  EOF
260              check_for_broken_Ff              check_for_broken_Ff
261          else          else
262              cat <<EOF 2>&1              cat <<EOF 2>&1
263  ERROR: Your file system cannot distinguish between *.F and *.f files  ERROR: Your file system cannot distinguish between *.F and *.f files
264    (fails the "cp" test) and this program cannot find a suitable    (fails the "cp" test) and this program cannot find a suitable
265    replacement extension.  Please try a different build environment or    replacement extension.  Please try a different build environment or
266    contact the <MITgcm-support@mitgcm.org> list for help.    contact the <MITgcm-support@mitgcm.org> list for help.
267    
268  EOF  EOF
# Line 122  EOF Line 280  EOF
280        stop        stop
281        end        end
282  EOF  EOF
283      test -f Makefile  &&  mv -f Makefile Makefile.bak      test -f $MAKEFILE  &&  mv -f $MAKEFILE $MAKEFILE".tst"
284      cat <<EOF >> Makefile      cat <<EOF >> $MAKEFILE
 %.$tfs : %.F  
285  .SUFFIXES:  .SUFFIXES:
286  genmake_hello.$tfs: genmake_hello.F  .SUFFIXES: .$tfs .F
287          $LN genmake_hello.F genmake_hello.$tfs  .F.$tfs:
288            $LN \$< \$@
289  EOF  EOF
290      $MAKE "genmake_hello."$tfs > /dev/null 2>&1      $MAKE -f $MAKEFILE "genmake_hello."$tfs > /dev/null 2>&1
291      RETVAL=$?      RETVAL=$?
292      if test "x$RETVAL" != x0 -o ! -f "genmake_hello."$tfs ; then      if test "x$RETVAL" != x0 -o ! -f "genmake_hello."$tfs ; then
293          if test "x$FS" = x ; then          if test "x$FS" = x ; then
# Line 137  EOF Line 295  EOF
295              FS90='fr9'              FS90='fr9'
296              check_for_broken_Ff              check_for_broken_Ff
297          else          else
298              cat <<EOF 2>&1              echo "ERROR: test: '$MAKE -f $MAKEFILE genmake_hello.$tfs' Failed"
299  ERROR: Your file system cannot distinguish between *.F and *.f files              echo "       see simple makefile: '$MAKEFILE' (left here)"
300    (fails the "make/ln" test) and this program cannot find a suitable              echo "  Please check (1) your '$MAKE' command, (2) your '$LN' command"
301    replacement extension.  Please try a different build environment or              echo "           and (3) the allowed sufix '.F' and '.$tfs' in makefile"
302    contact the <MITgcm-support@mitgcm.org> list for help.              echo "  or contact the <MITgcm-support@mitgcm.org> list for help."
303                echo ""
 EOF  
304              exit -1              exit -1
305              return              return
306          fi          fi
307      fi      fi
308      rm -f genmake_hello.* Makefile      rm -f genmake_hello.* $MAKEFILE
309      test -f Makefile  &&  mv -f Makefile.bak Makefile      test -f $MAKEFILE".tst"  &&  mv -f $MAKEFILE".tst" $MAKEFILE
310    
311      #  If we make it here, use the extensions      #  If we make it here, use the extensions
312      FS=$tfs      FS=$tfs
# Line 157  EOF Line 314  EOF
314      return      return
315  }  }
316    
   
317  look_for_makedepend()  {  look_for_makedepend()  {
318    
319      #  The "original" makedepend is part of the Imake system that is      #  The "original" makedepend is part of the Imake system that is
# Line 178  look_for_makedepend()  { Line 334  look_for_makedepend()  {
334      #    3) locally build and use the cyrus implementation      #    3) locally build and use the cyrus implementation
335      #    4) fall back to the buggy local xmakedpend script      #    4) fall back to the buggy local xmakedpend script
336      #      #
337        echo >> $LOGFILE
338        echo "running: look_for_makedepend()" >> $LOGFILE
339        if test "x${MAKEDEPEND}" != x ; then
340            echo "${MAKEDEPEND}" | grep -i cyrus > /dev/null 2>&1
341            RETVAL=$?
342            if test x"$RETVAL" = x0 ; then
343                build_cyrus_makedepend
344                RETVAL=$?
345                if test "x$RETVAL" != x0 ; then
346                    echo "WARNING: unable to build cyrus-makedepend. Try 'makedepend'"
347                    MAKEDEPEND=
348                fi
349            else
350                echo "${MAKEDEPEND}" | grep 'tools.xmakedepend' > /dev/null 2>&1
351                RETVAL=$?
352                if test "x$RETVAL" = x0 ; then
353                    MAKEDEPEND='$(TOOLSDIR)/xmakedepend'
354                fi
355                echo " -->     MAKEDEPEND=${MAKEDEPEND}" >> $LOGFILE
356            fi
357        fi
358      if test "x${MAKEDEPEND}" = x ; then      if test "x${MAKEDEPEND}" = x ; then
359          which makedepend > /dev/null 2>&1          which makedepend > /dev/null 2>&1
360          RV0=$?          RV0=$?
361            test -f $MAKEFILE  &&  mv -f $MAKEFILE $MAKEFILE".tst"
362            #  echo 'MAKEFILE="'$MAKEFILE'"'
363            cat <<EOF >> $MAKEFILE
364    #   THIS IS A TEST MAKEFILE GENERATED BY "genmake2"
365    #
366    #   Some "makedepend" implementations will die if they cannot
367    #   find a Makefile -- so this file is here to gives them an
368    #   empty one to find and parse.
369    EOF
370          cat <<EOF >> genmake_tc.f          cat <<EOF >> genmake_tc.f
371        program test        program test
372        write(*,*) 'test'        write(*,*) 'test'
373        stop        stop
374        end        end
375  EOF  EOF
376          makedepend genmake_tc.f > /dev/null 2>&1          makedepend -f $MAKEFILE genmake_tc.f > /dev/null 2>&1
377          RV1=$?          RV1=$?
378            test -f $MAKEFILE  &&  rm -f $MAKEFILE
379            test -f $MAKEFILE".tst"  &&  mv -f $MAKEFILE".tst" $MAKEFILE
380          if test "x${RV0}${RV1}" = x00 ; then          if test "x${RV0}${RV1}" = x00 ; then
381              MAKEDEPEND=makedepend              MAKEDEPEND=makedepend
382                echo " --> set MAKEDEPEND=${MAKEDEPEND}" >> $LOGFILE
383          else          else
384              echo "    a system-default makedepend was not found."              echo "    system-default makedepend not found. Try to build cyrus-makedepend"
               
385              #  Try to build the cyrus implementation              #  Try to build the cyrus implementation
386              build_cyrus_makedepend              build_cyrus_makedepend
387              RETVAL=$?              RETVAL=$?
388              if test "x$RETVAL" != x0 ; then              if test "x$RETVAL" != x0 ; then
389                    echo "WARNING: unable to build cyrus-makedepend. Use local xmakedepend"
390                  MAKEDEPEND='$(TOOLSDIR)/xmakedepend'                  MAKEDEPEND='$(TOOLSDIR)/xmakedepend'
391                    echo " --> set MAKEDEPEND=${MAKEDEPEND}" >> $LOGFILE
392              fi              fi
             rm -f ./genmake_cy_md  
         fi  
     else  
         #  echo "MAKEDEPEND=${MAKEDEPEND}"  
         echo "${MAKEDEPEND}" | grep -i cyrus > /dev/null 2>&1  
         RETVAL=$?  
         if test x"$RETVAL" = x0 ; then  
             build_cyrus_makedepend  
393          fi          fi
394      fi      fi
395  }  }
396    
   
397  build_cyrus_makedepend()  {  build_cyrus_makedepend()  {
398        echo >> $LOGFILE
399        echo "running: build_cyrus_makedepend()" >> $LOGFILE
400      rm -f ./genmake_cy_md      rm -f ./genmake_cy_md
401      (      (
402          cd $ROOTDIR/tools/cyrus-imapd-makedepend  \          cd $ROOTDIR/tools/cyrus-imapd-makedepend  \
403              &&  ./configure > /dev/null 2>&1  \              &&  ./configure > /dev/null 2>&1  \
404              &&  make > /dev/null 2>&1              &&  $MAKE > /dev/null 2>&1
405          if test -x ./makedepend.exe ; then          if test -x ./makedepend.exe ; then
406              $LN ./makedepend.exe ./makedepend              $LN ./makedepend.exe ./makedepend
407          fi          fi
# Line 230  build_cyrus_makedepend()  { Line 413  build_cyrus_makedepend()  {
413      rm -f ./genmake_cy_md      rm -f ./genmake_cy_md
414      if test "x$RETVAL" = x0 ; then      if test "x$RETVAL" = x0 ; then
415          MAKEDEPEND='$(TOOLSDIR)/cyrus-imapd-makedepend/makedepend'          MAKEDEPEND='$(TOOLSDIR)/cyrus-imapd-makedepend/makedepend'
416            echo " --> set MAKEDEPEND=${MAKEDEPEND}" >> $LOGFILE
417          return 0          return 0
418      else      else
419          echo "WARNING: unable to build cyrus-imapd-makedepend"          echo "WARNING: fail to build cyrus-imapd-makedepend" >> $LOGFILE
420          return 1          return 1
421      fi      fi
422  }  }
423    
424  # Guess possible config options for this host  build_embed_encode()
425  find_possible_configs()  {  {
426        printf "  building the embed-encode utility...  "
427      tmp1=`uname`"_"`uname -m`      if test ! -e "$ROOTDIR/tools/embed_encode/encode_files" ; then
428      tmp2=`echo $tmp1 | sed -e 'y/ABCDEFGHIJKLMNOPQRSTUVWXYZ/abcdefghijklmnopqrstuvwxyz/'`          if test ! -d "$ROOTDIR/tools/embed_encode" ; then
429      tmp3=`echo $tmp2 | sed -e 's/power macintosh/ppc/'`              echo
430      tmp1=`echo $tmp3 | sed -e 's|x86_64|amd64|'`              echo "    Error: can't locate \"$ROOTDIR/tools/embed_encode\""
431      tmp2=`echo $tmp1 | sed -e 's/i[3-6]86/ia32/' | sed -e 's/athlon/ia32/'`              echo
432      tmp3=`echo $tmp2 | sed -e 's/cray sv1/craysv1/'`              EMBED_SRC=f
433      PLATFORM=$tmp3              return 1
434      echo $PLATFORM | grep cygwin > /dev/null 2>&1  &&  PLATFORM=cygwin_ia32          fi
435      OFLIST=`(cd $ROOTDIR/tools/build_options; ls | grep "^$PLATFORM")`          clist="cc gcc c89 $CC"
436      echo "  The platform appears to be:  $PLATFORM"          for ic in $clist ; do
437                    comm="$ic -o encode_files encode_files.c"
438      echo "test" > test              ( cd $ROOTDIR/tools/embed_encode && $comm ) > /dev/null 2>&1
439      ln -s ./test link              RETVAL=$?
440      RETVAL=$?              if test "x$RETVAL" = x0 ; then
441      if test "x${RETVAL}" = x0 ; then                  echo "OK"
442          LN="ln -s"                  return 0
443      else              fi
444          echo "Error: \"ln -s\" does not appear to work on this system!"          done
445          echo "  For help, please contact <MITgcm-support@mitgcm.org>."          echo
446          exit 1          echo "    Error: unable to build $ROOTDIR/embed_encode/encode_files"
447      fi          echo "      so it has been disabled"
448      rm -f test link          echo
449            EMBED_SRC=f
450      if test "x$CPP" = x ; then          return 1
         CPP="cpp -traditional -P"  
451      fi      fi
452        echo "OK"
453    }
454    
455      look_for_makedepend  #  look for possible C compilers
456    look_for_C_compilers() {
457      #================================================================      echo >> $LOGFILE
458      #  look for possible C compilers      echo "running: look_for_C_compilers()" >> $LOGFILE
459      tmp="$MITGCM_CC $CC gcc c89 cc c99 mpicc"      rm -f ./genmake_hello.c  ./genmake_hello
460      p_CC=      cat >> genmake_hello.c << EOF
     for c in $tmp ; do  
         rm -f ./genmake_hello.c  ./genmake_hello  
         cat >> genmake_hello.c << EOF  
461  #include <stdio.h>  #include <stdio.h>
462  int main(int argc, char **argv) {  int main(int argc, char **argv) {
463    printf("Hello!\n");    printf("Hello!\n");
464    return 0;    return 0;
465  }  }
466  EOF  EOF
467          $c -o genmake_hello genmake_hello.c > /dev/null 2>&1      tmp="$MITGCM_CC $CC gcc c89 cc c99 mpicc icc"
468        p_CC=
469        for c in $tmp ; do
470            COMM="$c $CFLAGS -o genmake_hello genmake_hello.c"
471            echo $COMM >> $LOGFILE
472            $COMM >> $LOGFILE 2>&1
473          RETVAL=$?          RETVAL=$?
474          if test "x${RETVAL}" = x0 ; then          if test "x${RETVAL}" = x0 ; then
475                echo " $c test successful" >> $LOGFILE
476              p_CC="$p_CC $c"              p_CC="$p_CC $c"
477          fi          fi
478      done      done
# Line 300  Error: No C compilers were found in your Line 488  Error: No C compilers were found in your
488  EOF  EOF
489          exit 1          exit 1
490      else      else
491          echo "  The possible C compilers found in your path are:"          echo "  The possible C compilers found in your path are: $p_CC" | tee -a $LOGFILE
         echo "   "$p_CC  
492          if test "x$CC" = x ; then          if test "x$CC" = x ; then
493              CC=`echo $p_CC | $AWK '{print $1}'`              CC=`echo $p_CC | $AWK '{print $1}'`
494              echo "  Setting C compiler to: "$CC              echo "  Setting C compiler to: "$CC
495          fi          fi
496      fi      fi
497        echo " --> set CC='$CC'" >> $LOGFILE
498    }
499    
500    # Guess possible config options for this host
501    find_possible_optfile()  {
502    
503        echo >> $LOGFILE
504        echo "running: find_possible_optfile()" >> $LOGFILE
505        tmp1=`uname`"_"`uname -m`
506        tmp2=`echo $tmp1 | sed -e 'y/ABCDEFGHIJKLMNOPQRSTUVWXYZ/abcdefghijklmnopqrstuvwxyz/'`
507        tmp3=`echo $tmp2 | sed -e 's/power macintosh/ppc/'`
508        tmp1=`echo $tmp3 | sed -e 's|x86_64|amd64|'`
509        tmp2=`echo $tmp1 | sed -e 's/i[3-6]86/ia32/' | sed -e 's/athlon/ia32/'`
510        tmp3=`echo $tmp2 | sed -e 's/cray sv1/craysv1/'`
511        PLATFORM=$tmp3
512        echo $PLATFORM | grep cygwin > /dev/null 2>&1  &&  PLATFORM=cygwin_ia32
513        OFLIST=`(cd $ROOTDIR/tools/build_options; ls | grep "^$PLATFORM")`
514        echo "  The platform appears to be:  $PLATFORM" | tee -a $LOGFILE
515    
516      #================================================================      #================================================================
517      #  look for possible FORTRAN compilers      #  look for possible FORTRAN compilers
518      tmp="$MITGCM_FC $FC efc g77 f77 pgf77 pgf95 ifc f90 f95 mpif77 mpf77 mpxlf95"      echo "  look for possible FORTRAN compilers" >> $LOGFILE
519        tmp="$MITGCM_FC $FC efc gfortran g77 f77 pgf77 pgf95 ifc ifort f90 f95 mpif77 mpf77 mpxlf95 g95"
520      p_FC=      p_FC=
521      for c in $tmp ; do      rm -f ./genmake_hello.f
522          rm -f ./hello.f ./hello      cat >> genmake_hello.f <<EOF
         cat >> hello.f <<EOF  
523        program hello        program hello
524        do i=1,3        do i=1,3
525          print *, 'hello world : ', i          print *, 'hello world : ', i
526        enddo        enddo
527        end        end
528  EOF  EOF
529          $c -o hello hello.f > /dev/null 2>&1      for f in $tmp ; do
530            COMM="$f -o genmake_hello genmake_hello.f"
531            echo $COMM >> $LOGFILE
532            $COMM >> $LOGFILE 2>&1
533          RETVAL=$?          RETVAL=$?
534          if test "x${RETVAL}" = x0 ; then          if test "x${RETVAL}" = x0 ; then
535              p_FC="$p_FC $c"              echo " $f test successful" >> $LOGFILE
536                p_FC="$p_FC $f"
537          fi          fi
538      done      done
539      rm -f ./hello.f ./hello      rm -f ./genmake_hello.f ./genmake_hello
540      if test "x${p_FC}" = x ; then      if test "x${p_FC}" = x ; then
541          cat 1>&2 <<EOF          cat 1>&2 <<EOF
542    
# Line 340  Error: No Fortran compilers were found i Line 549  Error: No Fortran compilers were found i
549  EOF  EOF
550          exit 1          exit 1
551      else      else
552          echo "  The possible FORTRAN compilers found in your path are:"          echo "  The possible FORTRAN compilers found in your path are: $p_FC" | tee -a $LOGFILE
553          echo "   "$p_FC      fi
554          if test "x$FC" = x ; then  
555              FC=`echo $p_FC | $AWK '{print $1}'`      #  Use the first of the compilers found in the current PATH
556              echo "  Setting FORTRAN compiler to: "$FC      #  that has a correctly-named optfile
557          fi      if test "x$OPTFILE" = x  -a  "x$FC" = x ; then
558            for i in $p_FC ; do
559                OPTFILE=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$i
560                if test -r $OPTFILE ; then
561                    echo "  Setting OPTFILE to: "$OPTFILE | tee -a $LOGFILE
562                    break
563                fi
564            done
565      fi      fi
566    
567      if test "x$OPTFILE" = x ; then      if test "x$OPTFILE" = x ; then
568          OPTFILE=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$FC          OPTFILE=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$FC
569          if test ! -r $OPTFILE ; then          if test ! -r $OPTFILE ; then
570               echo "  I looked for the file "$OPTFILE" but did not find it"               echo "  I looked for the file "$OPTFILE" but did not find it"
571          fi          fi
572      fi      fi
573  #    echo "  The options file:  $p_OF"  
 #    echo "    appears to match so we'll use it."  
 #   for i in $p_FC ; do  
 #p_OF=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$i  
 #if test -r $p_OF ; then  
 #    OPTFILE=$p_OF  
 #    echo "  The options file:  $p_OF"  
 #    echo "    appears to match so we'll use it."  
 #    break  
 #fi  
 #   done  
574      if test "x$OPTFILE" = x ; then      if test "x$OPTFILE" = x ; then
575          cat 1>&2 <<EOF          cat 1>&2 <<EOF
576    
# Line 380  Error: No options file was found in:  $R Line 586  Error: No options file was found in:  $R
586  EOF  EOF
587          exit 1          exit 1
588      fi      fi
       
 #     # look for possible MPI libraries  
 #     mpi_libs=  
 #     mpi_fort=`which mpif77 2>/dev/null`  
 #     RETVAL=$?  
 #     if test "x${RETVAL}" = x0 ; then  
 #       cat >>test.f <<EOF  
 #       PROGRAM HELLO  
 #       DO 10, I=1,10  
 #       PRINT *,'Hello World'  
 #    10 CONTINUE  
 #       STOP  
 #       END  
 # EOF  
 #       eval "$mpi_fort -showme test.f > out"  
 #       RETVAL=$?  
 #       if test "x${RETVAL}" = x0 ; then  
 #           a=`cat out`  
 #           for i in $a ; do  
 #               case $i in  
 #                   -*)  
 #                       mpi_libs="$mpi_libs $i" ;;  
 #               esac  
 #           done  
 #           echo "The MPI libs appear to be:"  
 #           echo "  "$mpi_libs  
 #       fi  
 #       rm -f test.f out  
 #     fi  
   
589  }  }
590    
591  #  Parse the package dependency information  #  Parse the package dependency information
# Line 418  get_pdepend_list()  { Line 594  get_pdepend_list()  {
594      #  strip the comments and then convert the dependency file into      #  strip the comments and then convert the dependency file into
595      #  two arrays: PNAME, DNAME      #  two arrays: PNAME, DNAME
596      cat $1 | sed -e 's/#.*$//g' \      cat $1 | sed -e 's/#.*$//g' \
597          | $AWK 'BEGIN{nn=0;} (NF>0){ for(i=2;i<=NF;i++){nn++; print "PNAME["nn"]="$1"\nDNAME["nn"]="$i} }' \          | $AWK 'BEGIN{nn=-1;} (NF>0){ for(i=2;i<=NF;i++){nn++; print "PNAME_"nn"="$1"\nDNAME_"nn"="$i}} END{print "nname="nn}' \
598          > ./.pd_tmp          > ./.pd_tmp
599        RETVAL=$?
600        if test ! "x${RETVAL}" = x0 ; then
601          echo "Error: unable to parse package dependencies -- please check PKG_DEPEND=\"$1\""
602          exit 1
603        fi
604      . ./.pd_tmp      . ./.pd_tmp
605      rm -f ./.pd_tmp      rm -f ./.pd_tmp
   
     printf "PNAME = "${}  
 }  
   
   
 #  Explain usage  
 usage()  {  
 cat <<EOF  
   
 Usage: "$0" [OPTIONS]  
   where [OPTIONS] can be:  
   
     -help | --help | -h | --h  
           Print this help message and exit.  
   
     -adoptfile NAME | --adoptfile NAME | -adof NAME | --adof NAME  
       -adoptfile=NAME | --adoptfile=NAME | -adof=NAME | --adof=NAME  
           Use "NAME" as the adoptfile.  By default, the file at  
           "tools/adjoint_options/adjoint_default" will be used.  
   
     -nooptfile | --nooptfile  
       -optfile NAME | --optfile NAME | -of NAME | --of NAME  
       -optfile=NAME | --optfile=NAME | -of=NAME | --of=NAME  
           Use "NAME" as the optfile.  By default, an attempt will be  
           made to find an appropriate "standard" optfile in the  
           tools/build_options/ directory.  
   
     -pdepend NAME | --pdepend NAME  
       -pdepend=NAME | --pdepend=NAME  
           Get package dependency information from "NAME".  
   
     -pdefault NAME | --pdefault NAME  
       -pdefault=NAME | --pdefault=NAME  
           Get the default package list from "NAME".  
   
     -make NAME | -m NAME  
       --make=NAME | -m=NAME  
           Use "NAME" for the MAKE program. The default is "make" but  
           many platforms, "gmake" is the preferred choice.  
   
     -makefile NAME | -mf NAME  
       --makefile=NAME | -mf=NAME  
           Call the makefile "NAME".  The default is "Makefile".  
   
     -makedepend NAME | -md NAME  
       --makedepend=NAME | -md=NAME  
           Use "NAME" for the MAKEDEPEND program.  
   
     -rootdir NAME | --rootdir NAME | -rd NAME | --rd NAME  
       -rootdir=NAME | --rootdir=NAME | -rd=NAME | --rd=NAME  
           Specify the location of the MITgcm ROOTDIR as "NAME".  
           By default, genamke will try to find the location by  
           looking in parent directories (up to the 5th parent).  
   
     -mods NAME | --mods NAME | -mo NAME | --mo NAME  
       -mods=NAME | --mods=NAME | -mo=NAME | --mo=NAME  
           Here, "NAME" specifies a list of directories that are  
           used for additional source code.  Files found in the  
           "mods list" are given preference over files of the same  
           name found elsewhere.  
   
     -disable NAME | --disable NAME  
       -disable=NAME | --disable=NAME  
           Here "NAME" specifies a list of packages that we don't  
           want to use.  If this violates package dependencies,  
           genamke will exit with an error message.  
   
     -enable NAME | --enable NAME  
       -enable=NAME | --enable=NAME  
           Here "NAME" specifies a list of packages that we wish  
           to specifically enable.  If this violates package  
           dependencies, genamke will exit with an error message.  
   
     -standarddirs NAME | --standarddirs NAME  
       -standarddirs=NAME | --standarddirs=NAME  
           Here, "NAME" specifies a list of directories to be  
           used as the "standard" code.  
   
     -fortran NAME | --fortran NAME | -fc NAME | --fc NAME  
       -fc=NAME | --fc=NAME  
           Use "NAME" as the fortran compiler.  By default, genmake  
           will search for a working compiler by trying a list of  
           "usual suspects" such as g77, f77, etc.  
   
     -cc NAME | --cc NAME | -cc=NAME | --cc=NAME  
           Use "NAME" as the C compiler.  By default, genmake  
           will search for a working compiler by trying a list of  
           "usual suspects" such as gcc, c89, cc, etc.  
   
     -[no]ieee | --[no]ieee  
           Do or don't use IEEE numerics.  Note that this option  
           *only* works if it is supported by the OPTFILE that  
           is being used.  
   
     -mpi | --mpi  
           Include MPI header files and link to MPI libraries  
     -mpi=PATH | --mpi=PATH  
           Include MPI header files and link to MPI libraries using MPI_ROOT  
           set to PATH. i.e. Include files from \$PATH/include, link to libraries  
           from \$PATH/lib and use binaries from \$PATH/bin.  
   
     -bash NAME  
           Explicitly specify the Bourne or BASH shell to use  
   
   While it is most often a single word, the "NAME" variables specified  
   above can in many cases be a space-delimited string such as:  
   
     --enable pkg1   --enable 'pkg1 pkg2'   --enable 'pkg1 pkg2 pkg3'  
     -mods=dir1   -mods='dir1'   -mods='dir1 dir2 dir3'  
     -foptim='-Mvect=cachesize:512000,transform -xtypemap=real:64,double:64,integer:32'  
   
   which, depending upon your shell, may need to be single-quoted.  
   
   For more detailed genmake documentation, please see:  
   
     http://mitgcm.org/devel_HOWTO/  
   
 EOF  
   
     exit 1  
606  }  }
607    
608  #  Build a CPP macro to automate calling C routines from FORTRAN  #  Build a CPP macro to automate calling C routines from FORTRAN
# Line 549  get_fortran_c_namemangling()  { Line 610  get_fortran_c_namemangling()  {
610    
611      #echo "FC_NAMEMANGLE = \"$FC_NAMEMANGLE\""      #echo "FC_NAMEMANGLE = \"$FC_NAMEMANGLE\""
612      if test ! "x$FC_NAMEMANGLE" = x ; then      if test ! "x$FC_NAMEMANGLE" = x ; then
613          return 0          return 0
614      fi      fi
615        echo " running: get_fortran_c_namemangling()" >> $LOGFILE
616    
617      default_nm="#define FC_NAMEMANGLE(X) X ## _"      default_nm="#define FC_NAMEMANGLE(X) X ## _"
618        
619      cat > genmake_test.c <<EOF      cat > genmake_test.c <<EOF
620  void tcall( char * string ) { tsub( string ); }  void tcall( char * string ) { tsub( string ); }
621  EOF  EOF
622      $MAKE genmake_test.o >> genmake_warnings 2>&1      COMM="$CC $CFLAGS -c genmake_test.c"
623        echo ' '$COMM >> $LOGFILE
624        $COMM >> $LOGFILE 2>&1
625      RETVAL=$?      RETVAL=$?
626      if test "x$RETVAL" != x0 ; then      if test "x$RETVAL" != x0 ; then
627          FC_NAMEMANGLE=$default_nm          FC_NAMEMANGLE=$default_nm
628          cat <<EOF>> genmake_errors          cat <<EOF>> $LOGFILE
629    
630  WARNING: C test compile fails   WARNING: C test compile fails
631  WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'   WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
632  WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here   WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here
633  EOF  EOF
634          return 1          return 1
635      fi      fi
# Line 573  EOF Line 637  EOF
637      RETVAL=$?      RETVAL=$?
638      if test "x$RETVAL" != x0 ; then      if test "x$RETVAL" != x0 ; then
639          FC_NAMEMANGLE=$default_nm          FC_NAMEMANGLE=$default_nm
640          cat <<EOF>> genmake_warnings          cat <<EOF>> $LOGFILE
641    
642  WARNING: The "nm" command failed.   WARNING: The "nm" command failed.
643  WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'   WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
644  WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here   WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here
645  EOF  EOF
646          return 1          return 1
647      fi      fi
648      cat > genmake_tcomp.f <<EOF      cat > genmake_tcomp.$FS <<EOF
649        subroutine tcall( string )        subroutine tcall( string )
650        character*(*) string        character*(*) string
651        call tsub( string )        call tsub( string )
652        end        end
653  EOF  EOF
654      $FC $FFLAGS $DEFINES -c genmake_tcomp.f >> genmake_warnings 2>&1      COMM="$FC $FFLAGS -c genmake_tcomp.$FS"
655        echo ' '$COMM >> $LOGFILE
656        $COMM >> $LOGFILE 2>&1
657      RETVAL=$?      RETVAL=$?
658      if test "x$RETVAL" != x0 ; then      if test "x$RETVAL" != x0 ; then
659          FC_NAMEMANGLE=$default_nm          FC_NAMEMANGLE=$default_nm
660          cat <<EOF>> genmake_warnings          cat <<EOF>> $LOGFILE
661    
662  WARNING: FORTRAN test compile fails -- please see "genmake_errors"   WARNING: FORTRAN test compile fails -- please see '$LOGFILE'
663  WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'   WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
664  WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here.   WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here.
665  EOF  EOF
666          return 1          return 1
667      fi      fi
# Line 603  EOF Line 669  EOF
669      RETVAL=$?      RETVAL=$?
670      if test "x$RETVAL" != x0 ; then      if test "x$RETVAL" != x0 ; then
671          FC_NAMEMANGLE=$default_nm          FC_NAMEMANGLE=$default_nm
672          cat <<EOF>> genmake_warnings          cat <<EOF>> $LOGFILE
673    
674  WARNING: The "nm" command failed.   WARNING: The "nm" command failed.
675  WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'   WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
676  WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here.   WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here.
677  EOF  EOF
678          return 1          return 1
679      fi      fi
# Line 633  EOF Line 699  EOF
699    
700      #  cleanup the testing files      #  cleanup the testing files
701      rm -f genmake_tcomp.* genmake_test.*      rm -f genmake_tcomp.* genmake_test.*
 }  
702    
703        echo " --> set FC_NAMEMANGLE='$FC_NAMEMANGLE'" >> $LOGFILE
704    }
705    
706  check_HAVE_CLOC()  {  check_HAVE_CLOC()  {
707        echo >> $LOGFILE
708        echo "running: check_HAVE_CLOC()" >> $LOGFILE
709      get_fortran_c_namemangling      get_fortran_c_namemangling
710      cat <<EOF > genmake_tc_1.c      cat <<EOF > genmake_tc_1.c
711  $FC_NAMEMANGLE  $FC_NAMEMANGLE
# Line 653  void FC_NAMEMANGLE(cloc) ( double *curti Line 722  void FC_NAMEMANGLE(cloc) ( double *curti
722   *curtim = *curtim/1.E6;   *curtim = *curtim/1.E6;
723  }  }
724  EOF  EOF
725      make genmake_tc_1.o >> genmake_tc.log 2>&1      COMM="$CC $CFLAGS -c genmake_tc_1.c"
726        echo $COMM >> $LOGFILE
727        $COMM >> $LOGFILE 2>&1
728      RET_C=$?      RET_C=$?
729      cat <<EOF > genmake_tc_2.f      cat <<EOF > genmake_tc_2.$FS
730        program hello        program hello
731        Real*8 wtime        REAL*8 wtime
732        external cloc        external cloc
733        call cloc(wtime)        call cloc(wtime)
734        print *," HELLO WORLD", wtime        print *," HELLO WORLD", wtime
735        end program hello        end
736  EOF  EOF
737      $FC $FFLAGS -o genmake_tc genmake_tc_2.f genmake_tc_1.o >> genmake_tc.log 2>&1      COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"
738        echo $COMM >> $LOGFILE
739        $COMM >> $LOGFILE 2>&1
740      RET_F=$?      RET_F=$?
741      test -x ./genmake_tc  &&  ./genmake_tc >> genmake_tc.log 2>&1      test -x ./genmake_tc  &&  ./genmake_tc >> $LOGFILE 2>&1
742      RETVAL=$?      RETVAL=$?
743      if test "x$RETVAL" = x0 ; then      if test "x$RETVAL" = x0 ; then
744          HAVE_CLOC=t          HAVE_CLOC=t
         DEFINES="$DEFINES -DHAVE_CLOC"  
745      fi      fi
746      rm -f genmake_tc*      rm -f genmake_tc*
747        echo " --> set HAVE_CLOC='$HAVE_CLOC'" >> $LOGFILE
748    }
749    
750    check_HAVE_SIGREG()  {
751        if test ! "x$HAVE_SIGREG" = x ; then
752            return
753        fi
754        echo >> $LOGFILE
755        echo "running: check_HAVE_SIGREG()" >> $LOGFILE
756        get_fortran_c_namemangling
757        cat <<EOF > genmake_tc_1.c
758    $FC_NAMEMANGLE
759    #include <stdlib.h>
760    #include <stdio.h>
761    #include <signal.h>
762    #include <errno.h>
763    #include <ucontext.h>
764    
765    int * ip;
766    
767    static void killhandler(
768        unsigned int sn, siginfo_t  si, struct ucontext *sc )
769    {
770        *ip = *ip + 1;
771        return;
772    }
773    
774    void FC_NAMEMANGLE(sigreg) (int * aip)
775    {
776        struct sigaction s;
777        ip = aip;
778        s.sa_flags = SA_SIGINFO;
779        s.sa_sigaction = (void *)killhandler;
780        if(sigaction (SIGTERM,&s,(struct sigaction *)NULL)) {
781            printf("Sigaction returned error = %d\n", errno);
782            exit(0);
783        }
784        return;
785    }
786    EOF
787        COMM="$CC $CFLAGS -c genmake_tc_1.c"
788        echo $COMM >> $LOGFILE
789        $COMM >> $LOGFILE 2>&1
790        RET_C=$?
791        cat <<EOF > genmake_tc_2.$FS
792          program hello
793          integer anint
794          common /iv/ anint
795          external sigreg
796          call sigreg(anint)
797          end
798    EOF
799        cat genmake_tc_2.$FS >> $LOGFILE
800        COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"
801        echo $COMM >> $LOGFILE
802        $COMM >> $LOGFILE 2>&1
803        RETVAL=$?
804        if test "x$RETVAL" = x0 ; then
805            HAVE_SIGREG=t
806        fi
807        rm -f genmake_tc*
808        echo " --> set HAVE_SIGREG='$HAVE_SIGREG'" >> $LOGFILE
809    }
810    
811    check_HAVE_SETRLSTK()  {
812        if test ! "x$HAVE_SETRLSTK" = x ; then
813            return
814        fi
815        echo >> $LOGFILE
816        echo "running: check_HAVE_SETRLSTK()" >> $LOGFILE
817        get_fortran_c_namemangling
818        cat <<EOF > genmake_tc_1.c
819    $FC_NAMEMANGLE
820    #include <sys/time.h>
821    #include <sys/resource.h>
822    #include <unistd.h>
823    void FC_NAMEMANGLE(setrlstk) ()
824    {
825        struct rlimit rls;
826        rls.rlim_cur = RLIM_INFINITY;
827        rls.rlim_max = RLIM_INFINITY;
828        setrlimit(RLIMIT_STACK, &rls);
829        return;
830    }
831    EOF
832        COMM="$CC $CFLAGS -c genmake_tc_1.c"
833        echo $COMM >> $LOGFILE
834        $COMM >> $LOGFILE 2>&1
835        RET_C=$?
836        cat <<EOF > genmake_tc_2.$FS
837          program hello
838          external setrlstk
839          call setrlstk()
840          end
841    EOF
842        cat genmake_tc_2.$FS >> $LOGFILE
843        COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"
844        echo $COMM >> $LOGFILE
845        $COMM >> $LOGFILE 2>&1
846        RETVAL=$?
847        if test "x$RETVAL" = x0 ; then
848            HAVE_SETRLSTK=t
849        fi
850        rm -f genmake_tc*
851        echo " --> set HAVE_SETRLSTK='$HAVE_SETRLSTK'" >> $LOGFILE
852  }  }
853    
854    check_HAVE_STAT()  {
855        echo >> $LOGFILE
856        echo "running: check_HAVE_STAT()" >> $LOGFILE
857        get_fortran_c_namemangling
858        cat <<EOF > genmake_tc_1.c
859    $FC_NAMEMANGLE
860    #include <stdio.h>
861    #include <stdlib.h>
862    #include <unistd.h>
863    #include <sys/stat.h>
864    #include <sys/types.h>
865    void FC_NAMEMANGLE(tfsize) ( int *nbyte )
866    {
867        char name[512];
868        struct stat astat;
869    
870        name[0] = 'a'; name[1] = '\0';
871        if (! stat(name, &astat))
872            *nbyte = (int)(astat.st_size);
873        else
874            *nbyte = -1;
875    }
876    EOF
877        COMM="$CC $CFLAGS -c genmake_tc_1.c"
878        echo $COMM >> $LOGFILE
879        $COMM >> genmake_tc.log 2>&1
880        RET_C=$?
881        cat <<EOF > genmake_tc_2.$FS
882          program hello
883          integer nbyte
884          call tfsize(nbyte)
885          print *," HELLO WORLD", nbyte
886          end
887    EOF
888        cat genmake_tc_2.$FS >> $LOGFILE
889        COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"
890        echo $COMM >> $LOGFILE
891        $COMM >> genmake_tc.log 2>&1
892        RETVAL=$?
893        if test "x$RETVAL" = x0 ; then
894            HAVE_STAT=t
895        fi
896        rm -f genmake_tc*
897        echo " --> set HAVE_STAT='$HAVE_STAT'" >> $LOGFILE
898    }
899    
900  check_netcdf_libs()  {  check_netcdf_libs()  {
901      echo "" > genmake_tnc.log      if test ! "x$SKIP_NETCDF_CHECK" = x ; then
902      cat <<EOF > genmake_tnc.for          return
903        fi
904        echo >> $LOGFILE
905        echo "running: check_netcdf_libs()" >> $LOGFILE
906        cat <<EOF > genmake_tnc.F
907        program fgennc        program fgennc
908  #include "netcdf.inc"  #include "netcdf.inc"
909    EOF
910        if test ! "x$MPI" = x ; then
911            echo '#include "mpif.h"' >> genmake_tnc.F
912        fi
913        cat <<EOF >> genmake_tnc.F
914        integer iret, ncid, xid        integer iret, ncid, xid
915        iret = nf_create('genmake_tnc.nc', NF_CLOBBER, ncid)        iret = nf_create('genmake_tnc.nc', NF_CLOBBER, ncid)
916        IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret)        IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret)
# Line 689  check_netcdf_libs()  { Line 920  check_netcdf_libs()  {
920        IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret)        IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret)
921        end        end
922  EOF  EOF
923      #echo "$CPP $DEFINES $INCLUDES genmake_tnc.for > genmake_tnc.f"      echo "===  genmake_tnc.F  >>>" > genmake_tnc.log
924      #echo "$FC $FFLAGS $FOPTIM -c genmake_tnc.f"      cat genmake_tnc.F >> genmake_tnc.log
925      #echo "$LINK -o genmake_tnc.o $LIBS"      echo "<<<  genmake_tnc.F  ===" >> genmake_tnc.log
926      $CPP $DEFINES $INCLUDES genmake_tnc.for > genmake_tnc.f 2>/dev/null  \      RET_CPP=f
927          &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.f  \      COMM="cat genmake_tnc.F | $CPP $DEFINES $INCLUDES"
928          &&  $LINK -o genmake_tnc genmake_tnc.o $LIBS >> genmake_tnc.log 2>&1      echo "$COMM" >> genmake_tnc.log
929        eval $COMM > genmake_tnc.$FS 2>/dev/null  &&  RET_CPP=t
930        if test "x$RET_CPP" = xf ; then
931            echo "  WARNING: CPP failed to pre-process the netcdf test." \
932                >> genmake_tnc.log
933            echo "    Please check that \$INCLUDES is properly set." \
934                >> genmake_tnc.log
935        fi
936        echo "$FC $FFLAGS $FOPTIM -c genmake_tnc.$FS  \ " >> genmake_tnc.log
937        echo "  &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc.o $LIBS" >> genmake_tnc.log
938        $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS >> genmake_tnc.log 2>&1  \
939            &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS >> genmake_tnc.log 2>&1
940      RET_COMPILE=$?      RET_COMPILE=$?
941      test -x ./genmake_tnc  &&  ./genmake_tnc >> genmake_tnc.log 2>&1      cat genmake_tnc.log >> $LOGFILE
942      RETVAL=$?  
943      if test "x$RET_COMPILE" = x0 -a "x$RETVAL" = x0 ; then      #EH3  Remove test program execution for machines that either disallow
944        #EH3  execution or cannot support it (eg. cross-compilers)
945        #EH3
946        #EH3 test -x ./genmake_tnc  &&  ./genmake_tnc >> genmake_tnc.log 2>&1
947        #EH3 RETVAL=$?
948        #EH3 if test "x$RET_COMPILE" = x0 -a "x$RETVAL" = x0 ; then
949    
950        if test "x$RET_COMPILE" = x0 ; then
951          HAVE_NETCDF=t          HAVE_NETCDF=t
952            echo "check_netcdf: successful" >> $LOGFILE
953      else      else
954          # try again with "-lnetcdf" added to the libs          # try again with "-lnetcdf" added to the libs
955          $CPP $DEFINES $INCLUDES genmake_tnc.for > genmake_tnc.f 2>/dev/null  \          echo "==> try again with added '-lnetcdf'" > genmake_tnc.log
956              &&  $FC $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.f \          echo "cat genmake_tnc.F | $CPP $DEFINES $INCLUDES > genmake_tnc.$FS \ " >> genmake_tnc.log
957              $LIBS -lnetcdf >> genmake_tnc_2.log 2>&1          echo " &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS \ " >> genmake_tnc.log
958            echo " &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdf" >> genmake_tnc.log
959            cat genmake_tnc.F | $CPP $DEFINES $INCLUDES > genmake_tnc.$FS 2>/dev/null  \
960                &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS >> genmake_tnc.log 2>&1  \
961                &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdf >> genmake_tnc.log 2>&1
962          RET_COMPILE=$?          RET_COMPILE=$?
963          test -x ./genmake_tnc  &&  ./genmake_tnc >> genmake_tnc.log 2>&1          echo >> $LOGFILE
964          RETVAL=$?          cat genmake_tnc.log >> $LOGFILE
965          if test "x$RET_COMPILE" = x0 -a "x$RETVAL" = x0 ; then          if test "x$RET_COMPILE" = x0 ; then
966              LIBS="$LIBS -lnetcdf"              LIBS="$LIBS -lnetcdf"
967              HAVE_NETCDF=t              HAVE_NETCDF=t
968                echo "check_netcdf: successful" >> $LOGFILE
969          else          else
970              cat genmake_tnc.log >> genmake_warnings          # try again with "-lnetcdff" added to the libs
971                echo "==> try again with added '-lnetcdff -lnetcdf'" > genmake_tnc.log
972                echo "cat genmake_tnc.F | $CPP $DEFINES $INCLUDES > genmake_tnc.$FS \ " >> genmake_tnc.log
973                echo " &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS \ " >> genmake_tnc.log
974                echo " &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdf" >> genmake_tnc.log
975                cat genmake_tnc.F | $CPP $DEFINES $INCLUDES > genmake_tnc.$FS 2>/dev/null  \
976                    &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS >> genmake_tnc.log 2>&1  \
977                    &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdff -lnetcdf >> genmake_tnc.log 2>&1
978                RET_COMPILE=$?
979                echo >> $LOGFILE
980                cat genmake_tnc.log >> $LOGFILE
981                if test "x$RET_COMPILE" = x0 ; then
982                    LIBS="$LIBS -lnetcdff -lnetcdf"
983                    HAVE_NETCDF=t
984                    echo "check_netcdf: successful" >> $LOGFILE
985                fi
986          fi          fi
987      fi      fi
988      rm -f genmake_tnc*      rm -f genmake_tnc*
989        echo " --> set HAVE_NETCDF='$HAVE_NETCDF'" >> $LOGFILE
990  }  }
991    
992    check_lapack_libs()  {
993        if test ! "x$SKIP_LAPACK_CHECK" = x ; then
994            return
995        fi
996        echo >> $LOGFILE
997        echo "running: check_lapack_libs()" >> $LOGFILE
998        cat <<EOF > genmake_tla.F
999          program fgenla
1000          integer info
1001          integer ipiv( 2 )
1002          double precision ab( 4, 2 ), b( 2 )
1003          data ab / 0., 0., 1., 2., 0., 2., 1., 0. /
1004          data b / 1., 1. /
1005          call dgbsv( 2, 1, 1, 1, ab, 4, ipiv, b, 2, info )
1006          IF (info .NE. 0) write(*,*) 'Error:', info
1007          write(*,*) b
1008          end
1009    EOF
1010        echo "===  genmake_tla.F  >>>" > genmake_tla.log
1011        cat genmake_tla.F >> genmake_tla.log
1012        echo "<<<  genmake_tla.F  ===" >> genmake_tla.log
1013        RET_CPP=f
1014        COMM="cat genmake_tla.F | $CPP $DEFINES $INCLUDES"
1015        echo "$COMM" >> genmake_tla.log
1016        eval $COMM > genmake_tla.$FS 2>/dev/null  &&  RET_CPP=t
1017        if test "x$RET_CPP" = xf ; then
1018            echo "  WARNING: CPP failed to pre-process the lapack test." \
1019                >> genmake_tla.log
1020            echo "    Please check that \$INCLUDES is properly set." \
1021                >> genmake_tla.log
1022        fi
1023        echo "$FC $FFLAGS $FOPTIM -c genmake_tla.$FS  \ " >> genmake_tla.log
1024        echo "  &&  $LINK $FFLAGS $FOPTIM -o genmake_tla.o $LIBS" >> genmake_tla.log
1025        $FC $FFLAGS $FOPTIM -c genmake_tla.$FS >> genmake_tla.log 2>&1  \
1026            &&  $LINK $FFLAGS $FOPTIM -o genmake_tla genmake_tla.o $LIBS >> genmake_tla.log 2>&1
1027        RET_COMPILE=$?
1028        cat genmake_tla.log >> $LOGFILE
1029    
1030        # test program execution not always possible (see check_netcdf_libs)
1031        #
1032        #test -x ./genmake_tla  &&  ./genmake_tla >> genmake_tla.log 2>&1
1033        #RETVAL=$?
1034        #if test "x$RET_COMPILE" = x0 -a "x$RETVAL" = x0 ; then
1035    
1036        if test "x$RET_COMPILE" = x0 ; then
1037            HAVE_LAPACK=t
1038            echo "check_lapack: successful" >> $LOGFILE
1039        else
1040            # try again with "-llapack" added to the libs
1041            echo "==> try again with added '-llapack'" > genmake_tla.log
1042            echo "cat genmake_tla.F | $CPP $DEFINES $INCLUDES > genmake_tla.$FS \ " >> genmake_tla.log
1043            echo " &&  $FC $FFLAGS $FOPTIM -c genmake_tla.$FS \ " >> genmake_tla.log
1044            echo " &&  $LINK $FFLAGS $FOPTIM -o genmake_tla genmake_tla.o $LIBS -llapack" >> genmake_tla.log
1045            cat genmake_tla.F | $CPP $DEFINES $INCLUDES > genmake_tla.$FS 2>/dev/null  \
1046                &&  $FC $FFLAGS $FOPTIM -c genmake_tla.$FS >> genmake_tla.log 2>&1  \
1047                &&  $LINK $FFLAGS $FOPTIM -o genmake_tla genmake_tla.o $LIBS -llapack >> genmake_tla.log 2>&1
1048            RET_COMPILE=$?
1049            echo >> $LOGFILE
1050            cat genmake_tla.log >> $LOGFILE
1051            if test "x$RET_COMPILE" = x0 ; then
1052                LIBS="$LIBS -llapack"
1053                HAVE_LAPACK=t
1054                echo "check_lapack: successful" >> $LOGFILE
1055            else
1056            # try again with "-lf77blas -lcblas" added to the libs
1057                echo "==> try again with added '-llapack -lf77blas -lcblas'" > genmake_tla.log
1058                echo "cat genmake_tla.F | $CPP $DEFINES $INCLUDES > genmake_tla.$FS \ " >> genmake_tla.log
1059                echo " &&  $FC $FFLAGS $FOPTIM -c genmake_tla.$FS \ " >> genmake_tla.log
1060                echo " &&  $LINK $FFLAGS $FOPTIM -o genmake_tla genmake_tla.o $LIBS -llapack -lf77blas -lcblas" >> genmake_tla.log
1061                cat genmake_tla.F | $CPP $DEFINES $INCLUDES > genmake_tla.$FS 2>/dev/null  \
1062                    &&  $FC $FFLAGS $FOPTIM -c genmake_tla.$FS >> genmake_tla.log 2>&1  \
1063                    &&  $LINK $FFLAGS $FOPTIM -o genmake_tla genmake_tla.o $LIBS -llapack -lf77blas -lcblas >> genmake_tla.log 2>&1
1064                RET_COMPILE=$?
1065                echo >> $LOGFILE
1066                cat genmake_tla.log >> $LOGFILE
1067                if test "x$RET_COMPILE" = x0 ; then
1068                    LIBS="$LIBS -llapack -lf77blas -lcblas"
1069                    HAVE_LAPACK=t
1070                    echo "check_lapack: successful" >> $LOGFILE
1071                else
1072                # try again with "-latlas" added to the libs
1073                    echo "==> try again with added '-llapack -lf77blas -lcblas -latlas'" > genmake_tla.log
1074                    echo "cat genmake_tla.F | $CPP $DEFINES $INCLUDES > genmake_tla.$FS \ " >> genmake_tla.log
1075                    echo " &&  $FC $FFLAGS $FOPTIM -c genmake_tla.$FS \ " >> genmake_tla.log
1076                    echo " &&  $LINK $FFLAGS $FOPTIM -o genmake_tla genmake_tla.o $LIBS -llapack -lf77blas -lcblas -latlas" >> genmake_tla.log
1077                    cat genmake_tla.F | $CPP $DEFINES $INCLUDES > genmake_tla.$FS 2>/dev/null  \
1078                        &&  $FC $FFLAGS $FOPTIM -c genmake_tla.$FS >> genmake_tla.log 2>&1  \
1079                        &&  $LINK $FFLAGS $FOPTIM -o genmake_tla genmake_tla.o $LIBS -llapack -lf77blas -lcblas -latlas >> genmake_tla.log 2>&1
1080                    RET_COMPILE=$?
1081                    echo >> $LOGFILE
1082                    cat genmake_tla.log >> $LOGFILE
1083                    if test "x$RET_COMPILE" = x0 ; then
1084                        LIBS="$LIBS -llapack -lf77blas -lcblas -latlas"
1085                        HAVE_LAPACK=t
1086                        echo "check_lapack: successful" >> $LOGFILE
1087                    fi
1088                fi
1089            fi
1090        fi
1091        rm -f genmake_tla*
1092        echo " --> set HAVE_LAPACK='$HAVE_LAPACK'" >> $LOGFILE
1093    }
1094    
1095    check_HAVE_FLUSH()  {
1096        if test ! "x$SKIP_CHECK_FLUSH" = x ; then
1097            return
1098        fi
1099        echo >> $LOGFILE
1100        echo "running: check_HAVE_FLUSH()" >> $LOGFILE
1101        cat <<EOF > genmake_tflsh.$FS
1102          program fgenflsh
1103          integer iounit
1104          character*9 fname
1105          iounit = 26
1106          fname = 'tmp.tflsh'
1107          open(iounit,FILE=fname,STATUS='unknown')
1108          write(iounit,*) 'genmake_tflsh: hello'
1109          call flush(iounit)
1110          close(iounit)
1111          end
1112    EOF
1113        echo "===  genmake_tflsh.$FS  >>>" > genmake_tflsh.log
1114        cat genmake_tflsh.$FS >> genmake_tflsh.log
1115        echo "<<<  genmake_tflsh.$FS  ===" >> genmake_tflsh.log
1116    
1117        echo "$FC $FFLAGS $FOPTIM -c genmake_tflsh.$FS  \ " >> genmake_tflsh.log
1118        echo "  &&  $LINK $FFLAGS $FOPTIM -o genmake_tflsh.o $LIBS" >> genmake_tflsh.log
1119        $FC $FFLAGS $FOPTIM -c genmake_tflsh.$FS >> genmake_tflsh.log 2>&1  \
1120            &&  $LINK $FFLAGS $FOPTIM -o genmake_tflsh genmake_tflsh.o $LIBS >> genmake_tflsh.log 2>&1
1121        RET_COMPILE=$?
1122    
1123        if test "x$RET_COMPILE" = x0 ; then
1124            HAVE_FLUSH=t
1125            #cat genmake_tflsh.log >> $LOGFILE
1126            echo "  check_HAVE_FLUSH: successful" >> $LOGFILE
1127        else
1128            HAVE_FLUSH=f
1129            cat genmake_tflsh.log >> $LOGFILE
1130        fi
1131        rm -f genmake_tflsh*
1132        echo " --> set HAVE_FLUSH='$HAVE_FLUSH'" >> $LOGFILE
1133    }
1134    
1135  ###############################################################################  ###############################################################################
1136  #   Sequential part of script starts here  #   Sequential part of script starts here
# Line 731  PLATFORM= Line 1143  PLATFORM=
1143  LN=  LN=
1144  S64=  S64=
1145  KPP=  KPP=
1146  FC=  #FC=
1147  #CC=gcc  #CC=gcc
1148  CPP=  #CPP=
1149  LINK=  LINK=
1150  DEFINES=  DEFINES=
1151  PACKAGES=  PACKAGES=
1152  ENABLE=  ENABLE=
1153  DISABLE=  DISABLE=
1154  MAKEFILE=  # MAKEFILE=
1155  #MAKEDEPEND=  # MAKEDEPEND=
1156  PDEPEND=  PKG_DEPEND=
1157  DUMPSTATE=t  PKG_GROUPS=
1158  PDEFAULT=  DUMPSTATE=f
1159  OPTFILE=  OPTFILE=
1160  INCLUDES="-I."  INCLUDES="-I. $INCLUDES"
1161  FFLAGS=  FFLAGS=
1162  FOPTIM=  FOPTIM=
1163    FEXTRAFLAGS=
1164    USE_EXTENDED_SRC=
1165    EXTENDED_SRC_FLAG=
1166    GET_FC_VERSION=
1167  CFLAGS=  CFLAGS=
1168  KFLAGS1=  KFLAGS1=
1169  KFLAGS2=  KFLAGS2=
# Line 758  NOOPTFILES= Line 1174  NOOPTFILES=
1174  NOOPTFLAGS=  NOOPTFLAGS=
1175  MPI=  MPI=
1176  MPIPATH=  MPIPATH=
1177    OMP=
1178    OMPFLAG=
1179    USE_R4=
1180    TS=
1181    PAPIS=
1182    PCLS=
1183    FOOLAD=
1184    PAPI=
1185    PCL=
1186    HPMT=
1187    GSL=
1188    DEVEL=
1189    HAVE_TEST_L=
1190    
1191  # DEFINES checked by test compilation  # DEFINES checked by test compilation or command-line
1192  HAVE_SYSTEM=  HAVE_SYSTEM=
1193  HAVE_FDATE=  HAVE_FDATE=
1194  FC_NAMEMANGLE=  FC_NAMEMANGLE=
1195  HAVE_CLOC=  HAVE_CLOC=
1196    # HAVE_SETRLSTK=
1197    HAVE_STAT=
1198  HAVE_NETCDF=  HAVE_NETCDF=
1199  HAVE_ETIME=  HAVE_ETIME=
1200    IGNORE_TIME=
1201    HAVE_LAPACK=
1202    HAVE_FLUSH=
1203    
1204  MODS=  MODS=
1205  TOOLSDIR=  TOOLSDIR=
# Line 773  SOURCEDIRS= Line 1207  SOURCEDIRS=
1207  INCLUDEDIRS=  INCLUDEDIRS=
1208  STANDARDDIRS="USE_THE_DEFAULT"  STANDARDDIRS="USE_THE_DEFAULT"
1209    
1210    #- local config file
1211    gm_local="genmake_local"
1212    
1213  G2ARGS=  G2ARGS=
1214  BASH=  BASH=
1215  PWD=`pwd`  PWD=`pwd`
1216  MAKE=make  test "x$MAKE" = x  &&  MAKE=make
1217  AWK=awk  test "x$AWK" = x   &&  AWK=awk
1218    EMBED_SRC=
1219  THISHOST=`hostname`  THISHOST=`hostname`
1220  THISCWD=`pwd`  THISCWD=`pwd`
1221  THISDATE=`date`  THISDATE=`date`
# Line 787  MACHINE=`uname -a` Line 1225  MACHINE=`uname -a`
1225  EXECUTABLE=  EXECUTABLE=
1226  EXEHOOK=  EXEHOOK=
1227  EXEDIR=  EXEDIR=
 PACKAGES_CONF=  
1228  IEEE=  IEEE=
1229  if test "x$MITGCM_IEEE" != x ; then  if test "x$MITGCM_IEEE" != x ; then
1230      IEEE=$MITGCM_IEEE      IEEE=$MITGCM_IEEE
# Line 808  FTL_TAF_FLAGS= Line 1245  FTL_TAF_FLAGS=
1245  SVD_TAMC_FLAGS=  SVD_TAMC_FLAGS=
1246  TAMC_EXTRA=  TAMC_EXTRA=
1247    
   
1248  #  The following state can be set directly by command-line switches  #  The following state can be set directly by command-line switches
1249  gm_s1="OPTFILE PDEPEND PDEFAULT MAKEFILE PLATFORM ROOTDIR MODS DISABLE ENABLE"  gm_s1="ROOTDIR STANDARDDIRS MODS PKG_DEPEND PKG_GROUPS DISABLE ENABLE"
1250  gm_s2="FC CPP IEEE MPI JAM DUMPSTATE STANDARDDIRS"  gm_s2="PLATFORM OPTFILE MAKE MAKEFILE MAKEDEPEND FC CC MPI OMP USE_R4"
1251    gm_s3="FEXTRAFLAGS IEEE DEVEL GSL TS PAPIS PCLS PAPI PCL HPMT DUMPSTATE"
1252    
1253  #  The following state is not directly set by command-line switches  #  The following state is not directly set by command-line switches
1254  gm_s3="LN S64 KPP LINK PACKAGES MAKEDEPEND PDEPEND PDEFAULT INCLUDES FFLAGS FOPTIM "  gm_s4="LN S64 LINK PACKAGES INCLUDES FFLAGS FOPTIM"
1255  gm_s4="CFLAGS KFLAGS1 KFLAGS2 LIBS KPPFILES NOOPTFILES NOOPTFLAGS"  gm_s5="CFLAGS LIBS KPP KFLAGS1 KFLAGS2 KPPFILES NOOPTFILES NOOPTFLAGS"
1256  gm_s5="TOOLSDIR SOURCEDIRS INCLUDEDIRS PWD MAKE THISHOST THISUSER THISDATE THISVER MACHINE"  gm_s6="PWD TOOLSDIR SOURCEDIRS INCLUDEDIRS EXEDIR EXECUTABLE EXEHOOK"
1257  gm_s6="EXECUTABLE EXEHOOK EXEDIR PACKAGES_CONF"  gm_s7="THISHOST THISUSER THISDATE THISVER MACHINE FC_NAMEMANGLE"
1258  gm_s7="HAVE_SYSTEM HAVE_FDATE FC_NAMEMANGLE HAVE_ETIME"  gm_s8="HAVE_NETCDF HAVE_SYSTEM HAVE_FDATE HAVE_ETIME HAVE_LAPACK HAVE_FLUSH"
1259    
1260  #  The following are all related to adjoint/tangent-linear stuff  #  The following are all related to adjoint/tangent-linear stuff
1261  gm_s10="AUTODIFF_PKG_USED AD_OPTFILE TAMC TAF AD_TAMC_FLAGS AD_TAF_FLAGS"  gm_s10="AUTODIFF_PKG_USED AD_OPTFILE TAMC TAF AD_TAMC_FLAGS AD_TAF_FLAGS"
1262  gm_s11="FTL_TAMC_FLAGS FTL_TAF_FLAGS SVD_TAMC_FLAGS SVD_TAF_FLAGS"  gm_s11="FTL_TAMC_FLAGS FTL_TAF_FLAGS SVD_TAMC_FLAGS SVD_TAF_FLAGS"
1263  gm_s12="TAF_EXTRA TAMC_EXTRA"  gm_s12="TAF_EXTRA TAMC_EXTRA"
1264    
1265  gm_state="COMMANDL $gm_s1 $gm_s2 $gm_s3 $gm_s4 $gm_s5 $gm_s6 $gm_s7"  gm_state="COMMANDL $gm_s1 $gm_s2 $gm_s3 $gm_s4 $gm_s5 $gm_s6 $gm_s7 $gm_s8"
1266  gm_state="$gm_state $gm_s10 $gm_s11 $gm_s12"  gm_state="$gm_state $gm_s10 $gm_s11 $gm_s12"
1267    
1268  cat <<EOF  cat <<EOF
1269    
1270  GENMAKE :  GENMAKE :
1271    
1272  A program for GENerating MAKEfiles for the MITgcm project.  For a  A program for GENerating MAKEfiles for the MITgcm project.
1273  quick list of options, use "genmake -h" or for more detail see:     For a quick list of options, use "genmake2 -h"
1274    or for more detail see the Developer's HOWTO manual at:
1275    http://mitgcm.org/devel_HOWTO/     http://mitgcm.org/public/docs.html
1276    
1277  EOF  EOF
1278    
1279    LOGFILE="genmake.log"
1280    #- clean-up previous genmake logfiles:
1281    rm -f genmake_state genmake_*optfile $LOGFILE
1282    
1283  echo "===  Processing options files and arguments  ==="  echo "===  Processing options files and arguments  ==="
 gm_local="genmake_local"  
 for i in . $MODS ; do  
     if test -r $i/$gm_local ; then  
         . $i/$gm_local  
         break  
     fi  
 done  
 printf "  getting local config information:  "  
 if test -f $gm_local ; then  
     echo "using $gm_local"  
     . $gm_local  
     # echo "DISABLE=$DISABLE"  
     # echo "ENABLE=$ENABLE"  
 else  
     echo "none found"  
 fi  
1284    
1285  #  echo "$0::$1:$2:$3:$4:$5:$6:$7:"  #echo "$0::$1:$2:$3:$4:$5:$6:$7:"
 #OPTIONS=  
 #n=0  
 #for i ; do  
 #   echo "$i  $n"  
 #   setvar="OPTIONS[$n]='$i'"  
 #   #  echo "  $setvar"  
 #   eval "$setvar"  
 #   n=$(( $n + 1 ))  
 #done  
1286  #parse_options  #parse_options
1287  ac_prev=  ac_prev=
1288  for ac_option in $@ ; do  for ac_option in "$@" ; do
1289    
1290      G2ARGS="$G2ARGS \"$ac_option\""      G2ARGS="$G2ARGS \"$ac_option\""
1291    
# Line 879  for ac_option in $@ ; do Line 1295  for ac_option in $@ ; do
1295          ac_prev=          ac_prev=
1296          continue          continue
1297      fi      fi
1298        
1299      ac_optarg=`expr "x$ac_option" : 'x[^=]*=\(.*\)'`      ac_optarg=`expr "x$ac_option" : 'x[^=]*=\(.*\)'`
1300        
1301      case $ac_option in      case $ac_option in
1302            
1303          -help | --help | -h | --h)          -help | --help | -h | --h)
1304              usage ;;              usage ;;
1305            
1306          -nooptfile | --nooptfile)          -nooptfile | --nooptfile)
1307              OPTFILE="NONE" ;;              OPTFILE="NONE" ;;
1308          -optfile | --optfile | -of | --of)          -optfile | --optfile | -of | --of)
1309              ac_prev=OPTFILE ;;              ac_prev=OPTFILE ;;
1310          -optfile=* | --optfile=* | -of=* | --of=*)          -optfile=* | --optfile=* | -of=* | --of=*)
1311              OPTFILE=$ac_optarg ;;              OPTFILE=$ac_optarg ;;
1312            
1313          -adoptfile | --adoptfile | -adof | --adof)          -adoptfile | --adoptfile | -adof | --adof)
1314              ac_prev=AD_OPTFILE ;;              ac_prev=AD_OPTFILE ;;
1315          -adoptfile=* | --adoptfile=* | -adof=* | --adof=*)          -adoptfile=* | --adoptfile=* | -adof=* | --adof=*)
1316              AD_OPTFILE=$ac_optarg ;;              AD_OPTFILE=$ac_optarg ;;
1317            
1318          -pdepend | --pdepend)          -pdepend | --pdepend)
1319              ac_prev=PDEPEND ;;              ac_prev=PKG_DEPEND ;;
1320          -pdepend=* | --pdepend=*)          -pdepend=* | --pdepend=*)
1321              PDEPEND=$ac_optarg ;;              PKG_DEPEND=$ac_optarg ;;
1322            
1323          -pdefault | --pdefault)          -pgroups | --pgroups)
1324              ac_prev=PDEFAULT ;;              ac_prev=PKG_GROUPS ;;
1325          -pdefault=* | --pdefault=*)          -pgroups=* | --pgroups=*)
1326              PDEFAULT=$ac_optarg ;;              PKG_GROUPS=$ac_optarg ;;
1327            
1328          -make | --make | -m | --m)          -make | --make | -m | --m)
1329              ac_prev=MAKE ;;              ac_prev=MAKE ;;
1330          -make=* | --make=* | -m=* | --m=*)          -make=* | --make=* | -m=* | --m=*)
1331              MAKE=$ac_optarg ;;              MAKE=$ac_optarg ;;
1332            
1333          -bash | --bash)          -bash | --bash)
1334              ac_prev=BASH ;;              ac_prev=BASH ;;
1335          -bash=* | --bash=*)          -bash=* | --bash=*)
1336              BASH=$ac_optarg ;;              BASH=$ac_optarg ;;
1337            
1338          -makedepend | --makedepend | -md | --md)          -makedepend | --makedepend | -md | --md)
1339              ac_prev=MAKEDEPEND ;;              ac_prev=MAKEDEPEND ;;
1340          -makedepend=* | --makedepend=* | -md=* | --md=*)          -makedepend=* | --makedepend=* | -md=* | --md=*)
1341              MAKEDEPEND=$ac_optarg ;;              MAKEDEPEND=$ac_optarg ;;
1342            
1343          -makefile | --makefile | -ma | --ma)          -makefile | --makefile | -mf | --mf)
1344              ac_prev=MAKEFILE ;;              ac_prev=MAKEFILE ;;
1345          -makefile=* | --makefile=* | -ma=* | --ma=*)          -makefile=* | --makefile=* | -mf=* | --mf=*)
1346              MAKEFILE=$ac_optarg ;;              MAKEFILE=$ac_optarg ;;
1347            
1348          -platform | --platform | -pl | --pl | -platform=* | --platform=* | -pl=* | --pl=*)          -platform | --platform | -pl | --pl | -platform=* | --platform=* | -pl=* | --pl=*)
1349              echo "ERROR: The platform option has been removed.  Please specify"              echo "ERROR: The platform option has been removed.  Please specify"
1350              echo "  the build options using the \"optfile\" mechanism."              echo "  the build options using the \"optfile\" mechanism."
1351              echo              echo
1352              usage              usage
1353              ;;              ;;
1354            
1355          -rootdir | --rootdir | -rd | --rd)          -rootdir | --rootdir | -rd | --rd)
1356              ac_prev=ROOTDIR ;;              ac_prev=ROOTDIR ;;
1357          -rootdir=* | --rootdir=* | -rd=* | --rd=*)          -rootdir=* | --rootdir=* | -rd=* | --rd=*)
1358              ROOTDIR=$ac_optarg ;;              ROOTDIR=$ac_optarg ;;
1359            
1360          -mods | --mods | -mo | --mo)          -mods | --mods | -mo | --mo)
1361              ac_prev=MODS ;;              ac_prev=MODS ;;
1362          -mods=* | --mods=* | -mo=* | --mo=*)          -mods=* | --mods=* | -mo=* | --mo=*)
1363              MODS=$ac_optarg ;;              MODS=$ac_optarg ;;
1364            
1365          -disable | --disable)          -disable | --disable)
1366              ac_prev=DISABLE ;;              ac_prev=DISABLE ;;
1367          -disable=* | --disable=*)          -disable=* | --disable=*)
1368              DISABLE=$ac_optarg ;;              DISABLE=$ac_optarg ;;
1369            
1370          -enable | --enable)          -enable | --enable)
1371              ac_prev=ENABLE ;;              ac_prev=ENABLE ;;
1372          -enable=* | --enable=*)          -enable=* | --enable=*)
1373              ENABLE=$ac_optarg ;;              ENABLE=$ac_optarg ;;
1374            
1375          -standarddirs | --standarddirs)          -standarddirs | --standarddirs)
1376              ac_prev=STANDARDDIRS ;;              ac_prev=STANDARDDIRS ;;
1377          -standarddirs=* | --standarddirs=*)          -standarddirs=* | --standarddirs=*)
# Line 965  for ac_option in $@ ; do Line 1381  for ac_option in $@ ; do
1381  #               ac_prev=cpp ;;  #               ac_prev=cpp ;;
1382  #           -cpp=* | --cpp=*)  #           -cpp=* | --cpp=*)
1383  #               CPP=$ac_optarg ;;  #               CPP=$ac_optarg ;;
1384            
1385          -cc | --cc)          -cc | --cc)
1386              ac_prev=CC ;;              ac_prev=CC ;;
1387          -cc=* | --cc=*)          -cc=* | --cc=*)
1388              CC=$ac_optarg ;;              CC=$ac_optarg ;;
1389            
1390          -fortran | --fortran | -fc | --fc)          -fortran | --fortran | -fc | --fc)
1391              ac_prev=FC ;;              ac_prev=FC ;;
1392          -fc=* | --fc=*)          -fc=* | --fc=*)
1393              FC=$ac_optarg ;;              FC=$ac_optarg ;;
1394            
1395          -fs | --fs)          -fs | --fs)
1396              ac_prev=FS ;;              ac_prev=FS ;;
1397          -fs=* | --fs=*)          -fs=* | --fs=*)
1398              FS=$ac_optarg ;;              FS=$ac_optarg ;;
1399            
1400          -fs90 | --fs90)          -fs90 | --fs90)
1401              ac_prev=FS90 ;;              ac_prev=FS90 ;;
1402          -fs90=* | --fs90=*)          -fs90=* | --fs90=*)
1403              FS90=$ac_optarg ;;              FS90=$ac_optarg ;;
1404            
1405            -use_real4 | -use_r4 | -ur4 | --use_real4 | --use_r4 | --ur4 )
1406                USE_R4=true ;;
1407    
1408          -ieee | --ieee)          -ieee | --ieee)
1409              IEEE=true ;;              IEEE=true ;;
1410          -noieee | --noieee)          -noieee | --noieee)
1411              IEEE= ;;              echo "Warning: ignore option '$ac_option' (default is already without '-ieee')" ;;
1412            -devel | --devel)
1413                IEEE=true ; DEVEL=true ;;
1414            -gsl | --gsl)
1415                GSL=true ;;
1416    
1417            -ts | --ts)
1418                TS=true ;;
1419            -papis | --papis)
1420                PAPIS=true ;;
1421            -pcls | --pcls)
1422                PCLS=true ;;
1423            -foolad | --foolad)
1424                FOOLAD=true ;;
1425            -papi | --papi)
1426                PAPI=true ;;
1427            -pcl | --pcl)
1428                PCL=true ;;
1429            -hpmt | --hpmt)
1430                HPMT=true ;;
1431    
1432          -mpi | --mpi)          -mpi | --mpi)
1433              MPI=true ;;              MPI=true ;;
1434          -mpi=* | --mpi=*)          -mpi=* | --mpi=*)
1435              MPIPATH=$ac_optarg              MPIPATH=$ac_optarg
1436              MPI=true ;;              MPI=true ;;
1437            
1438  #       -jam | --jam)          -omp | --omp)
1439  #           JAM=1 ;;              OMP=true ;;
1440  #       -nojam | --nojam)          -omp=* | --omp=*)
1441  #           JAM=0 ;;              OMPFLAG=$ac_optarg
1442                        OMP=true ;;
1443    
1444          -ds | --ds)          -ds | --ds)
1445              DUMPSTATE=t ;;              DUMPSTATE=t ;;
1446            
1447            -extra_flag | --extra_flag)
1448                ac_prev=FEXTRAFLAGS ;;
1449            -extra_flag=* | --extra_flag=*)
1450                FEXTRAFLAGS=$ac_optarg ;;
1451    
1452          -taf_extra | --taf_extra)          -taf_extra | --taf_extra)
1453              ac_prev=TAF_EXTRA ;;              ac_prev=TAF_EXTRA ;;
1454          -taf_extra=* | --taf_extra=*)          -taf_extra=* | --taf_extra=*)
# Line 1015  for ac_option in $@ ; do Line 1459  for ac_option in $@ ; do
1459          -tamc_extra=* | --tamc_extra=*)          -tamc_extra=* | --tamc_extra=*)
1460              TAMC_EXTRA=$ac_optarg ;;              TAMC_EXTRA=$ac_optarg ;;
1461    
1462            -ignoretime | -ignore_time | --ignoretime | --ignore_time)
1463                IGNORE_TIME="-DIGNORE_TIME" ;;
1464    
1465            -es | --es | -embed-source | --embed-source)
1466                EMBED_SRC=t ;;
1467    
1468          -*)          -*)
1469              echo "Error: unrecognized option: "$ac_option              echo "Error: unrecognized option: "$ac_option
1470              usage              usage
1471              ;;              ;;
1472            
1473          *)          *)
1474              echo "Error: unrecognized argument: "$ac_option              echo "Error: unrecognized argument: "$ac_option
1475              usage              usage
1476              ;;              ;;
1477            
1478      esac      esac
1479        
1480  done  done
1481    
1482    printf "  getting local config information:  "
1483    if test -f $gm_local ; then
1484        echo "using $gm_local"
1485        . $gm_local
1486    else
1487        echo "none found"
1488    fi
1489    
1490  if test -f ./.genmakerc ; then  if test -f ./.genmakerc ; then
1491      echo      echo
1492      echo "WARNING: genmake2 has detected a copy of the old-style \"./.genmakerc\""      echo "WARNING: genmake2 has detected a copy of the old-style \"./.genmakerc\""
1493      echo "  file.  This file format is no longer supported.  Please see:"      echo "  file.  This file format is no longer supported.  For directions on"
1494      echo      echo "  how to setup and use the new \"genmake2\" script, please see:"
1495      echo "    http://mitgcm.org/devel_HOWTO/"      echo "    http://mitgcm.org/public/devel_HOWTO/"
1496        echo "  and send an email to MITgcm-support@mitgcm.org if you need help."
1497        echo "WARNING: ignore \"./.genmakerc\" and continue."
1498      echo      echo
     echo "  for directions on how to setup and use the new \"genmake2\" input"  
     echo "  files and send an email to MITgcm-support@mitgcm.org if you want help."  
     echo  
1499  fi  fi
1500    
1501  #  Find the MITgcm ${ROOTDIR}  #  Find the MITgcm ${ROOTDIR}
1502  if test "x${ROOTDIR}" = x ; then  if test "x${ROOTDIR}" = x ; then
1503      tmp=`echo $PWD | sed -e 's/\// /g' | awk '{print $NR}'`      tmp=`echo $PWD | sed -e 's/\// /g' | $AWK '{print $NR}'`
1504      if test "x$tmp" = "xbin" -a -d ../model -a -d ../eesup -a -d ../pkg ; then      if test "x$tmp" = "xbin" -a -d ../model -a -d ../eesupp -a -d ../pkg ; then
1505          ROOTDIR=".."          ROOTDIR=".."
1506      else      else
1507          for d in . .. ../.. ../../.. ../../../.. ../../../../.. ; do          for d in . .. ../.. ../../.. ../../../.. ../../../../.. ; do
1508              if [ -d "$d/model" -a -d "$d/eesupp" -a -d "$d/pkg" ]; then              if [ -d "$d/model" -a -d "$d/eesupp" -a -d "$d/pkg" ]; then
1509                  ROOTDIR=$d                  ROOTDIR=$d
1510                  printf "Warning:  ROOTDIR was not specified but there appears to be"                  printf "Warning: ROOTDIR was not specified ;"
1511                  echo " a copy of MITgcm at \"$ROOTDIR\" so we'll try it."                  echo " try using a local copy of MITgcm found at \"$ROOTDIR\""
1512                  break                  break
1513              fi              fi
1514          done          done
# Line 1069  if test ! -d ${ROOTDIR} ; then Line 1526  if test ! -d ${ROOTDIR} ; then
1526  fi  fi
1527    
1528  #  Find the MITgcm ${THISVER}  #  Find the MITgcm ${THISVER}
1529  if test -f "${ROOTDIR}/doc/tag-index" ; then  version_file="${ROOTDIR}/doc/tag-index"
1530      THISVER=`grep checkpoint ${ROOTDIR}/doc/tag-index | head -1`  if test -f $version_file ; then
1531        THISVER=`$AWK '/^checkpoint/{print $1; exit}' $version_file`
1532    #-  remove ./BUILD_INFO.h file if older than version_file
1533        if test -f ./BUILD_INFO.h -a ./BUILD_INFO.h -ot $version_file ; then
1534            echo "  remove ./BUILD_INFO.h (older than ${version_file})"
1535            rm -f ./BUILD_INFO.h
1536        fi
1537    fi
1538    
1539    if test "x$MAKEFILE" = x ; then
1540        MAKEFILE="Makefile"
1541  fi  fi
1542    
1543  echo "  getting OPTFILE information:  "  echo "  getting OPTFILE information:"
1544  if test "x${OPTFILE}" = x ; then  if test "x${OPTFILE}" = x ; then
1545      if test "x$MITGCM_OF" = x ; then      if test "x$MITGCM_OF" = x ; then
1546          echo "Warning: no OPTFILE specified so we'll look for possible settings"          echo "Warning: no OPTFILE specified so we'll look for possible settings"
1547          printf "\n===  Searching for possible settings for OPTFILE  ===\n"          printf "\n===  Searching for possible settings for OPTFILE  ===\n"
1548          find_possible_configs          find_possible_optfile
1549      else      else
1550          OPTFILE=$MITGCM_OF          OPTFILE=$MITGCM_OF
1551      fi      fi
# Line 1093  if test "x$OPTFILE" != xNONE ; then Line 1560  if test "x$OPTFILE" != xNONE ; then
1560              echo "--please check that variable syntax is bash-compatible"              echo "--please check that variable syntax is bash-compatible"
1561              exit 1              exit 1
1562          fi          fi
1563          if test "x$DUMPSTATE" != xf ; then          if test "x$DUMPSTATE" = xt ; then
1564              cp -f $OPTFILE "genmake_optfile"              cp -f $OPTFILE "genmake_optfile"
1565          fi          fi
1566      else      else
# Line 1102  if test "x$OPTFILE" != xNONE ; then Line 1569  if test "x$OPTFILE" != xNONE ; then
1569      fi      fi
1570  fi  fi
1571    
1572  #  Check for broken systems that cannot correctly distinguish *.F and *.f files  echo "  getting AD_OPTFILE information:"
 # check_for_broken_Ff  
   
 echo "  getting AD_OPTFILE information:  "  
1573  if test "x${AD_OPTFILE}" = x ; then  if test "x${AD_OPTFILE}" = x ; then
1574      if test "x$MITGCM_AD_OF" = x ; then      if test "x$MITGCM_AD_OF" = x ; then
1575          AD_OPTFILE=$ROOTDIR/tools/adjoint_options/adjoint_default          AD_OPTFILE=$ROOTDIR/tools/adjoint_options/adjoint_default
# Line 1123  if test "x${AD_OPTFILE}" != xNONE ; then Line 1587  if test "x${AD_OPTFILE}" != xNONE ; then
1587              echo "--please check that variable syntax is bash-compatible"              echo "--please check that variable syntax is bash-compatible"
1588              exit 1              exit 1
1589          fi          fi
1590          if test "x$DUMPSTATE" != xf ; then          if test "x$DUMPSTATE" = xt ; then
1591              cp -f $AD_OPTFILE "genmake_ad_optfile"              cp -f $AD_OPTFILE "genmake_ad_optfile"
1592          fi          fi
1593      else      else
# Line 1132  if test "x${AD_OPTFILE}" != xNONE ; then Line 1596  if test "x${AD_OPTFILE}" != xNONE ; then
1596      fi      fi
1597  fi  fi
1598    
1599    #====================================================================
1600    #  Set default values if not set by the optfile
1601    #
1602  #  Check that FC, CC, LINK, CPP, S64, LN, and MAKE are defined.  If not,  #  Check that FC, CC, LINK, CPP, S64, LN, and MAKE are defined.  If not,
1603  #  either set defaults or complain and abort!  #  either set defaults or complain and abort!
1604  if test ! "x$BASH" = x ; then  if test ! "x$BASH" = x ; then
# Line 1148  Error: no Fortran compiler: please speci Line 1615  Error: no Fortran compiler: please speci
1615  EOF  EOF
1616      exit 1      exit 1
1617  fi  fi
1618    if test "x$GET_FC_VERSION" != x ; then
1619      echo "Get compiler version using: $FC $GET_FC_VERSION" >> $LOGFILE
1620      ff=`echo $FC | sed 's/ .*//'` ; xx=`echo $ff | sed 's/^./& /' | sed 's/ .*//'`
1621      if test $xx != '/' ; then which $ff >> $LOGFILE ; fi
1622      $FC $GET_FC_VERSION > genmake_fc_vers1 2> genmake_fc_vers2
1623      if test -s genmake_fc_vers1 ; then
1624        cat genmake_fc_vers1 >> $LOGFILE
1625      else
1626        cat genmake_fc_vers2 >> $LOGFILE
1627      fi
1628      echo "<-- compiler version ----" >> $LOGFILE
1629      rm -f genmake_fc_vers1 genmake_fc_vers2
1630    fi
1631    
1632  if test "x$CC" = x ; then  if test "x$CC" = x ; then
1633      CC=cc      look_for_C_compilers
 #     cat <<EOF 1>&2  
 # Error: no C compiler: please specify using one of the following:  
 #   1) within the options file ("CC=...") as specified by "-of=OPTFILE"  
 #   2) the "-cc=XXX" command-line option  
 #   3) the "./genmake_local" file  
 # EOF  
 #     exit 1  
1634  fi  fi
1635    
1636  if test "x$LINK" = x ; then  if test "x$LINK" = x ; then
1637      LINK=$FC      LINK=$FC
1638  fi  fi
# Line 1165  if test "x$MAKE" = x ; then Line 1640  if test "x$MAKE" = x ; then
1640      MAKE="make"      MAKE="make"
1641  fi  fi
1642  if test "x$CPP" = x ; then  if test "x$CPP" = x ; then
1643      CPP=cpp      CPP="cpp -traditional -P"
1644  fi  fi
1645  #EH3 === UGLY ===  #EH3 === UGLY ===
1646  #  The following is an ugly little hack to check for $CPP in /lib/ and  #  The following is an ugly little hack to check for $CPP in /lib/ and
# Line 1192  EOF Line 1667  EOF
1667  else  else
1668      rm -f test_cpp      rm -f test_cpp
1669  fi  fi
1670    
1671  look_for_makedepend  look_for_makedepend
1672    
1673    #  Check that soft-link command is set and usable
1674  if test "x$LN" = x ; then  if test "x$LN" = x ; then
1675      LN="ln -s"      LN="ln -s"
1676  fi  fi
# Line 1202  RETVAL=$? Line 1680  RETVAL=$?
1680  if test "x$RETVAL" != x0 ; then  if test "x$RETVAL" != x0 ; then
1681      cat <<EOF 1>&2      cat <<EOF 1>&2
1682    
1683  Error: The command "ln -s" failed -- please specify a working soft-link  Error: The command "$LN" failed -- please specify a working soft-link
1684    command in the optfile.    command in the optfile.
1685    
1686  EOF  EOF
1687      exit 1      exit 1
1688  fi  fi
1689    test -L genmake_tlink > /dev/null 2>&1
1690    RETVAL=$?
1691    if test "x$RETVAL" = x0 ; then
1692        HAVE_TEST_L=t
1693    fi
1694  rm -f genmake_test_ln genmake_tlink  rm -f genmake_test_ln genmake_tlink
1695    
1696  #  Check for broken *.F/*.f handling and fix if possible  #  Check for broken *.F/*.f handling and fix if possible
# Line 1215  check_for_broken_Ff Line 1698  check_for_broken_Ff
1698    
1699  if test ! "x$MPI" = x ; then  if test ! "x$MPI" = x ; then
1700        echo "  Turning on MPI cpp macros"        echo "  Turning on MPI cpp macros"
1701        DEFINES="$DEFINES -DALLOW_USE_MPI -DALWAYS_USE_MPI"        DEFINES="$DEFINES -DALLOW_USE_MPI"
1702    fi
1703    if test ! "x$OMP" = x ; then
1704          echo "  Add OMPFLAG and turn on OpenMP cpp macros"
1705          FFLAGS="$FFLAGS $OMPFLAG"
1706          F90FLAGS="$F90FLAGS $OMPFLAG"
1707          DEFINES="$DEFINES -DUSE_OMP_THREADING"
1708    fi
1709    
1710    if test ! "x$USE_R4" = x ; then
1711          echo "  Turning on LET_RS_BE_REAL4 cpp flag"
1712          DEFINES="$DEFINES -DLET_RS_BE_REAL4"
1713    fi
1714    
1715    if test ! "x$TS" = x ; then
1716          echo "  Turning on timing per timestep"
1717          if test ! "x$FOOLAD" = x ; then
1718                DEFINES="$DEFINES -DTIME_PER_TIMESTEP_SFP"
1719          else
1720                DEFINES="$DEFINES -DTIME_PER_TIMESTEP"
1721          fi
1722          PACKAGES="$PACKAGES showflops"
1723    fi
1724    if test ! "x$PAPIS" = x ; then
1725          echo "  Turning on PAPI flop summary per timestep"
1726          echo "  Please make sure PAPIINC, PAPILIB are defined"
1727          if test ! "x$FOOLAD" = x ; then
1728                DEFINES="$DEFINES -DUSE_PAPI_FLOPS_SFP"
1729          else
1730                DEFINES="$DEFINES -DUSE_PAPI_FLOPS"
1731          fi
1732          INCLUDES="$INCLUDES $PAPIINC"
1733          LIBS="$LIBS $PAPILIB"
1734          PACKAGES="$PACKAGES showflops"
1735    fi
1736    if test ! "x$PCLS" = x ; then
1737          echo "  Turning on PCL counter summary per timestep"
1738          echo "  Please make sure PCLINC, PCLLIB are defined"
1739          if test ! "x$FOOLAD" = x ; then
1740                DEFINES="$DEFINES -DUSE_PCL_FLOPS_SFP"
1741          else
1742                DEFINES="$DEFINES -DUSE_PCL_FLOPS"
1743          fi
1744          INCLUDES="$INCLUDES $PCLINC"
1745          LIBS="$LIBS $PCLLIB"
1746          PACKAGES="$PACKAGES showflops"
1747    fi
1748    if test ! "x$PAPI" = x ; then
1749          if test ! "x$PAPIS" = x ; then
1750              echo "  PAPI performance analysis and flop summary per timestep cannot co-exist!"
1751              echo "  Sticking with PAPI flop summary per timestep!"
1752          else
1753              echo "  Turning on performance analysis with PAPI"
1754              echo "  Please make sure PAPIINC, PAPILIB are defined"
1755              DEFINES="$DEFINES -DUSE_PAPI"
1756              INCLUDES="$INCLUDES $PAPIINC"
1757              LIBS="$LIBS $PAPILIB"
1758          fi
1759    fi
1760    if test ! "x$PCL" = x ; then
1761          if test ! "x$PCLS" = x ; then
1762              echo "  PCL performance analysis and flop summary per timestep cannot co-exist!"
1763              echo "  Sticking with PCL flop summary per timestep!"
1764          else
1765              echo "  Turning on performance analysis with PCL"
1766              echo "  Please make sure PCLINC, PCLLIB are defined"
1767              DEFINES="$DEFINES -DUSE_PCL"
1768              INCLUDES="$INCLUDES $PCLINC"
1769              LIBS="$LIBS $PCLLIB"
1770          fi
1771    fi
1772    if test ! "x$HPMT" = x ; then
1773          if test ! "x$PAPI" = x ; then
1774              echo "  PAPI and the HPM Toolkit cannot co-exist!"
1775              echo "  Sticking with PAPI!"
1776          else
1777            if test ! "x$PCL" = x ; then
1778              echo "  PCL and the HPM Toolkit cannot co-exist!"
1779              echo "  Sticking with PCL!"
1780            else
1781              echo "  Turning on performance analysis with the HPM Toolkit"
1782              echo "  Please make sure HPMTINC, HPMTLIB are defined"
1783              DEFINES="$DEFINES -DUSE_LIBHPM"
1784              INCLUDES="$INCLUDES $HPMTINC"
1785              LIBS="$LIBS $HPMTLIB"
1786            fi
1787          fi
1788    fi
1789    if test ! "x$GSL" = x ; then
1790          echo "  Turning on use of GSL to control floating point calculations"
1791          echo "  Please make sure GSLINC, GSLLIB are defined"
1792          DEFINES="$DEFINES -DUSE_GSL_IEEE"
1793          INCLUDES="$INCLUDES $GSLINC"
1794          LIBS="$LIBS $GSLLIB"
1795    fi
1796    #- if USE_EXTENDED_SRC is set, add EXTENDED_SRC_FLAG to FFLAGS :
1797    if test ! "x$USE_EXTENDED_SRC" = x ; then
1798          FFLAGS="$FFLAGS $EXTENDED_SRC_FLAG"
1799          F90FIXEDFORMAT="$F90FIXEDFORMAT $EXTENDED_SRC_FLAG"
1800  fi  fi
1801    
1802  printf "\n===  Checking system libraries  ===\n"  printf "\n===  Checking system libraries  ===\n"
1803  printf "  Do we have the system() command using $FC...  "  printf "  Do we have the system() command using $FC...  "
1804  cat > genmake_tcomp.f <<EOF  cat > genmake_tcomp.$FS <<EOF
1805        program hello        program hello
1806        call system('echo hi')        call system('echo hi')
1807        end        end
1808  EOF  EOF
1809  $FC $FFLAGS $DEFINES -o genmake_tcomp genmake_tcomp.f > genmake_tcomp.log 2>&1  $FC $FFLAGS -o genmake_tcomp genmake_tcomp.$FS > genmake_tcomp.log 2>&1
1810  RETVAL=$?  RETVAL=$?
1811  if test "x$RETVAL" = x0 ; then  if test "x$RETVAL" = x0 ; then
1812      HAVE_SYSTEM=t      HAVE_SYSTEM=t
# Line 1238  fi Line 1819  fi
1819  rm -f genmake_tcomp*  rm -f genmake_tcomp*
1820    
1821  printf "  Do we have the fdate() command using $FC...  "  printf "  Do we have the fdate() command using $FC...  "
1822  cat > genmake_tcomp.f <<EOF  cat > genmake_tcomp.$FS <<EOF
1823        program hello        program hello
1824        CHARACTER(128) string        CHARACTER*(128) string
1825        string = ' '        string = ' '
1826        call fdate( string )        call fdate( string )
1827        print *, string        print *, string
1828        end        end
1829  EOF  EOF
1830  $FC $FFLAGS $DEFINES -o genmake_tcomp genmake_tcomp.f > genmake_tcomp.log 2>&1  $FC $FFLAGS -o genmake_tcomp genmake_tcomp.$FS > genmake_tcomp.log 2>&1
1831  RETVAL=$?  RETVAL=$?
1832  if test "x$RETVAL" = x0 ; then  if test "x$RETVAL" = x0 ; then
1833      HAVE_FDATE=t      HAVE_FDATE=t
# Line 1259  fi Line 1840  fi
1840  rm -f genmake_tcomp*  rm -f genmake_tcomp*
1841    
1842  printf "  Do we have the etime() command using $FC...  "  printf "  Do we have the etime() command using $FC...  "
1843  cat > genmake_tcomp.f <<EOF  cat > genmake_tcomp.$FS <<EOF
1844        program hello        program hello
1845        REAL*4 ACTUAL, TARRAY(2)        REAL*4 ACTUAL, TARRAY(2)
1846        EXTERNAL ETIME        EXTERNAL ETIME
# Line 1268  cat > genmake_tcomp.f <<EOF Line 1849  cat > genmake_tcomp.f <<EOF
1849        print *, tarray        print *, tarray
1850        end        end
1851  EOF  EOF
1852  $FC $FFLAGS $DEFINES -o genmake_tcomp genmake_tcomp.f > genmake_tcomp.log 2>&1  $FC $FFLAGS -o genmake_tcomp genmake_tcomp.$FS > genmake_tcomp.log 2>&1
1853  RETVAL=$?  RETVAL=$?
1854  if test "x$RETVAL" = x0 ; then  if test "x$RETVAL" = x0 ; then
1855      HAVE_ETIME=t      HAVE_ETIME=t
# Line 1283  rm -f genmake_tcomp* Line 1864  rm -f genmake_tcomp*
1864  printf "  Can we call simple C routines (here, \"cloc()\") using $FC...  "  printf "  Can we call simple C routines (here, \"cloc()\") using $FC...  "
1865  check_HAVE_CLOC  check_HAVE_CLOC
1866  if test "x$HAVE_CLOC" != x ; then  if test "x$HAVE_CLOC" != x ; then
1867        DEFINES="$DEFINES -DHAVE_CLOC"
1868        echo "yes"
1869    else
1870        echo "no"
1871        if test "x$EMBED_SRC" = xt ; then
1872            echo "    WARNING: you requested file embedding but it has"
1873            echo "      been disabled since C code cannot be called"
1874            EMBED_SRC=
1875        fi
1876    fi
1877    rm -f genmake_t*
1878    
1879    printf "  Can we unlimit the stack size using $FC...  "
1880    check_HAVE_SETRLSTK
1881    if test "x$HAVE_SETRLSTK" = xt ; then
1882        DEFINES="$DEFINES -DHAVE_SETRLSTK"
1883        echo "yes"
1884    else
1885        echo "no"
1886    fi
1887    rm -f genmake_t*
1888    
1889    printf "  Can we register a signal handler using $FC...  "
1890    check_HAVE_SIGREG
1891    if test "x$HAVE_SIGREG" = xt ; then
1892        DEFINES="$DEFINES -DHAVE_SIGREG"
1893        echo "yes"
1894    else
1895        echo "no"
1896    fi
1897    rm -f genmake_t*
1898    
1899    printf "  Can we use stat() through C calls...  "
1900    check_HAVE_STAT
1901    if test "x$HAVE_STAT" != x ; then
1902        DEFINES="$DEFINES -DHAVE_STAT"
1903      echo "yes"      echo "yes"
1904  else  else
1905      echo "no"      echo "no"
1906  fi  fi
1907  rm -f genmake_t*  rm -f genmake_t*
1908    
1909  printf "  Can we create NetCDF-enabled binaries...  "  printf "  Can we create NetCDF-enabled binaries...  "
1910  check_netcdf_libs  check_netcdf_libs
1911  if test "x$HAVE_NETCDF" != x ; then  if test "x$HAVE_NETCDF" != x ; then
1912        DEFINES="$DEFINES -DHAVE_NETCDF"
1913        echo "yes"
1914    else
1915        echo "no"
1916    fi
1917    
1918    printf "  Can we create LAPACK-enabled binaries...  "
1919    check_lapack_libs
1920    if test "x$HAVE_LAPACK" != x ; then
1921        DEFINES="$DEFINES -DHAVE_LAPACK"
1922        echo "yes"
1923    else
1924        echo "no"
1925    fi
1926    
1927    printf "  Can we call FLUSH intrinsic subroutine...  "
1928    check_HAVE_FLUSH
1929    if test "x$HAVE_FLUSH" = xt ; then
1930        DEFINES="$DEFINES -DHAVE_FLUSH"
1931      echo "yes"      echo "yes"
1932  else  else
1933      echo "no"      echo "no"
1934  fi  fi
1935    
1936    DEFINES="$DEFINES $IGNORE_TIME"
1937    if test "x$EMBED_SRC" = xt ; then
1938        build_embed_encode
1939    fi
1940    if test "x$EMBED_SRC" = xt ; then
1941        ENABLE="$ENABLE embed_files"
1942    #   DEFINES="$DEFINES -DHAVE_EMBED_SRC"
1943    fi
1944    
1945  printf "\n===  Setting defaults  ===\n"  printf "\n===  Setting defaults  ===\n"
1946  printf "  Adding MODS directories:  "  printf "  Adding MODS directories: "
1947  for d in $MODS ; do  for d in $MODS ; do
1948      if test ! -d $d ; then      if test ! -d $d ; then
1949          echo          echo
1950          echo "Error: MODS directory \"$d\" not found!"          echo "Error: MODS directory \"$d\" not found!"
1951          exit 1          exit 1
1952      else      else
1953          printf " $d"          printf "$d "
1954          SOURCEDIRS="$SOURCEDIRS $d"          SOURCEDIRS="$SOURCEDIRS $d"
1955          INCLUDEDIRS="$INCLUDEDIRS $d"          INCLUDEDIRS="$INCLUDEDIRS $d"
1956      fi      fi
1957  done  done
1958  echo  echo
1959    
1960  if test "x$MAKEFILE" = x ; then  #if test "x${PLATFORM}" = x ; then
1961      MAKEFILE="Makefile"  #    PLATFORM=$p_PLATFORM
1962  fi  #fi
 if test "x${PLATFORM}" = x ; then  
     PLATFORM=$p_PLATFORM  
 fi  
1963    
1964  if test "x${EXEDIR}" = x ; then  if test "x${EXEDIR}" = x ; then
1965      tmp=`echo $PWD | sed -e 's/\// /g' | awk '{print $NR}'`      tmp=`echo $PWD | sed -e 's/\// /g' | $AWK '{print $NR}'`
1966      if test "x$tmp" = "xbin" -a -d ../exe -a $ROOTDIR = .. ; then      if test "x$tmp" = "xbin" -a -d ../exe -a $ROOTDIR = .. ; then
1967          EXEDIR=../exe          EXEDIR=../exe
1968      else      else
# Line 1341  if test ! -d ${TOOLSDIR} ; then Line 1982  if test ! -d ${TOOLSDIR} ; then
1982      exit 1      exit 1
1983  fi  fi
1984  if test "x$S64" = x ; then  if test "x$S64" = x ; then
1985      S64='$(TOOLSDIR)/set64bitConst.sh'      echo "3.0 _d 3" | ${TOOLSDIR}/set64bitConst.sh > /dev/null 2>&1
1986        RETVAL=$?
1987        if test "x${RETVAL}" = x0 ; then
1988            S64='$(TOOLSDIR)/set64bitConst.sh'
1989        else
1990            echo "3.0 _d 3" | ${TOOLSDIR}/set64bitConst.csh > /dev/null 2>&1
1991            RETVAL=$?
1992            if test "x${RETVAL}" = x0 ; then
1993                S64='$(TOOLSDIR)/set64bitConst.csh'
1994            else
1995                cat <<EOF
1996    
1997    ERROR: neither of the two default scripts:
1998    
1999        ${TOOLSDIR}/set64bitConst.sh
2000        ${TOOLSDIR}/set64bitConst.csh
2001    
2002      are working so please check paths or specify (with \$S64) a
2003      working version of this script.
2004    
2005    EOF
2006                exit 1
2007            fi
2008        fi
2009  fi  fi
2010  THIS_SCRIPT=`echo ${0} | sed 's:'$TOOLSDIR':\$(TOOLSDIR):'`  THIS_SCRIPT=`echo ${0} | sed 's:'$TOOLSDIR':\$(TOOLSDIR):'`
2011    
2012  EXECUTABLE=${EXECUTABLE:-mitgcmuv}  EXECUTABLE=${EXECUTABLE:-mitgcmuv}
2013    
2014    #  Set Standard Code Directories:
2015    if test "x$STANDARDDIRS" = xUSE_THE_DEFAULT ; then
2016        STANDARDDIRS="eesupp model"
2017    fi
2018    #  if model in Standard-Code-Dir, add eesupp (needed to compile model)
2019    echo " $STANDARDDIRS " | grep ' model ' > /dev/null 2>&1
2020    ckM=$?
2021    echo " $STANDARDDIRS " | grep ' eesupp ' > /dev/null 2>&1
2022    ckE=$?
2023    if test $ckM = 0 -a $ckE = 1 ; then
2024        STANDARDDIRS="$STANDARDDIRS eesupp"
2025    fi
2026    
2027  #  We have a special set of source files in eesupp/src which are  #  We have a special set of source files in eesupp/src which are
2028  #  generated from some template source files. We'll make them first so  #  generated from some template source files. We'll make them first so
2029  #  they appear as regular source code  #  they appear as regular source code
2030  if test -r $ROOTDIR"/eesupp/src/Makefile" ; then  if test -r $ROOTDIR"/eesupp/src/Makefile" ; then
2031      echo "  Making source files in eesupp from templates"      echo "  Making source files in eesupp from templates"
2032      ( cd $ROOTDIR"/eesupp/src/" && $MAKE ) > make_eesupp.errors 2>&1      ( cd $ROOTDIR"/eesupp/src/" && $MAKE clean_old && $MAKE \
2033        ) > make_eesupp.errors 2>&1
2034      RETVAL=$?      RETVAL=$?
2035      if test "x${RETVAL}" = x0 ; then      if test "x${RETVAL}" = x0 ; then
2036          rm -f make_eesupp.errors          rm -f make_eesupp.errors
# Line 1363  if test -r $ROOTDIR"/eesupp/src/Makefile Line 2041  if test -r $ROOTDIR"/eesupp/src/Makefile
2041      fi      fi
2042  fi  fi
2043    
2044  #same for exch2  #same for pkg/exch2 and pkg/regrid
2045  if test -r $ROOTDIR"/pkg/exch2/Makefile" ; then  for pdir in exch2 regrid ; do
2046      echo "  Making source files in exch2 from  templates"      if test -r $ROOTDIR"/pkg/${pdir}/Makefile" ; then
2047      ( cd $ROOTDIR"/pkg/exch2/" && $MAKE ) > make_exch2.errors 2>&1          echo "  Making source files in pkg/${pdir} from templates"
2048      RETVAL=$?          ( cd $ROOTDIR"/pkg/"${pdir} && $MAKE clean_old && $MAKE \
2049      if test "x${RETVAL}" = x0 ; then          ) > make_${pdir}.errors 2>&1
2050          rm -f make_exch2.errors          RETVAL=$?
2051      else          if test "x${RETVAL}" = x0 ; then
2052          echo "Error: problem encountered while building source files in exch2:"              rm -f make_${pdir}.errors
2053          cat make_exch2.errors 1>&2          else
2054          exit 1              echo "Error: problem encountered while building source files in pkg/${pdir}:"
2055                cat make_${pdir}.errors 1>&2
2056                exit 1
2057            fi
2058      fi      fi
2059  fi  done
2060    
2061  printf "\n===  Determining package settings  ===\n"  printf "\n===  Determining package settings  ===\n"
2062  if  test "x${PDEPEND}" = x ; then  if  test "x${PKG_DEPEND}" = x ; then
2063      tmp=$ROOTDIR"/pkg/pkg_depend"      tmp=$ROOTDIR"/pkg/pkg_depend"
2064      if test -r $tmp ; then      if test -r $tmp ; then PKG_DEPEND=$tmp ; fi
2065          PDEPEND=$tmp  fi
2066      else  if  test "x${PKG_DEPEND}" = x ; then
2067          echo "Warning:  No package dependency information was specified."          echo "Warning:  No package dependency information was specified."
2068          echo "  Please check that ROOTDIR/pkg/pkg_depend exists."          echo "  Please check that ROOTDIR/pkg/pkg_depend exists."
     fi  
2069  else  else
2070      if test ! -r ${PDEPEND} ; then      if test ! -r ${PKG_DEPEND} ; then
2071          echo "Error:  can't read package dependency info from PDEPEND=\"$PDEPEND\""          echo "Error:  can't read package dependency info from PKG_DEPEND=\"$PKG_DEPEND\""
2072          exit 1          exit 1
2073      fi      fi
2074        echo "  getting package dependency info from  $PKG_DEPEND"
2075    #  Strip the comments and then convert the dependency file into arrays: PNAME, DNAME
2076        get_pdepend_list $PKG_DEPEND
2077  fi  fi
2078  echo "  getting package dependency info from  $PDEPEND"  
2079  #  Strip the comments and then convert the dependency file into  # A default package groups file "$ROOTDIR/pkg/pkg_groups" is provided
2080  #  two arrays: PNAME, DNAME  #  to define the "default_pkg_list" and package groups (for convenience, one
2081  cat $PDEPEND | sed -e 's/#.*$//g' \  #  can specify a group of packages using names like "ocean" and "atmosphere").
2082      | $AWK 'BEGIN{nn=-1;} (NF>0){ for(i=2;i<=NF;i++){nn++; print "PNAME_"nn"="$1"\nDNAME_"nn"="$i}} END{print "nname="nn}' \  if test "x${PKG_GROUPS}" = x ; then
2083      > ./.pd_tmp      tmp=$ROOTDIR"/pkg/pkg_groups"
2084  RETVAL=$?      if test -r $tmp ; then PKG_GROUPS=$tmp ; fi
2085  if test ! "x${RETVAL}" = x0 ; then  fi
2086      echo "Error: unable to parse package dependencies -- please check PDEPEND=\"$PDEPEND\""  if test "x${PKG_GROUPS}" = x ; then
2087      exit 1          echo "Warning:  No package groups information was specified."
2088            echo "  Please check that ROOTDIR/pkg/pkg_groups exists."
2089    else
2090        if test ! -r ${PKG_GROUPS} ; then
2091            echo "Error:  can't read package groups info from PKG_GROUPS=\"$PKG_GROUPS\""
2092            exit 1
2093        fi
2094        echo "  getting package groups info from      $PKG_GROUPS"
2095  fi  fi
 . ./.pd_tmp  
 rm -f ./.pd_tmp  
2096    
2097  #  Search for default packages.  Note that a "$ROOTDIR/pkg/pkg_groups"  #  Search for packages to compile.
2098  #  file should eventually be added so that, for convenience, one can  echo "  checking list of packages to compile:"
2099  #  specify groups of packages using names like "ocean" and "atmosphere".  PKG_LIST=
2100  echo "  checking default package list:  "  if test "x${PKG_LIST}" = x ; then
 if test "x${PDEFAULT}" = x ; then  
2101      for i in "." $MODS ; do      for i in "." $MODS ; do
2102          if test -r $i"/packages.conf" ; then          if test -r $i"/packages.conf" ; then
2103                  PDEFAULT=$i"/packages.conf"                  PKG_LIST=$i"/packages.conf"
2104                  break                  break
2105          fi          fi
2106      done      done
2107  fi  fi
2108  if test "x${PDEFAULT}" = x ; then  if test "x${PKG_LIST}" = x ; then
2109      PDEFAULT="$ROOTDIR/pkg/pkg_default"      pkg_list='default_pkg_list'
2110  fi      if test "x${PKG_GROUPS}" = x ; then
2111  if test "x${PDEFAULT}" = xNONE ; then          echo "Error:  need package groups info to expand pkg_list=\"$pkg_list\""
2112      echo "    default packages file disabled"          exit 1
2113        fi
2114  else  else
2115      if test ! -r $PDEFAULT ; then      if test ! -r $PKG_LIST ; then
2116          echo "Warning:  can't read default packages from PDEFAULT=\"$PDEFAULT\""          echo "Error:  can't read package list from PKG_LIST=\"$PKG_LIST\""
2117            exit 1
2118      else      else
2119          echo "    using PDEFAULT=\"$PDEFAULT\""          echo "    using PKG_LIST=\"$PKG_LIST\""
2120          #  Strip the comments and add all the names          #  Strip the comments and add all the names
2121          def=`cat $PDEFAULT | sed -e 's/#.*$//g' | $AWK '(NF>0){print $0}'`          pkg_list=`cat $PKG_LIST | sed -e 's/#.*$//g' | $AWK '(NF>0){print $0}'`
2122          RETVAL=$?          RETVAL=$?
2123          if test "x${RETVAL}" != x0 ; then          if test "x${RETVAL}" != x0 ; then
2124              printf "Error: can't parse default package list "              printf "Error: can't parse package list "
2125              echo "-- please check PDEFAULT=\"$PDEFAULT\""              echo "-- please check PKG_LIST=\"$PKG_LIST\""
2126              exit 1              exit 1
2127          fi          fi
         for i in $def ; do  
             PACKAGES="$PACKAGES $i"  
         done  
         echo "    before group expansion packages are: $PACKAGES"  
         RET=1  
         while test $RET = 1 ; do expand_pkg_groups; RET=$?; done  
         echo "    after group expansion packages are:  $PACKAGES"  
2128      fi      fi
2129  fi  fi
2130    for i in $pkg_list ; do
2131        PACKAGES="$PACKAGES $i"
2132    done
2133    echo     "    before group expansion packages are:$PACKAGES"
2134    if test "x${PKG_GROUPS}" != x ; then
2135        RET=1
2136        while test $RET = 1 ; do expand_pkg_groups; RET=$?; done
2137        echo "    after group expansion packages are: $PACKAGES"
2138    fi
2139    
2140  echo "  applying DISABLE settings"  echo "  applying DISABLE settings"
2141    echo "" > ./.tmp_pack
2142  for i in $PACKAGES ; do  for i in $PACKAGES ; do
2143      echo $i >> ./.tmp_pack      echo $i >> ./.tmp_pack
2144  done  done
# Line 1474  PACKAGES="$PACKAGES $ENABLE" Line 2166  PACKAGES="$PACKAGES $ENABLE"
2166  for i in $PACKAGES ; do  for i in $PACKAGES ; do
2167      j=`echo $i | sed 's/[-+]//'`      j=`echo $i | sed 's/[-+]//'`
2168      if test ! -d "$ROOTDIR/pkg/$j" ; then      if test ! -d "$ROOTDIR/pkg/$j" ; then
2169          echo "Error: can't find package $i at \"$ROOTDIR/pkg/$i\""          echo "Error: dir '$ROOTDIR/pkg/$i' missing for package '$i'"
2170          exit 1          exit 1
2171      fi      fi
2172      echo $i >> ./.tmp_pack      echo $i >> ./.tmp_pack
2173  done  done
# Line 1484  for i in `grep -v "-" ./.tmp_pack | sort Line 2176  for i in `grep -v "-" ./.tmp_pack | sort
2176      PACKAGES="$PACKAGES $i"      PACKAGES="$PACKAGES $i"
2177  done  done
2178  rm -f ./.tmp_pack  rm -f ./.tmp_pack
2179  echo "    packages are:  $PACKAGES"  echo "    packages are: $PACKAGES"
2180    
2181    #  Check for package MNC: if NetCDF is available, then build the MNC
2182    #  template files ; otherwise, delete mnc from the list of packages.
2183    echo " $PACKAGES " | grep ' mnc ' > /dev/null 2>&1
2184    mnc_in=$?
2185    if test "x$HAVE_NETCDF" != xt ; then
2186        if test "x$mnc_in" = x0 ; then
2187            cat <<EOF
2188    *********************************************************************
2189    WARNING: the "mnc" package was enabled but tests failed to compile
2190      NetCDF applications.  Please check that:
2191    
2192      1) NetCDF is correctly installed for this compiler and
2193      2) the LIBS variable (within the "optfile") specifies the correct
2194           NetCDF library to link against.
2195    
2196      Due to this failure, the "mnc" package is now DISABLED.
2197    *********************************************************************
2198    EOF
2199            PACKAGES=`echo $PACKAGES | sed -e 's/mnc//g'`
2200            DISABLE="$DISABLE mnc"
2201        else
2202        #  this prevent to add mnc (due to pdepend rules) if not available
2203            DISABLE="$DISABLE mnc"
2204        fi
2205    else
2206        # we have NetCDF, we try to build MNC template files
2207        ( cd $ROOTDIR"/pkg/mnc" && $MAKE testclean && $MAKE templates ) > make_mnc.errors 2>&1
2208        RETVAL=$?
2209        if test "x${RETVAL}" = x0 ; then
2210            rm -f make_mnc.errors
2211        else
2212            echo "Error: problem encountered while building source files in pkg/mnc:"
2213            cat make_mnc.errors 1>&2
2214            if test "x$mnc_in" = x0 ; then
2215                exit 1
2216            else
2217                DISABLE="$DISABLE mnc"
2218            fi
2219        fi
2220    fi
2221    
2222    #  Check for package PROFILES: if NetCDF is not available,
2223    #  then delete profiles from the list of available packages.
2224    if test "x$HAVE_NETCDF" != xt ; then
2225        echo " $PACKAGES " | grep ' profiles ' > /dev/null 2>&1
2226        RETVAL=$?
2227        if test "x$RETVAL" = x0 ; then
2228            cat <<EOF
2229    *********************************************************************
2230    WARNING: the "profiles" package was enabled but tests failed to
2231      compile NetCDF applications.  Please check that:
2232    
2233      1) NetCDF is correctly installed for this compiler and
2234      2) the LIBS variable (within the "optfile") specifies the correct
2235           NetCDF library to link against.
2236    
2237      Due to this failure, the "profiles" package is now DISABLED.
2238    *********************************************************************
2239    EOF
2240            PACKAGES=`echo $PACKAGES | sed -e 's/profiles//g'`
2241            DISABLE="$DISABLE profiles"
2242        else
2243        #  this prevent to add profiles (due to pdepend rules) if not available
2244            DISABLE="$DISABLE profiles"
2245        fi
2246    fi
2247    
2248    #  Check for package RADTRANS: if LAPACK is not available,
2249    #  then issue a warning that the direct radtrans solver is not available.
2250    if test "x$HAVE_LAPACK" != xt ; then
2251        echo " $PACKAGES " | grep ' radtrans ' > /dev/null 2>&1
2252        RETVAL=$?
2253        if test "x$RETVAL" = x0 ; then
2254            cat <<EOF
2255    *********************************************************************
2256    WARNING: the "radtrans" package was enabled but tests failed to
2257      compile LAPACK applications.  This means that the direct radtrans
2258      solver is not available and compilation will fail if it is enabled.
2259      If you want to use the direct solver, please check that:
2260    
2261      1) LAPACK is correctly installed for this compiler and
2262      2) the LIBS variable (within the "optfile") specifies the correct
2263         LAPACK library to link against.
2264    *********************************************************************
2265    EOF
2266        fi
2267    fi
2268    
2269  echo "  applying package dependency rules"  if  test "x${PKG_DEPEND}" != x ; then
2270  ck=    echo "  applying package dependency rules"
2271  while test "x$ck" != xtt ; do    ck=
2272      while test "x$ck" != xtt ; do
2273      i=0      i=0
2274      # rtot=${#PNAME[@]}      # rtot=${#PNAME[@]}
2275      rtot=$nname      rtot=$nname
2276      while test $i -lt $rtot ; do      while test $i -le $rtot ; do
2277    
2278          #  Is $pname in the current $PACKAGES list?          #  Is $pname in the current $PACKAGES list?
2279          #  pname=${PNAME[$i]}          #  pname=${PNAME[$i]}
# Line 1504  while test "x$ck" != xtt ; do Line 2285  while test "x$ck" != xtt ; do
2285                  pin="t"                  pin="t"
2286              fi              fi
2287          done          done
2288            #  or in the current $STANDARDDIRS list?
2289            for p in $STANDARDDIRS ; do
2290                if test "x$p" = "x$pname" ; then pin="t" ; fi
2291            done
2292    
2293          #  Is the DNAME entry a (+) or (-) rule ?          #  Is the DNAME entry a (+) or (-) rule ?
2294          tmp="dname=\"\$DNAME_$i\""          tmp="dname=\"\$DNAME_$i\""
# Line 1526  while test "x$ck" != xtt ; do Line 2311  while test "x$ck" != xtt ; do
2311    
2312          #  Do we need to add $dname according to the dependency rules?          #  Do we need to add $dname according to the dependency rules?
2313          if test "x$pin" = xt -a "x$plus" = "x+" -a "x$din" = xf ; then          if test "x$pin" = xt -a "x$plus" = "x+" -a "x$din" = xf ; then
2314                #echo "   " $pname ": need to add :" $dname
2315              in_dis="f"              in_dis="f"
2316              for dis in $DISABLE ; do              for dis in $DISABLE ; do
2317                  if test "x$dis" = "x$dname" ; then                  if test "x$dis" = "x$dname" ; then
# Line 1546  while test "x$ck" != xtt ; do Line 2332  while test "x$ck" != xtt ; do
2332          #  Do we need to get rid of $dname according to the dependency rules?          #  Do we need to get rid of $dname according to the dependency rules?
2333          if test "x$pin" = xt -a "x$plus" = "x-" -a "x$din" = xt; then          if test "x$pin" = xt -a "x$plus" = "x-" -a "x$din" = xt; then
2334              echo "Error: can't satisfy package dependencies:"              echo "Error: can't satisfy package dependencies:"
2335              echo "  \"$pname\" was requested but is disallowed by"              echo "  \"$pname\" was requested but is disallowed by"
2336              echo "  the dependency rules for \"$dname\""              echo "  the dependency rules for \"$dname\""
2337              exit 1              exit 1
2338          fi          fi
2339          i=`echo "$i + 1" | bc -l`          i=`echo "$i + 1" | bc -l`
2340          #i=$(( $i + 1 ))          #i=$(( $i + 1 ))
2341      done      done
2342      ck=$ck"t"      ck=$ck"t"
2343  done    done
2344  echo "    packages are:  $PACKAGES"    echo "    packages are: $PACKAGES"
2345    fi
2346  for i in $PACKAGES ; do  for i in $PACKAGES ; do
2347      adr="$ROOTDIR/pkg/$i"      adr="$ROOTDIR/pkg/$i"
2348      if test -d $adr ; then      if test -d $adr ; then
# Line 1570  for i in $PACKAGES ; do Line 2357  for i in $PACKAGES ; do
2357      fi      fi
2358  done  done
2359    
 #  Build MNC templates and check for ability to build and use NetCDF  
 echo $PACKAGES | grep ' mnc ' > /dev/null 2>&1  
 RETVAL=$?  
 if test "x$RETVAL" = x0 ; then  
     ( cd $ROOTDIR"/pkg/mnc" && $MAKE templates ) > make_mnc.errors 2>&1  
     RETVAL=$?  
     if test "x${RETVAL}" = x0 ; then  
         rm -f make_mnc.errors  
     else  
         echo "Error: problem encountered while building source files in pkg/mnc:"  
         cat make_mnc.errors 1>&2  
         exit 1  
     fi  
     if test "x$HAVE_NETCDF" != xt ; then  
         cat <<EOF  
   
 WARNING: the "mnc" package has been enabled but tests failed to  
   compile and/or execute NetCDF applications.  Please check that:  
   
   1) NetCDF is installed for your compiler and  
   2) the LIBS variable (within the 'optfile") specifies the correct  
        NetCDF library to link against.  
     
 EOF  
     fi  
 fi  
   
2360  # Create a list of #define and #undef to enable/disable packages  # Create a list of #define and #undef to enable/disable packages
2361  PACKAGES_DOT_H=PACKAGES_CONFIG.h  PACKAGES_DOT_H=PACKAGES_CONFIG.h
2362  #  The following UGLY HACK sets multiple "#undef"s and it needs to go  #  The following UGLY HACK sets multiple "#undef"s and it needs to go
2363  #  away.  On 2003-08-12, CNH, JMC, and EH3 agreed that the CPP_OPTIONS.h  #  away.  On 2003-08-12, CNH, JMC, and EH3 agreed that the CPP_OPTIONS.h
2364  #  file would eventually be split up so that all package-related #define  #  file would eventually be split up so that all package-related #define
2365  #  statements could be separated and handled only by genmake.  #  statements could be separated and handled only by genmake.
2366  names=`ls -1 "$ROOTDIR/pkg"`  names=`ls -1 "$ROOTDIR/pkg"`
# Line 1616  for n in $names ; do Line 2376  for n in $names ; do
2376              fi              fi
2377          done          done
2378          if test "x$has_pack" = xf ; then          if test "x$has_pack" = xf ; then
2379              undef=`echo "ALLOW_$n" | $AWK '{print toupper($0)}'`              undef=`echo "ALLOW_$n" | sed -e 'y/abcdefghijklmnopqrstuvwxyz/ABCDEFGHIJKLMNOPQRSTUVWXYZ/'`
2380              DISABLED_PACKAGES="$DISABLED_PACKAGES -U$undef"              DISABLED_PACKAGES="$DISABLED_PACKAGES -U$undef"
2381          fi          fi
2382      fi      fi
2383  done  done
2384  ENABLED_PACKAGES=  ENABLED_PACKAGES=
2385  for i in $PACKAGES ; do  for i in $PACKAGES ; do
2386      def=`echo "ALLOW_$i" | $AWK '{print toupper($0)}'`      def=`echo "ALLOW_$i" | sed -e 'y/abcdefghijklmnopqrstuvwxyz/ABCDEFGHIJKLMNOPQRSTUVWXYZ/'`
2387      ENABLED_PACKAGES="$ENABLED_PACKAGES -D$def"      ENABLED_PACKAGES="$ENABLED_PACKAGES -D$def"
2388  #eh3 DEFINES="$DEFINES -D$def"  #eh3 DEFINES="$DEFINES -D$def"
2389    
2390  #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!  #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!
2391      case $i in      case $i in
2392          aim_v23)          aim_v23)
2393              ENABLED_PACKAGES="$ENABLED_PACKAGES -DALLOW_AIM"              ENABLED_PACKAGES="$ENABLED_PACKAGES -DALLOW_AIM"
2394              echo "Warning: ALLOW_AIM is set to enable aim_v23."              echo "Warning: ALLOW_AIM is set to enable aim_v23."
2395              ;;              ;;
2396      esac      esac
# Line 1638  for i in $PACKAGES ; do Line 2398  for i in $PACKAGES ; do
2398    
2399  done  done
2400    
2401  echo "  Adding STANDARDDIRS"  echo "  Adding STANDARDDIRS='$STANDARDDIRS'"
2402  BUILDDIR=${BUILDDIR:-.}  BUILDDIR=${BUILDDIR:-.}
 if test "x$STANDARDDIRS" = xUSE_THE_DEFAULT ; then  
     STANDARDDIRS="eesupp model"  
 fi  
2403  if test "x$STANDARDDIRS" != x ; then  if test "x$STANDARDDIRS" != x ; then
2404      for d in $STANDARDDIRS ; do      for d in $STANDARDDIRS ; do
2405          adr="$ROOTDIR/$d/src"          adr="$ROOTDIR/$d/src"
# Line 1675  for i in $spaths ; do Line 2432  for i in $spaths ; do
2432      if test -f $try -a -r $try -a "x$CPP_OPTIONS" = x ; then      if test -f $try -a -r $try -a "x$CPP_OPTIONS" = x ; then
2433          echo "    found CPP_OPTIONS=\"$try\""          echo "    found CPP_OPTIONS=\"$try\""
2434          CPP_OPTIONS="$try"          CPP_OPTIONS="$try"
2435          # New safety test: make sure packages are not mentioned in CPP_OPTIONS.h          # New safety test: make sure packages are not mentioned in CPP_OPTIONS.h
2436          for n in $names ; do          for n in $names ; do
2437              test_for_package_in_cpp_options $CPP_OPTIONS $n              test_for_package_in_cpp_options $CPP_OPTIONS $n
2438          done          done
2439      fi      fi
2440      try="$i/CPP_EEOPTIONS.h"      try="$i/CPP_EEOPTIONS.h"
2441      if test -f $try -a -r $try -a "x$CPP_EEOPTIONS" = x ; then      if test -f $try -a -r $try -a "x$CPP_EEOPTIONS" = x ; then
2442          echo "    found CPP_EEOPTIONS=\"$try\""          echo "    found CPP_EEOPTIONS=\"$try\""
2443          # New safety test: make sure MPI is not determined by CPP_EEOPTIONS.h          # New safety test: make sure MPI is not determined by CPP_EEOPTIONS.h
2444  #**** not yet enabled ****  #**** not yet enabled ****
2445  #        test_for_mpi_in_cpp_eeoptions $try  #        test_for_mpi_in_cpp_eeoptions $try
2446  #**** not yet enabled ****  #**** not yet enabled ****
# Line 1697  fi Line 2454  fi
2454    
2455  #  Here, we build the list of files to be "run through" the adjoint  #  Here, we build the list of files to be "run through" the adjoint
2456  #  compiler.  #  compiler.
2457  if test -f ./ad_files ; then  if test -f ./adSrcFiles.tmp ; then
2458      rm -f ./ad_files      rm -f ./adSrcFiles.tmp
2459  fi  fi
2460  echo "  Creating the list of files for the adjoint compiler."  echo "  Creating the list of files for the adjoint compiler."
2461    touch adSrcFiles.tmp
2462  for i in $SOURCEDIRS ; do  for i in $SOURCEDIRS ; do
2463      list_files=`( cd $i && ls -1 *.list 2>/dev/null )`      list_files=`( cd $i && ls -1 *.list 2>/dev/null )`
2464      for j in $list_files ; do      for j in $list_files ; do
2465          cat $i/$j >> ad_files          cat $i/$j >> adSrcFiles.tmp
2466      done      done
2467  done  done
2468    if test ! "x"$FS = "x.f" ; then
2469        cat adSrcFiles.tmp | sed -e "s/\.f/.$FS/g" > adSrcFiles.tmp_f
2470        mv -f adSrcFiles.tmp_f adSrcFiles.tmp
2471    fi
2472    
2473  echo  echo
2474  echo "===  Creating the Makefile  ==="  echo "===  Creating the Makefile  ==="
# Line 1718  for i in $INCLUDEDIRS ; do Line 2479  for i in $INCLUDEDIRS ; do
2479      fi      fi
2480  done  done
2481    
2482    if test ! "x$DIVA" = x ; then
2483        echo "  Creating the pseudo-MPI include directory"
2484        INCLUDES="-I./mpi_headers $INCLUDES"
2485        rm -rf ./mpi_headers
2486        mkdir -p ./mpi_headers
2487    
2488        if test "x$MPIINCLUDEDIR" = x ; then
2489            if test "x$MPIHOME" = x ; then
2490                MPIHOME='/usr'
2491            fi
2492            MPIINCLUDEDIR='$MPIHOME/include'
2493        fi
2494    
2495        if test -r $MPIINCLUDEDIR/mpif.h ; then
2496            for i in $MPI_HEADER_FILES; do
2497                cp -p $MPIINCLUDEDIR/$i ./mpi_headers
2498            done
2499    
2500            perl -i -pe 's/MPI_DISPLACEMENT_CURRENT=-1_8/MPI_DISPLACEMENT_CURRENT=-1/g' mpi_headers/mpif.h
2501        else
2502            echo " We cannot create a copy of mpif.h!"
2503    #       exit -1
2504        fi
2505    fi
2506    
2507  echo "  Determining the list of source and include files"  echo "  Determining the list of source and include files"
2508  rm -rf .links.tmp  rm -rf .links.tmp
2509  mkdir .links.tmp  mkdir .links.tmp
2510    touch .links.tmp/foo
2511    if test ! -r ".links.tmp/foo" ; then
2512        echo
2513        echo "ERROR : something is wrong with your directory permissions or"
2514        echo "   your user file-creation mask (\"umask\") since creating a"
2515        echo "   sub-dir, touch-ing a file within it, and then reading it is"
2516        echo "   not working.  Please try setting your umask to something"
2517        echo "   sane such as:"
2518        echo
2519        echo "      umask 0002"
2520        echo
2521        echo "   and please verify that you have the proper permissions for"
2522        echo "   creating sub-directories and then reading files created"
2523        echo "   within them."
2524        echo
2525        exit 1
2526    fi
2527    rm -f .links.tmp/foo
2528    
2529    if test "x$OPENAD" != x ; then
2530        OAD_DONT_COMPILE="/dev/null"
2531        OAD_DONT_TRANSFORM="/dev/null"
2532        OAD_KEEP_ORIGINAL="/dev/null"
2533        OAD_CB2M_FILES="/dev/null"
2534        OADTOOLS="$TOOLSDIR/OAD_support"
2535        test -f "oadtempflile"  &&  \rm -f "oadtempflile"
2536    cat >> "oadtempflile" <<EOF
2537    $OADTOOLS
2538    EOF
2539        echo "  looking for dontCompile file:  "
2540        for i in "." $MODS ; do
2541            if test -r $i"/dontCompile" ; then
2542                OAD_DONT_COMPILE=$i"/dontCompile"
2543                echo "     found $OAD_DONT_COMPILE"
2544                break
2545            fi
2546        done
2547        echo "  looking for dontTransform file:  "
2548        for i in "." $MODS ; do
2549            if test -r $i"/dontTransform" ; then
2550                OAD_DONT_TRANSFORM=$i"/dontTransform"
2551                echo "     found $OAD_DONT_TRANSFORM"
2552                break
2553            fi
2554        done
2555        echo "  looking for keepOriginal file:  "
2556        for i in "." $MODS ; do
2557            if test -r $i"/keepOriginal" ; then
2558                OAD_KEEP_ORIGINAL=$i"/keepOriginal"
2559                echo "     found $OAD_KEEP_ORIGINAL"
2560                break
2561            fi
2562        done
2563        echo "  looking for cb2mFiles:  "
2564        for i in "." $MODS ; do
2565            if test -r $i"/cb2mFiles" ; then
2566                OAD_CB2M_FILES=$i"/cb2mFiles"
2567                echo "     found $OAD_CB2M_FILES"
2568                break
2569            fi
2570        done
2571        echo "   OpenAD exceptions:  "
2572    fi
2573    
2574  echo "# This section creates symbolic links" > srclinks.tmp  echo "# This section creates symbolic links" > srclinks.tmp
2575  echo "" >> srclinks.tmp  echo "" >> srclinks.tmp
2576  printf 'SRCFILES = '    > srclist.inc  printf 'F77_SRC_FILES = ' > F77srclist.tmp
2577  printf 'CSRCFILES = '   > csrclist.inc  printf 'NON_AD_F77_SRC_FILES = ' > nonADF77srclist.tmp
2578  printf 'F90SRCFILES = ' > f90srclist.inc  printf 'C_SRC_FILES = '   > csrclist.tmp
2579  printf 'HEADERFILES = ' > hlist.inc  printf 'F90_SRC_FILES = ' > F90srclist.tmp
2580  printf 'AD_FLOW_FILES = ' > ad_flow_files.inc  printf 'H_SRC_FILES = '   > hsrclist.tmp
2581    printf 'AD_FLOW_FILES = ' > ad_flow_files.tmp
2582  alldirs="$SOURCEDIRS $INCLUDEDIRS ."  alldirs="$SOURCEDIRS $INCLUDEDIRS ."
2583  for d in $alldirs ; do  for d in $alldirs ; do
2584      deplist=      deplist=
2585      sfiles=`( cd $d; echo *.[h,c,F] *.flow )`      sfiles=`( cd $d; echo *.[h,c,F] *.flow )`
2586      sfiles=`( echo $sfiles; cd $d; echo *.F90 )`      sfiles=`( echo $sfiles; cd $d; echo *.F90 )`
2587        if test "x$OPENAD" != x ; then
2588            sfiles=`( echo $sfiles | grep -v _cb2m\. )`
2589        fi
2590      for sf in $sfiles ; do      for sf in $sfiles ; do
2591          if test ! -r ".links.tmp/$sf" ; then          if test ! -r ".links.tmp/$sf" ; then
2592              if test -f "$d/$sf" ; then              if test -f "$d/$sf" ; then
2593                  case $d/$sf in                  ignore_f=f
2594                    ./$PACKAGES_DOT_H)                  case $d/$sf in
2595                      ./$PACKAGES_DOT_H)
2596                            ignore_f=t
2597                          ;;                          ;;
2598                    ./AD_CONFIG.h)                    ./AD_CONFIG.h)
2599                            ignore_f=t
2600                          ;;                          ;;
2601                    ./FC_NAMEMANGLE.h)                    ./FC_NAMEMANGLE.h)
2602                            ignore_f=t
2603                          ;;                          ;;
2604                    ./BUILD_INFO.h)                    ./BUILD_INFO.h)
2605                            ignore_f=t
2606                          ;;                          ;;
2607                    *)                    ./EMBEDDED_FILES.h)
2608                          touch .links.tmp/$sf                          ignore_f=t
                         deplist="$deplist $sf"  
2609                          ;;                          ;;
2610                  esac                    *)
2611                  extn=`echo $sf | $AWK -F '.' '{print $NF}'`                          #  For the local directory *ONLY*,
2612                  case $extn in                          #  ignore all soft-links
2613                      F)                          if test "x$HAVE_TEST_L" = xt -a "x$d" = x. -a -L $sf ; then
2614                          echo    " \\"  >> srclist.inc                              ignore_f=t
2615                          printf " $sf" >> srclist.inc                          else
2616                                touch .links.tmp/$sf
2617                                deplist="$deplist $sf"
2618                            fi
2619                            ;;
2620                    esac
2621                    if test "x$ignore_f" = xf ; then
2622                        extn=`echo $sf | $AWK -F. '{print $NF}'`
2623                        case $extn in
2624                          F)
2625                            echo    " \\"  >> F77srclist.tmp
2626                            printf " $sf" >> F77srclist.tmp
2627                            if test "x$OPENAD" != x ; then
2628                                basename=${sf%%.F}
2629                                isAD=`egrep ^$basename.f'[  ]*' adSrcFiles.tmp`
2630                                if test -z "$isAD" ; then
2631                                    toBeIgnored=`egrep ^$basename'[      ]*' ${OAD_DONT_COMPILE}`
2632                                    if test -z "$toBeIgnored" ; then
2633                                        echo    " \\"  >> nonADF77srclist.tmp
2634                                        printf " $sf" >> nonADF77srclist.tmp
2635                                    else
2636                                        echo "    not to be compiled   :  $sf"
2637                                    fi
2638                                else # file is initially listed as an AD file we want to exclude it
2639                                     # or we want to retain the untransformed version
2640                                    notToBeTransformed=`egrep ^$basename'[      ]*' ${OAD_DONT_TRANSFORM}`
2641                                    untransformedVersionToBeKept=`egrep ^$basename'[      ]*' ${OAD_KEEP_ORIGINAL}`
2642                                    if test -n "$notToBeTransformed"; then
2643                                        echo "    not to be transformed:  $sf"
2644                                    fi
2645                                    if test -n "$untransformedVersionToBeKept" ; then
2646                                        echo "    original to be kept  :  $sf"
2647                                    fi
2648                                    if test -n "$notToBeTransformed" -o -n "$untransformedVersionToBeKept" ; then
2649                                        echo    " \\"  >> nonADF77srclist.tmp
2650                                        printf " $sf" >> nonADF77srclist.tmp
2651                                    fi
2652                                fi
2653                            fi
2654                          ;;                          ;;
2655                      F90)                      F90)
2656                          echo    " \\"  >> f90srclist.inc                          echo    " \\"  >> F90srclist.tmp
2657                          printf " $sf" >> f90srclist.inc                          printf " $sf" >> F90srclist.tmp
2658                          ;;                          ;;
2659                      c)                      c)
2660                          echo    " \\"  >> csrclist.inc                          echo    " \\"  >> csrclist.tmp
2661                          printf " $sf" >> csrclist.inc                          printf " $sf" >> csrclist.tmp
2662                          ;;                          ;;
2663                      h)                      h)
2664                          echo    " \\"  >> hlist.inc                          echo    " \\"  >> hsrclist.tmp
2665                          printf " $sf" >> hlist.inc                          printf " $sf" >> hsrclist.tmp
2666                          ;;                          ;;
2667                      flow)                      flow)
2668                          echo    " \\"  >> ad_flow_files.inc                          echo    " \\"  >> ad_flow_files.tmp
2669                          printf " $sf" >> ad_flow_files.inc                          printf " $sf" >> ad_flow_files.tmp
2670                          ;;                          ;;
2671                  esac                     esac
2672                    fi
2673              fi              fi
2674          fi          fi
2675      done      done
2676      if test "x$deplist" != x ; then      if test "x$deplist" != x ; then
2677          if test "$d" != "." ; then
2678          echo "" >> srclinks.tmp          echo "" >> srclinks.tmp
2679          echo "#  These files are linked from $d" >> srclinks.tmp          echo "#  These files are linked from $d" >> srclinks.tmp
2680          echo "$deplist :" >> srclinks.tmp          echo "$deplist :" >> srclinks.tmp
2681          printf "\t\$(LN) %s/\$@ \$@\n" $d >> srclinks.tmp  # We need to make sure that the link isn't already there.
2682    # This may happen when make thinks that a header file has to be "remade"
2683    # because a module it depends on has changed.  In this case we do nothing.
2684            printf "\tif [ ! -L \$@ ]; then \$(LN) %s/\$@ \$@; fi\n" $d >> srclinks.tmp
2685          fi
2686      fi      fi
2687  done  done
2688  rm -rf .links.tmp  rm -rf .links.tmp
2689  echo "" >> srclist.inc  echo "" >> F77srclist.tmp
2690  echo "" >> csrclist.inc  echo "" >> nonADF77srclist.tmp
2691  echo "" >> f90srclist.inc  echo "" >> csrclist.tmp
2692  echo "" >> hlist.inc  echo "" >> F90srclist.tmp
2693  echo "" >> ad_flow_files.inc  echo "" >> hsrclist.tmp
2694    echo "" >> ad_flow_files.tmp
2695    
2696    CMDLINE=$0
2697    for xx in "$@" ; do nw=`echo $xx | wc -w`
2698        if test $nw = '1' ; then CMDLINE="$CMDLINE $xx"
2699                            else CMDLINE="$CMDLINE '$xx'" ; fi
2700    done
2701    
2702  if test -f $MAKEFILE ; then  if test -f $MAKEFILE ; then
2703      mv -f $MAKEFILE "$MAKEFILE.bak"      mv -f $MAKEFILE "$MAKEFILE.old"
2704  fi  fi
2705  echo "  Writing makefile: $MAKEFILE"  echo "  Writing makefile: $MAKEFILE"
2706  echo "# Multithreaded + multi-processing makefile for:" > $MAKEFILE  echo "# Multithreaded + multi-processing makefile for:" > $MAKEFILE
# Line 1799  echo "#    $MACHINE" >> $MAKEFILE Line 2708  echo "#    $MACHINE" >> $MAKEFILE
2708  echo "# This makefile was generated automatically on" >> $MAKEFILE  echo "# This makefile was generated automatically on" >> $MAKEFILE
2709  echo "#    $THISDATE" >> $MAKEFILE  echo "#    $THISDATE" >> $MAKEFILE
2710  echo "# by the command:" >> $MAKEFILE  echo "# by the command:" >> $MAKEFILE
2711  echo "#    $0 $G2ARGS" >> $MAKEFILE  echo "#    $CMDLINE"  >> $MAKEFILE
2712  echo "# executed by:" >> $MAKEFILE  echo "# executed by:" >> $MAKEFILE
2713  echo "#    ${THISUSER}@${THISHOST}:${THISCWD}" >> $MAKEFILE  echo "#    ${THISUSER}@${THISHOST}:${THISCWD}" >> $MAKEFILE
2714    
# Line 1810  EXE_SVD=$EXECUTABLE"_svd" Line 2719  EXE_SVD=$EXECUTABLE"_svd"
2719  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
2720  #  #
2721  # OPTFILE="$OPTFILE"  # OPTFILE="$OPTFILE"
2722  #  #
2723  # BUILDDIR     : Directory where object files are written  # BUILDDIR     : Directory where object files are written
2724  # SOURCEDIRS   : Directories containing the source (.F) files  # SOURCEDIRS   : Directories containing the source (.F) files
2725  # INCLUDEDIRS  : Directories containing the header-source (.h) files  # INCLUDEDIRS  : Directories containing the header-source (.h) files
# Line 1821  cat >>$MAKEFILE <<EOF Line 2730  cat >>$MAKEFILE <<EOF
2730  # INCLUDES     : Directories searched for header files  # INCLUDES     : Directories searched for header files
2731  # DEFINES      : Macro definitions for CPP  # DEFINES      : Macro definitions for CPP
2732  # MAKEDEPEND   : Dependency generator  # MAKEDEPEND   : Dependency generator
 # KPP          : Special preprocessor command (specific to platform)  
 # KFLAGS       : Flags for KPP  
2733  # FC           : Fortran compiler command  # FC           : Fortran compiler command
2734  # FFLAGS       : Configuration/debugging options for FC  # FFLAGS       : Configuration/debugging options for FC
2735  # FOPTIM       : Optimization options for FC  # FOPTIM       : Optimization options for FC
# Line 1830  cat >>$MAKEFILE <<EOF Line 2737  cat >>$MAKEFILE <<EOF
2737  # LIBS         : Library flags /or/ additional optimization/debugging flags  # LIBS         : Library flags /or/ additional optimization/debugging flags
2738    
2739  ROOTDIR     = ${ROOTDIR}  ROOTDIR     = ${ROOTDIR}
2740  BUILDDIR    = ${BUILDDIR}    BUILDDIR    = ${BUILDDIR}
2741  SOURCEDIRS  = ${SOURCEDIRS}  SOURCEDIRS  = ${SOURCEDIRS}
2742  INCLUDEDIRS = ${INCLUDEDIRS}  INCLUDEDIRS = ${INCLUDEDIRS}
2743  EXEDIR      = ${EXEDIR}  EXEDIR      = ${EXEDIR}
2744  EXECUTABLE  = \$(EXEDIR)/${EXECUTABLE}  EXECUTABLE  = \$(EXEDIR)/${EXECUTABLE}
2745  TOOLSDIR    = ${TOOLSDIR}  TOOLSDIR    = ${TOOLSDIR}
2746    OADTOOLS    = ${OADTOOLS}
2747    
2748  #eh3  new defines for the adjoint work  #eh3  new defines for the adjoint work
2749  AUTODIFF    = ${ROOTDIR}/pkg/autodiff  AUTODIFF    = ${ROOTDIR}/pkg/autodiff
# Line 1848  DISABLED_PACKAGES = ${DISABLED_PACKAGES} Line 2756  DISABLED_PACKAGES = ${DISABLED_PACKAGES}
2756    
2757  # These files are created by Makefile  # These files are created by Makefile
2758  SPECIAL_FILES = ${PACKAGES_DOT_H} AD_CONFIG.h FC_NAMEMANGLE.h BUILD_INFO.h  SPECIAL_FILES = ${PACKAGES_DOT_H} AD_CONFIG.h FC_NAMEMANGLE.h BUILD_INFO.h
   
2759  EOF  EOF
2760    
2761  #  Note: figure out some way to add Hyades JAM libraries here  if test "x$EMBED_SRC" = xt ; then
2762        echo "EMBEDDED_FILES = EMBEDDED_FILES.h" >>$MAKEFILE
2763    else
2764        echo "EMBEDDED_FILES = " >>$MAKEFILE
2765    fi
2766    
2767  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
2768  # Unix ln (link)  # Unix ln (link)
2769  LN = ${LN}  LN = ${LN}
 # C preprocessor  
 CPP = cat \$< | ${S64} | ${CPP}  
2770  # Dependency generator  # Dependency generator
2771  MAKEDEPEND = ${MAKEDEPEND}  MAKEDEPEND = ${MAKEDEPEND}
2772  # Special preprocessor (KAP on DECs, FPP on Crays)  # Special preprocessor (KAP on DECs, FPP on Crays)
# Line 1879  INCLUDES = ${INCLUDES} Line 2788  INCLUDES = ${INCLUDES}
2788  KFLAGS1 = ${KFLAGS1}  KFLAGS1 = ${KFLAGS1}
2789  KFLAGS2 = ${KFLAGS2}  KFLAGS2 = ${KFLAGS2}
2790  # Optim./debug for FC  # Optim./debug for FC
2791  FFLAGS = ${FFLAGS}  FFLAGS = ${FFLAGS} ${FEXTRAFLAGS}
2792  FOPTIM = ${FOPTIM}  FOPTIM = ${FOPTIM}
2793  # Optim./debug for FC  # Optim./debug for FC
2794  F90FLAGS = ${F90FLAGS}  F90FLAGS = ${F90FLAGS}
2795  F90OPTIM = ${F90OPTIM}  F90OPTIM = ${F90OPTIM}
2796    F90FIXEDFORMAT = ${F90FIXEDFORMAT}
2797  # Flags for CC  # Flags for CC
2798  CFLAGS = ${CFLAGS}  CFLAGS = ${CFLAGS}
2799  # Files that should not be optimized  # Files that should not be optimized
2800  NOOPTFILES = ${NOOPTFILES}  NOOPTFILES = ${NOOPTFILES}
2801  NOOPTFLAGS = ${NOOPTFLAGS}  NOOPTFLAGS = ${NOOPTFLAGS}
2802  # Flags and libraries needed for linking  # Flags and libraries needed for linking
2803  LIBS = ${LIBS} \$(XLIBS)  LIBS = ${LIBS}
2804  # Name of the Mekfile  # Name of the makefile
2805  MAKEFILE=${MAKEFILE}  MAKEFILE = ${MAKEFILE}
2806    # Name of the make program
2807    MAKE = ${MAKE}
2808    
2809  EOF  EOF
2810    
2811  cat srclist.inc       >> $MAKEFILE  cat F77srclist.tmp      >> $MAKEFILE
2812  cat csrclist.inc      >> $MAKEFILE  cat nonADF77srclist.tmp >> $MAKEFILE
2813  cat f90srclist.inc    >> $MAKEFILE  cat csrclist.tmp        >> $MAKEFILE
2814  cat hlist.inc         >> $MAKEFILE  cat F90srclist.tmp      >> $MAKEFILE
2815  cat ad_flow_files.inc >> $MAKEFILE  cat hsrclist.tmp        >> $MAKEFILE
2816    cat ad_flow_files.tmp   >> $MAKEFILE
2817    
2818    rm -f F77srclist.tmp nonADF77srclist.tmp csrclist.tmp F90srclist.tmp hsrclist.tmp ad_flow_files.tmp
2819    
2820  echo >> $MAKEFILE  echo >> $MAKEFILE
2821  echo 'F77FILES =  $(SRCFILES:.F=.'$FS')'      >> $MAKEFILE  
2822  echo 'F90FILES =  $(F90SRCFILES:.F=.'$FS90')' >> $MAKEFILE  # add definitions for preprocessed sources
2823  echo 'OBJFILES =  $(SRCFILES:.F=.o) $(CSRCFILES:.c=.o) $(F90SRCFILES:.F90=.o)' >> $MAKEFILE  # and note that not all systems allow case sensitive extensions
2824    # hence the $FS and $FS90 here.
2825    # for fixed format f90 files we use ff90 or FF90 resp
2826    # but these are not expected to be the original source files
2827    
2828    echo 'F77_PP_SRC_FILES = $(F77_SRC_FILES:.F=.'$FS')'      >> $MAKEFILE
2829    echo 'F90_PP_SRC_FILES = $(F90_SRC_FILES:.F90=.'$FS90')' >> $MAKEFILE
2830    echo 'OBJFILES= $(F77_SRC_FILES:.F=.o) $(C_SRC_FILES:.c=.o) $(F90_SRC_FILES:.F90=.o)' >> $MAKEFILE
2831    echo 'FLOWFILES =  $(AD_FLOW_FILES:.flow=.flowdir)' >> $MAKEFILE
2832  echo >> $MAKEFILE  echo >> $MAKEFILE
2833  echo '.SUFFIXES:' >> $MAKEFILE  echo '.SUFFIXES:' >> $MAKEFILE
2834  echo '.SUFFIXES: .o .'$FS' .p .F .c .'$FS90' .F90' >> $MAKEFILE  echo '.SUFFIXES: .o .'$FS' .p .F .c .f'$FS90' .'$FS90' .FF90 .F90 .flowdir .flow' >> $MAKEFILE
 rm -f srclist.inc csrclist.inc hlist.inc flist.tmp clist.tmp f90srclist.inc  
 rm -f ad_flow_files.inc  
2835    
2836  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
2837    
2838  all: \$(EXECUTABLE)  all: fwd_exe_target
2839  \$(EXECUTABLE): \$(SPECIAL_FILES) \$(SRCFILES) \$(CSRCFILES) \$(HEADERFILES) \$(F90SRCFILES) \$(OBJFILES)  fwd_exe_target:
2840            @echo Update AD_CONFIG.h and make \$(EXECUTABLE)
2841            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Forward version" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN > ad_config.template
2842            @cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
2843            @-rm -f ad_config.template
2844            \$(MAKE) -f \$(MAKEFILE) \$(EXECUTABLE)
2845    
2846    \$(EXECUTABLE): \$(SPECIAL_FILES) \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) \$(OBJFILES) \$(EMBEDDED_FILES)
2847          @echo Creating \$@ ...          @echo Creating \$@ ...
2848          \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) \$(LIBS)          \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) \$(LIBS)
2849    
2850  depend:  depend:
2851          @make links          @\$(MAKE) -f \$(MAKEFILE) links
2852          \$(MAKEDEPEND) -o .$FS \$(DEFINES) \$(INCLUDES) \$(SRCFILES)          \$(MAKEDEPEND) -f \$(MAKEFILE) -o .$FS \$(DEFINES) \$(INCLUDES) \$(F77_SRC_FILES)
2853          \$(TOOLSDIR)/f90mkdepend >> \$(MAKEFILE)          \$(TOOLSDIR)/f90mkdepend >> \$(MAKEFILE)
2854          -rm -f makedepend.out          -rm -f makedepend.out
2855    
2856  links: \$(SRCFILES) \$(CSRCFILES) \$(HEADERFILES) \$(F90SRCFILES) \$(SPECIAL_FILES)  lib: libmitgcmuv.a
2857    
2858    libmitgcmuv.a: \$(OBJFILES)
2859            ar rcv libmitgcmuv.a \$(OBJFILES)
2860            ar d   libmitgcmuv.a main.o
2861    
2862    obj: \$(OBJFILES)
2863    
2864  small_f: \$(F77FILES) \$(F90FILES)  links: \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) \$(SPECIAL_FILES)
2865    
2866    small_f: \$(F77_PP_SRC_FILES) \$(F90_PP_SRC_FILES)
2867    
2868  output.txt: \$(EXECUTABLE)  output.txt: \$(EXECUTABLE)
2869          @printf 'running ... '          @printf 'running ... '
2870          @\$(EXECUTABLE) > \$@          @\$(EXECUTABLE) > \$@
2871    
2872    # remove most of the files that "make" generates
2873  clean:  clean:
2874          -rm -rf *.o *.$FS *.p *.$FS90 *.mod ${RMFILES} work.{pc,pcl} *.template          -rm -rf *.p *.$FS90 *.mod ${RMFILES} work.{pc,pcl} *.template
2875            -rm -rf *.o
2876            -rm -rf *.$FS *.flowdir
2877            -rm -rf *.f$FS90 \$(AD_CLEAN) ad_input*
2878    
2879    # remove most of the files that "make" and "make depend" generate
2880  Clean:  Clean:
2881          @make clean          @\$(MAKE) -f \$(MAKEFILE) clean
2882          @make cleanlinks          @\$(MAKE) -f \$(MAKEFILE) cleanlinks
2883          -rm -f \$(SPECIAL_FILES)          -rm -f \$(SPECIAL_FILES) f90mkdepend.log $MAKEFILE.old
2884          -rm -f genmake_state genmake_*optfile genmake_warnings make.log run.log *.bak          -rm -f taf_command taf_output taf_ad.log taf_ad_flow.log taf_ftl.log
2885            -rm -f genmake_warnings genmake_errors make.log
2886    
2887    # remove also the executable, files that "genmake2" generates (except Makefile)
2888    #         and output from a run (plus log files from testreport)
2889  CLEAN:  CLEAN:
2890          @make Clean          @\$(MAKE) -f \$(MAKEFILE) Clean
2891            -rm -f \$(EXECUTABLE) \$(EXE_AD) \$(EXE_FTL) *.bak
2892            -rm -f $LOGFILE genmake_state genmake_*optfile
2893            -rm -f SIZE.h.mpi genmake.tr_log make.tr_log
2894          -find \$(EXEDIR) -name "*.meta" -exec rm {} \;          -find \$(EXEDIR) -name "*.meta" -exec rm {} \;
2895          -find \$(EXEDIR) -name "*.data" -exec rm {} \;          -find \$(EXEDIR) -name "*.data" -exec rm {} \;
2896          -find \$(EXEDIR) -name "fort.*" -exec rm {} \;          -find \$(EXEDIR) -name "fort.*" -exec rm {} \;
2897          -rm -f \$(EXECUTABLE) output.txt STD*          -rm -f *.txt STD* *diagnostics.log datetime
2898            -rm -f *_MIT_CE_000.opt0000 costfunction*0000
2899            -rm -rf mnc_test_*
2900    
 #eh3 Makefile: makefile  
2901  makefile:  makefile:
2902          $THIS_SCRIPT $G2ARGS          $THIS_SCRIPT $G2ARGS
2903  cleanlinks:  cleanlinks:
2904          -find . -type l -exec rm {} \;          -find . -type l -exec rm {} \;
2905    
2906  # Special targets (SPECIAL_FILES) which are create by make  # Special targets (SPECIAL_FILES) which are created by make
2907  ${PACKAGES_DOT_H}:  ${PACKAGES_DOT_H}:
2908          @echo Creating \$@ ...          @echo Creating \$@ ...
2909          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bPACKAGES_CONFIG_H "Disabled packages:" \$(DISABLED_PACKAGES) " " "Enabled packages:" \$(ENABLED_PACKAGES) > \$@          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines -bPACKAGES_CONFIG_H "Disabled packages:" \$(DISABLED_PACKAGES) " " "Enabled packages:" \$(ENABLED_PACKAGES) > \$@
2910  AD_CONFIG.h:  AD_CONFIG.h:
2911          @echo Creating \$@ ...          @echo Creating \$@ ...
2912          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > \$@          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Default version" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN > \$@
2913  FC_NAMEMANGLE.h:  FC_NAMEMANGLE.h:
2914          @echo Creating \$@ ...          @echo Creating \$@ ...
2915          echo "$FC_NAMEMANGLE" > \$@          echo "$FC_NAMEMANGLE" > \$@
# Line 1971  test ! "x$THISUSER" = x && echo "      -echo Line 2923  test ! "x$THISUSER" = x && echo "      -echo
2923  test ! "x$THISDATE" = x && echo "       -echo \"#define THISDATE '$THISDATE'\" >> \$@" >> $MAKEFILE  test ! "x$THISDATE" = x && echo "       -echo \"#define THISDATE '$THISDATE'\" >> \$@" >> $MAKEFILE
2924  test ! "x$THISHOST" = x && echo "       -echo \"#define THISHOST '$THISHOST'\" >> \$@" >> $MAKEFILE  test ! "x$THISHOST" = x && echo "       -echo \"#define THISHOST '$THISHOST'\" >> \$@" >> $MAKEFILE
2925    
2926    if test "x$EMBED_SRC" = xt ; then
2927        cat >>$MAKEFILE <<EOF
2928    
2929    decode_files.o : EMBEDDED_FILES.h
2930    
2931    ##  \$(F77_PP_SRC_FILES)
2932    all_fF.tar.gz : \$(SPECIAL_FILES) \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) \$(F77_PP_SRC_FILES) Makefile
2933            @echo Creating \$@ ...
2934            -tar -hcf all_fF.tar \$(SPECIAL_FILES) \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) \$(F77_PP_SRC_FILES) Makefile
2935            -rm -f all_fF.tar.gz
2936            -gzip all_fF.tar
2937    
2938    EMBEDDED_FILES.h : all_fF.tar.gz
2939            @echo Creating \$@ ...
2940            -\${ROOTDIR}/tools/embed_encode/encode_files EMBEDDED_FILES.h all_fF.tar.gz
2941    
2942    EOF
2943    fi
2944    
2945  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
2946    
2947  # The normal chain of rules is (  .F - .$FS - .o  )  # The normal chain of rules is (  .F - .$FS - .o  )
2948    
2949  %.o : %.F  ## This nullifies any default implicit rules concerning these two file types:
2950    ## %.o : %.F
2951    
2952    # C preprocessing and replacing the _d in constants:
2953    CPPCMD = cat \$< | ${CPP} \$(DEFINES) \$(INCLUDES) | ${S64}
2954    
2955  .F.$FS:  .F.$FS:
2956          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@          \$(CPPCMD)  > \$@
2957  .$FS.o:  .$FS.o:
2958          \$(FC) \$(FFLAGS) \$(FOPTIM) -c \$<          \$(FC) \$(FFLAGS) \$(FOPTIM) -c \$<
2959    .F.o:
2960            \$(FC) \$(FFLAGS) \$(FOPTIM) -c \$<
2961  .F90.$FS90:  .F90.$FS90:
2962          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@          \$(CPPCMD)  > \$@
2963    .FF90.f$FS90:
2964            \$(CPPCMD)  > \$@
2965  .$FS90.o:  .$FS90.o:
2966          \$(F90C) \$(F90FLAGS) \$(F90OPTIM) -c \$<          \$(F90C) \$(F90FLAGS) \$(F90OPTIM) -c \$<
2967    .f$FS90.o:
2968            cp \$< \$(basename  \$<).f90
2969            \$(F90C) \$(F90FLAGS) \$(F90OPTIM) -c \$(F90FIXEDFORMAT) \$(basename  \$<).f90
2970  .c.o:  .c.o:
2971          \$(CC) \$(CFLAGS) -c \$<          \$(CC) \$(CFLAGS) \$(DEFINES) \$(INCLUDES) -c \$<
2972    .flow.flowdir:
2973            \$(CPPCMD) > \$@
2974    
2975  # Special exceptions that use the ( .F - .p - .$FS - .o ) rule-chain  # Special exceptions that use the ( .F - .p - .$FS - .o ) rule-chain
2976  .F.p:  .F.p:
2977          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@          \$(CPPCMD) > \$@
2978  .p.$FS:  .p.$FS:
2979          \$(KPP) \$(KFLAGS1)\$@ \$(KFLAGS2) \$<          \$(KPP) \$(KFLAGS1)\$@ \$(KFLAGS2) \$<
2980    
2981    EOF
2982    
2983  #=========================================  #=========================================
2984  #===  Automatic Differentiation Rules  ===  #===  Automatic Differentiation Rules  ===
2985    #===  for TAMC/TAF  ======================
2986    
2987    if test "x$OPENAD" = x ; then
2988    
2989    cat >>$MAKEFILE <<EOF
2990    
2991  TAMC           = ${TAMC}  TAMC           = ${TAMC}
2992  TAF            = ${TAF}  TAF            = ${TAF}
# Line 2010  ad_vars="$ad_vars FTL_TAMC_FLAGS FTL_TAF Line 3001  ad_vars="$ad_vars FTL_TAMC_FLAGS FTL_TAF
3001  ad_vars="$ad_vars SVD_TAMC_FLAGS SVD_TAF_FLAGS"  ad_vars="$ad_vars SVD_TAMC_FLAGS SVD_TAF_FLAGS"
3002  for i in $ad_vars ; do  for i in $ad_vars ; do
3003      name=$i      name=$i
3004      t1="t2=\$"`echo $i`      t1="t2=\$"`echo "$i"`
3005      eval $t1      eval $t1
3006      printf "%-20s = " $name >> $MAKEFILE      printf "%-20s = " $name >> $MAKEFILE
3007      echo $t2 >> $MAKEFILE      echo "$t2" | sed -e 's| \+| |g' >> $MAKEFILE
3008  done  done
3009    
3010  echo "  Add the source list for AD code generation"  echo "  Add the source list for AD code generation"
3011  echo >> $MAKEFILE  echo >> $MAKEFILE
3012  printf "AD_FILES = " >> $MAKEFILE  printf "AD_FILES = " >> $MAKEFILE
3013  AD_FILES=`cat ad_files`  AD_FILES=`cat adSrcFiles.tmp`
3014  for i in $AD_FILES ; do  for i in $AD_FILES ; do
3015      echo    " \\" >> $MAKEFILE      echo    " \\" >> $MAKEFILE
3016      printf " $i" >> $MAKEFILE      printf " $i" >> $MAKEFILE
3017  done  done
3018  echo >> $MAKEFILE  echo >> $MAKEFILE
3019  rm -f ad_files  rm -f adSrcFiles.tmp
3020    
3021  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
3022    
3023  # ... AD ...  # ... AD ...
3024  adall: ad_taf  adall: ad_exe_target
3025  adtaf: ad_taf_output.f  adtaf: ad_taf_output.$FS
3026  adtamc: ad_tamc_output.f  adtamc: ad_tamc_output.$FS
3027    
3028    ad_exe_target:
3029            @echo Update AD_CONFIG.h and make \$(EXE_AD)
3030            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Adjoint version" -bAD_CONFIG_H -DALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN > ad_config.template
3031            @cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
3032            @-rm -f ad_config.template
3033            \$(MAKE) -f \$(MAKEFILE) \$(EXE_AD)
3034    
3035  ad_input_code.f: \$(AD_FILES) \$(HEADERFILES)  ad_input_code.$FS: \$(AD_FILES) \$(AD_FLOW_FILES)
3036          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -DALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ad_config.template          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Adjoint version" -bAD_CONFIG_H -DALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN > ad_config.template
3037          cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h          cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
3038          -rm -f ad_config.template          @-rm -f ad_config.template
3039          @make \$(F77FILES)          @\$(MAKE) -f \$(MAKEFILE) \$(F77_PP_SRC_FILES)
3040          @make \$(AD_FLOW_FILES)          @\$(MAKE) -f \$(MAKEFILE) \$(FLOWFILES)
3041          cat \$(AD_FLOW_FILES) \$(AD_FILES) > ad_input_code.f          cat \$(FLOWFILES) \$(AD_FILES) | sed -f \$(TOOLSDIR)/remove_comments_sed > ad_input_code.$FS
3042    
3043  ad_taf_output.f: ad_input_code.f  ad_taf_output.$FS: ad_input_code.$FS
3044          \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.f          \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.$FS
3045          cat ad_input_code_ad.f | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.f          ls -l ad_input_code_ad.$FS
3046            cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.$FS
3047    
3048  adtafonly:  adtafonly:
3049          \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.f          \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.$FS
3050          cat ad_input_code_ad.f | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.f          ls -l ad_input_code_ad.$FS
3051            cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.$FS
3052    
3053    \$(EXE_AD): \$(SPECIAL_FILES) \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) ad_taf_output.o \$(OBJFILES) \$(EMBEDDED_FILES)
3054            \$(LINK) -o \${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_taf_output.o \$(LIBS)
3055    
3056    ad_tamc_output.$FS: ad_input_code.$FS
3057            \$(TAMC) \$(AD_TAMC_FLAGS) \$(TAMC_EXTRA) ad_input_code.$FS
3058            cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_tamc_output.$FS
3059    
3060  ad_taf: ad_taf_output.o \$(OBJFILES)  ad_tamc: ad_tamc_output.o \$(OBJFILES)
3061          \$(LINK) -o ${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_taf_output.o \$(LIBS)          \$(LINK) -o ${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_tamc_output.o \$(LIBS)
3062    
3063  ad_tamc_output.f: ad_input_code.f  adonlyfwd:
3064          \$(TAMC) \$(AD_TAMC_FLAGS) \$(TAMC_EXTRA) ad_input_code.f          patch < \$(TOOLSDIR)/ad_taf_output.f.onlyfwd.diff
         cat ad_input_code_ad.f | sed -f \$(TOOLSDIR)/adjoint_sed > ad_tamc_output.f  
3065    
3066  ad_tamc: ad_tamc_output.o \$(OBJFILES)  adtrick:
3067          \$(LINK) -o ${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_tamc_output.o \$(LIBS)          patch < \$(TOOLSDIR)/ad_taf_output.f.adtrick.diff
3068    
3069    adobj: ad_taf_output.o \$(OBJFILES)
3070    
3071  # ... FTL ...  # ... FTL ...
3072  ftlall: ftl_taf  ftlall: ftl_exe_target
3073  ftltaf: ftl_taf_output.f  ftltaf: ftl_taf_output.$FS
3074  ftltamc: ftl_tamc_output.f  ftltamc: ftl_tamc_output.$FS
3075    
3076  ftl_input_code.f: \$(AD_FILES) \$(HEADERFILES)  ftl_exe_target:
3077          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ftl_config.template          @echo Update AD_CONFIG.h and make \$(EXE_FTL)
3078          cmp ftl_config.template AD_CONFIG.h || cat ftl_config.template > AD_CONFIG.h          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "TangLin version" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN > ad_config.template
3079          -rm -f ftl_config.template          @cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
3080          @make \$(F77FILES)          @-rm -f ad_config.template
3081          @make \$(AD_FLOW_FILES)          \$(MAKE) -f \$(MAKEFILE) \$(EXE_FTL)
         cat \$(AD_FLOW_FILES) \$(AD_FILES) > ftl_input_code.f  
   
 ftl_taf_output.f: ftl_input_code.f  
         \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.f  
         cat ftl_input_code_ftl.f | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.f  
   
 ftltafonly:  
         \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.f  
         cat ftl_input_code_ftl.f | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.f  
3082    
3083  ftl_taf: ftl_taf_output.o \$(OBJFILES)  ftl_input_code.$FS: \$(AD_FILES)
3084          \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_taf_output.o \$(LIBS)          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "TangLin version" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN > ad_config.template
3085            cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
3086            @-rm -f ad_config.template
3087            @\$(MAKE) -f \$(MAKEFILE) \$(F77_PP_SRC_FILES)
3088            @\$(MAKE) -f \$(MAKEFILE) \$(AD_FLOW_FILES)
3089            cat \$(AD_FLOW_FILES) \$(AD_FILES) | sed -f \$(TOOLSDIR)/remove_comments_sed > ftl_input_code.$FS
3090    
3091    ftl_taf_output.$FS: ftl_input_code.$FS
3092            \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.$FS
3093            ls -l ftl_input_code_ftl.$FS
3094            cat ftl_input_code_ftl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.$FS
3095    
3096  ftl_tamc_output.f: ftl_input_code.f  ftltafonly:
3097          \$(TAMC) \$(FTL_TAMC_FLAGS) \$(TAMC_EXTRA) ftl_input_code.f          \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.$FS
3098          cat ftl_input_code_ftl.f | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_tamc_output.f          ls -l ftl_input_code_ftl.$FS
3099            cat ftl_input_code_ftl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.$FS
3100    
3101    \$(EXE_FTL): \$(SPECIAL_FILES) \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) ftl_taf_output.o \$(OBJFILES) \$(EMBEDDED_FILES)
3102            \$(LINK) -o \${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_taf_output.o \$(LIBS)
3103    
3104    ftl_tamc_output.$FS: ftl_input_code.$FS
3105            \$(TAMC) \$(FTL_TAMC_FLAGS) \$(TAMC_EXTRA) ftl_input_code.$FS
3106            cat ftl_input_code_ftl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_tamc_output.$FS
3107    
3108  ftl_tamc: ftl_tamc_output.o \$(OBJFILES)  ftl_tamc: ftl_tamc_output.o \$(OBJFILES)
3109          \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_tamc_output.o \$(LIBS)          \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_tamc_output.o \$(LIBS)
   
3110    
3111  # ... SVD ...  # ... SVD ...
3112  svdtaf: ad_taf_output.f ftl_taf_output.f  svdtaf: ad_taf_output.$FS ftl_taf_output.$FS
3113  svdall: svd_taf          @echo "--->>> Only ran TAF to generate SVD code!    <<<---"
3114            @echo "--->>> Do make svdall afterwards to compile. <<<---"
3115    svdall: svd_touch svd_taf
3116    
3117  svd_taf: ad_taf_output.o ftl_taf_output.o \$(OBJFILES)  svd_taf: \$(OBJFILES)
3118          \$(LINK) -o mitgcmuv_svd \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_taf_output.o ftl_taf_output.o \$(LIBS)          \$(LINK) -o mitgcmuv_svd \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_taf_output.o ftl_taf_output.o \$(LIBS)
3119    
3120            @echo "--->>> Only COMPILE svd code! <<<---"
3121            @echo "--->>> Assumes you previously <<<---"
3122            @echo "--->>> did make svdtaf        <<<---"
3123    
3124    svd_touch:
3125            @echo "--->>> Only COMPILE svd code! <<<---"
3126            @echo "--->>> Assumes you previously <<<---"
3127            @echo "--->>> did make svdtaf        <<<---"
3128            touch ad_taf_output.$FS ftl_taf_output.$FS
3129            \$(FC) \$(FFLAGS) \$(FOPTIM) -c ad_taf_output.$FS
3130            \$(FC) \$(FFLAGS) \$(FOPTIM) -c ftl_taf_output.$FS
3131            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "SVD version" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN > ad_config.template
3132            cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
3133            @-rm -f ad_config.template
3134    
3135  #=========================================  EOF
3136    
3137    fi
3138    
3139    #===  for OpenAD  ========================
3140    
3141    if test "x$OPENAD" != x ; then
3142    
3143    # ============ begin OpenAD specific section ==============
3144    
3145    cat >>$MAKEFILE <<EOF
3146    
3147    # all the source files linked from the various locations:
3148    ALL_LINKED_FILES= \
3149    \$(F77_SRC_FILES) \
3150    \$(C_SRC_FILES) \
3151    \$(H_SRC_FILES) \
3152    \$(F90_SRC_FILES) \
3153    \$(SPECIAL_FILES)
3154    
3155    ifndef OPENADROOT
3156      \$(error "Error:  environment variable OPENADROOT not defined!")
3157    endif
3158    
3159    ifndef XAIFSCHEMAROOT
3160      \$(error "Error:  environment variable XAIFSCHEMAROOT not defined!")
3161    endif
3162    
3163    ifndef XAIFBOOSTERROOT
3164      \$(error "Error:  environment variable XAIFBOOSTERROOT not defined!")
3165    endif
3166    
3167    EOF
3168    
3169    echo "  Add the source list for common block to module conversion "
3170    echo >> $MAKEFILE
3171    printf "CB2M_F90_SRC_NAMES = " >> $MAKEFILE
3172    for i in `cat ${OAD_CB2M_FILES}` ; do
3173      echo    " \\" >> $MAKEFILE
3174      printf " $i" >> $MAKEFILE
3175    done
3176    echo >> $MAKEFILE
3177    
3178    echo "  Add the source list for AD code generation"
3179    echo >> $MAKEFILE
3180    printf "AD_FILES = " >> $MAKEFILE
3181    for i in `cat ${OAD_CB2M_FILES}` ; do
3182      echo    " \\" >> $MAKEFILE
3183      printf " ${i}_mod.f$FS90" >> $MAKEFILE
3184    done
3185    AD_FILES=`cat adSrcFiles.tmp`
3186    for i in $AD_FILES ; do
3187      basename=${i%%.f}
3188      toBeIgnored=`egrep ^$basename'[      ]*' ${OAD_DONT_COMPILE} ${OAD_DONT_TRANSFORM}`
3189      if test -z "$toBeIgnored" ; then
3190        echo    " \\" >> $MAKEFILE
3191        printf " $i" >> $MAKEFILE
3192      fi
3193    done
3194    echo >> $MAKEFILE
3195    rm -f adSrcFiles.tmp
3196    
3197    cat >>$MAKEFILE <<EOF
3198    
3199    adAll: \$(EXE_AD)
3200    .PHONY: adAll
3201    
3202    CB2M_F90_PP_SRC_FILES=\$(addsuffix _mod.f$FS90, \$(CB2M_F90_SRC_NAMES))
3203    
3204    .PRECIOUS: \$(CB2M_F90_PP_SRC_FILES) \$(NON_AD_F77_SRC_FILES:.F=_cb2m.f$FS90)
3205    
3206    .PHONY: adDepend
3207    adDepend: \$(ALL_LINKED_FILES) \$(addsuffix _mod.h, \$(CB2M_F90_SRC_NAMES)) \$(addsuffix _mod.FF90, \$(CB2M_F90_SRC_NAMES)) \$(F77_SRC_FILES:.F=_cb2m.FF90)
3208            \$(MAKEDEPEND) -f \$(MAKEFILE) -o .$FS \$(DEFINES) \$(INCLUDES) \$(F77_SRC_FILES)
3209            \$(TOOLSDIR)/f90mkdepend >> \$(MAKEFILE)
3210            -rm -f makedepend.out
3211    
3212    OPENAD_SUPPORT_F90_SRC_FILES = \
3213    w2f__types.F90 \
3214    OAD_active.F90 \
3215    OAD_cp.F90 \
3216    OAD_rev.F90 \
3217    OAD_tape.F90
3218    
3219    OPENAD_SUPPORT_C_SRC_FILES = \
3220    iaddr.c \
3221    timeRatio.c
3222    
3223    f95_test_mods.f90: \$(OPENAD_SUPPORT_F90_SRC_FILES:F90=$FS90)
3224            cat \$^ > \$@
3225    
3226    f95_test.f90: all_mods.xb.x2w.w2f.pp.f$FS90 \$(NON_AD_F77_SRC_FILES:.F=_cb2m.f$FS90) ad_input_code.w2f.pre.xb.x2w.w2f.td.pp.f$FS90
3227            cat \$^ > \$@
3228    
3229    f95_test.out: f95_test_mods.f90 f95_test.f90
3230            f95 -fixed -w=unused -maxcontin=132 -c f95_test_mods.f90 > \$@ 2>&1
3231            f95 -fixed -w=unused -maxcontin=132 -c -fixed f95_test.f90 >> \$@ 2>&1
3232    
3233    CB2M_AD_FILES=\$(AD_FILES:.f=_cb2m.f$FS90)
3234    
3235    AD_OBJ_FILES_S1=\$(OPENAD_SUPPORT_F90_SRC_FILES:.F90=.o) \$(OPENAD_SUPPORT_C_SRC_FILES:.c=.o)  OAD_intrinsics_oad.o \$(CB2M_AD_FILES:.f$FS90=_oad.o)
3236    
3237    AD_OBJ_FILES_S2=\$(AD_OBJ_FILES_S1) \$(NON_AD_F77_SRC_FILES:.F=_cb2m.o) \$(C_SRC_FILES:.c=.o) \$(F90_SRC_FILES:.F90=.o)
3238    
3239    \$(EXE_AD): \$(ALL_LINKED_FILES) \$(addsuffix _mod.h, \$(CB2M_F90_SRC_NAMES)) postProcess.tag \$(AD_OBJ_FILES_S2)
3240            \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(AD_OBJ_FILES_S2) \$(LIBS)
3241    
3242    # create sources files modules from header files containing common blocks
3243    %_mod.FF90 : %.h \${OADTOOLS}/cb2mGetModules.csh \${OADTOOLS}/cb2mGetModules.awk
3244            \${OADTOOLS}/cb2mGetModules.csh $< \${OADTOOLS}/cb2mGetModules.awk
3245    
3246    # create new header files with USE statements for the new modules made above
3247    %_mod.h : %.h \${OADTOOLS}/cb2mGetHeaders.csh \${OADTOOLS}/cb2mGetHeaders.awk
3248            \${OADTOOLS}/cb2mGetHeaders.csh $< \${OADTOOLS}/cb2mGetHeaders.awk \$(CB2M_F90_SRC_NAMES)
3249    
3250    # change the include directives of everybody to refer to  the new header files with the USE statements
3251    %_cb2m.FF90 : %.F \${OADTOOLS}/cb2mUseModules.bash
3252            \${OADTOOLS}/cb2mUseModules.bash $< ${MPI}
3253    
3254    # makefile debug rule
3255    small_f: \$(CB2M_F90_PP_SRC_FILES)
3256    .PHONY: small_f
3257    
3258    ad_output.txt: \$(EXE_AD)
3259            @printf 'linking data files ... '
3260            \$(LN) -f ../input_ad/data* ../input_ad/eedata .
3261            \$(LN) -f ../../global_ocean.90x40x15/input/*.bin .
3262            @printf 'running ... '
3263            @./\$(EXE_AD) > \$@
3264    
3265    ad_input_code.f$FS90:  \$(CB2M_AD_FILES)
3266            cat \$^ > \$@
3267    
3268    # canonicalizer
3269    ad_input_code_sf.pre.f90 : \$(CB2M_AD_FILES)
3270            \${OPENADFORTTK_BASE}/tools/SourceProcessing/preProcess.py --timing --r8 -H -S  -o \$@ \$^
3271    
3272    # replace stop statements (to avoid the implied unstructured control flow)  with print statements
3273    ad_input_code_sf.pre.s2p.f90 : ad_input_code_sf.pre.f90
3274            cat \$< | sed -f \${OADTOOLS}/stop2print.sed > ad_input_code_sf.pre.s2p.f90
3275    
3276    # F -> WHIRL
3277    ad_input_code_sf.pre.s2p.B: ad_input_code_sf.pre.s2p.f90
3278            \${OPEN64ROOT}/crayf90/sgi/mfef90 -r8 -z -F ad_input_code_sf.pre.s2p.f90
3279    
3280    # WHIRL -> XAIF
3281    ad_input_code_sf.pre.s2p.xaif : ad_input_code_sf.pre.s2p.B
3282            \${OPENADFORTTK}/bin/whirl2xaif -s -n --debug 1 -o \$@ \$<
3283    
3284    # XAIF -> XAIF'
3285    ad_input_code_sf.pre.s2p.xb.xaif : ad_input_code_sf.pre.s2p.xaif xaif.xsd xaif_base.xsd xaif_inlinable_intrinsics.xsd xaif_derivative_propagator.xsd xaif_output.xsd
3286            \${XAIFBOOSTERROOT}/xaifBooster/algorithms/BasicBlockPreaccumulationReverse/driver/oadDriver -f -t forward_step -i \$< -c \${XAIFSCHEMAROOT}/schema/examples/inlinable_intrinsics.xaif -o \$@ -I -r
3287    
3288    # XAIF' -> WHIRL'
3289    ad_input_code_sf.pre.s2p.xb.x2w.B : ad_input_code_sf.pre.s2p.xb.xaif
3290            \${OPENADFORTTK}/bin/xaif2whirl --debug 1 ad_input_code_sf.pre.s2p.B \$<
3291    
3292    # WHIRL' -> F'
3293    ad_input_code_sf.pre.s2p.xb.x2w.w2f.f$FS90: ad_input_code_sf.pre.s2p.xb.x2w.B
3294            \${OPEN64ROOT}/whirl2f/whirl2f -FLIST:ftn_file=\$@ -openad \$<
3295    
3296    # insert template directives
3297    ad_input_code_sf.pre.s2p.xb.x2w.w2f.td.f$FS90: ad_input_code_sf.pre.s2p.xb.x2w.w2f.f$FS90 \${OADTOOLS}/insertTemplateDir.bash
3298            \${OADTOOLS}/insertTemplateDir.bash \$< \$@
3299    
3300    PPEXTRAS=\$(wildcard \${OADTOOLS}/ad_template.*.F) \${OADTOOLS}/ad_inline.F
3301    # postprocess F'
3302    postProcess.tag: ad_input_code_sf.pre.s2p.xb.x2w.w2f.td.f$FS90 \$(PPEXTRAS:.F=.f) | w2f__types.f90
3303            \${OPENADFORTTK_BASE}/tools/SourceProcessing/postProcess.py --progress --timing --infoUnitFile w2f__types.f90 --outputFormat=fixed --separateOutput --pathSuffix "" --filenameSuffix "_oad" -m r -i \${OADTOOLS}/ad_inline.f \$<
3304            # the target is a placeholder to trigger a single execution of the rule
3305            touch \$@
3306    # put this so make knows about the postprocessing output
3307    OAD_intrinsics_oad.f \$(CB2M_AD_FILES:.f$FS90=_oad.f): postProcess.tag
3308    
3309    # link the XAIF schema files
3310    %.xsd:
3311            \$(LN) \${XAIFSCHEMAROOT}/schema/\$@ .
3312    
3313    # link the support files:
3314    \$(OPENAD_SUPPORT_F90_SRC_FILES) \$(OPENAD_SUPPORT_C_SRC_FILES):
3315            \$(LN) \${OADTOOLS}/\$@ .
3316    
3317    AD_CLEAN += *_mod.h *_mod.F90 *.FF90 *.mod-whirl temp.sed oad_cp.* postProcess.tag \$(PPEXTRAS:.F=.f)
3318    
3319    # ============ end OpenAD specific section ==============
3320    
3321  EOF  EOF
3322    
3323    fi
3324    
3325    #=========================================
3326    
3327  if test "x$EXEHOOK" != x ; then  if test "x$EXEHOOK" != x ; then
3328      printf "\nexehook:\n\t%s\n" $EXEHOOK >> $MAKEFILE      printf "\nexehook:\n\t%s\n" $EXEHOOK >> $MAKEFILE
3329  fi  fi
# Line 2140  printf "\n\n# DO NOT DELETE\n" >> $MAKEF Line 3359  printf "\n\n# DO NOT DELETE\n" >> $MAKEF
3359  printf "\n===  Done  ===\n"  printf "\n===  Done  ===\n"
3360    
3361  # Create special header files  # Create special header files
3362  $BASH $TOOLSDIR/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bPACKAGES_CONFIG_H "Disabled packages:" $DISABLED_PACKAGES " " "Enabled packages:" $ENABLED_PACKAGES > $PACKAGES_DOT_H".tmp"  $BASH $TOOLSDIR/convert_cpp_cmd2defines -bPACKAGES_CONFIG_H "Disabled packages:" $DISABLED_PACKAGES " " "Enabled packages:" $ENABLED_PACKAGES > $PACKAGES_DOT_H".tmp"
3363  if test ! -f $PACKAGES_DOT_H ; then  if test ! -f $PACKAGES_DOT_H ; then
3364      mv -f $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H      mv -f $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H
3365  else  else
# Line 2154  else Line 3373  else
3373      fi      fi
3374  fi  fi
3375  if test ! -f AD_CONFIG.h ; then  if test ! -f AD_CONFIG.h ; then
3376      $BASH $TOOLSDIR/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > AD_CONFIG.h      $BASH $TOOLSDIR/convert_cpp_cmd2defines "Default version" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN > AD_CONFIG.h
3377  fi  fi
3378    
   
3379  #  Write the "state" for future records  #  Write the "state" for future records
3380  if test "x$DUMPSTATE" != xf ; then  if test "x$DUMPSTATE" = xt ; then
3381      printf "" > genmake_state      printf "" > genmake_state
3382      for i in $gm_state ; do      for i in $gm_state ; do
3383          t1="t2=\$$i"          t1="t2=\$$i"
3384          eval $t1          eval $t1
3385          echo "$i='$t2'" >> genmake_state          echo "$i='$t2'" | sed -e 's/  */ /g' >> genmake_state
3386      done      done
3387  fi  fi

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